Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008094
(1119 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069530.1| caprin-1 [Bos taurus]. 479 e-135
Alignment gi|XP_002687766.1| PREDICTED: C1q and tumor necrosis factor rel... 164 1e-40
Alignment gi|XP_876944.2| PREDICTED: C1q and tumor necrosis factor relate... 164 1e-40
>ref|NP_001069530.1| caprin-1 [Bos taurus].
Length = 708
Score = 479 bits (1234), Expect = e-135
Identities = 246/287 (85%), Positives = 250/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHP TGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 37 SQHPMTGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 96
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 97 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 156
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKLADPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 157 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLADPERDMSLRLNEQYEHASIHLWDLL 216
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQ
Sbjct: 217 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQAAEAEPE 276
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQ+EVESTEYVNRQFMAETQF+SGEKEQV++WTVET EVVN
Sbjct: 277 PVEEYTEQNEVESTEYVNRQFMAETQFSSGEKEQVDDWTVETVEVVN 323
>ref|XP_002687766.1| PREDICTED: C1q and tumor necrosis factor related protein 3-like,
partial [Bos taurus].
Length = 965
Score = 164 bits (416), Expect = 1e-40
Identities = 89/226 (39%), Positives = 133/226 (58%), Gaps = 7/226 (3%)
Frame = +1
Query: 424 DAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQ 603
+AV KY+EV +NLEFAKELQ++F LSQD+ K KK RRE +++ EAE+K+L+T+L++Q
Sbjct: 1 EAVEKYEEVLHNLEFAKELQKTFSGLSQDLLKAQKKAQRREHMLKLEAEKKKLRTILQVQ 60
Query: 604 YVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIH 783
YVL L + V+ D K GLNG F KL PER+ SL + +Q E +S++
Sbjct: 61 YVLQNLMQEHVQKDFKGGLNGAVYLPLKELDYLIKFSKLTCPERNESLSVEDQMEQSSLY 120
Query: 784 LWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDS----THNHQNGLCEEEEAASAPTVE 951
WDLLEG EK V GTTYK +K+++ ++ S YF+S H + + EEE +
Sbjct: 121 FWDLLEGSEKAVVGTTYKHMKDLLSKLLNSGYFESIPVPKHAKEKEVSLEEEMLIKSEKK 180
Query: 952 DQV---XXXXXXXXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQ 1080
Q+ Q E++ E++NR++M E ++S + E+
Sbjct: 181 KQLLKTESVKESESLMELAQPEIQPQEFLNRRYMTEVDYSSKQDEE 226
>ref|XP_876944.2| PREDICTED: C1q and tumor necrosis factor related protein 3-like
isoform 6, partial [Bos taurus].
Length = 965
Score = 164 bits (416), Expect = 1e-40
Identities = 89/226 (39%), Positives = 133/226 (58%), Gaps = 7/226 (3%)
Frame = +1
Query: 424 DAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQ 603
+AV KY+EV +NLEFAKELQ++F LSQD+ K KK RRE +++ EAE+K+L+T+L++Q
Sbjct: 1 EAVEKYEEVLHNLEFAKELQKTFSGLSQDLLKAQKKAQRREHMLKLEAEKKKLRTILQVQ 60
Query: 604 YVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIH 783
YVL L + V+ D K GLNG F KL PER+ SL + +Q E +S++
Sbjct: 61 YVLQNLMQEHVQKDFKGGLNGAVYLPLKELDYLIKFSKLTCPERNESLSVEDQMEQSSLY 120
Query: 784 LWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDS----THNHQNGLCEEEEAASAPTVE 951
WDLLEG EK V GTTYK +K+++ ++ S YF+S H + + EEE +
Sbjct: 121 FWDLLEGSEKAVVGTTYKHMKDLLSKLLNSGYFESIPVPKHAKEKEVSLEEEMLIKSEKK 180
Query: 952 DQV---XXXXXXXXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQ 1080
Q+ Q E++ E++NR++M E ++S + E+
Sbjct: 181 KQLLKTESVKESESLMELAQPEIQPQEFLNRRYMTEVDYSSKQDEE 226
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.312 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,020,162
Number of extensions: 852963
Number of successful extensions: 3041
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3038
Number of HSP's successfully gapped: 3
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008094
(1119 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858229.1| PREDICTED: similar to membrane component chromo... 482 e-136
Alignment gi|XP_858192.1| PREDICTED: similar to membrane component chromo... 482 e-136
Alignment gi|XP_849195.1| PREDICTED: similar to membrane component chromo... 482 e-136
Alignment gi|XP_858109.1| PREDICTED: similar to membrane component chromo... 482 e-136
Alignment gi|XP_852611.1| PREDICTED: similar to C1q domain containing 1 i... 158 8e-39
>ref|XP_858229.1| PREDICTED: similar to membrane component chromosome 11 surface marker
1 isoform 1 isoform 4 [Canis familiaris].
Length = 717
Score = 482 bits (1241), Expect = e-136
Identities = 249/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 47 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 106
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 107 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 166
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKLADPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 167 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLADPERDMSLRLNEQYEHASIHLWDLL 226
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEK VCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 227 EGKEKSVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 286
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 287 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 333
>ref|XP_858192.1| PREDICTED: similar to membrane component chromosome 11 surface marker
1 isoform 1 isoform 3 [Canis familiaris].
Length = 679
Score = 482 bits (1241), Expect = e-136
Identities = 249/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 47 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 106
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 107 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 166
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKLADPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 167 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLADPERDMSLRLNEQYEHASIHLWDLL 226
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEK VCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 227 EGKEKSVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 286
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 287 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 333
>ref|XP_849195.1| PREDICTED: similar to membrane component chromosome 11 surface marker
1 isoform 2 isoform 1 [Canis familiaris].
Length = 702
Score = 482 bits (1241), Expect = e-136
Identities = 249/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 47 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 106
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 107 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 166
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKLADPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 167 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLADPERDMSLRLNEQYEHASIHLWDLL 226
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEK VCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 227 EGKEKSVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 286
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 287 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 333
>ref|XP_858109.1| PREDICTED: similar to membrane component chromosome 11 surface marker
1 isoform 1 isoform 2 [Canis familiaris].
Length = 717
Score = 482 bits (1241), Expect = e-136
Identities = 249/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 47 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 106
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 107 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 166
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKLADPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 167 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLADPERDMSLRLNEQYEHASIHLWDLL 226
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEK VCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 227 EGKEKSVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 286
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 287 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 333
>ref|XP_852611.1| PREDICTED: similar to C1q domain containing 1 isoform 2 [Canis
familiaris].
Length = 296
Score = 158 bits (400), Expect = 8e-39
Identities = 78/154 (50%), Positives = 106/154 (68%)
Frame = +1
Query: 370 DDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQ 549
+DY++R+ GE+LN DQL+AV KY+EV +NLEFAKELQ++F LSQD+ K KK RRE
Sbjct: 135 EDYKDRLKNGEQLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSQDLLKAQKKAQRREH 194
Query: 550 LMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADP 729
+++ EAE+K+L+T+L++QYVL L + V+ D K GLNG F KL P
Sbjct: 195 MLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPLKELDYLIKFSKLTCP 254
Query: 730 ERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTT 831
ER+ SL + +Q E +S++ WDLLEG EK V GTT
Sbjct: 255 ERNESLSVEDQMEQSSLYFWDLLEGSEKAVVGTT 288
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.312 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,278,362
Number of extensions: 841479
Number of successful extensions: 2881
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2872
Number of HSP's successfully gapped: 5
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008094
(1119 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353957.1| PREDICTED: caprin-1 isoform 2 [Sus scrofa]. 485 e-137
Alignment gi|XP_003122930.2| PREDICTED: caprin-1 isoform 1 [Sus scrofa]. 485 e-137
Alignment gi|XP_003355580.1| PREDICTED: caprin-2 [Sus scrofa]. 189 3e-48
>ref|XP_003353957.1| PREDICTED: caprin-1 isoform 2 [Sus scrofa].
Length = 694
Score = 485 bits (1249), Expect = e-137
Identities = 250/287 (87%), Positives = 252/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 39 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 98
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 99 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 158
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKLADPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 159 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLADPERDMSLRLNEQYEHASIHLWDLL 218
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 219 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 278
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 279 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 325
>ref|XP_003122930.2| PREDICTED: caprin-1 isoform 1 [Sus scrofa].
Length = 709
Score = 485 bits (1249), Expect = e-137
Identities = 250/287 (87%), Positives = 252/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 39 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 98
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 99 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 158
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKLADPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 159 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLADPERDMSLRLNEQYEHASIHLWDLL 218
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 219 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 278
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 279 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 325
>ref|XP_003355580.1| PREDICTED: caprin-2 [Sus scrofa].
Length = 1116
Score = 189 bits (479), Expect = 3e-48
Identities = 99/244 (40%), Positives = 148/244 (60%), Gaps = 7/244 (2%)
Frame = +1
Query: 370 DDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQ 549
+DY++R+ GE+LN DQL+AV KY+EV +NLEFAKELQ++F LSQD+ K KK RRE
Sbjct: 134 EDYKDRLKNGEQLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSQDLLKAQKKAQRREH 193
Query: 550 LMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADP 729
+++ EAE+K+L+T+L++QYVL L + V+ D K GLNG F KL P
Sbjct: 194 MLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPLKELDYLIKFSKLTCP 253
Query: 730 ERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDS-----TH 894
ER+ SL + +Q E +S++ WDLLEG EK V GTTYK +K+++ ++ S YF+S T
Sbjct: 254 ERNESLSVEDQMEQSSLYFWDLLEGSEKAVVGTTYKHMKDLLSKLLNSGYFESIPVPKTA 313
Query: 895 NHQNGLCEEEEAASAPTVEDQVXXXXXXXXXXYTE--QSEVESTEYVNRQFMAETQFNSG 1068
+ EEE + + + E Q E++ E++NR++M E ++S
Sbjct: 314 KEKEVSLEEEMLIKSEKKKQSLKTESVKESESLLELAQPEIQPQEFLNRRYMTEVDYSSK 373
Query: 1069 EKEQ 1080
+ E+
Sbjct: 374 QGEE 377
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.312 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,746,968
Number of extensions: 580809
Number of successful extensions: 1782
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1777
Number of HSP's successfully gapped: 3
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008094
(1119 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104762.1| caprin-1 isoform c [Mus musculus]. 481 e-136
Alignment gi|NP_001104761.1| caprin-1 isoform c [Mus musculus]. 481 e-136
Alignment gi|NP_001104760.1| caprin-1 isoform b [Mus musculus]. 481 e-136
Alignment gi|NP_001104759.1| caprin-1 isoform a [Mus musculus]. 481 e-136
Alignment gi|NP_058019.2| caprin-1 isoform a [Mus musculus]. 481 e-136
Alignment gi|NP_853519.2| caprin-2 [Mus musculus]. 192 5e-49
>ref|NP_001104762.1| caprin-1 isoform c [Mus musculus].
Length = 692
Score = 481 bits (1237), Expect = e-136
Identities = 247/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 37 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 96
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 97 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 156
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDD+VRTDLKQGL+GVPI FYKL DPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 157 LGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLL 216
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 217 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 276
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 277 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 323
>ref|NP_001104761.1| caprin-1 isoform c [Mus musculus].
Length = 692
Score = 481 bits (1237), Expect = e-136
Identities = 247/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 37 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 96
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 97 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 156
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDD+VRTDLKQGL+GVPI FYKL DPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 157 LGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLL 216
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 217 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 276
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 277 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 323
>ref|NP_001104760.1| caprin-1 isoform b [Mus musculus].
Length = 698
Score = 481 bits (1237), Expect = e-136
Identities = 247/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 37 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 96
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 97 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 156
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDD+VRTDLKQGL+GVPI FYKL DPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 157 LGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLL 216
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 217 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 276
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 277 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 323
>ref|NP_001104759.1| caprin-1 isoform a [Mus musculus].
Length = 707
Score = 481 bits (1237), Expect = e-136
Identities = 247/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 37 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 96
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 97 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 156
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDD+VRTDLKQGL+GVPI FYKL DPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 157 LGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLL 216
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 217 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 276
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 277 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 323
>ref|NP_058019.2| caprin-1 isoform a [Mus musculus].
Length = 707
Score = 481 bits (1237), Expect = e-136
Identities = 247/287 (86%), Positives = 251/287 (87%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 37 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 96
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 97 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 156
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDD+VRTDLKQGL+GVPI FYKL DPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 157 LGDDDVRTDLKQGLSGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLL 216
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQV
Sbjct: 217 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVAEAEPE 276
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF+SGEKEQV+EWTVET EVVN
Sbjct: 277 PAEEYTEQSEVESTEYVNRQFMAETQFSSGEKEQVDEWTVETVEVVN 323
>ref|NP_853519.2| caprin-2 [Mus musculus].
Length = 1031
Score = 192 bits (487), Expect = 5e-49
Identities = 100/247 (40%), Positives = 151/247 (61%), Gaps = 3/247 (1%)
Frame = +1
Query: 370 DDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQ 549
+DY++R+ GE+LN DQL+AV KY+EV +NLEFAKELQ++F ALSQD+ K KK RRE
Sbjct: 63 EDYKDRLKNGEQLNPDQLEAVEKYEEVLHNLEFAKELQKTFSALSQDLLKAQKKAQRREH 122
Query: 550 LMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADP 729
+++ E E+K+L+T+L++QYVL L + V+ D K GLNG F KL P
Sbjct: 123 MLKLETEKKKLRTMLQIQYVLQNLTQEHVQKDFKGGLNGAMYLPSKELDYLIKFSKLTCP 182
Query: 730 ERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNG 909
ER+ SL + +Q E +S++ WDLLEG EK V GTTYK +K+++ ++ S YF+S +N
Sbjct: 183 ERNESLSVEDQMEQSSLYFWDLLEGSEKTVVGTTYKHVKDLLSKLLHSGYFESVPVLRNS 242
Query: 910 LCEEEEAASAPTVEDQ-VXXXXXXXXXXYTE--QSEVESTEYVNRQFMAETQFNSGEKEQ 1080
+ EE ++ Q + TE Q E++ E++NR++M E +F+ ++
Sbjct: 243 KEKAEEVLMQSEMKKQLLKSESIKESESLTELVQPEIQPQEFLNRRYMTEVKFSRKQENV 302
Query: 1081 VNEWTVE 1101
W +
Sbjct: 303 EQSWEAD 309
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.312 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,626,894
Number of extensions: 720028
Number of successful extensions: 2339
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2330
Number of HSP's successfully gapped: 6
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008094
(1119 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005889.3| caprin-1 isoform 1 [Homo sapiens]. 480 e-135
Alignment gi|NP_976240.1| caprin-1 isoform 2 [Homo sapiens]. 480 e-135
Alignment gi|NP_001193785.1| caprin-2 isoform 4 [Homo sapiens]. 185 8e-47
Alignment gi|NP_115532.3| caprin-2 isoform 3 [Homo sapiens]. 185 8e-47
Alignment gi|NP_001002259.1| caprin-2 isoform 1 [Homo sapiens]. 185 8e-47
Alignment gi|NP_076414.2| caprin-2 isoform 2 [Homo sapiens]. 185 8e-47
>ref|NP_005889.3| caprin-1 isoform 1 [Homo sapiens].
Length = 709
Score = 480 bits (1235), Expect = e-135
Identities = 247/287 (86%), Positives = 248/287 (86%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 39 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 98
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 99 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 158
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKL DPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 159 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLL 218
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYK LKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAP VEDQV
Sbjct: 219 EGKEKPVCGTTYKVLKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPE 278
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF SGEKEQV+EWTVET EVVN
Sbjct: 279 PAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEVVN 325
>ref|NP_976240.1| caprin-1 isoform 2 [Homo sapiens].
Length = 694
Score = 480 bits (1235), Expect = e-135
Identities = 247/287 (86%), Positives = 248/287 (86%)
Frame = +1
Query: 259 SQHPATGTGAVQTEAMKQILGVIDXXXXXXXXXXXXXDDYQERMNKGERLNQDQLDAVSK 438
SQHPATGTGAVQTEAMKQILGVID DDYQERMNKGERLNQDQLDAVSK
Sbjct: 39 SQHPATGTGAVQTEAMKQILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSK 98
Query: 439 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 618
YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK
Sbjct: 99 YQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDK 158
Query: 619 LGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADPERDMSLRLNEQYEHASIHLWDLL 798
LGDDEVRTDLKQGLNGVPI FYKL DPERDMSLRLNEQYEHASIHLWDLL
Sbjct: 159 LGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLL 218
Query: 799 EGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPTVEDQVXXXXXX 978
EGKEKPVCGTTYK LKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAP VEDQV
Sbjct: 219 EGKEKPVCGTTYKVLKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPE 278
Query: 979 XXXXYTEQSEVESTEYVNRQFMAETQFNSGEKEQVNEWTVETFEVVN 1119
YTEQSEVESTEYVNRQFMAETQF SGEKEQV+EWTVET EVVN
Sbjct: 279 PAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEVVN 325
>ref|NP_001193785.1| caprin-2 isoform 4 [Homo sapiens].
Length = 905
Score = 185 bits (469), Expect = 8e-47
Identities = 100/249 (40%), Positives = 149/249 (59%), Gaps = 12/249 (4%)
Frame = +1
Query: 370 DDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQ 549
+DY++R+ GE LN DQL+AV KY+EV +NLEFAKELQ++F LS D+ K KK RRE
Sbjct: 144 EDYKDRLKSGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREH 203
Query: 550 LMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADP 729
+++ EAE+K+L+T+L++QYVL L + V+ D K GLNG F KL P
Sbjct: 204 MLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCP 263
Query: 730 ERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNG 909
ER+ SL + +Q E +S++ WDLLEG EK V GTTYK LK+++ ++ S YF+S +N
Sbjct: 264 ERNESLSVEDQMEQSSLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKN- 322
Query: 910 LCEEEEAASAPTVEDQVXXXXXXXXXXYTE------------QSEVESTEYVNRQFMAET 1053
+E+E P E+ + TE Q E++ E++NR++M E
Sbjct: 323 -AKEKE---VPLEEEMLIQSEKKTQLSKTESVKESESLMEFAQPEIQPQEFLNRRYMTEV 378
Query: 1054 QFNSGEKEQ 1080
+++ + E+
Sbjct: 379 DYSNKQGEE 387
>ref|NP_115532.3| caprin-2 isoform 3 [Homo sapiens].
Length = 960
Score = 185 bits (469), Expect = 8e-47
Identities = 100/249 (40%), Positives = 149/249 (59%), Gaps = 12/249 (4%)
Frame = +1
Query: 370 DDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQ 549
+DY++R+ GE LN DQL+AV KY+EV +NLEFAKELQ++F LS D+ K KK RRE
Sbjct: 144 EDYKDRLKSGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREH 203
Query: 550 LMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADP 729
+++ EAE+K+L+T+L++QYVL L + V+ D K GLNG F KL P
Sbjct: 204 MLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCP 263
Query: 730 ERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNG 909
ER+ SL + +Q E +S++ WDLLEG EK V GTTYK LK+++ ++ S YF+S +N
Sbjct: 264 ERNESLSVEDQMEQSSLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKN- 322
Query: 910 LCEEEEAASAPTVEDQVXXXXXXXXXXYTE------------QSEVESTEYVNRQFMAET 1053
+E+E P E+ + TE Q E++ E++NR++M E
Sbjct: 323 -AKEKE---VPLEEEMLIQSEKKTQLSKTESVKESESLMEFAQPEIQPQEFLNRRYMTEV 378
Query: 1054 QFNSGEKEQ 1080
+++ + E+
Sbjct: 379 DYSNKQGEE 387
>ref|NP_001002259.1| caprin-2 isoform 1 [Homo sapiens].
Length = 1127
Score = 185 bits (469), Expect = 8e-47
Identities = 100/249 (40%), Positives = 149/249 (59%), Gaps = 12/249 (4%)
Frame = +1
Query: 370 DDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQ 549
+DY++R+ GE LN DQL+AV KY+EV +NLEFAKELQ++F LS D+ K KK RRE
Sbjct: 144 EDYKDRLKSGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREH 203
Query: 550 LMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADP 729
+++ EAE+K+L+T+L++QYVL L + V+ D K GLNG F KL P
Sbjct: 204 MLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCP 263
Query: 730 ERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNG 909
ER+ SL + +Q E +S++ WDLLEG EK V GTTYK LK+++ ++ S YF+S +N
Sbjct: 264 ERNESLSVEDQMEQSSLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKN- 322
Query: 910 LCEEEEAASAPTVEDQVXXXXXXXXXXYTE------------QSEVESTEYVNRQFMAET 1053
+E+E P E+ + TE Q E++ E++NR++M E
Sbjct: 323 -AKEKE---VPLEEEMLIQSEKKTQLSKTESVKESESLMEFAQPEIQPQEFLNRRYMTEV 378
Query: 1054 QFNSGEKEQ 1080
+++ + E+
Sbjct: 379 DYSNKQGEE 387
>ref|NP_076414.2| caprin-2 isoform 2 [Homo sapiens].
Length = 1077
Score = 185 bits (469), Expect = 8e-47
Identities = 100/249 (40%), Positives = 149/249 (59%), Gaps = 12/249 (4%)
Frame = +1
Query: 370 DDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARREQ 549
+DY++R+ GE LN DQL+AV KY+EV +NLEFAKELQ++F LS D+ K KK RRE
Sbjct: 144 EDYKDRLKSGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREH 203
Query: 550 LMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPIXXXXXXXXXXXFYKLADP 729
+++ EAE+K+L+T+L++QYVL L + V+ D K GLNG F KL P
Sbjct: 204 MLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCP 263
Query: 730 ERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKALKEIVERVFQSNYFDSTHNHQNG 909
ER+ SL + +Q E +S++ WDLLEG EK V GTTYK LK+++ ++ S YF+S +N
Sbjct: 264 ERNESLSVEDQMEQSSLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKN- 322
Query: 910 LCEEEEAASAPTVEDQVXXXXXXXXXXYTE------------QSEVESTEYVNRQFMAET 1053
+E+E P E+ + TE Q E++ E++NR++M E
Sbjct: 323 -AKEKE---VPLEEEMLIQSEKKTQLSKTESVKESESLMEFAQPEIQPQEFLNRRYMTEV 378
Query: 1054 QFNSGEKEQ 1080
+++ + E+
Sbjct: 379 DYSNKQGEE 387
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.312 0.128 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,820,988
Number of extensions: 839517
Number of successful extensions: 2771
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2760
Number of HSP's successfully gapped: 6
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008094
(1119 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 478 e-132
>Sscrofa_Chr02
|| Length = 162569375
Score = 478 bits (241), Expect = e-132
Identities = 241/241 (100%)
Strand = Plus / Minus
Query: 511 attcagaaaacaataaagaagacagcacgtcgggagcagctcatgagagaagaagctgaa 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29219660 attcagaaaacaataaagaagacagcacgtcgggagcagctcatgagagaagaagctgaa 29219601
Query: 571 cagaaacgtttaaaaactgtacttgagctgcagtatgttttggacaaattgggagatgat 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29219600 cagaaacgtttaaaaactgtacttgagctgcagtatgttttggacaaattgggagatgat 29219541
Query: 631 gaagtgcggactgacttgaagcaaggtttgaatggagtgccaatattgtctgaagaggaa 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29219540 gaagtgcggactgacttgaagcaaggtttgaatggagtgccaatattgtctgaagaggaa 29219481
Query: 691 ttgtcattgttggatgagttctacaaattagcagaccctgaacgggacatgagcttgagg 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29219480 ttgtcattgttggatgagttctacaaattagcagaccctgaacgggacatgagcttgagg 29219421
Query: 751 t 751
|
Sbjct: 29219420 t 29219420
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1 ctcactagcagcggctctcggtgcagcggggaaagggcgaagcggcctgcgcccacggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29242757 ctcactagcagcggctctcggtgcagcggggaaagggcgaagcggcctgcgcccacggag 29242698
Query: 61 cgcacgacactgcccagaacgcaccgccacccttgccccttcagccgccccctcgggatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29242697 cgcacgacactgcccagaacgcaccgccacccttgccccttcagccgccccctcgggatc 29242638
Query: 121 tccagcggcctccgcgcgcgcacg 144
||||||||||||||||||||||||
Sbjct: 29242637 tccagcggcctccgcgcgcgcacg 29242614
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 833 ataaagctctaaaggaaattgttgagcgtgttttccagtcaaactactttgacagcaccc 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29216402 ataaagctctaaaggaaattgttgagcgtgttttccagtcaaactactttgacagcaccc 29216343
Query: 893 acaaccaccagaatgggctctgtgaggaagaagaggcagcctcagcaccgacggttgaag 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29216342 acaaccaccagaatgggctctgtgaggaagaagaggcagcctcagcaccgacggttgaag 29216283
Query: 953 accaggtagctgaagctg 970
||||||||||||||||||
Sbjct: 29216282 accaggtagctgaagctg 29216265
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 258 ttctcagcaccccgcgaccggcaccggcgctgtccagaccgaggccatgaagcagattct 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29241936 ttctcagcaccccgcgaccggcaccggcgctgtccagaccgaggccatgaagcagattct 29241877
Query: 318 cggggtgatcgacaagaaacttcggaacctggagaagaaaaagg 361
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29241876 cggggtgatcgacaagaaacttcggaacctggagaagaaaaagg 29241833
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 423 ggatgctgtatctaagtaccaggaagttacaaataacttggagtttgcaaaagaattaca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29224850 ggatgctgtatctaagtaccaggaagttacaaataacttggagtttgcaaaagaattaca 29224791
Query: 483 aaggagtttcatggcattaagccaagat 510
||||||||||||||||||||||||||||
Sbjct: 29224790 aaggagtttcatggcattaagccaagat 29224763
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 748 aggttgaatgagcagtatgaacatgcctccattcacctgtgggacttgctagaaggaaag 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29219331 aggttgaatgagcagtatgaacatgcctccattcacctgtgggacttgctagaaggaaag 29219272
Query: 808 gaaaaacctgtatgtggaacaacct 832
|||||||||||||||||||||||||
Sbjct: 29219271 gaaaaacctgtatgtggaacaacct 29219247
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 144 gatgccctcggccaccagccacagcggaagcggcagcaagtcgtccggaccgccaccccc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29242050 gatgccctcggccaccagccacagcggaagcggcagcaagtcgtccggaccgccaccccc 29241991
Query: 204 gtcgggttcctccgggagtga 224
|||||||||||||||||||||
Sbjct: 29241990 gtcgggttcctccgggagtga 29241970
Score = 157 bits (79), Expect = 2e-35
Identities = 88/91 (96%)
Strand = Plus / Minus
Query: 1022 agtatgtaaatagacaatttatggcagaaacacagttcaacagtggtgaaaaggagcagg 1081
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 29215002 agtatgtaaatagacaatttatggcagaaacacagttcagcagtggtgaaaaggagcagg 29214943
Query: 1082 taaatgagtggacagtcgaaacatttgaggt 1112
|| |||||||||||||||||||| |||||||
Sbjct: 29214942 tagatgagtggacagtcgaaacagttgaggt 29214912
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 359 agggcaagcttgatgattaccaggaacgaatgaacaaaggggaaaggcttaatcaagatc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29225006 agggcaagcttgatgattaccaggaacgaatgaacaaaggggaaaggcttaatcaagatc 29224947
Query: 419 aactgg 424
||||||
Sbjct: 29224946 aactgg 29224941
Score = 99.6 bits (50), Expect = 3e-18
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 970 gaacctgagccagcagaagaatacactgaacaaagtgaagtcgaatccacagag 1023
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 29215131 gaacctgagccagcagaagaatacactgaacaaagtgaagtcgaatcaacagag 29215078
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,283,204
Number of extensions: 188
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 10
Length of query: 1119
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1098
Effective length of database: 2,808,413,156
Effective search space: 3083637645288
Effective search space used: 3083637645288
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)