Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008090
(972 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029493.1| stromal cell-derived factor 2 precursor [Bos... 400 e-112
Alignment gi|NP_001030400.1| stromal cell-derived factor 2-like protein 1... 256 3e-68
>ref|NP_001029493.1| stromal cell-derived factor 2 precursor [Bos taurus].
Length = 211
Score = 400 bits (1028), Expect = e-112
Identities = 192/211 (90%), Positives = 194/211 (91%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVVSLLLFGGLWSAVGSSNL VVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 1 MAVVSLLLFGGLWSAVGSSNLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
DDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 61 TSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKP+ELLKAE HH+EL
Sbjct: 181 QPSQNNYWKAMEGIFMKPSELLKAEGHHTEL 211
>ref|NP_001030400.1| stromal cell-derived factor 2-like protein 1 precursor [Bos
taurus].
Length = 221
Score = 256 bits (653), Expect = 3e-68
Identities = 126/219 (57%), Positives = 152/219 (69%), Gaps = 1/219 (0%)
Frame = +2
Query: 20 GLGASVGMAVVSLLLFGGLWSA-VGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXX 196
G G + G A++ +LL L S+ G+VTCGSV+KL NT+H VRLHSHD++Y
Sbjct: 5 GSGRAAGPALLGILLALSLSGGRAAKSDAGLVTCGSVLKLFNTQHRVRLHSHDIKYGSGS 64
Query: 197 XXXXXXXXXXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPL 376
DD+NSYWRIRG T C RG+P+RCGQ +RLTHV TG+NLH+HHF SPL
Sbjct: 65 GQQSVTGVEASDDANSYWRIRGGTEGECPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPL 124
Query: 377 SGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISG 556
+ NQEVSAFGE+GEGD LD WTV C+G +W R+ VRF+H T V LSVTGEQYG PI G
Sbjct: 125 TNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRG 184
Query: 557 QKEVHGMAQPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
Q EVHGMA S +N WKAMEGIF+KP+ +A H EL
Sbjct: 185 QHEVHGMASASAHNKWKAMEGIFIKPSP--EAPGGHDEL 221
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,034,369
Number of extensions: 1185026
Number of successful extensions: 3756
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3738
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008090
(972 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537746.2| PREDICTED: similar to Stromal cell-derived fact... 397 e-111
Alignment gi|XP_868192.1| PREDICTED: similar to Stromal cell-derived fact... 347 7e-96
Alignment gi|XP_850810.1| PREDICTED: similar to Stromal cell-derived fact... 248 8e-66
Alignment gi|XP_868185.1| PREDICTED: similar to Stromal cell-derived fact... 201 1e-51
>ref|XP_537746.2| PREDICTED: similar to Stromal cell-derived factor 2 precursor
(SDF-2) isoform 1 [Canis familiaris].
Length = 211
Score = 397 bits (1020), Expect = e-111
Identities = 190/211 (90%), Positives = 194/211 (91%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVVSLLL GGLW+AVG+SNL VVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 1 MAVVSLLLLGGLWNAVGASNLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
DDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 61 TSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKP+ELLKAEAHH+EL
Sbjct: 181 QPSQNNYWKAMEGIFMKPSELLKAEAHHAEL 211
>ref|XP_868192.1| PREDICTED: similar to Stromal cell-derived factor 2 precursor
(SDF-2) isoform 3 [Canis familiaris].
Length = 178
Score = 347 bits (891), Expect = 7e-96
Identities = 172/211 (81%), Positives = 176/211 (83%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVVSLLL GGLW+AVG+SNL VVTCGSVVKLLNT
Sbjct: 1 MAVVSLLLLGGLWNAVGASNLAVVTCGSVVKLLNT------------------------- 35
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
YWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 36 --------YWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 87
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 88 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 147
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKP+ELLKAEAHH+EL
Sbjct: 148 QPSQNNYWKAMEGIFMKPSELLKAEAHHAEL 178
>ref|XP_850810.1| PREDICTED: similar to Stromal cell-derived factor 2-like protein 1
precursor (SDF2 like protein 1) (PWP1-interacting
protein 8) [Canis familiaris].
Length = 338
Score = 248 bits (632), Expect = 8e-66
Identities = 125/220 (56%), Positives = 152/220 (69%), Gaps = 2/220 (0%)
Frame = +2
Query: 20 GLGASVGMAVVSLLLFGGLWSAVGSSNLG--VVTCGSVVKLLNTRHNVRLHSHDVRYXXX 193
G G + G A++ LLL L G++ G +VTCGSV+KL NT+H VRLHSHD++Y
Sbjct: 122 GRGRAAGPALLGLLLTL-LVPGSGAAKTGARLVTCGSVLKLFNTQHRVRLHSHDIKYGSG 180
Query: 194 XXXXXXXXXXXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSP 373
DD+NSYWRIRG + C RG+P+RCGQ +RLTHV TG+NLH+HHF SP
Sbjct: 181 SGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSP 240
Query: 374 LSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPIS 553
LS NQEVSAFGE+GEGD LD WTV C+G +W R+ VRF+H T V LSVTGEQYG PI
Sbjct: 241 LSNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIR 300
Query: 554 GQKEVHGMAQPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
GQ EVHGM + +N WKAMEGIF+KP+ + A H EL
Sbjct: 301 GQHEVHGMPSANTHNTWKAMEGIFIKPS--VDPSAGHDEL 338
>ref|XP_868185.1| PREDICTED: similar to Stromal cell-derived factor 2 precursor
(SDF-2) isoform 2 [Canis familiaris].
Length = 134
Score = 201 bits (510), Expect = 1e-51
Identities = 97/116 (83%), Positives = 99/116 (85%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVVSLLL GGLW+AVG+SNL VVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 1 MAVVSLLLLGGLWNAVGASNLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQ 388
DDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQ
Sbjct: 61 TSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQ 116
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,738,891
Number of extensions: 1223258
Number of successful extensions: 3795
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3786
Number of HSP's successfully gapped: 5
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008090
(972 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131821.1| PREDICTED: stromal cell-derived factor 2-lik... 407 e-114
Alignment gi|XP_003358233.1| PREDICTED: stromal cell-derived factor 2-lik... 407 e-114
Alignment gi|XP_003358232.1| PREDICTED: stromal cell-derived factor 2-lik... 407 e-114
Alignment gi|XP_003358231.1| PREDICTED: stromal cell-derived factor 2-lik... 407 e-114
Alignment gi|XP_001929577.1| PREDICTED: stromal cell-derived factor 2-lik... 248 5e-66
Alignment gi|XP_003133040.1| PREDICTED: stromal cell-derived factor 2-lik... 204 8e-53
Alignment gi|XP_001926197.3| PREDICTED: protein O-mannosyl-transferase 2 ... 49 3e-06
>ref|XP_003131821.1| PREDICTED: stromal cell-derived factor 2-like [Sus scrofa].
Length = 211
Score = 407 bits (1046), Expect = e-114
Identities = 196/211 (92%), Positives = 196/211 (92%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 1 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
DDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 61 TSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL
Sbjct: 181 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 211
>ref|XP_003358233.1| PREDICTED: stromal cell-derived factor 2-like isoform 3 [Sus
scrofa].
Length = 211
Score = 407 bits (1046), Expect = e-114
Identities = 196/211 (92%), Positives = 196/211 (92%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 1 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
DDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 61 TSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL
Sbjct: 181 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 211
>ref|XP_003358232.1| PREDICTED: stromal cell-derived factor 2-like isoform 2 [Sus
scrofa].
Length = 211
Score = 407 bits (1046), Expect = e-114
Identities = 196/211 (92%), Positives = 196/211 (92%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 1 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
DDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 61 TSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL
Sbjct: 181 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 211
>ref|XP_003358231.1| PREDICTED: stromal cell-derived factor 2-like isoform 1 [Sus
scrofa].
Length = 211
Score = 407 bits (1046), Expect = e-114
Identities = 196/211 (92%), Positives = 196/211 (92%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 1 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
DDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 61 TSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL
Sbjct: 181 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 211
>ref|XP_001929577.1| PREDICTED: stromal cell-derived factor 2-like protein 1 isoform 1
[Sus scrofa].
Length = 221
Score = 248 bits (632), Expect = 5e-66
Identities = 123/219 (56%), Positives = 151/219 (68%), Gaps = 1/219 (0%)
Frame = +2
Query: 20 GLGASVGMAVVSLLLFGGL-WSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXX 196
G + G A++ LLL + S + G+VTCGSV+KLLNT+H VRLHSHD++Y
Sbjct: 5 GCRRAAGPALLGLLLALLVPGSGAAKTGSGLVTCGSVLKLLNTQHRVRLHSHDIKYGSGS 64
Query: 197 XXXXXXXXXXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPL 376
DD+NSYW+IRG + C RG+P+RCGQ +RLTHV TG+NLH+HHF SPL
Sbjct: 65 GQQSVTGVEASDDANSYWQIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPL 124
Query: 377 SGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISG 556
S NQEVSAFGE+GEGD LD WTV C+G +W R+ VRF+H T V LSVTGEQYG PI G
Sbjct: 125 SNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRG 184
Query: 557 QKEVHGMAQPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
Q EVHGM + +N WKAMEGIF+KP+ + A H EL
Sbjct: 185 QHEVHGMPSANTHNRWKAMEGIFIKPS--MDPSAGHDEL 221
>ref|XP_003133040.1| PREDICTED: stromal cell-derived factor 2-like protein 1 isoform 2
[Sus scrofa].
Length = 167
Score = 204 bits (518), Expect = 8e-53
Identities = 95/148 (64%), Positives = 113/148 (76%)
Frame = +2
Query: 230 DDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGE 409
DD+NSYW+IRG + C RG+P+RCGQ +RLTHV TG+NLH+HHF SPLS NQEVSAFGE
Sbjct: 22 DDANSYWQIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGE 81
Query: 410 EGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPS 589
+GEGD LD WTV C+G +W R+ VRF+H T V LSVTGEQYG PI GQ EVHGM +
Sbjct: 82 DGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSAN 141
Query: 590 QNNYWKAMEGIFMKPNELLKAEAHHSEL 673
+N WKAMEGIF+KP+ + A H EL
Sbjct: 142 THNRWKAMEGIFIKPS--MDPSAGHDEL 167
>ref|XP_001926197.3| PREDICTED: protein O-mannosyl-transferase 2 [Sus scrofa].
Length = 750
Score = 49.3 bits (116), Expect = 3e-06
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Frame = +2
Query: 119 GSVVKLLNTRHNVR-LHSHDVRYXXXXXXXXXXXXXXXD-DSNSYWRIRGKTATVCERGT 292
GSV+ + N R + LHSH Y D N+ W I+ K T +
Sbjct: 340 GSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHKDYNNLWIIK-KHNTNSDPLD 398
Query: 293 P------IRCGQPIRLTHVNTGRNLHSHHFTSPLS-GNQEVSAFGEEGEGDYLDDWTV-L 448
P +R G IRL H T RNLHSH+ +PL+ + +V+ +G G GD D W + +
Sbjct: 399 PSLPVEFVRHGDIIRLEHKETSRNLHSHYHEAPLTRKHYQVTGYGINGTGDSNDFWRIEV 458
Query: 449 CNGPYW----VRDGEVRFKHSSTEVLLSVTGE 532
N + V +RF H T +L +G+
Sbjct: 459 VNRKFGNRIKVLRSRIRFIHLVTGCVLGSSGK 490
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,041,056
Number of extensions: 759476
Number of successful extensions: 2398
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2386
Number of HSP's successfully gapped: 7
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008090
(972 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033169.3| stromal cell-derived factor 2 [Mus musculus]. 391 e-109
Alignment gi|NP_071719.1| stromal cell-derived factor 2-like protein 1 pr... 247 9e-66
>ref|NP_033169.3| stromal cell-derived factor 2 [Mus musculus].
Length = 219
Score = 391 bits (1004), Expect = e-109
Identities = 184/211 (87%), Positives = 193/211 (91%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAV+SLLL GGLWSAVG+SN+ VVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 9 MAVLSLLLLGGLWSAVGASNMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 68
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
DDSNSYWRIRGKTATVCERGTPI+CGQPIRLTH+NTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 69 TSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSA 128
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSST+VLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 129 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMA 188
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKP+ELL+AE HH+EL
Sbjct: 189 QPSQNNYWKAMEGIFMKPSELLRAEVHHAEL 219
>ref|NP_071719.1| stromal cell-derived factor 2-like protein 1 precursor [Mus
musculus].
Length = 221
Score = 247 bits (631), Expect = 9e-66
Identities = 124/217 (57%), Positives = 147/217 (67%), Gaps = 1/217 (0%)
Frame = +2
Query: 26 GASVGMAVVSLLLFGGLWSAVGS-SNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXX 202
G G ++ LLL + S S ++ G+VTCGSV+KLLNT H VRLHSHD++Y
Sbjct: 7 GRVAGPTLLGLLLALSVRSGGASKASAGLVTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQ 66
Query: 203 XXXXXXXXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSG 382
DD+NSYWRIRG + C RG P+RCGQ +RLTHV TG+NLH+HHF SPLS
Sbjct: 67 QSVTGVEESDDANSYWRIRGGSEGGCPRGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSN 126
Query: 383 NQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQK 562
NQEVSAFGE+GEGD LD WTV C+G +W R+ VRF+H T V LSVTGEQYG PI GQ
Sbjct: 127 NQEVSAFGEDGEGDDLDLWTVRCSGQHWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQH 186
Query: 563 EVHGMAQPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
EVHGM + +N WKAMEGIF+KP L H EL
Sbjct: 187 EVHGMPSANAHNTWKAMEGIFIKPGADL--STGHDEL 221
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,669,370
Number of extensions: 1019773
Number of successful extensions: 3302
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3286
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008090
(972 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008854.2| stromal cell-derived factor 2 precursor [Homo s... 394 e-110
Alignment gi|NP_071327.2| stromal cell-derived factor 2-like protein 1 pr... 247 1e-65
Alignment gi|NP_037514.2| protein O-mannosyl-transferase 2 [Homo sapiens]. 49 9e-06
>ref|NP_008854.2| stromal cell-derived factor 2 precursor [Homo sapiens].
Length = 211
Score = 394 bits (1012), Expect = e-110
Identities = 188/211 (89%), Positives = 194/211 (91%)
Frame = +2
Query: 41 MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXX 220
MAVV LLL GGLWSAVG+S+LGVVTCGSVVKLLNTRHNVRLHSHDVRY
Sbjct: 1 MAVVPLLLLGGLWSAVGASSLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 221 XXXDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 400
DDSNSYWRIRGK+ATVCERGTPI+CGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 61 TSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
Query: 401 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 580
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
Query: 581 QPSQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
QPSQNNYWKAMEGIFMKP+ELLKAEAHH+EL
Sbjct: 181 QPSQNNYWKAMEGIFMKPSELLKAEAHHAEL 211
>ref|NP_071327.2| stromal cell-derived factor 2-like protein 1 precursor [Homo
sapiens].
Length = 221
Score = 247 bits (631), Expect = 1e-65
Identities = 121/209 (57%), Positives = 149/209 (71%)
Frame = +2
Query: 47 VVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYXXXXXXXXXXXXXX 226
+++LL+ GG + G+ +VTCGSV+KLLNT H VRLHSHD++Y
Sbjct: 18 LLALLVPGGGAAKTGAE---LVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEA 74
Query: 227 XDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFG 406
DD+NSYWRIRG + C RG+P+RCGQ +RLTHV TG+NLH+HHF SPLS NQEVSAFG
Sbjct: 75 SDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFG 134
Query: 407 EEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQP 586
E+GEGD LD WTV C+G +W R+ VRF+H T V LSVTGEQYG PI GQ EVHGM
Sbjct: 135 EDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSA 194
Query: 587 SQNNYWKAMEGIFMKPNELLKAEAHHSEL 673
+ +N WKAMEGIF+KP+ ++ A H EL
Sbjct: 195 NTHNTWKAMEGIFIKPS--VEPSAGHDEL 221
>ref|NP_037514.2| protein O-mannosyl-transferase 2 [Homo sapiens].
Length = 750
Score = 48.5 bits (114), Expect = 9e-06
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Frame = +2
Query: 119 GSVVKLLNTRHNVR-LHSHDVRYXXXXXXXXXXXXXXXD-DSNSYWRIRGKTATVCERGT 292
GSV+ + N R + LHSH Y D N+ W I+ K T +
Sbjct: 340 GSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHKDYNNLWIIK-KHNTNSDPLD 398
Query: 293 P------IRCGQPIRLTHVNTGRNLHSHHFTSPLS-GNQEVSAFGEEGEGDYLDDWTV-L 448
P +R G IRL H T RNLHSH+ +P++ + +V+ +G G GD D W + +
Sbjct: 399 PSFPVEFVRHGDIIRLEHKETSRNLHSHYHEAPMTRKHYQVTGYGINGTGDSNDFWRIEV 458
Query: 449 CNGPYW----VRDGEVRFKHSSTEVLLSVTGE 532
N + V +RF H T +L +G+
Sbjct: 459 VNRKFGNRIKVLRSRIRFIHLVTGCVLGSSGK 490
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,171,565
Number of extensions: 1214335
Number of successful extensions: 3922
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3888
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008090
(972 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1104 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1104 bits (557), Expect = 0.0
Identities = 582/589 (98%), Gaps = 1/589 (0%)
Strand = Plus / Minus
Query: 385 ccaggaggtgagtgcttttggtgaggaaggtgaaggtgattatctggatgactggacagt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882728 ccaggaggtgagtgcttttggtgaggaaggtgaaggtgattatctggatgactggacagt 46882669
Query: 445 gctctgtaatgggccctactgggtgagggatggcgaggtgcggttcaagcattcttccac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882668 gctctgtaatgggccctactgggtgagggatggcgaggtgcggttcaagcattcttccac 46882609
Query: 505 cgaagtgctgctgtctgtcacaggagaacaatatggtcgacccatcagtgggcaaaaaga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882608 cgaagtgctgctgtctgtcacaggagaacaatatggtcgacccatcagtgggcaaaaaga 46882549
Query: 565 ggtacatggcatggcccagccaagccaaaacaactactggaaagccatggaaggcatctt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882548 ggtacatggcatggcccagccaagccaaaacaactactggaaagccatggaaggcatctt 46882489
Query: 625 catgaagcccaatgagttgttgaaggcagaagcccaccactcagagctctgagtctggag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882488 catgaagcccaatgagttgttgaaggcagaagcccaccactcagagctctgagtctggag 46882429
Query: 685 gctctgagccactgttaccgcacagtgttcatagacgactgctgctccctcaccctttgg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882428 gctctgagccactgttaccgcacagtgttcatagacgactgctgctccctcaccctttgg 46882369
Query: 745 atccctgctacaggttccctggtccgtggccatgtcacctctgagatgaagatgcatgac 804
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882368 acccctgctacaggttccctggtccgtggccatgtcacctctgagatgaagatgcatgac 46882309
Query: 805 agaaaattgtggctgtgtttggaagcttcatcccttcatacttgaattggttgttctccc 864
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882308 agaaaatagtgactgtgtttggaagcttcatcccttcatacttgaattggttgttctccc 46882249
Query: 865 agacttgggtcagttcttcctgagcacaggacttgccactaaaggatcagatgcttttta 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46882248 agacttgggtcagttcttcctgagcacaggacttgccactaaaggatcagatgcttttta 46882189
Query: 925 ttcctattaataaaccaaaaatggggatac-tccctcctacctgggaaa 972
|||||||||||||| || ||| |||||||| ||||||||||||||||||
Sbjct: 46882188 ttcctattaataaaacagaaacggggatacatccctcctacctgggaaa 46882140
Score = 391 bits (197), Expect = e-106
Identities = 200/201 (99%)
Strand = Plus / Minus
Query: 189 caggtagtggacagcagtcggtaacaggtgtaacctctgtggatgacagcaacagttact 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46886901 caggtagtggacagcagtcggtaacaggtgtaacctctgtggatgacagcaacagttact 46886842
Query: 249 ggaggatacgggggaagaccgccacagtgtgtgagaggggaacccccatcagatgtggtc 308
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 46886841 ggaggatacgggggaagactgccacagtgtgtgagaggggaacccccatcagatgtggtc 46886782
Query: 309 agcccattcggctgacacatgtcaatactggccgaaacctccatagtcatcacttcacct 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46886781 agcccattcggctgacacatgtcaatactggccgaaacctccatagtcatcacttcacct 46886722
Query: 369 cacctctttctggaaaccagg 389
|||||||||||||||||||||
Sbjct: 46886721 cacctctttctggaaaccagg 46886701
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 3 ttttcttccaaaagtaggggctcggagctagcgtcgggatggcggtggtgtcgcttctgt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46891698 ttttcttccaaaagtaggggctcggagctagcgtcgggatggcggtggtgtcgcttctgt 46891639
Query: 63 tgttcgggggtttgtggagtgctgtgggatcgtctaatctgggtgtcgttacatgcggtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46891638 tgttcgggggtttgtggagtgctgtgggatcgtctaatctgggtgtcgttacatgcggtt 46891579
Query: 123 ctgtggtgaaactgctcaatacgcgccacaacgtgcgactgcactcacacgacgtgcgct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46891578 ctgtggtgaaactgctcaatacgcgccacaacgtgcgactgcactcacacgacgtgcgct 46891519
Query: 183 acgggtcaggta 194
||||||||||||
Sbjct: 46891518 acgggtcaggta 46891507
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,736,855
Number of extensions: 128
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 3
Length of query: 972
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 951
Effective length of database: 2,808,413,156
Effective search space: 2670800911356
Effective search space used: 2670800911356
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)