Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008096
(1255 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073059.1| SCAN domain-containing protein 1 [Bos taurus]. 136 4e-32
Alignment gi|NP_001098840.1| SCAN domain-containing protein 1-like [Bos t... 66 6e-11
Alignment gi|XP_002688816.1| PREDICTED: SCAN domain containing protein 1-... 60 5e-09
Alignment gi|XP_001254653.2| PREDICTED: SCAN domain containing protein 1-... 60 5e-09
Alignment gi|NP_001069627.1| zinc finger and SCAN domain containing 25 [B... 59 7e-09
Alignment gi|XP_002695501.1| PREDICTED: tigger transposable element deriv... 58 2e-08
Alignment gi|XP_002695500.1| PREDICTED: tigger transposable element deriv... 58 2e-08
Alignment gi|XP_593949.3| PREDICTED: tigger transposable element derived ... 58 2e-08
Alignment gi|XP_001790607.1| PREDICTED: tigger transposable element deriv... 58 2e-08
Alignment gi|XP_002696852.1| PREDICTED: zinc finger and SCAN domain conta... 58 2e-08
>ref|NP_001073059.1| SCAN domain-containing protein 1 [Bos taurus].
Length = 178
Score = 136 bits (342), Expect = 4e-32
Identities = 88/179 (49%), Positives = 92/179 (51%)
Frame = +2
Query: 440 MAATELSLAATGSLALPLGKEEGAGPSSGPERDSADSFSTXXXXXXXXXXXXXXXXVAEE 619
MAATE SLA GS A P GKEEGAGPSSG E D A S ST V E
Sbjct: 1 MAATEQSLAPAGSSAPPSGKEEGAGPSSGTEGDPAGSSSTPEAPSIPDSSNPSAT-VPEA 59
Query: 620 NPTPHSAASASLELPLGPXXXXXXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXXXDAA 799
N P +A SA+L+LP+GP ET DAA
Sbjct: 60 NVKPPAAGSAALDLPIGPAPQGPAPVAEASPRSPPGPGGSRPGPETFRQRFRQFRYQDAA 119
Query: 800 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRITG 976
GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ TDVRITG
Sbjct: 120 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 178
>ref|NP_001098840.1| SCAN domain-containing protein 1-like [Bos taurus].
Length = 116
Score = 66.2 bits (160), Expect = 6e-11
Identities = 35/62 (56%), Positives = 38/62 (61%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRI 970
DAAGPR+ R L+EL+ QWLRPDI TKEQIVEMLVQEQ VRI
Sbjct: 55 DAAGPRDVLRHLQELAGQWLRPDIHTKEQIVEMLVQEQFQAVLPEELRAWALRCQPGVRI 114
Query: 971 TG 976
TG
Sbjct: 115 TG 116
>ref|XP_002688816.1| PREDICTED: SCAN domain containing protein 1-like [Bos taurus].
Length = 113
Score = 59.7 bits (143), Expect = 5e-09
Identities = 32/62 (51%), Positives = 36/62 (58%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRI 970
DAAGPR R L++LS QWLRPDI KE++VEMLVQEQ VRI
Sbjct: 52 DAAGPRGILRHLQQLSGQWLRPDIHMKEKLVEMLVQEQFQAVLPEELRPWAQRCQPGVRI 111
Query: 971 TG 976
TG
Sbjct: 112 TG 113
>ref|XP_001254653.2| PREDICTED: SCAN domain containing protein 1-like [Bos taurus].
Length = 113
Score = 59.7 bits (143), Expect = 5e-09
Identities = 32/62 (51%), Positives = 36/62 (58%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRI 970
DAAGPR R L++LS QWLRPDI KE++VEMLVQEQ VRI
Sbjct: 52 DAAGPRGILRHLQQLSGQWLRPDIHMKEKLVEMLVQEQFQAVLPEELRPWAQRCQPGVRI 111
Query: 971 TG 976
TG
Sbjct: 112 TG 113
>ref|NP_001069627.1| zinc finger and SCAN domain containing 25 [Bos taurus].
Length = 152
Score = 59.3 bits (142), Expect = 7e-09
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGP+EA R+L+EL RQWLRP++ TKEQI+E+LV EQ
Sbjct: 52 EAAGPQEALRELQELCRQWLRPELHTKEQILELLVLEQ 89
>ref|XP_002695501.1| PREDICTED: tigger transposable element derived 6-like isoform 2
[Bos taurus].
Length = 736
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPREA QLREL RQWLRP++ +KEQ++E+LV EQ
Sbjct: 58 EAAGPREALVQLRELCRQWLRPEVHSKEQMLELLVLEQ 95
>ref|XP_002695500.1| PREDICTED: tigger transposable element derived 6-like isoform 1
[Bos taurus].
Length = 736
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPREA QLREL RQWLRP++ +KEQ++E+LV EQ
Sbjct: 58 EAAGPREALVQLRELCRQWLRPEVHSKEQMLELLVLEQ 95
>ref|XP_593949.3| PREDICTED: tigger transposable element derived 6-like isoform 2
[Bos taurus].
Length = 736
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPREA QLREL RQWLRP++ +KEQ++E+LV EQ
Sbjct: 58 EAAGPREALVQLRELCRQWLRPEVHSKEQMLELLVLEQ 95
>ref|XP_001790607.1| PREDICTED: tigger transposable element derived 6-like isoform 1
[Bos taurus].
Length = 736
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPREA QLREL RQWLRP++ +KEQ++E+LV EQ
Sbjct: 58 EAAGPREALVQLRELCRQWLRPEVHSKEQMLELLVLEQ 95
>ref|XP_002696852.1| PREDICTED: zinc finger and SCAN domain containing 2-like [Bos
taurus].
Length = 849
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ AGPREAF QL EL +WLRP++RTKEQIVE+LV EQ
Sbjct: 27 EVAGPREAFSQLWELCCRWLRPEVRTKEQIVELLVLEQ 64
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,356,922
Number of extensions: 919056
Number of successful extensions: 4134
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 4124
Number of HSP's successfully gapped: 68
Length of query: 418
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 313
Effective length of database: 14,207,134
Effective search space: 4446832942
Effective search space used: 4446832942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008096
(1255 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865437.1| PREDICTED: similar to SCAN domain-containing pr... 138 1e-32
Alignment gi|XP_852290.1| PREDICTED: similar to SCAN domain-containing pr... 138 1e-32
Alignment gi|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (... 60 4e-09
Alignment gi|XP_546971.2| PREDICTED: similar to zinc finger protein 498 i... 59 7e-09
Alignment gi|XP_535446.1| PREDICTED: similar to zinc finger protein 31 [C... 58 2e-08
Alignment gi|XP_547160.2| PREDICTED: similar to Zinc finger protein 263 (... 57 5e-08
Alignment gi|XP_545440.2| PREDICTED: similar to Zinc finger protein Kr18 ... 55 1e-07
Alignment gi|XP_536869.2| PREDICTED: similar to zinc finger protein 99 [C... 55 2e-07
Alignment gi|XP_537285.1| PREDICTED: similar to Zinc finger protein 24 (Z... 54 2e-07
Alignment gi|XP_546967.2| PREDICTED: similar to zinc finger protein 36 is... 54 4e-07
>ref|XP_865437.1| PREDICTED: similar to SCAN domain-containing protein 1 isoform 3
[Canis familiaris].
Length = 179
Score = 138 bits (348), Expect = 1e-32
Identities = 89/179 (49%), Positives = 92/179 (51%)
Frame = +2
Query: 440 MAATELSLAATGSLALPLGKEEGAGPSSGPERDSADSFSTXXXXXXXXXXXXXXXXVAEE 619
MAATE SLAA G LALP KEEGAG SG ER+SA S ST E
Sbjct: 1 MAATEPSLAAAGGLALPPEKEEGAGLGSGSERNSAGSSSTVKAAPPAPESSSANAAATEA 60
Query: 620 NPTPHSAASASLELPLGPXXXXXXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXXXDAA 799
TP +AASA LELP+GP ET DAA
Sbjct: 61 IRTPPAAASAPLELPVGPPALSSPPLAEAAPRSPPHSGGSRPGPETFRQRFRQFRYQDAA 120
Query: 800 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRITG 976
GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ TDVRITG
Sbjct: 121 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 179
>ref|XP_852290.1| PREDICTED: similar to SCAN domain-containing protein 1 isoform 2
[Canis familiaris].
Length = 179
Score = 138 bits (348), Expect = 1e-32
Identities = 89/179 (49%), Positives = 92/179 (51%)
Frame = +2
Query: 440 MAATELSLAATGSLALPLGKEEGAGPSSGPERDSADSFSTXXXXXXXXXXXXXXXXVAEE 619
MAATE SLAA G LALP KEEGAG SG ER+SA S ST E
Sbjct: 1 MAATEPSLAAAGGLALPPEKEEGAGLGSGSERNSAGSSSTVKAAPPAPESSSANAAATEA 60
Query: 620 NPTPHSAASASLELPLGPXXXXXXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXXXDAA 799
TP +AASA LELP+GP ET DAA
Sbjct: 61 IRTPPAAASAPLELPVGPPALSSPPLAEAAPRSPPHSGGSRPGPETFRQRFRQFRYQDAA 120
Query: 800 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRITG 976
GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ TDVRITG
Sbjct: 121 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 179
>ref|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (Zinc finger and SCAN
domain containing protein 15) [Canis familiaris].
Length = 491
Score = 60.1 bits (144), Expect = 4e-09
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
D+AGPREA QLREL QWLRP++ TKEQI+E+LV EQ
Sbjct: 58 DSAGPREALSQLRELCHQWLRPEVNTKEQILELLVLEQ 95
>ref|XP_546971.2| PREDICTED: similar to zinc finger protein 498 isoform 1 [Canis
familiaris].
Length = 546
Score = 59.3 bits (142), Expect = 7e-09
Identities = 26/38 (68%), Positives = 34/38 (89%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGP+EA R+L+EL RQWLRP++ TKEQI+E+LV EQ
Sbjct: 52 EAAGPQEALRELQELCRQWLRPELHTKEQILELLVLEQ 89
>ref|XP_535446.1| PREDICTED: similar to zinc finger protein 31 [Canis familiaris].
Length = 852
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ AGPREAF QL EL +WLRP++RTKEQIVE+LV EQ
Sbjct: 27 EVAGPREAFSQLWELCCRWLRPEVRTKEQIVELLVLEQ 64
>ref|XP_547160.2| PREDICTED: similar to Zinc finger protein 263 (Zinc finger protein
FPM315) [Canis familiaris].
Length = 684
Score = 56.6 bits (135), Expect = 5e-08
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPREA +L+EL +WLRP++RTKEQI+E+LV EQ
Sbjct: 51 EAAGPREALSRLQELCHEWLRPEMRTKEQILELLVLEQ 88
>ref|XP_545440.2| PREDICTED: similar to Zinc finger protein Kr18 (HKr18) [Canis
familiaris].
Length = 772
Score = 55.5 bits (132), Expect = 1e-07
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
DA GPREA QL EL RQWLRP+ TKEQI+++LV EQ
Sbjct: 51 DAPGPREALSQLWELCRQWLRPEYHTKEQILDLLVLEQ 88
>ref|XP_536869.2| PREDICTED: similar to zinc finger protein 99 [Canis familiaris].
Length = 531
Score = 54.7 bits (130), Expect = 2e-07
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGP EA +LREL R+WLRP++ +KEQI+E+LV EQ
Sbjct: 49 EAAGPEEALSRLRELCRRWLRPELHSKEQILELLVLEQ 86
>ref|XP_537285.1| PREDICTED: similar to Zinc finger protein 24 (Zinc finger protein
191) (Zinc finger protein KOX17) (Retinoic acid
suppression protein A) (RSG-A) (Zinc finger and SCAN
domain containing protein 3) [Canis familiaris].
Length = 368
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
D+ GPREA QLREL R WLRP+ TKEQI+E++V EQ
Sbjct: 62 DSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQ 99
>ref|XP_546967.2| PREDICTED: similar to zinc finger protein 36 isoform 1 [Canis
familiaris].
Length = 563
Score = 53.5 bits (127), Expect = 4e-07
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 800 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
GPREA +L+EL QWLRP+I TKEQI+E+LV EQ
Sbjct: 69 GPREALSRLKELCHQWLRPEINTKEQILELLVLEQ 103
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,324,020
Number of extensions: 819707
Number of successful extensions: 4459
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 4446
Number of HSP's successfully gapped: 55
Length of query: 418
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 313
Effective length of database: 15,374,224
Effective search space: 4812132112
Effective search space used: 4812132112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008096
(1255 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134467.1| PREDICTED: SCAN domain-containing protein 1-... 187 1e-47
Alignment gi|NP_001230507.1| SCAN domain-containing 1-like [Sus scrofa]. 68 9e-12
Alignment gi|XP_003353427.1| PREDICTED: zinc finger and SCAN domain-conta... 57 3e-08
Alignment gi|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-... 56 4e-08
Alignment gi|XP_003124709.2| PREDICTED: zinc finger protein 213 [Sus scro... 56 5e-08
Alignment gi|XP_003130018.1| PREDICTED: zinc finger protein 202 [Sus scro... 55 1e-07
Alignment gi|XP_003357384.1| PREDICTED: zinc finger protein 202-like [Sus... 55 1e-07
Alignment gi|XP_003356634.1| PREDICTED: zinc finger protein 323 [Sus scro... 55 1e-07
Alignment gi|XP_001928888.3| PREDICTED: LOW QUALITY PROTEIN: zinc finger ... 55 1e-07
Alignment gi|XP_003132075.2| PREDICTED: zinc finger protein 287-like [Sus... 54 1e-07
>ref|XP_003134467.1| PREDICTED: SCAN domain-containing protein 1-like [Sus scrofa].
Length = 179
Score = 187 bits (474), Expect = 1e-47
Identities = 109/179 (60%), Positives = 109/179 (60%)
Frame = +2
Query: 440 MAATELSLAATGSLALPLGKEEGAGPSSGPERDSADSFSTXXXXXXXXXXXXXXXXVAEE 619
MAATELSLAATGSLALPLGKEEGAGPSSGPERDSADSFST VAEE
Sbjct: 1 MAATELSLAATGSLALPLGKEEGAGPSSGPERDSADSFSTPEAPPPAPKPSSPKAEVAEE 60
Query: 620 NPTPHSAASASLELPLGPXXXXXXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXXXDAA 799
NPTPHSAASASLELPLGP ET DAA
Sbjct: 61 NPTPHSAASASLELPLGPAALGSASFAEAAPRSPPGPGGSRPGPETFRQRFRQFRYQDAA 120
Query: 800 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRITG 976
GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ TDVRITG
Sbjct: 121 GPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 179
>ref|NP_001230507.1| SCAN domain-containing 1-like [Sus scrofa].
Length = 142
Score = 68.2 bits (165), Expect = 9e-12
Identities = 36/62 (58%), Positives = 39/62 (62%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRI 970
DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQ VRI
Sbjct: 81 DAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRI 140
Query: 971 TG 976
TG
Sbjct: 141 TG 142
>ref|XP_003353427.1| PREDICTED: zinc finger and SCAN domain-containing protein 29 [Sus
scrofa].
Length = 848
Score = 56.6 bits (135), Expect = 3e-08
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ AGPREAF QL +L +WLRP++RTKEQIVE+LV EQ
Sbjct: 28 EVAGPREAFSQLWQLCCRWLRPEVRTKEQIVELLVLEQ 65
>ref|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-like [Sus scrofa].
Length = 1323
Score = 56.2 bits (134), Expect = 4e-08
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ GPREA QLREL RQWL P+I TKEQI+E+LV EQ
Sbjct: 62 ETPGPREALSQLRELCRQWLSPEIHTKEQILELLVLEQ 99
>ref|XP_003124709.2| PREDICTED: zinc finger protein 213 [Sus scrofa].
Length = 456
Score = 55.8 bits (133), Expect = 5e-08
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
DA GP EAF QL EL +WLRP++RTKEQI+E+LV EQ
Sbjct: 55 DAGGPHEAFSQLWELCCRWLRPELRTKEQILELLVLEQ 92
>ref|XP_003130018.1| PREDICTED: zinc finger protein 202 [Sus scrofa].
Length = 644
Score = 54.7 bits (130), Expect = 1e-07
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AA PREA +LREL QWLRP+ RTKEQI+E+LV EQ
Sbjct: 56 EAASPREALIRLRELCHQWLRPERRTKEQILELLVLEQ 93
>ref|XP_003357384.1| PREDICTED: zinc finger protein 202-like [Sus scrofa].
Length = 644
Score = 54.7 bits (130), Expect = 1e-07
Identities = 26/38 (68%), Positives = 31/38 (81%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AA PREA +LREL QWLRP+ RTKEQI+E+LV EQ
Sbjct: 56 EAASPREALIRLRELCHQWLRPERRTKEQILELLVLEQ 93
>ref|XP_003356634.1| PREDICTED: zinc finger protein 323 [Sus scrofa].
Length = 438
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/38 (65%), Positives = 29/38 (76%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ GPREA +LREL QWLRPD TKEQI+E+LV EQ
Sbjct: 49 ETPGPREALSRLRELCHQWLRPDTHTKEQILELLVLEQ 86
>ref|XP_001928888.3| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 165 [Sus
scrofa].
Length = 859
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
D+AGPREA +LREL QWL+P+ TKEQI+E+LV EQ
Sbjct: 59 DSAGPREALSRLRELCCQWLKPETHTKEQILELLVLEQ 96
>ref|XP_003132075.2| PREDICTED: zinc finger protein 287-like [Sus scrofa].
Length = 760
Score = 54.3 bits (129), Expect = 1e-07
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
D AGPR+A QLREL +WLRP+I +KEQI+E+L+ EQ
Sbjct: 59 DLAGPRKALNQLRELCLKWLRPEIHSKEQILELLILEQ 96
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,495,870
Number of extensions: 798626
Number of successful extensions: 2708
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 2703
Number of HSP's successfully gapped: 38
Length of query: 418
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 316
Effective length of database: 8,804,438
Effective search space: 2782202408
Effective search space used: 2782202408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008096
(1255 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064651.2| paroxisome proliferative activated receptor, ga... 84 2e-16
Alignment gi|NP_001034204.1| zinc finger protein with KRAB and SCAN domai... 58 1e-08
Alignment gi|NP_001139250.1| zinc finger protein with KRAB and SCAN domai... 58 1e-08
Alignment gi|NP_076174.3| zinc finger protein with KRAB and SCAN domains ... 58 1e-08
Alignment gi|NP_001074900.1| zinc finger protein 498 [Mus musculus]. 58 2e-08
Alignment gi|NP_849220.3| zinc finger and SCAN domain-containing protein ... 58 2e-08
Alignment gi|NP_057893.2| zinc finger and SCAN domain-containing protein ... 57 3e-08
Alignment gi|NP_683726.2| zinc finger protein 263 [Mus musculus]. 57 4e-08
Alignment gi|NP_665818.2| myeloid zinc finger 1 [Mus musculus]. 56 7e-08
Alignment gi|NP_067534.2| zinc finger protein 24 [Mus musculus]. 54 2e-07
>ref|NP_064651.2| paroxisome proliferative activated receptor, gamma, coactivator 1
[Mus musculus].
Length = 142
Score = 84.0 bits (206), Expect = 2e-16
Identities = 54/118 (45%), Positives = 57/118 (48%)
Frame = +2
Query: 623 PTPHSAASASLELPLGPXXXXXXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXXXDAAG 802
P+P S +S + ELP P ET DAAG
Sbjct: 29 PSPDSGSSPAPELPGAPAALNTAPYADAALRPGASRPGP----ETFRQRFRQFRYQDAAG 84
Query: 803 PREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRITG 976
PREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ DVRITG
Sbjct: 85 PREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLQAILPEAARARRLRRRADVRITG 142
>ref|NP_001034204.1| zinc finger protein with KRAB and SCAN domains 4 [Mus musculus].
Length = 480
Score = 58.2 bits (139), Expect = 1e-08
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPR+A +LREL RQWLRPD+ +KEQI+E+LV EQ
Sbjct: 61 EAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQ 98
>ref|NP_001139250.1| zinc finger protein with KRAB and SCAN domains 3 [Mus musculus].
Length = 553
Score = 58.2 bits (139), Expect = 1e-08
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPR+A +LREL RQWLRPD+ +KEQI+E+LV EQ
Sbjct: 61 EAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQ 98
>ref|NP_076174.3| zinc finger protein with KRAB and SCAN domains 3 [Mus musculus].
Length = 553
Score = 58.2 bits (139), Expect = 1e-08
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPR+A +LREL RQWLRPD+ +KEQI+E+LV EQ
Sbjct: 61 EAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQ 98
>ref|NP_001074900.1| zinc finger protein 498 [Mus musculus].
Length = 543
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/38 (65%), Positives = 34/38 (89%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGP+EA R+L+EL R+WLRP++ TKEQI+E+LV EQ
Sbjct: 52 EAAGPQEALRELQELCRRWLRPELHTKEQILELLVLEQ 89
>ref|NP_849220.3| zinc finger and SCAN domain-containing protein 29 [Mus musculus].
Length = 869
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ AGPREAF QL EL +WLRP++RTKEQIVE+LV EQ
Sbjct: 27 EVAGPREAFSQLWELCCRWLRPEVRTKEQIVELLVLEQ 64
>ref|NP_057893.2| zinc finger and SCAN domain-containing protein 12 [Mus musculus].
Length = 501
Score = 57.0 bits (136), Expect = 3e-08
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ +GPREA +LREL RQWLRPD+ +KEQI+E+LV EQ
Sbjct: 56 ETSGPREALSRLRELCRQWLRPDLNSKEQILELLVLEQ 93
>ref|NP_683726.2| zinc finger protein 263 [Mus musculus].
Length = 680
Score = 56.6 bits (135), Expect = 4e-08
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
DA GPREA +L+EL R WLRP++RTKEQI+E+LV EQ
Sbjct: 53 DAPGPREALSRLQELCRGWLRPEMRTKEQILELLVLEQ 90
>ref|NP_665818.2| myeloid zinc finger 1 [Mus musculus].
Length = 735
Score = 55.8 bits (133), Expect = 7e-08
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
DA GP+EA QLREL QWLRP++ +KEQ++E+LV EQ
Sbjct: 55 DAIGPQEALAQLRELCHQWLRPEVHSKEQVLELLVLEQ 92
>ref|NP_067534.2| zinc finger protein 24 [Mus musculus].
Length = 368
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
D+ GPREA QLREL R WLRP+ TKEQI+E++V EQ
Sbjct: 62 DSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQ 99
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,538,043
Number of extensions: 629494
Number of successful extensions: 3087
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 3084
Number of HSP's successfully gapped: 38
Length of query: 418
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 314
Effective length of database: 12,493,815
Effective search space: 3923057910
Effective search space used: 3923057910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008096
(1255 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_361012.2| SCAN domain-containing protein 1 isoform 2 [Hom... 134 2e-31
Alignment gi|NP_057642.1| SCAN domain-containing protein 1 isoform 1 [Hom... 129 4e-30
Alignment gi|NP_932172.1| myeloid zinc finger 1 isoform 2 [Homo sapiens]. 58 2e-08
Alignment gi|NP_003413.2| myeloid zinc finger 1 isoform 1 [Homo sapiens]. 58 2e-08
Alignment gi|NP_660090.2| zinc finger protein 498 [Homo sapiens]. 58 2e-08
Alignment gi|NP_689668.3| zinc finger and SCAN domain-containing protein ... 58 2e-08
Alignment gi|NP_443155.1| SCAN domain-containing protein 3 [Homo sapiens]. 57 5e-08
Alignment gi|NP_001229823.1| zinc finger protein with KRAB and SCAN domai... 56 6e-08
Alignment gi|NP_077819.2| zinc finger protein with KRAB and SCAN domains ... 56 6e-08
Alignment gi|NP_079507.1| zinc finger and SCAN domain-containing protein ... 55 1e-07
>ref|NP_361012.2| SCAN domain-containing protein 1 isoform 2 [Homo sapiens].
Length = 242
Score = 134 bits (336), Expect = 2e-31
Identities = 90/183 (49%), Positives = 95/183 (51%), Gaps = 1/183 (0%)
Frame = +2
Query: 431 SGVMAATELSLAATGS-LALPLGKEEGAGPSSGPERDSADSFSTXXXXXXXXXXXXXXXX 607
+GVMAATE LAATGS A+P K EGAG SS PER+ S S
Sbjct: 61 AGVMAATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGS-SLPEASPPAPEPSSPNAA 119
Query: 608 VAEENPTPHSAASASLELPLGPXXXXXXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXX 787
V E PTP +AASA+LELPLGP ET
Sbjct: 120 VPEAIPTPRAAASAALELPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRY 179
Query: 788 XDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVR 967
DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ TDVR
Sbjct: 180 QDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVR 239
Query: 968 ITG 976
ITG
Sbjct: 240 ITG 242
>ref|NP_057642.1| SCAN domain-containing protein 1 isoform 1 [Homo sapiens].
Length = 179
Score = 129 bits (325), Expect = 4e-30
Identities = 88/180 (48%), Positives = 92/180 (51%), Gaps = 1/180 (0%)
Frame = +2
Query: 440 MAATELSLAATGS-LALPLGKEEGAGPSSGPERDSADSFSTXXXXXXXXXXXXXXXXVAE 616
MAATE LAATGS A+P K EGAG SS PER+ S S V E
Sbjct: 1 MAATEPILAATGSPAAVPPEKLEGAGSSSAPERNCVGS-SLPEASPPAPEPSSPNAAVPE 59
Query: 617 ENPTPHSAASASLELPLGPXXXXXXXXXXXXXXXXXXXXXXXXXXETXXXXXXXXXXXDA 796
PTP +AASA+LELPLGP ET DA
Sbjct: 60 AIPTPRAAASAALELPLGPAPVSVAPQAEAEARSTPGPAGSRLGPETFRQRFRQFRYQDA 119
Query: 797 AGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQXXXXXXXXXXXXXXXXXTDVRITG 976
AGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ TDVRITG
Sbjct: 120 AGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRITG 179
>ref|NP_932172.1| myeloid zinc finger 1 isoform 2 [Homo sapiens].
Length = 734
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+A GP+EA QLREL RQWLRP++R+KEQ++E+LV EQ
Sbjct: 54 EATGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQ 91
>ref|NP_003413.2| myeloid zinc finger 1 isoform 1 [Homo sapiens].
Length = 734
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+A GP+EA QLREL RQWLRP++R+KEQ++E+LV EQ
Sbjct: 54 EATGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQ 91
>ref|NP_660090.2| zinc finger protein 498 [Homo sapiens].
Length = 544
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/38 (65%), Positives = 34/38 (89%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGP+EA R+L+EL R+WLRP++ TKEQI+E+LV EQ
Sbjct: 52 EAAGPQEALRELQELCRRWLRPELHTKEQILELLVLEQ 89
>ref|NP_689668.3| zinc finger and SCAN domain-containing protein 29 [Homo sapiens].
Length = 852
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ AGPREAF QL EL +WLRP++RTKEQIVE+LV EQ
Sbjct: 28 EVAGPREAFSQLWELCCRWLRPEVRTKEQIVELLVLEQ 65
>ref|NP_443155.1| SCAN domain-containing protein 3 [Homo sapiens].
Length = 1325
Score = 56.6 bits (135), Expect = 5e-08
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+ GPREA QLREL RQWL P+I TKEQI+E+LV EQ
Sbjct: 62 ETPGPREALSQLRELCRQWLNPEIHTKEQILELLVLEQ 99
>ref|NP_001229823.1| zinc finger protein with KRAB and SCAN domains 3 isoform 1 [Homo
sapiens].
Length = 538
Score = 56.2 bits (134), Expect = 6e-08
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPREA +LREL RQWL+P++ +KEQI+E+LV EQ
Sbjct: 56 EAAGPREALSRLRELCRQWLQPEMHSKEQILELLVLEQ 93
>ref|NP_077819.2| zinc finger protein with KRAB and SCAN domains 3 isoform 1 [Homo
sapiens].
Length = 538
Score = 56.2 bits (134), Expect = 6e-08
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
+AAGPREA +LREL RQWL+P++ +KEQI+E+LV EQ
Sbjct: 56 EAAGPREALSRLRELCRQWLQPEMHSKEQILELLVLEQ 93
>ref|NP_079507.1| zinc finger and SCAN domain-containing protein 16 [Homo sapiens].
Length = 348
Score = 55.5 bits (132), Expect = 1e-07
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +2
Query: 791 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQ 904
DA GPREA QL EL RQWLRP+ TKEQI+++LV EQ
Sbjct: 51 DAPGPREALTQLWELCRQWLRPECHTKEQILDLLVLEQ 88
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,185,548
Number of extensions: 767278
Number of successful extensions: 3867
Number of sequences better than 1.0e-05: 65
Number of HSP's gapped: 3859
Number of HSP's successfully gapped: 65
Length of query: 418
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 313
Effective length of database: 14,835,944
Effective search space: 4643650472
Effective search space used: 4643650472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008096
(1255 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 2177 0.0
Sscrofa_Chr06 70 3e-09
Sscrofa_Chr14 64 2e-07
Sscrofa_Chr03 64 2e-07
>Sscrofa_Chr17
|| Length = 69701581
Score = 2177 bits (1098), Expect = 0.0
Identities = 1104/1106 (99%)
Strand = Plus / Minus
Query: 68 aactggtgctcggaggcgccaccatcccgaactgaccattgcacgcttagattagccggg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651915 aactggtgctcggaggcgccaccatcccgaactgaccattgcacgcttagattagccggg 44651856
Query: 128 tgccctgctgtggccgctgcctcctggcgggactcgcgaacgcgagagggcgccgcgtcc 187
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 44651855 tgccctgctgtggccgccgcctcctggcgggactcgcgaacgcgagggggcgccgcgtcc 44651796
Query: 188 tcgagcccagactcggcttccgggcgctcgcgcaccgaggtcatcatagagaagccagcg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651795 tcgagcccagactcggcttccgggcgctcgcgcaccgaggtcatcatagagaagccagcg 44651736
Query: 248 gggacgaccacttccggccgccccagccgcttcgccggcgctggtaagctcacggcgccc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651735 gggacgaccacttccggccgccccagccgcttcgccggcgctggtaagctcacggcgccc 44651676
Query: 308 cccgcccgcctccctcagggtctcgcggactccgccctctagcggaaacgtctccctcct 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651675 cccgcccgcctccctcagggtctcgcggactccgccctctagcggaaacgtctccctcct 44651616
Query: 368 tacccagcccccgcgcagacgtagtgccgcgccctcagctgcgggacaaagagtgacgtc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651615 tacccagcccccgcgcagacgtagtgccgcgccctcagctgcgggacaaagagtgacgtc 44651556
Query: 428 cgtagcggagttatggcggccaccgagctgagcttggcggctaccgggagtctcgcgctg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651555 cgtagcggagttatggcggccaccgagctgagcttggcggctaccgggagtctcgcgctg 44651496
Query: 488 ccgttggggaaagaagaaggggccggcccgagctcaggcccggagcgtgactctgcggac 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651495 ccgttggggaaagaagaaggggccggcccgagctcaggcccggagcgtgactctgcggac 44651436
Query: 548 tccttctcgactcctgaggccccaccgcctgcccccaagccctccagccccaaggccgag 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651435 tccttctcgactcctgaggccccaccgcctgcccccaagccctccagccccaaggccgag 44651376
Query: 608 gtcgccgaagagaatcctacgcctcactcggccgcctccgcctccctggagctgcccctc 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651375 gtcgccgaagagaatcctacgcctcactcggccgcctccgcctccctggagctgcccctc 44651316
Query: 668 gggcccgcagccctgggctccgcgtcgtttgccgaagcagctccgcgctcacccccaggc 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651315 gggcccgcagccctgggctccgcgtcgtttgccgaagcagctccgcgctcacccccaggc 44651256
Query: 728 cctggcggttcccggcccggcccagagacgttccgccagcgattccggcagttccgctac 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651255 cctggcggttcccggcccggcccagagacgttccgccagcgattccggcagttccgctac 44651196
Query: 788 caagacgcggcaggcccgcgggaagcgttccggcagctgcgggagctttcccgccagtgg 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651195 caagacgcggcaggcccgcgggaagcgttccggcagctgcgggagctttcccgccagtgg 44651136
Query: 848 ctgcggcccgacatccgcacgaaggagcagatcgtggagatgctggtgcaagagcagctg 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651135 ctgcggcccgacatccgcacgaaggagcagatcgtggagatgctggtgcaagagcagctg 44651076
Query: 908 ctcgccatcctgcccgaggcggcgcgggcccggcggcttcgccgccgcacagacgtacgc 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651075 ctcgccatcctgcccgaggcggcgcgggcccggcggcttcgccgccgcacagacgtacgc 44651016
Query: 968 attacaggctgagcagccgggctgccggcggcccggctctccattctgcgttaatgaaaa 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44651015 attacaggctgagcagccgggctgccggcggcccggctctccattctgcgttaatgaaaa 44650956
Query: 1028 acgagttttggctgttcctgcagtctcgagtgtccttttcggtcgtcctttgcaatgttt 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44650955 acgagttttggctgttcctgcagtctcgagtgtccttttcggtcgtcctttgcaatgttt 44650896
Query: 1088 atttccccgagcctatttccaacctttctgactggtggcgaaatcaagttgggagctcat 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44650895 atttccccgagcctatttccaacctttctgactggtggcgaaatcaagttgggagctcat 44650836
Query: 1148 gagaataaagcctttcttattcactt 1173
||||||||||||||||||||||||||
Sbjct: 44650835 gagaataaagcctttcttattcactt 44650810
>Sscrofa_Chr06
|| Length = 157765593
Score = 69.9 bits (35), Expect = 3e-09
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 829 ggagctttcccgccagtggctgcggcccgacatccgcacgaaggagcagatcgtggagat 888
||||||| || | ||||||||| |||||||||| | ||| ||||||||||| ||||| ||
Sbjct: 74039064 ggagcttgccggacagtggctgaggcccgacattcacacaaaggagcagattgtggaaat 74039123
Query: 889 gctggtgcaagagca 903
||||||||| |||||
Sbjct: 74039124 gctggtgcaggagca 74039138
>Sscrofa_Chr14
|| Length = 153851969
Score = 63.9 bits (32), Expect = 2e-07
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 843 agtggctgcggcccgacatccgcacgaaggagcagatcgtggagatgctggtgcaagagc 902
|||||||| ||||||| |||| ||| |||||||||||| ||||| ||||||||| ||||
Sbjct: 40084306 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 40084247
Query: 903 agctgctcgccatcctgccc 922
|| | || |||||||||||
Sbjct: 40084246 agttcctgaccatcctgccc 40084227
>Sscrofa_Chr03
|| Length = 144787322
Score = 63.9 bits (32), Expect = 2e-07
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 843 agtggctgcggcccgacatccgcacgaaggagcagatcgtggagatgctggtgcaagagc 902
|||||||| ||||||| |||| ||| |||||||||||| ||||| ||||||||| ||||
Sbjct: 7262735 agtggctgaggcccgagatccacaccaaggagcagatcctggagctgctggtgctggagc 7262794
Query: 903 agctgctcgccatcctgccc 922
|| | || |||||||||||
Sbjct: 7262795 agttcctgaccatcctgccc 7262814
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,876,299
Number of extensions: 199
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 4
Length of query: 1255
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1234
Effective length of database: 2,808,413,156
Effective search space: 3465581834504
Effective search space used: 3465581834504
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)