Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008088
(1090 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777205.1| brain acid soluble protein 1 [Bos taurus]. 144 1e-34
Alignment gi|XP_002706305.1| PREDICTED: hypothetical protein [Bos taurus]. 135 8e-32
>ref|NP_777205.1| brain acid soluble protein 1 [Bos taurus].
Length = 227
Score = 144 bits (363), Expect = 1e-34
Identities = 83/135 (61%), Positives = 83/135 (61%)
Frame = +2
Query: 536 TEGAEGKQETPKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTKDDKSKXXXXXXXXX 715
TEGAEGK E PKD TKDDKSK
Sbjct: 93 TEGAEGKPEPPKDAEQEPAAASGPSTGGDAPKASEAEAAEPAAPTKDDKSKEGGDATKTE 152
Query: 716 XXXXXXXXXXKSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPA 895
KSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPA
Sbjct: 153 APAAPAAQETKSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPA 212
Query: 896 ETPAANSDQTVAVKE 940
ETPAANSDQTVAVKE
Sbjct: 213 ETPAANSDQTVAVKE 227
>ref|XP_002706305.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 177
Score = 135 bits (339), Expect = 8e-32
Identities = 72/91 (79%), Positives = 72/91 (79%)
Frame = +2
Query: 668 TKDDKSKXXXXXXXXXXXXXXXXXXXKSDGAPASDSKPSSTEAAPSSKETPAATEAPSST 847
TKDDKSK KSDGAPASDSKPSSTEAAPSSKETPAATEAPSST
Sbjct: 87 TKDDKSKEGGDATKTEAPAAPAAQETKSDGAPASDSKPSSTEAAPSSKETPAATEAPSST 146
Query: 848 PKAQAPAAPADEVKPAETPAANSDQTVAVKE 940
PKAQAPAAPADEVKPAETPAANSDQTVAVKE
Sbjct: 147 PKAQAPAAPADEVKPAETPAANSDQTVAVKE 177
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,343,131
Number of extensions: 659557
Number of successful extensions: 5723
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5448
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008088
(1090 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868783.1| PREDICTED: hypothetical protein XP_863690 [Cani... 62 1e-09
>ref|XP_868783.1| PREDICTED: hypothetical protein XP_863690 [Canis familiaris].
Length = 232
Score = 62.0 bits (149), Expect = 1e-09
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 12/77 (15%)
Frame = +2
Query: 746 KSDGAPASDSKP-----SSTEAAPSSKETPAATEAPSST-------PKAQAPAAPADEVK 889
KSDGAPASDSKP SS EAAPSSKE+PAAT A + + A AP APAD+
Sbjct: 160 KSDGAPASDSKPSSGGSSSAEAAPSSKESPAATAAQAQSSAAAQAQSSAAAPGAPADDA- 218
Query: 890 PAETPAANSDQTVAVKE 940
PA +++Q VA+ +
Sbjct: 219 ---PPAGHAEQAVALAD 232
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,849,028
Number of extensions: 583117
Number of successful extensions: 5294
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5112
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008088
(1090 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133903.1| PREDICTED: brain acid soluble protein 1-like... 155 4e-38
>ref|XP_003133903.1| PREDICTED: brain acid soluble protein 1-like [Sus scrofa].
Length = 228
Score = 155 bits (392), Expect = 4e-38
Identities = 97/189 (51%), Positives = 97/189 (51%)
Frame = +2
Query: 374 NETQAAAXXXXXXXXXXXXXXXDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTEGAEG 553
NETQAAA DAQ QTEGAEG
Sbjct: 40 NETQAAAETPEVKEGKEEKPEKDAQDAGGKPDDKEGEKDAEAAKEDAPKAEPEQTEGAEG 99
Query: 554 KQETPKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTKDDKSKXXXXXXXXXXXXXXX 733
KQETPKD LTKDDKSK
Sbjct: 100 KQETPKDAEQEAAAASGPAAGGEAPKASEAEAAEPAALTKDDKSKEAGEPTKTEAPAAPA 159
Query: 734 XXXXKSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPAETPAAN 913
KSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPAETPAAN
Sbjct: 160 AQETKSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPAETPAAN 219
Query: 914 SDQTVAVKE 940
SDQTVAVKE
Sbjct: 220 SDQTVAVKE 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,278,197
Number of extensions: 561715
Number of successful extensions: 3515
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3388
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008088
(1090 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081671.1| brain acid soluble protein 1 [Mus musculus]. 84 2e-16
>ref|NP_081671.1| brain acid soluble protein 1 [Mus musculus].
Length = 226
Score = 84.0 bits (206), Expect = 2e-16
Identities = 49/68 (72%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
Frame = +2
Query: 746 KSDGAPA-SDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPAETP--AANS 916
KSD APA SDSKPSS E APSSKETPAA+EAPSS KA APAAPA AE P AA+S
Sbjct: 159 KSDAAPAASDSKPSSAEPAPSSKETPAASEAPSSAAKAPAPAAPAAAEPQAEAPAAAASS 218
Query: 917 DQTVAVKE 940
+Q+VAVKE
Sbjct: 219 EQSVAVKE 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,133,802
Number of extensions: 457559
Number of successful extensions: 4356
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4168
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008088
(1090 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006308.3| brain acid soluble protein 1 [Homo sapiens]. 112 8e-25
>ref|NP_006308.3| brain acid soluble protein 1 [Homo sapiens].
Length = 227
Score = 112 bits (279), Expect = 8e-25
Identities = 56/65 (86%), Positives = 58/65 (89%)
Frame = +2
Query: 746 KSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPAETPAANSDQT 925
KSDGAPASDSKP S+EAAPSSKETPAATEAPSSTPKAQ PAA A+E KP E PAANSDQT
Sbjct: 163 KSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKPVEAPAANSDQT 222
Query: 926 VAVKE 940
V VKE
Sbjct: 223 VTVKE 227
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,202,412
Number of extensions: 556918
Number of successful extensions: 5507
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5234
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008088
(1090 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 1451 0.0
Sscrofa_Chr08 504 e-140
Sscrofa_Chr02 307 7e-81
>Sscrofa_Chr16
|| Length = 86898991
Score = 1451 bits (732), Expect = 0.0
Identities = 732/732 (100%)
Strand = Plus / Plus
Query: 247 gaactccaagatgggaggcaagctgagcaagaagaagaaggggtacaatgtgaatgatga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865228 gaactccaagatgggaggcaagctgagcaagaagaagaaggggtacaatgtgaatgatga 6865287
Query: 307 gaaggccaaggacaaagacaagaaggctgaaggagccgggacagaagaggaaggaacccc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865288 gaaggccaaggacaaagacaagaaggctgaaggagccgggacagaagaggaaggaacccc 6865347
Query: 367 gaaggagaatgagacccaggcggctgcagagaccccagaggtgaaggagggcaaggagga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865348 gaaggagaatgagacccaggcggctgcagagaccccagaggtgaaggagggcaaggagga 6865407
Query: 427 gaagccagagaaggatgctcaggacgctggcggcaagccagacgacaaggaaggcgagaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865408 gaagccagagaaggatgctcaggacgctggcggcaagccagacgacaaggaaggcgagaa 6865467
Query: 487 agatgcagaggcggccaaggaagatgcgccgaaggcagagcccgagcagacggagggagc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865468 agatgcagaggcggccaaggaagatgcgccgaaggcagagcccgagcagacggagggagc 6865527
Query: 547 cgagggcaagcaggaaaccccaaaggatgctgagcaggaggcggcagccgcttcgggccc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865528 cgagggcaagcaggaaaccccaaaggatgctgagcaggaggcggcagccgcttcgggccc 6865587
Query: 607 cgcggccggcggtgaagcccccaaggcttcggaggccgaggcagcggagcccgcagccct 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865588 cgcggccggcggtgaagcccccaaggcttcggaggccgaggcagcggagcccgcagccct 6865647
Query: 667 caccaaggatgacaagagcaaggaggcaggggaacccacaaagactgaggctcccgcagc 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865648 caccaaggatgacaagagcaaggaggcaggggaacccacaaagactgaggctcccgcagc 6865707
Query: 727 tcctgccgcgcaggagacgaaaagtgacggggccccagcttcagactcaaaacccagcag 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865708 tcctgccgcgcaggagacgaaaagtgacggggccccagcttcagactcaaaacccagcag 6865767
Query: 787 cactgaggctgccccatcctccaaggagacgccagcagccacggaagcacccagttccac 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865768 cactgaggctgccccatcctccaaggagacgccagcagccacggaagcacccagttccac 6865827
Query: 847 gccgaaggcccaggcccccgcagcccccgcagacgaggtcaaacctgccgagaccccggc 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865828 gccgaaggcccaggcccccgcagcccccgcagacgaggtcaaacctgccgagaccccggc 6865887
Query: 907 agctaattccgatcaaaccgtagcagtcaaagaataacaaggacagcctctggagaaacg 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6865888 agctaattccgatcaaaccgtagcagtcaaagaataacaaggacagcctctggagaaacg 6865947
Query: 967 aataccgcttaa 978
||||||||||||
Sbjct: 6865948 aataccgcttaa 6865959
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 100 ctccaactcgctactcgctccgggctccgccgtcgagccggggagagagcctccgctagc 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6829421 ctccaactcgctactcgctccgggctccgccgtcgagccggggagagagcctccgctagc 6829480
Query: 160 agccaggcacccggctggacgacgccagcgacccgggccccttggcggtaccgcgttcac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6829481 agccaggcacccggctggacgacgccagcgacccgggccccttggcggtaccgcgttcac 6829540
Query: 220 ccaggggcggcacaggcacccagacccg 247
||||||||||||||||||||||||||||
Sbjct: 6829541 ccaggggcggcacaggcacccagacccg 6829568
Score = 61.9 bits (31), Expect = 7e-07
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 1031 ctacactaactcgtttncaantggaaagtatgatacgtattgccc-agaaaaacgatgtg 1089
|||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||
Sbjct: 6866026 ctacactaactcgtttcaaattggaagtaatgatacgtattgcccaagaaaaacgatgtg 6866085
Query: 1090 g 1090
|
Sbjct: 6866086 g 6866086
>Sscrofa_Chr08
|| Length = 148491826
Score = 504 bits (254), Expect = e-140
Identities = 406/454 (89%), Gaps = 2/454 (0%)
Strand = Plus / Plus
Query: 142 gagagagcctccgctagcagccaggcacccggctggacgacgccagcgacccgggcccct 201
|||||||||||| ||||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct: 41686624 gagagagcctccactagcagccaggcacgcggctggacgacgccagcaacccaggcccct 41686683
Query: 202 tggcggtaccgcgttcacccaggggcggcacaggcacccagacccgaactccaagatggg 261
|||||| ||||||||||||||||| | |||||||||||||| ||||||| |||||||||
Sbjct: 41686684 tggcggcaccgcgttcacccagggacaccacaggcacccagatccgaactgcaagatggg 41686743
Query: 262 aggcaagctgagcaagaagaagaaggggtacaatgtgaatgatgagaaggccaaggacaa 321
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 41686744 aggcaagctgagcaagaagaaaaaggggtacaatgtgaatgatgagaaggccaaggacaa 41686803
Query: 322 agacaagaaggctgaaggagccgggacagaagaggaaggaaccccgaaggagaatgagac 381
|||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 41686804 agacaagaaggcagaaggagcctggacagaagaggaaggaacccggaaggagaatgagac 41686863
Query: 382 ccaggcggctgcagagaccccagaggtgaaggagggcaaggaggagaagccagagaagga 441
|||||| ||||| ||||||||||||||||| | | | |||||||||||||||| |||||
Sbjct: 41686864 ccaggcagctgcggagaccccagaggtgaaaaacgaccaggaggagaagccagaaaagga 41686923
Query: 442 tgctcaggacgctggcggcaagccagacgac-aaggaaggcgagaaagatgcagaggcgg 500
||||||||| |||| | ||||||| |||||| ||||||||||||| || |||||||| |
Sbjct: 41686924 tgctcaggatgctgtcagcaagccggacgacaaaggaaggcgagagagccgcagaggcag 41686983
Query: 501 ccaaggaagatgcgccgaaggcagagc-ccgagcagacggagggagccgagggcaagcag 559
|||||||||| || |||||||||||| | | ||||||||| ||| || ||||||||
Sbjct: 41686984 ccaaggaagacacgtcgaaggcagagcttggggaagacggaggcagctaagagcaagcag 41687043
Query: 560 gaaaccccaaaggatgctgagcaggaggcggcag 593
| | ||| |||||| ||||||||||||||||||
Sbjct: 41687044 gcaccccggaaggattctgagcaggaggcggcag 41687077
Score = 232 bits (117), Expect = 3e-58
Identities = 195/221 (88%)
Strand = Plus / Plus
Query: 758 gccccagcttcagactcaaaacccagcagcactgaggctgccccatcctccaaggagacg 817
||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||
Sbjct: 41687158 gccccagcttcagacacaaaacccggcagcttcaaggctgccctatcctccaaggagacg 41687217
Query: 818 ccagcagccacggaagcacccagttccacgccgaaggcccaggcccccgcagcccccgca 877
||||||| ||||||||||||||||| |||| | || |||||| |||| |||||||| |||
Sbjct: 41687218 ccagcagtcacggaagcacccagtttcacggccaaagcccagaccccagcagcccctgca 41687277
Query: 878 gacgaggtcaaacctgccgagaccccggcagctaattccgatcaaaccgtagcagtcaaa 937
||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct: 41687278 gacgaggtcaaacttgccgagaccccagcagctaatttcgatcaaacctgagcagtcaaa 41687337
Query: 938 gaataacaaggacagcctctggagaaacgaataccgcttaa 978
|||||||| |||||||||||||| |||||||||||||
Sbjct: 41687338 agataacaagagcagcctctggagaagagaataccgcttaa 41687378
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 677 gacaagagcaaggaggcaggggaacccacaaagactgaggctc 719
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 41687101 gacaagagcaacgaggcaggggaacccacaaagactgaggctc 41687143
>Sscrofa_Chr02
|| Length = 162569375
Score = 307 bits (155), Expect = 7e-81
Identities = 239/267 (89%)
Strand = Plus / Minus
Query: 157 agcagccaggcacccggctggacgacgccagcgacccgggccccttggcggtaccgcgtt 216
|||||||||||| || ||| | ||| |||| ||||| ||||||||| || ||| |||
Sbjct: 53308656 agcagccaggcatccagcttggcgaagccattgacccaagccccttggtggcaccttgtt 53308597
Query: 217 cacccaggggcggcacaggcacccagacccgaactccaagatgggaggcaagctgagcaa 276
||||||||||| | | |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 53308596 cacccaggggcagtataggcacccagaccccaactccaagataggaggcaagctgagcaa 53308537
Query: 277 gaagaagaaggggtacaatgtgaatgatgagaaggccaaggacaaagacaagaaggctga 336
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 53308536 gaagaagaaggggtacagtgtgaatgatgagaaggccaaggacaaagacaagaaggccaa 53308477
Query: 337 aggagccgggacagaagaggaaggaaccccgaaggagaatgagacccaggcggctgcaga 396
|||| ||||| |||||||||||||||| |||||||| ||||||| |||||||||||| ||
Sbjct: 53308476 aggaaccggggcagaagaggaaggaactccgaaggacaatgagatccaggcggctgcgga 53308417
Query: 397 gaccccagaggtgaaggagggcaagga 423
||||| |||||||||||||||||||||
Sbjct: 53308416 gaccctagaggtgaaggagggcaagga 53308390
Score = 218 bits (110), Expect = 5e-54
Identities = 319/383 (83%), Gaps = 13/383 (3%)
Strand = Plus / Minus
Query: 495 aggcggccaaggaagatgcgccgaaggcagagcccgagcagacggagggagccgagggca 554
|||| ||||||||||| || || ||||||||| | ||||||| ||||||| ||||| |
Sbjct: 53308378 aggcagccaaggaagaagcaccaaaggcagagacggagcagaaggagggattggagggga 53308319
Query: 555 agcaggaaaccccaaaggatgctgagcaggaggcggcagccgcttcgggccccgcggccg 614
||||||| |||||| |||||||||||| |||| ||| || || | || ||| | ||| |
Sbjct: 53308318 agcaggagcccccaagggatgctgagcatgagggggctgctgcctagg-cccaggggcgg 53308260
Query: 615 gcggtgaagcccccaaggcttcggaggccgaggca---gcggagcccgcagccctcacca 671
|| |||||||| ||||||||| |||||| |||| | ||||||| |||| |||||
Sbjct: 53308259 gcagtgaagcctccaaggctttggaggctgaggtgatggtggagcccatggccc-cacca 53308201
Query: 672 aggatgacaagagcaaggaggcaggggaacccacaaagactgaggctcccgcagctcctg 731
|||||||||||||||||||||||||||||||||| |||||||||||||| || | |||
Sbjct: 53308200 aggatgacaagagcaaggaggcaggggaacccacctagactgaggctccccaaggttctg 53308141
Query: 732 ccgcgcaggagacgaaaagtgacggggccccagcttcagactcaaaacccagcagcactg 791
| | | || ||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 53308140 ctggg-----gaagaaaagtgatggggccccagcttcagactcaaaacccagcagccctg 53308086
Query: 792 aggctgccccatcctccaaggagacgccagcagccacggaagcacccagttccacgccga 851
|||||||||||||| |||| ||||| ||||||||||| ||||||||||||||| || |
Sbjct: 53308085 aggctgccccatccaccaaagagaccccagcagccac--aagcacccagttccatgcaca 53308028
Query: 852 aggcccaggcccccgcagccccc 874
|||||| |||||||| |||||||
Sbjct: 53308027 aggccc-ggcccccgaagccccc 53308006
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,731,524
Number of extensions: 169
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 10
Length of query: 1090
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1069
Effective length of database: 2,808,413,156
Effective search space: 3002193663764
Effective search space used: 3002193663764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)