Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008095
(857 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070989.1| insulin-like peptide INSL6 precursor [Bos ta... 51 1e-06
>ref|NP_001070989.1| insulin-like peptide INSL6 precursor [Bos taurus].
Length = 205
Score = 50.8 bits (120), Expect = 1e-06
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 23/205 (11%)
Frame = +3
Query: 111 MPRLFSYLLGVWLLLSQLPREIPGQSTNDFIKA---CGRELVRLWVEICGSVSWGRTA-- 275
MPR LG LLL ++ RE+ ND +A CG+ L+ V++CG V+W
Sbjct: 1 MPRFLYLCLG--LLLVRVSREL-----NDISRARRLCGQHLLHEIVKLCGDVNWSHVEKE 53
Query: 276 ------LSLEEPQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLR 437
LS ++E+ P + S T + + VP + +A + + SL
Sbjct: 54 KPFTQLLSQASEKVESFIPDRSESSQTT--FPVWRRATNPVPTSASQEEAINNMKMQSLP 111
Query: 438 ELQQSALKDSNLNFEEFKKIILNRQN---------EAEDKSLLELK---NLGLDKHSRKK 581
E Q K +NL F+ ++ + Q+ E + K+ ++K NL H ++K
Sbjct: 112 EYQY---KKANLPFKTRQEESSSSQDISPYIHEIIEFQKKNTNKIKTLSNLFWGNHPQRK 168
Query: 582 RLFRMTLSEKCCQVGCIRKDIARLC 656
R SEKCCQ GC ++++ C
Sbjct: 169 R---RGYSEKCCQKGCTKEELIIAC 190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,651,528
Number of extensions: 731405
Number of successful extensions: 2157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2156
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 184
Effective length of database: 14,339,486
Effective search space: 2638465424
Effective search space used: 2638465424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008095
(857 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003132.1| prorelaxin precursor [Canis lupus familiaris]. 176 2e-44
>ref|NP_001003132.1| prorelaxin precursor [Canis lupus familiaris].
Length = 177
Score = 176 bits (447), Expect = 2e-44
Identities = 98/178 (55%), Positives = 122/178 (68%), Gaps = 1/178 (0%)
Frame = +3
Query: 126 SYLLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLEEPQLET 305
S+LLGVWLLLSQLPREIP +KACGR+ VRL +E+CGS+ WGR A L E + +
Sbjct: 7 SHLLGVWLLLSQLPREIPATDDKK-LKACGRDYVRLQIEVCGSIWWGRKAGQLRERRQIS 65
Query: 306 GPPAETMPSSITKDAEILKMMLEFVPNLPQELK-ATLSERQPSLRELQQSALKDSNLNFE 482
P AE +PSSI D EIL +ML+ +P +PQEL+ AT S ++ LREL L+DSNLN E
Sbjct: 66 EPLAEVVPSSIINDPEILSLMLQSIPGMPQELRIATRSGKEKLLREL-HFVLEDSNLNLE 124
Query: 483 EFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIARLC 656
E KK LN Q EAEDKSL + LDKH RKKR + +S+KCC VGC R+++A C
Sbjct: 125 EMKKTFLNTQFEAEDKSLSK-----LDKHPRKKRDNYIKMSDKCCNVGCTRRELASRC 177
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,669,801
Number of extensions: 730245
Number of successful extensions: 2366
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2363
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 183
Effective length of database: 15,474,232
Effective search space: 2831784456
Effective search space used: 2831784456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008095
(857 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121965.1| PREDICTED: prorelaxin-like [Sus scrofa]. 364 e-101
Alignment gi|NP_999037.1| prorelaxin precursor [Sus scrofa]. 362 e-100
Alignment gi|XP_001926048.1| PREDICTED: insulin-like peptide INSL6-like [... 53 2e-07
>ref|XP_003121965.1| PREDICTED: prorelaxin-like [Sus scrofa].
Length = 182
Score = 364 bits (934), Expect = e-101
Identities = 181/182 (99%), Positives = 182/182 (100%)
Frame = +3
Query: 111 MPRLFSYLLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLEE 290
MPRLFSY+LGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLEE
Sbjct: 1 MPRLFSYILGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLEE 60
Query: 291 PQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQSALKDSN 470
PQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQSALKDSN
Sbjct: 61 PQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQSALKDSN 120
Query: 471 LNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIAR 650
LNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIAR
Sbjct: 121 LNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIAR 180
Query: 651 LC 656
LC
Sbjct: 181 LC 182
>ref|NP_999037.1| prorelaxin precursor [Sus scrofa].
Length = 182
Score = 362 bits (930), Expect = e-100
Identities = 181/182 (99%), Positives = 181/182 (99%)
Frame = +3
Query: 111 MPRLFSYLLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLEE 290
MPRLFSYLLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLEE
Sbjct: 1 MPRLFSYLLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLEE 60
Query: 291 PQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQSALKDSN 470
PQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQSA KDSN
Sbjct: 61 PQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQSASKDSN 120
Query: 471 LNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIAR 650
LNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIAR
Sbjct: 121 LNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIAR 180
Query: 651 LC 656
LC
Sbjct: 181 LC 182
>ref|XP_001926048.1| PREDICTED: insulin-like peptide INSL6-like [Sus scrofa].
Length = 213
Score = 52.8 bits (125), Expect = 2e-07
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 19/201 (9%)
Frame = +3
Query: 111 MPRLFSYLLGVWLLLSQLPREIPGQSTNDFIKA---CGRELVRLWVEICGSVSWGRTALS 281
MPRL LG+ +L LP + ND +A CGR L++ V +CG+VSW +
Sbjct: 1 MPRL----LGLCVLWLGLPLVRFSRELNDISRARKLCGRHLLKEIVRLCGNVSWSQ--FE 54
Query: 282 LEEPQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQP----SLRELQQ 449
E P AE + + I E + +++ + S+ + ++ L +
Sbjct: 55 EENPLTHLLSQAEQVETFIPDRLESSQTTFSVWGRGSRQVSTSASQEEAINNLKMKSLHE 114
Query: 450 SALKDSNLNFEEFKKIILNRQN------------EAEDKSLLELKNLGLDKHSRKKRLFR 593
K +NL F+ ++I + Q+ + + L NL H ++K R
Sbjct: 115 YQYKKANLPFKTRQEIFSSTQDINPYIREIVEFQKKNTNNFKTLSNLFWGYHPQRK---R 171
Query: 594 MTLSEKCCQVGCIRKDIARLC 656
SEKCC GC +++++ C
Sbjct: 172 RGYSEKCCLKGCTKEELSIAC 192
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,509,717
Number of extensions: 484635
Number of successful extensions: 1348
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1346
Number of HSP's successfully gapped: 3
Length of query: 285
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 187
Effective length of database: 8,904,026
Effective search space: 1665052862
Effective search space used: 1665052862
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008095
(857 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035402.2| prorelaxin 1 precursor [Mus musculus]. 140 1e-33
>ref|NP_035402.2| prorelaxin 1 precursor [Mus musculus].
Length = 185
Score = 140 bits (354), Expect = 1e-33
Identities = 89/181 (49%), Positives = 109/181 (60%), Gaps = 2/181 (1%)
Frame = +3
Query: 117 RLFSYLLGVWLLLSQLPREIPGQSTND-FIKACGRELVRLWVEICGSVSWGRTALSLEEP 293
R LLG WLLLSQ R + D FI+ CGRE R ++ICG+ S GR ALS EEP
Sbjct: 4 RFLLQLLGFWLLLSQPCRTRVSEEWMDGFIRMCGREYARELIKICGA-SVGRLALSQEEP 62
Query: 294 QLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQS-ALKDSN 470
L E +PS I KDAE L+ +PNL +ELKA LSE Q SL ELQ + L DS
Sbjct: 63 ALLARQATEVVPSFINKDAEPFDTTLKCLPNLSEELKAVLSEAQASLPELQHAPVLSDSV 122
Query: 471 LNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIAR 650
++ E FKK + ++ EAED S LK L D HSRKKR +S++CC VGC R+ IA+
Sbjct: 123 VSLEGFKKTLHDKLGEAEDGSPPGLKYLQSDTHSRKKRESGGLMSQQCCHVGCSRRSIAK 182
Query: 651 L 653
L
Sbjct: 183 L 183
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,963,569
Number of extensions: 615591
Number of successful extensions: 1890
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1882
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 185
Effective length of database: 12,613,959
Effective search space: 2333582415
Effective search space used: 2333582415
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008095
(857 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_604390.1| prorelaxin H2 isoform 1 preproprotein [Homo sap... 189 2e-48
Alignment gi|NP_008842.1| prorelaxin H1 preproprotein [Homo sapiens]. 188 5e-48
Alignment gi|NP_002186.1| early placenta insulin-like peptide precursor [... 61 1e-09
Alignment gi|NP_005050.2| prorelaxin H2 isoform 2 [Homo sapiens]. 59 4e-09
>ref|NP_604390.1| prorelaxin H2 isoform 1 preproprotein [Homo sapiens].
Length = 185
Score = 189 bits (481), Expect = 2e-48
Identities = 103/185 (55%), Positives = 123/185 (66%), Gaps = 3/185 (1%)
Frame = +3
Query: 111 MPRLFSY-LLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLE 287
MPRLF + LLGV LLL+Q R + + IK CGRELVR + ICG +W + +LS E
Sbjct: 1 MPRLFFFHLLGVCLLLNQFSRAVADSWMEEVIKLCGRELVRAQIAICGMSTWSKRSLSQE 60
Query: 288 EPQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQ--SALK 461
+ P AE +PS I KD E + MM EFV NLPQELK TLSE QP+L +LQQ LK
Sbjct: 61 DAPQTPRPVAEIVPSFINKDTETINMMSEFVANLPQELKLTLSEMQPALPQLQQHVPVLK 120
Query: 462 DSNLNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKD 641
DS+L FEEFKK+I NRQ+EA D S ELK LGLD HSRKKR L+ KCC VGC ++
Sbjct: 121 DSSLLFEEFKKLIRNRQSEAADSSPSELKYLGLDTHSRKKRQLYSALANKCCHVGCTKRS 180
Query: 642 IARLC 656
+AR C
Sbjct: 181 LARFC 185
>ref|NP_008842.1| prorelaxin H1 preproprotein [Homo sapiens].
Length = 185
Score = 188 bits (478), Expect = 5e-48
Identities = 102/185 (55%), Positives = 127/185 (68%), Gaps = 3/185 (1%)
Frame = +3
Query: 111 MPRLFSY-LLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLE 287
MPRLF + LL LLL+Q R + + +D IK CGRELVR + ICG +W + +LS E
Sbjct: 1 MPRLFLFHLLEFCLLLNQFSRAVAAKWKDDVIKLCGRELVRAQIAICGMSTWSKRSLSQE 60
Query: 288 EPQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQ--SALK 461
+ P AE +PS I KD E + +MLEF+ NLP ELKA LSERQPSL ELQQ ALK
Sbjct: 61 DAPQTPRPVAEIVPSFINKDTETIIIMLEFIANLPPELKAALSERQPSLPELQQYVPALK 120
Query: 462 DSNLNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKD 641
DSNL+FEEFKK+I NRQ+EA D + ELK LGLD HS+KKR + L EKCC +GC ++
Sbjct: 121 DSNLSFEEFKKLIRNRQSEAADSNPSELKYLGLDTHSQKKRRPYVALFEKCCLIGCTKRS 180
Query: 642 IARLC 656
+A+ C
Sbjct: 181 LAKYC 185
>ref|NP_002186.1| early placenta insulin-like peptide precursor [Homo sapiens].
Length = 139
Score = 61.2 bits (147), Expect = 1e-09
Identities = 61/183 (33%), Positives = 73/183 (39%), Gaps = 1/183 (0%)
Frame = +3
Query: 111 MPRLF-SYLLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLE 287
M LF SYL +WLLLSQL RE S ++ CG + + C T
Sbjct: 1 MASLFRSYLPAIWLLLSQLLRE----SLAAELRGCGPRFGKHLLSYCPMPEKTFTTTP-G 55
Query: 288 EPQLETGPPAETMPSSITKDAEILKMMLEFVPNLPQELKATLSERQPSLRELQQSALKDS 467
LE+G P E + +S KD + L EF+PNL ELK LSE QPSL
Sbjct: 56 GWLLESGRPKEMVSTSNNKDGQALGTTSEFIPNLSPELKKPLSEGQPSL----------- 104
Query: 468 NLNFEEFKKIILNRQNEAEDKSLLELKNLGLDKHSRKKRLFRMTLSEKCCQVGCIRKDIA 647
KKIIL SRKKR R CC+V C
Sbjct: 105 -------KKIIL----------------------SRKKRSGRHRFDPFCCEVICDDGTSV 135
Query: 648 RLC 656
+LC
Sbjct: 136 KLC 138
>ref|NP_005050.2| prorelaxin H2 isoform 2 [Homo sapiens].
Length = 117
Score = 59.3 bits (142), Expect = 4e-09
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +3
Query: 111 MPRLFSY-LLGVWLLLSQLPREIPGQSTNDFIKACGRELVRLWVEICGSVSWGRTALSLE 287
MPRLF + LLGV LLL+Q R + + IK CGRELVR + ICG +W + +LS E
Sbjct: 1 MPRLFFFHLLGVCLLLNQFSRAVADSWMEEVIKLCGRELVRAQIAICGMSTWSKRSLSQE 60
Query: 288 E----PQLETGPPAETMPSSITKD 347
+ P+ G +T+ I+ D
Sbjct: 61 DAPQTPRPVAGDFIQTVSLGISPD 84
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,227,205
Number of extensions: 724476
Number of successful extensions: 2229
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2223
Number of HSP's successfully gapped: 4
Length of query: 285
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 184
Effective length of database: 14,967,800
Effective search space: 2754075200
Effective search space used: 2754075200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008095
(857 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1033 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1033 bits (521), Expect = 0.0
Identities = 521/521 (100%)
Strand = Plus / Plus
Query: 316 cagaaaccatgccatcctccatcaccaaagatgcagaaatcttaaagatgatgttggaat 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242502974 cagaaaccatgccatcctccatcaccaaagatgcagaaatcttaaagatgatgttggaat 242503033
Query: 376 ttgttcctaatttgccacaggagctgaaggcaacattgtctgagaggcaaccatcactga 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242503034 ttgttcctaatttgccacaggagctgaaggcaacattgtctgagaggcaaccatcactga 242503093
Query: 436 gagagctacaacaatctgcattaaaggattcgaatcttaactttgaagaatttaagaaaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242503094 gagagctacaacaatctgcattaaaggattcgaatcttaactttgaagaatttaagaaaa 242503153
Query: 496 ttattcttaacagacaaaatgaagcagaagacaaaagtcttttagaattaaaaaacttag 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242503154 ttattcttaacagacaaaatgaagcagaagacaaaagtcttttagaattaaaaaacttag 242503213
Query: 556 gtttagataaacattccagaaaaaagagactgttccgtatgacactgagcgagaaatgtt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242503214 gtttagataaacattccagaaaaaagagactgttccgtatgacactgagcgagaaatgtt 242503273
Query: 616 gtcaagtaggttgtatcagaaaagatattgctagattatgctgaaaaggagctaatgata 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242503274 gtcaagtaggttgtatcagaaaagatattgctagattatgctgaaaaggagctaatgata 242503333
Query: 676 tattttatataatgttcacatgtattctcagtgacatattcacttatgcctctgtcaccc 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242503334 tattttatataatgttcacatgtattctcagtgacatattcacttatgcctctgtcaccc 242503393
Query: 736 actgattattagcactgtttagtgtttaggtttttcattttatgtgtaagaaaatgtccc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242503394 actgattattagcactgtttagtgtttaggtttttcattttatgtgtaagaaaatgtccc 242503453
Query: 796 ttgcattaatgtagtttctgctaataatatttttttaaact 836
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 242503454 ttgcattaatgtagtttctgctaataatatttttttaaact 242503494
Score = 617 bits (311), Expect = e-174
Identities = 314/315 (99%)
Strand = Plus / Plus
Query: 4 aaagcagcctaagggccaggattggcacacacaagccagtaggctacagcagctgcagta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242497132 aaagcagcctaagggccaggattggcacacacaagccagtaggctacagcagctgcagta 242497191
Query: 64 tctagagaaaggctgaaacgcctggagcagaagagatcaggtccaggatgccgcgcctgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242497192 tctagagaaaggctgaaacgcctggagcagaagagatcaggtccaggatgccgcgcctgt 242497251
Query: 124 tctcctacctcctaggtgtctggctgctcctgagccaacttcccagagaaatcccaggcc 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242497252 tctcctacatcctaggtgtctggctgctcctgagccaacttcccagagaaatcccaggcc 242497311
Query: 184 agagtacgaacgattttattaaggcatgcggccgagaattagtccgtctgtgggtggaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242497312 agagtacgaacgattttattaaggcatgcggccgagaattagtccgtctgtgggtggaga 242497371
Query: 244 tctgtggctccgtctcctggggaagaactgctctcagcctggaagagcctcagctggaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242497372 tctgtggctccgtctcctggggaagaactgctctcagcctggaagagcctcagctggaaa 242497431
Query: 304 ctggacccccggcag 318
|||||||||||||||
Sbjct: 242497432 ctggacccccggcag 242497446
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,651,095
Number of extensions: 308
Number of successful extensions: 308
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 2
Length of query: 857
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 836
Effective length of database: 2,808,413,156
Effective search space: 2347833398416
Effective search space used: 2347833398416
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)