Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008092
(1024 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029480.1| proline-rich nuclear receptor coactivator 1 ... 418 e-117
Alignment gi|NP_001070425.1| proline-rich nuclear receptor coactivator 2 ... 53 5e-07
>ref|NP_001029480.1| proline-rich nuclear receptor coactivator 1 [Bos taurus].
Length = 329
Score = 418 bits (1075), Expect = e-117
Identities = 218/296 (73%), Positives = 225/296 (76%), Gaps = 2/296 (0%)
Frame = +1
Query: 142 MTVVSVPQREPLVLGSRLAPMGFSARGYFGALPMVSTXXXXXXXXXXXXXXXXTLFLPHF 321
MTVVSVPQREPLVLG RLA MGFS RGYFGALPMV+T TLFLPHF
Sbjct: 1 MTVVSVPQREPLVLGGRLASMGFSTRGYFGALPMVTTAPPPLPRIPDPRALPPTLFLPHF 60
Query: 322 LGGDGPCLTPQPRAPAPLPNCSLASTGGTXXXXXXXXXXXXXXXXXXGQLPSRFHQYQQH 501
LGGDGPCLTPQPRAPAPLPNCSLA+ GGT GQLPSRFHQYQQH
Sbjct: 61 LGGDGPCLTPQPRAPAPLPNCSLAAAGGTPRAAPKKRRKKKVRTSPSGQLPSRFHQYQQH 120
Query: 502 RPSLEGVRSPATGHSGEQQVPDQXXXXXXXXXXXXXX--EEASLFLXXXXXXXXXXPSFR 675
RPSLEG RSPATG G QQVPDQ EEAS L PSFR
Sbjct: 121 RPSLEGGRSPATGLGGAQQVPDQAQAAAWVPAPTTATRTEEASPLLGPLPPAAPGQPSFR 180
Query: 676 REVLKSKMGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQD 855
REVLKSKMGKSEKIAIPHGQLVHGI LCEQPKINRQK+KYNLPLTKITSAKRNENNFWQD
Sbjct: 181 REVLKSKMGKSEKIAIPHGQLVHGIPLCEQPKINRQKNKYNLPLTKITSAKRNENNFWQD 240
Query: 856 SVSSDIIQKQEKKPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
SVSSDIIQKQEKKPFKN+ENIK+KHLKKS+FLTE+SQKENYAGAKFSDPPSPSVLP
Sbjct: 241 SVSSDIIQKQEKKPFKNTENIKNKHLKKSSFLTEVSQKENYAGAKFSDPPSPSVLP 296
>ref|NP_001070425.1| proline-rich nuclear receptor coactivator 2 [Bos taurus].
Length = 139
Score = 52.8 bits (125), Expect = 5e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q +++RQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQTRNVSK--NQQQLSRQKTKDQNSQMKIVHKKKERGHTYNSSSAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N++N + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQNW-NSSLSSPTLLFKSQTNQNYAGAKFSEPPSPSVLP 108
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,225,295
Number of extensions: 1037819
Number of successful extensions: 6051
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5994
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008092
(1024 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,717,551
Number of extensions: 1052009
Number of successful extensions: 6445
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6355
Number of HSP's successfully gapped: 0
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008092
(1024 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928431.1| PREDICTED: proline-rich nuclear receptor coa... 223 1e-58
Alignment gi|XP_003361165.1| PREDICTED: proline-rich nuclear receptor coa... 55 6e-08
>ref|XP_001928431.1| PREDICTED: proline-rich nuclear receptor coactivator 1-like [Sus
scrofa].
Length = 142
Score = 223 bits (568), Expect = 1e-58
Identities = 108/109 (99%), Positives = 108/109 (99%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSSDII 876
MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSSDII
Sbjct: 1 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSSDII 60
Query: 877 QKQEKKPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
QKQEKKP KNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP
Sbjct: 61 QKQEKKPLKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 109
>ref|XP_003361165.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like [Sus
scrofa].
Length = 139
Score = 55.1 bits (131), Expect = 6e-08
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKDQNSQMKIVHKKKERGHTYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N++N + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQNW-NSSLSSPTLLFKSQTNQNYAGAKFSEPPSPSVLP 108
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,651,248
Number of extensions: 704737
Number of successful extensions: 4043
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3976
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008092
(1024 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028397.2| proline-rich nuclear receptor coactivator 1 ... 309 3e-84
Alignment gi|NP_080659.1| proline-rich nuclear receptor coactivator 2 [Mu... 53 3e-07
>ref|NP_001028397.2| proline-rich nuclear receptor coactivator 1 [Mus musculus].
Length = 297
Score = 309 bits (791), Expect = 3e-84
Identities = 177/294 (60%), Positives = 189/294 (64%)
Frame = +1
Query: 142 MTVVSVPQREPLVLGSRLAPMGFSARGYFGALPMVSTXXXXXXXXXXXXXXXXTLFLPHF 321
MTVVSVPQR+ L L RLAP+GF GALPMV+ TLFLPHF
Sbjct: 1 MTVVSVPQRD-LALSGRLAPLGF-----LGALPMVNPAPPPLPRLPDPRALPPTLFLPHF 54
Query: 322 LGGDGPCLTPQPRAPAPLPNCSLASTGGTXXXXXXXXXXXXXXXXXXGQLPSRFHQYQQH 501
LGGDGPCL P PR AP C+LA GQLPSRFHQ+QQH
Sbjct: 55 LGGDGPCLAPAPRTTAP-SGCTLAPAAAPRAAPKKRRKKKVRASPA-GQLPSRFHQFQQH 112
Query: 502 RPSLEGVRSPATGHSGEQQVPDQXXXXXXXXXXXXXXEEASLFLXXXXXXXXXXPSFRRE 681
RPSLEG RSPA G Q EE L P +E
Sbjct: 113 RPSLEGGRSPAPGPIVAQ-------------------EERGL---AATALLHRQPPLAKE 150
Query: 682 VLKSKMGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSV 861
VLKSKMGKSEKIA+PH QLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNE++FWQDS
Sbjct: 151 VLKSKMGKSEKIALPHSQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNESDFWQDSA 210
Query: 862 SSDIIQKQEKKPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
SSD +QKQEKK FKN+ENIK HLKKSAFLTE+SQKENYAGAKFSDPPSPSVLP
Sbjct: 211 SSDRMQKQEKKSFKNTENIKSNHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLP 264
>ref|NP_080659.1| proline-rich nuclear receptor coactivator 2 [Mus musculus].
Length = 140
Score = 53.1 bits (126), Expect = 3e-07
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSK-YNLPLTKITSAKRNENNFWQDSVSS-D 870
MG E+ IP Q + EQ NRQKSK N TKI K+ + + + ++
Sbjct: 1 MGGGERYNIPDPQSRNASKNQEQQ--NRQKSKDQNSSQTKIAHKKKERGHGYNPAAAAWQ 58
Query: 871 IIQKQEKKPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K ++ + + L + L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 AMQNGGKTKSLSNNSNWNAGLSSPSLLFKSQASQNYAGAKFSEPPSPSVLP 109
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,899,874
Number of extensions: 827646
Number of successful extensions: 4301
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4249
Number of HSP's successfully gapped: 3
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008092
(1024 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006804.1| proline-rich nuclear receptor coactivator 1 [Ho... 397 e-110
Alignment gi|XP_003119128.1| PREDICTED: proline-rich nuclear receptor coa... 56 6e-08
Alignment gi|XP_003119126.1| PREDICTED: proline-rich nuclear receptor coa... 52 9e-07
Alignment gi|XP_003119125.1| PREDICTED: proline-rich nuclear receptor coa... 52 9e-07
Alignment gi|XP_003119124.1| PREDICTED: proline-rich nuclear receptor coa... 52 9e-07
Alignment gi|XP_003119123.1| PREDICTED: proline-rich nuclear receptor coa... 52 9e-07
Alignment gi|XP_003119122.1| PREDICTED: proline-rich nuclear receptor coa... 52 9e-07
Alignment gi|XP_003119121.1| PREDICTED: proline-rich nuclear receptor coa... 52 9e-07
Alignment gi|XP_003119120.1| PREDICTED: proline-rich nuclear receptor coa... 52 9e-07
Alignment gi|XP_003119119.1| PREDICTED: proline-rich nuclear receptor coa... 52 9e-07
>ref|NP_006804.1| proline-rich nuclear receptor coactivator 1 [Homo sapiens].
Length = 327
Score = 397 bits (1019), Expect = e-110
Identities = 208/294 (70%), Positives = 217/294 (73%)
Frame = +1
Query: 142 MTVVSVPQREPLVLGSRLAPMGFSARGYFGALPMVSTXXXXXXXXXXXXXXXXTLFLPHF 321
MTVVSVPQREPLVLG RLAP+GFS+RGYFGALPMV+T TLFLPHF
Sbjct: 1 MTVVSVPQREPLVLGGRLAPLGFSSRGYFGALPMVTTAPPPLPRIPDPRALPPTLFLPHF 60
Query: 322 LGGDGPCLTPQPRAPAPLPNCSLASTGGTXXXXXXXXXXXXXXXXXXGQLPSRFHQYQQH 501
LGGDGPCLTPQPRAPA LPN SLA GGT GQLPSRFHQYQQH
Sbjct: 61 LGGDGPCLTPQPRAPAALPNRSLAVAGGTPRAAPKKRRKKKVRASPAGQLPSRFHQYQQH 120
Query: 502 RPSLEGVRSPATGHSGEQQVPDQXXXXXXXXXXXXXXEEASLFLXXXXXXXXXXPSFRRE 681
RPSLEG RSPATG SG Q+VP E AS L R+E
Sbjct: 121 RPSLEGGRSPATGPSGAQEVPGPAAALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKE 180
Query: 682 VLKSKMGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSV 861
VLKSKMGKSEKIA+PHGQLVHGIHL EQPKINRQKSKYNLPLTKITSAKRNENNFWQDSV
Sbjct: 181 VLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSV 240
Query: 862 SSDIIQKQEKKPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
SSD IQKQEKKPFKN+ENIK+ HLKKSAFLTE+SQKENYAGAKFSDPPSPSVLP
Sbjct: 241 SSDRIQKQEKKPFKNTENIKNSHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLP 294
>ref|XP_003119128.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform
10 [Homo sapiens].
Length = 168
Score = 55.8 bits (133), Expect = 6e-08
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Frame = +1
Query: 673 RREVLKSKMGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQ 852
+R+ K KMG E+ IP Q + Q ++NRQK+K KI K+ + +
Sbjct: 22 QRKGSKLKMGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYN 79
Query: 853 DSVSS-DIIQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
S ++ +Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 80 SSAAAWQAMQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 137
>ref|XP_003119126.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 8
[Homo sapiens].
Length = 139
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 108
>ref|XP_003119125.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 7
[Homo sapiens].
Length = 139
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 108
>ref|XP_003119124.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 6
[Homo sapiens].
Length = 139
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 108
>ref|XP_003119123.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 5
[Homo sapiens].
Length = 139
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 108
>ref|XP_003119122.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 4
[Homo sapiens].
Length = 139
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 108
>ref|XP_003119121.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 3
[Homo sapiens].
Length = 139
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 108
>ref|XP_003119120.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 2
[Homo sapiens].
Length = 139
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 108
>ref|XP_003119119.1| PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 1
[Homo sapiens].
Length = 139
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 697 MGKSEKIAIPHGQLVHGIHLCEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSVSS-DI 873
MG E+ IP Q + Q ++NRQK+K KI K+ + + S ++
Sbjct: 1 MGGGERYNIPAPQSRNVSK--NQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQA 58
Query: 874 IQKQEK-KPFKNSENIKHKHLKKSAFLTEMSQKENYAGAKFSDPPSPSVLP 1023
+Q K K F N+++ + L L + +NYAGAKFS+PPSPSVLP
Sbjct: 59 MQNGGKNKNFPNNQSW-NSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLP 108
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,747,842
Number of extensions: 1006312
Number of successful extensions: 5687
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5633
Number of HSP's successfully gapped: 11
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008092
(1024 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1231 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1231 bits (621), Expect = 0.0
Identities = 630/633 (99%)
Strand = Plus / Minus
Query: 1 gagcggaggctgagggtatttgttgctgcgccgccaccgcccgaaccatggtccgcgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63827876 gagcggaggctgagggtatttgttgctgcgccgccaccgcccgaaccatggtccgcgctt 63827817
Query: 61 ctcacgggcttacctagcagcagccttcgccgccctgtgatctctggccgcacttccttc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63827816 ctcacaggcttacctagcagcagccttcgccgccctgtgatctctggccgcacttccttc 63827757
Query: 121 ttctactcctgctgagccgctatgaccgtcgtttctgtcccccagcgggagccgcttgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63827756 ttctactcctgctgagccgctatgaccgtcgtttctgtcccccagcgggagccgcttgtt 63827697
Query: 181 ctgggcagccgcctggcgcccatgggcttttccgcccgcggttacttcggggccctcccg 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 63827696 ctgggcagccgcctggcgcccatgggcttttccgcccgcggttactttggggccctcccg 63827637
Query: 241 atggtgagcacggctccgccgcctttaccccggatcccggaccccagggcgctgcccccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63827636 atggtgagcacggctccgccgcctttaccccggatcccggaccccagggcgctgcccccc 63827577
Query: 301 accctctttctccctcactttttagggggagacggtccctgtctgacccctcagcctcgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63827576 accctctttctccctcactttttagggggagacggtccctgtctgacccctcagcctcgc 63827517
Query: 361 gccccagcgcctctgcccaactgcagcctcgcctcaacggggggcacccctcgcgcagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63827516 gccccagcgcctctgcccaactgcagcctcgcctcaacggggggcacccctcgcgcagca 63827457
Query: 421 ccaaagaagcggcgaaagaagaaggtgcgggccagcccatcggggcagcttcccagccgc 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 63827456 ccaaagaagcggcgaaagaagaaggtgcgggccagcccgtcggggcagcttcccagccgc 63827397
Query: 481 ttccaccagtaccagcagcaccggccgagcctggaaggcgtgcggagccccgcgacgggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63827396 ttccaccagtaccagcagcaccggccgagcctggaaggcgtgcggagccccgcgacgggc 63827337
Query: 541 cacagtggagagcagcaagtcccggaccaggccgccgcctgggcctcggctcctgcaacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63827336 cacagtggagagcagcaagtcccggaccaggccgccgcctgggcctcggctcctgcaacc 63827277
Query: 601 gcaacccgaactgaagaagcgagccttttcctt 633
|||||||||||||||||||||||||||||||||
Sbjct: 63827276 gcaacccgaactgaagaagcgagccttttcctt 63827244
Score = 634 bits (320), Expect = e-179
Identities = 337/345 (97%)
Strand = Plus / Minus
Query: 680 aggttttaaaatcaaagatgggaaaatcggagaaaattgccattccccacggccagcttg 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63872259 aggttttaaaatcaaagatgggaaaatcggagaaaattgccattccccacggccagcttg 63872200
Query: 740 ttcatggtatacacttgtgtgaacaaccaaagataaacagacagaaaagcaaatataact 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63872199 ttcatggtatacacttgtgtgaacaaccaaagataaacagacagaaaagcaaatataact 63872140
Query: 800 taccactaaccaagatcacctctgcaaaaagaaatgaaaataacttttggcaggattctg 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63872139 taccactaaccaagatcacctctgcaaaaagaaatgaaaataacttttggcaggattctg 63872080
Query: 860 tttcatctgatataattcagaagcaggnnnnnnngccttttaaaaattctgagaacatta 919
||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 63872079 tttcatctgatataattcagaagcaggaaaaaaagcctttaaaaaattctgagaacatta 63872020
Query: 920 aacataagcatttgaagaaatcagcatttctaactgaaatgagtcaaaaggaaaattatg 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63872019 aacataagcatttgaagaaatcagcatttctaactgaaatgagtcaaaaggaaaattatg 63871960
Query: 980 ctggggcaaaatttagtgatccaccttctcctagtgttcttccaa 1024
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63871959 ctggggcaaaatttagtgatccaccttctcctagtgttcttccaa 63871915
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,097,496
Number of extensions: 298
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 2
Length of query: 1024
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1003
Effective length of database: 2,808,413,156
Effective search space: 2816838395468
Effective search space used: 2816838395468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)