Animal-Genome cDNA 20110601C-008121


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008121
         (735 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776738.1| fatty acid-binding protein, heart [Bos taurus].      254   5e-68
Alignment   gi|XP_002688416.1| PREDICTED: fatty acid binding protein 3-like...   221   6e-58
Alignment   gi|NP_001071630.1| fatty acid-binding protein, brain [Bos tauru...   191   5e-49
Alignment   gi|NP_776739.1| fatty acid-binding protein, adipocyte [Bos taur...   172   3e-43
Alignment   gi|NP_001068707.1| myelin P2 protein [Bos taurus].                   162   3e-40
Alignment   gi|NP_001179339.1| fatty acid-binding protein 9 [Bos taurus].        158   4e-39
Alignment   gi|XP_002692760.1| PREDICTED: fatty acid-binding protein 9-like...   158   4e-39
Alignment   gi|NP_776740.1| fatty acid-binding protein, epidermal [Bos taur...   135   3e-32
Alignment   gi|XP_002692761.1| PREDICTED: fatty acid binding protein 12-lik...   135   5e-32
Alignment   gi|NP_001008670.1| cellular retinoic acid-binding protein 2 [Bo...   106   2e-23

>ref|NP_776738.1| fatty acid-binding protein, heart [Bos taurus].
          Length = 133

 Score =  254 bits (649), Expect = 5e-68
 Identities = 123/133 (92%), Positives = 131/133 (98%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MVDAF GTWKLVDSKNFDDYMKS+GVGFATRQV NMTKPTTIIEVNGDT+IIKTQSTFK+
Sbjct: 1   MVDAFVGTWKLVDSKNFDDYMKSLGVGFATRQVGNMTKPTTIIEVNGDTVIIKTQSTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVH+QKWNGQET+LVRE+VDGKLILTLTH
Sbjct: 61  TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHVQKWNGQETSLVREMVDGKLILTLTH 120

Query: 438 GSAVCTRTYEKEA 476
           G+AVCTRTYEK+A
Sbjct: 121 GTAVCTRTYEKQA 133


>ref|XP_002688416.1| PREDICTED: fatty acid binding protein 3-like [Bos taurus].
          Length = 153

 Score =  221 bits (562), Expect = 6e-58
 Identities = 108/146 (73%), Positives = 124/146 (84%)
 Frame = +3

Query: 39  CSVVSFSA*PSLTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNG 218
           CS  + +  PSLT VD F GTWKLVDS+NFDDYMKS+GVGFAT+Q AN+TKP T+IEVN 
Sbjct: 8   CSFETETVKPSLTTVDTFMGTWKLVDSRNFDDYMKSLGVGFATKQAANITKPITVIEVNV 67

Query: 219 DTIIIKTQSTFKSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVR 398
           DTI IKTQS F++ E+SF+LGV F+ETTADDRKVKSIV LDGGK VH+Q WNGQETTLVR
Sbjct: 68  DTITIKTQSVFQNREVSFELGVNFNETTADDRKVKSIVMLDGGKFVHVQNWNGQETTLVR 127

Query: 399 ELVDGKLILTLTHGSAVCTRTYEKEA 476
           E+VD KLIL LTH SAVC RTY++EA
Sbjct: 128 EIVDEKLILPLTHCSAVCNRTYKEEA 153


>ref|NP_001071630.1| fatty acid-binding protein, brain [Bos taurus].
          Length = 132

 Score =  191 bits (485), Expect = 5e-49
 Identities = 89/131 (67%), Positives = 108/131 (82%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MV+AF  TWKL +S+NFD+YMK++GVGFATRQV N+TKPT II   GD ++I+TQSTFK+
Sbjct: 1   MVEAFCATWKLTESQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDRVVIRTQSTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISF LG EFDETTADDR  KS+V+LDG KLVH+QKW+G+ET  VRE+ DGK+I+TLT 
Sbjct: 61  TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMIMTLTF 120

Query: 438 GSAVCTRTYEK 470
           G  V  R YEK
Sbjct: 121 GDVVAVRHYEK 131


>ref|NP_776739.1| fatty acid-binding protein, adipocyte [Bos taurus].
          Length = 132

 Score =  172 bits (436), Expect = 3e-43
 Identities = 82/131 (62%), Positives = 99/131 (75%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KPT II +NG  + IK++STFK+
Sbjct: 1   MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPTLIISLNGGVVTIKSESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EFDE T DDRKVKSIV LD G LV +Q W+G+ TT+ R+L+D K++L    
Sbjct: 61  TEISFKLGQEFDEITPDDRKVKSIVNLDEGALVQVQNWDGKSTTIKRKLMDDKMVLECVM 120

Query: 438 GSAVCTRTYEK 470
                TR YE+
Sbjct: 121 NGVTATRVYER 131


>ref|NP_001068707.1| myelin P2 protein [Bos taurus].
          Length = 132

 Score =  162 bits (410), Expect = 3e-40
 Identities = 78/131 (59%), Positives = 98/131 (74%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M + F GTWKLV S+NFD+YMK++GVG ATR++ N+ KP  II   GD I I+T+S FK+
Sbjct: 1   MSNKFLGTWKLVSSENFDEYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESPFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EF+ETTAD+RK KS VTL  G L  +QKW+G ETT+ R+LVDGK+++    
Sbjct: 61  TEISFKLGQEFEETTADNRKTKSTVTLARGSLNQVQKWDGNETTIKRKLVDGKMVVECKM 120

Query: 438 GSAVCTRTYEK 470
              VCTR YEK
Sbjct: 121 KDVVCTRIYEK 131


>ref|NP_001179339.1| fatty acid-binding protein 9 [Bos taurus].
          Length = 132

 Score =  158 bits (400), Expect = 4e-39
 Identities = 75/131 (57%), Positives = 97/131 (74%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MV+ F GTWKLV  +NFD+YMK +GV  A + +A   KP  II  +GD I IKTQS FK+
Sbjct: 1   MVEPFLGTWKLVSRENFDEYMKELGVSVAVQNLAGSAKPRIIISADGDKISIKTQSAFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           +EISFKLG EFDETT D+RKVKSI+TLDGG ++H+QKW G+ETT+ R++VDGK+++    
Sbjct: 61  SEISFKLGEEFDETTIDNRKVKSIITLDGGSMIHVQKWLGKETTIKRKIVDGKMLVEYIM 120

Query: 438 GSAVCTRTYEK 470
            + V T   EK
Sbjct: 121 NNVVSTGVCEK 131


>ref|XP_002692760.1| PREDICTED: fatty acid-binding protein 9-like [Bos taurus].
          Length = 132

 Score =  158 bits (400), Expect = 4e-39
 Identities = 75/131 (57%), Positives = 97/131 (74%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MV+ F GTWKLV  +NFD+YMK +GV  A + +A   KP  II  +GD I IKTQS FK+
Sbjct: 1   MVEPFLGTWKLVSRENFDEYMKELGVSVAVQNLAGSAKPRIIISADGDKISIKTQSAFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           +EISFKLG EFDETT D+RKVKSI+TLDGG ++H+QKW G+ETT+ R++VDGK+++    
Sbjct: 61  SEISFKLGEEFDETTIDNRKVKSIITLDGGSMIHVQKWLGKETTIKRKIVDGKMLVEYIM 120

Query: 438 GSAVCTRTYEK 470
            + V T   EK
Sbjct: 121 NNVVSTGVCEK 131


>ref|NP_776740.1| fatty acid-binding protein, epidermal [Bos taurus].
          Length = 135

 Score =  135 bits (341), Expect = 3e-32
 Identities = 63/133 (47%), Positives = 88/133 (66%)
 Frame = +3

Query: 72  LTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTF 251
           +  V    G W+LV+SK FD+YMK +GVG A R+V  M KP  II  +G  + IKT+ST 
Sbjct: 1   MATVQQLVGRWRLVESKGFDEYMKEVGVGMALRKVGAMAKPDCIITSDGKNLSIKTESTL 60

Query: 252 KSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTL 431
           K+T+ S KLG +F+ETTAD RK +++     G LV  Q+W+G+E+T+ R+L DGKL++  
Sbjct: 61  KTTQFSCKLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLEDGKLVVVC 120

Query: 432 THGSAVCTRTYEK 470
              +  CTR YEK
Sbjct: 121 VMNNVTCTRVYEK 133


>ref|XP_002692761.1| PREDICTED: fatty acid binding protein 12-like isoform 1 [Bos
           taurus].
          Length = 140

 Score =  135 bits (339), Expect = 5e-32
 Identities = 64/131 (48%), Positives = 88/131 (67%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MVD F GTWK +  +NF++YMK +G+G A+R++  + KPT  I    D I IKT+S FK+
Sbjct: 1   MVDLFQGTWKSISCENFEEYMKELGIGRASRKLGCLAKPTVTIMTKEDLITIKTKSIFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
            +ISFKLG EF+ETT    K KS V LD   LV +Q W+G+E T+ R+LVD K+++    
Sbjct: 61  NDISFKLGEEFEETTPGGHKTKSTVILDDDSLVQVQDWDGKEITIRRKLVDEKMVVESVV 120

Query: 438 GSAVCTRTYEK 470
            +  CTRTYE+
Sbjct: 121 NNVTCTRTYER 131


>ref|NP_001008670.1| cellular retinoic acid-binding protein 2 [Bos taurus].
          Length = 138

 Score =  106 bits (265), Expect = 2e-23
 Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
 Frame = +3

Query: 90  FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
           F+G WK++ S+NF+D +K +GV    R+  VA  +KP   I+  GDT  IKT +T ++TE
Sbjct: 4   FSGNWKIIRSENFEDLLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTE 63

Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWNGQETTLVRELV-DGKLILT 428
           I+FK+G EF+E T D R  KS+V  +   K+V    L K  G +T+  REL  DG+LILT
Sbjct: 64  INFKIGEEFEEQTVDGRPCKSLVKWESENKMVCEQRLLKGEGPKTSWTRELTNDGELILT 123

Query: 429 LTHGSAVCTRTYEKE 473
           +T    VCTR Y +E
Sbjct: 124 MTADDIVCTRVYVRE 138


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,124,680
Number of extensions: 759207
Number of successful extensions: 2106
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 2066
Number of HSP's successfully gapped: 21
Length of query: 245
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 146
Effective length of database: 14,405,662
Effective search space: 2103226652
Effective search space used: 2103226652
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008121
         (735 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535331.1| PREDICTED: similar to Fatty acid-binding protei...   256   1e-68
Alignment   gi|XP_533484.2| PREDICTED: similar to Fatty acid-binding protei...   190   1e-48
Alignment   gi|XP_865066.1| PREDICTED: similar to Fatty acid-binding protei...   187   8e-48
Alignment   gi|XP_543759.2| PREDICTED: similar to Fatty acid-binding protei...   177   7e-45
Alignment   gi|XP_850162.1| PREDICTED: similar to Fatty acid-binding protei...   177   9e-45
Alignment   gi|XP_548843.2| PREDICTED: similar to Fatty acid-binding protei...   173   2e-43
Alignment   gi|XP_544144.2| PREDICTED: similar to Myelin P2 protein [Canis ...   167   9e-42
Alignment   gi|XP_860850.1| PREDICTED: similar to Fatty acid-binding protei...   164   1e-40
Alignment   gi|XP_544145.2| PREDICTED: similar to fatty acid binding protei...   158   6e-39
Alignment   gi|XP_544146.2| PREDICTED: similar to Myelin P2 protein [Canis ...   139   3e-33

>ref|XP_535331.1| PREDICTED: similar to Fatty acid-binding protein, heart (H-FABP)
           (Heart-type fatty acid-binding protein) (Muscle fatty
           acid-binding protein) (M-FABP) (Mammary-derived growth
           inhibitor) (MDGI) isoform 1 [Canis familiaris].
          Length = 133

 Score =  256 bits (654), Expect = 1e-68
 Identities = 126/133 (94%), Positives = 130/133 (97%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MVDAF GTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTT+IE+NGDTIIIKT STFK+
Sbjct: 1   MVDAFVGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTVIEMNGDTIIIKTHSTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLGVEFDETTADDRKVKS VTLDGGKLVH+QKWNGQETTLVRELVDGKLILTLTH
Sbjct: 61  TEISFKLGVEFDETTADDRKVKSTVTLDGGKLVHVQKWNGQETTLVRELVDGKLILTLTH 120

Query: 438 GSAVCTRTYEKEA 476
           GSAVCTRTYEKEA
Sbjct: 121 GSAVCTRTYEKEA 133


>ref|XP_533484.2| PREDICTED: similar to Fatty acid-binding protein, brain (B-FABP)
           (Brain lipid-binding protein) (BLBP) (Mammary derived
           growth inhibitor related) [Canis familiaris].
          Length = 132

 Score =  190 bits (482), Expect = 1e-48
 Identities = 88/131 (67%), Positives = 107/131 (81%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MV+AF  TWKL DS+NFD+YMK++GVGFATRQV N+TKPT II   GD ++I+TQ TFK+
Sbjct: 1   MVEAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIIGQEGDKVVIRTQCTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISF LG EFDETTADDR  KS+V+LDG KLVH+QKW+G+ET  VRE+ DGK+++TLT 
Sbjct: 61  TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMVMTLTF 120

Query: 438 GSAVCTRTYEK 470
           G  V  R YEK
Sbjct: 121 GDVVAVRQYEK 131


>ref|XP_865066.1| PREDICTED: similar to Fatty acid-binding protein, heart (H-FABP)
           (Heart-type fatty acid-binding protein) (Muscle fatty
           acid-binding protein) (M-FABP) (Mammary-derived growth
           inhibitor) (MDGI) isoform 2 [Canis familiaris].
          Length = 98

 Score =  187 bits (475), Expect = 8e-48
 Identities = 92/98 (93%), Positives = 96/98 (97%)
 Frame = +3

Query: 183 MTKPTTIIEVNGDTIIIKTQSTFKSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHL 362
           MTKPTT+IE+NGDTIIIKT STFK+TEISFKLGVEFDETTADDRKVKS VTLDGGKLVH+
Sbjct: 1   MTKPTTVIEMNGDTIIIKTHSTFKNTEISFKLGVEFDETTADDRKVKSTVTLDGGKLVHV 60

Query: 363 QKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA 476
           QKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA
Sbjct: 61  QKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA 98


>ref|XP_543759.2| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
           (Adipocyte lipid-binding protein) (ALBP) (A-FABP) [Canis
           familiaris].
          Length = 132

 Score =  177 bits (450), Expect = 7e-45
 Identities = 86/131 (65%), Positives = 102/131 (77%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKL  S+NFDDYMK +GVGFATR+VA M KP+ II VNGD I IK++STFK+
Sbjct: 1   MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPSMIISVNGDVITIKSESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EFDE TADDRKVKSI+TLDGG LV +QKW+G+ TT+ R+ VD KL++    
Sbjct: 61  TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVRVQKWDGKSTTIKRKQVDDKLVVECIM 120

Query: 438 GSAVCTRTYEK 470
                TR YE+
Sbjct: 121 KGVTSTRIYER 131


>ref|XP_850162.1| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
           (Adipocyte lipid-binding protein) (ALBP) (A-FABP)
           isoform 1 [Canis familiaris].
          Length = 132

 Score =  177 bits (449), Expect = 9e-45
 Identities = 86/131 (65%), Positives = 101/131 (77%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKL  S+NFDDYMK +GVGFATR+VA M KP  II VNGD I IK++STFK+
Sbjct: 1   MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EFDE TADDRKVKSI+TLDGG LV +QKW+G+ TT+ R+ VD KL++    
Sbjct: 61  TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVQVQKWDGKSTTIKRKRVDDKLVVECIM 120

Query: 438 GSAVCTRTYEK 470
                TR YE+
Sbjct: 121 KGVTSTRIYER 131


>ref|XP_548843.2| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
           (Adipocyte lipid-binding protein) (ALBP) (A-FABP) [Canis
           familiaris].
          Length = 183

 Score =  173 bits (438), Expect = 2e-43
 Identities = 84/131 (64%), Positives = 99/131 (75%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKL  S+NFDDYMK +GVGFATR+VA M KP  II VNGD I IK++STFK+
Sbjct: 52  MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNRIISVNGDVITIKSESTFKN 111

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EFDE TAD R VKSI+TLDGG LV +QKW+G+ TT+ R+ VD KL++    
Sbjct: 112 TEISFKLGQEFDEVTADYRNVKSIITLDGGVLVQVQKWDGESTTIKRKQVDDKLVVECIR 171

Query: 438 GSAVCTRTYEK 470
                TR YE+
Sbjct: 172 KGVTSTRIYER 182


>ref|XP_544144.2| PREDICTED: similar to Myelin P2 protein [Canis familiaris].
          Length = 132

 Score =  167 bits (423), Expect = 9e-42
 Identities = 80/131 (61%), Positives = 101/131 (77%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M + F GTWKLV S++FDDYMK++GVG ATR++ N+ KP  II   GD I I+T+STFK+
Sbjct: 1   MSNRFLGTWKLVSSEHFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EF+ETTAD+RK KSIVTL  G L  +QKW+G+ETT+ R+LVDGK+++    
Sbjct: 61  TEISFKLGQEFEETTADNRKAKSIVTLSRGSLNQVQKWDGKETTIKRKLVDGKMVVECKM 120

Query: 438 GSAVCTRTYEK 470
              VCTR YEK
Sbjct: 121 KGVVCTRIYEK 131


>ref|XP_860850.1| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
           (Adipocyte lipid-binding protein) (ALBP) (A-FABP) (P2
           adipocyte protein) (Myelin P2 protein homolog) (3T3-L1
           lipid binding protein) (422 protein) (P15) isoform 2
           [Canis familiaris].
          Length = 111

 Score =  164 bits (414), Expect = 1e-40
 Identities = 78/108 (72%), Positives = 90/108 (83%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKL  S+NFDDYMK +GVGFATR+VA M KP  II VNGD I IK++STFK+
Sbjct: 1   MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRE 401
           TEISFKLG EFDE TADDRKVKSI+TLDGG LV +QKW+G+ TT+ R+
Sbjct: 61  TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVQVQKWDGKSTTIKRK 108


>ref|XP_544145.2| PREDICTED: similar to fatty acid binding protein 9, testis [Canis
           familiaris].
          Length = 132

 Score =  158 bits (399), Expect = 6e-39
 Identities = 71/131 (54%), Positives = 99/131 (75%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M++ F GTWKLV S+NF++Y+K +G+  A R +A + KP   I  NGD + IKT+S+FK+
Sbjct: 1   MIEPFLGTWKLVSSENFEEYLKQLGMNAAARNLAGLAKPRISISANGDEVNIKTESSFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EF+E TAD+RKVKSI+TL  G ++H+QKW G+ETT+ R++VDGK+++  + 
Sbjct: 61  TEISFKLGEEFEEITADNRKVKSIITLTSGSMIHVQKWLGKETTIKRQIVDGKMVVEYSM 120

Query: 438 GSAVCTRTYEK 470
              V TR YEK
Sbjct: 121 NKTVSTRIYEK 131


>ref|XP_544146.2| PREDICTED: similar to Myelin P2 protein [Canis familiaris].
          Length = 140

 Score =  139 bits (350), Expect = 3e-33
 Identities = 64/131 (48%), Positives = 90/131 (68%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MVD   G WK +  +NF++YMK +G+G A+R++A + KPT  I    D I IKT+S FK+
Sbjct: 1   MVDQLQGKWKSISCENFEEYMKELGIGRASRKLACLAKPTVTISTQEDWITIKTKSIFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
            +ISFKLG EF+ETT    K KS+VTLD   L+ +Q W+G+E T+ R+LVDGK+++    
Sbjct: 61  NKISFKLGEEFEETTPGGHKTKSVVTLDNDSLIQVQDWDGKENTIRRKLVDGKMVVESAV 120

Query: 438 GSAVCTRTYEK 470
            +  CTRTYE+
Sbjct: 121 NNVTCTRTYER 131


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,099,858
Number of extensions: 754075
Number of successful extensions: 2198
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2163
Number of HSP's successfully gapped: 20
Length of query: 245
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 145
Effective length of database: 15,540,904
Effective search space: 2253431080
Effective search space used: 2253431080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008121
         (735 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001093401.1| fatty acid-binding protein, heart [Sus scrof...   265   1e-71
Alignment   gi|XP_003127755.1| PREDICTED: fatty acid-binding protein, heart...   254   4e-68
Alignment   gi|XP_003359943.1| PREDICTED: fatty acid-binding protein, heart...   239   1e-63
Alignment   gi|NP_001020400.1| fatty acid-binding protein, brain [Sus scrof...   192   2e-49
Alignment   gi|NP_001002817.1| fatty acid-binding protein, adipocyte [Sus s...   176   1e-44
Alignment   gi|NP_001171994.1| myelin P2 protein [Sus scrofa].                   168   3e-42
Alignment   gi|NP_001034835.1| fatty acid-binding protein, epidermal [Sus s...   130   7e-31
Alignment   gi|NP_001157981.1| cellular retinoic acid-binding protein 2 [Su...   106   1e-23
Alignment   gi|XP_003127812.2| PREDICTED: fatty acid-binding protein, heart...   105   3e-23
Alignment   gi|NP_001121964.1| cellular retinoic acid binding protein 1 [Su...   101   4e-22

>ref|NP_001093401.1| fatty acid-binding protein, heart [Sus scrofa].
          Length = 133

 Score =  265 bits (678), Expect = 1e-71
 Identities = 133/133 (100%), Positives = 133/133 (100%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS
Sbjct: 1   MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH
Sbjct: 61  TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 120

Query: 438 GSAVCTRTYEKEA 476
           GSAVCTRTYEKEA
Sbjct: 121 GSAVCTRTYEKEA 133


>ref|XP_003127755.1| PREDICTED: fatty acid-binding protein, heart-like [Sus scrofa].
          Length = 211

 Score =  254 bits (648), Expect = 4e-68
 Identities = 127/137 (92%), Positives = 130/137 (94%)
 Frame = +3

Query: 66  PSLTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQS 245
           PSLT+VDAFAGTWKLVDSKNF DYMKSIGVGFATRQVANMTKPTTIIEVNGDT+ IKTQS
Sbjct: 75  PSLTVVDAFAGTWKLVDSKNFHDYMKSIGVGFATRQVANMTKPTTIIEVNGDTVTIKTQS 134

Query: 246 TFKSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLIL 425
           TFKSTEISFKLGV FDETTADDRKVKSIVT DG KLVH+QKWNGQETTLVRELVDGKLIL
Sbjct: 135 TFKSTEISFKLGVAFDETTADDRKVKSIVTPDGSKLVHVQKWNGQETTLVRELVDGKLIL 194

Query: 426 TLTHGSAVCTRTYEKEA 476
           TLTHGS VC RTYEKEA
Sbjct: 195 TLTHGSEVCIRTYEKEA 211


>ref|XP_003359943.1| PREDICTED: fatty acid-binding protein, heart-like [Sus scrofa].
          Length = 133

 Score =  239 bits (609), Expect = 1e-63
 Identities = 119/133 (89%), Positives = 123/133 (92%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M D F G WKLVDSKNFDD MKSIGVGFATRQVANMTKPTT+IEVNGDTI IKTQSTFKS
Sbjct: 1   MADTFMGIWKLVDSKNFDDCMKSIGVGFATRQVANMTKPTTVIEVNGDTITIKTQSTFKS 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
            EISFKLG++FDETTADDRKVKSIVTLDG KLVH+QKWNGQETTLVRELVDGKLILTLTH
Sbjct: 61  AEISFKLGLKFDETTADDRKVKSIVTLDGSKLVHVQKWNGQETTLVRELVDGKLILTLTH 120

Query: 438 GSAVCTRTYEKEA 476
           GSAVCT  YEKEA
Sbjct: 121 GSAVCTCIYEKEA 133


>ref|NP_001020400.1| fatty acid-binding protein, brain [Sus scrofa].
          Length = 132

 Score =  192 bits (488), Expect = 2e-49
 Identities = 89/131 (67%), Positives = 108/131 (82%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MV+AF  TWKL DS+NFD+YMK++GVGFATRQV N+TKPT II   GD ++I+TQSTFK+
Sbjct: 1   MVEAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTQSTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISF LG EFDETTADDR  KS+V+LDG KLVH+QKW+G+ET  VRE+ DGK+++TLT 
Sbjct: 61  TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMVMTLTF 120

Query: 438 GSAVCTRTYEK 470
           G  V  R YEK
Sbjct: 121 GDVVAVRHYEK 131


>ref|NP_001002817.1| fatty acid-binding protein, adipocyte [Sus scrofa].
          Length = 132

 Score =  176 bits (446), Expect = 1e-44
 Identities = 84/131 (64%), Positives = 102/131 (77%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KP  II VNGD I I+++STFK+
Sbjct: 1   MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEI+FKLG EFDE TADDRKVKS +TLDGG LV +QKW+G+ TT+ R++VD KL++    
Sbjct: 61  TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 120

Query: 438 GSAVCTRTYEK 470
                TR YE+
Sbjct: 121 KGVTATRIYER 131


>ref|NP_001171994.1| myelin P2 protein [Sus scrofa].
          Length = 132

 Score =  168 bits (425), Expect = 3e-42
 Identities = 80/131 (61%), Positives = 101/131 (77%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M + F GTWKLV S+NFDDYMK++GVG ATR++ N+ KP  II   GD I I+T+STFK+
Sbjct: 1   MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EF+ETTAD+RK KS+VTL  G L  +QKW+G+ETT+ R+LVDGK+++    
Sbjct: 61  TEISFKLGQEFEETTADNRKAKSVVTLARGSLNQVQKWDGKETTIKRKLVDGKMVVECKM 120

Query: 438 GSAVCTRTYEK 470
              VCTR YEK
Sbjct: 121 KDVVCTRIYEK 131


>ref|NP_001034835.1| fatty acid-binding protein, epidermal [Sus scrofa].
          Length = 135

 Score =  130 bits (327), Expect = 7e-31
 Identities = 58/133 (43%), Positives = 88/133 (66%)
 Frame = +3

Query: 72  LTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTF 251
           +  +    G W+LV+SK FD+YMK +GVG A R++  M KP  II  +G  + IKT+ST 
Sbjct: 1   MASIQQLVGRWRLVESKGFDEYMKEVGVGMALRKMGAMAKPDCIITFDGKDLTIKTESTL 60

Query: 252 KSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTL 431
           K+T+ S  LG +F+ETTAD RK +++     G+LV  Q+W+G+E+T+ R++ +GKL++  
Sbjct: 61  KTTQFSCNLGQKFEETTADGRKTQTVCDFTNGELVQHQEWDGKESTITRKVENGKLVVVC 120

Query: 432 THGSAVCTRTYEK 470
              +  CTR YEK
Sbjct: 121 VMNNVTCTRVYEK 133


>ref|NP_001157981.1| cellular retinoic acid-binding protein 2 [Sus scrofa].
          Length = 138

 Score =  106 bits (265), Expect = 1e-23
 Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
 Frame = +3

Query: 90  FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
           F+G WK++ S+NF+D +K +GV    R+  VA  +KP   I+ +GDT  IKT +T ++TE
Sbjct: 4   FSGNWKIIRSENFEDLLKVLGVNVMLRKIAVAAASKPAVEIKQDGDTFYIKTSTTVRTTE 63

Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWNGQETTLVRELV-DGKLILT 428
           I+FK+G EF+E T D R  KS+V  +   K+V    L K  G +T+  REL  DG+LILT
Sbjct: 64  INFKIGEEFEEQTVDGRPCKSLVKWESEDKMVCEQRLLKGEGPKTSWTRELTNDGELILT 123

Query: 429 LTHGSAVCTRTYEKE 473
           +T    VCTR Y +E
Sbjct: 124 MTADDIVCTRVYVRE 138


>ref|XP_003127812.2| PREDICTED: fatty acid-binding protein, heart-like [Sus scrofa].
          Length = 53

 Score =  105 bits (262), Expect = 3e-23
 Identities = 51/51 (100%), Positives = 51/51 (100%)
 Frame = +3

Query: 324 SIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA 476
           SIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA
Sbjct: 3   SIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA 53


>ref|NP_001121964.1| cellular retinoic acid binding protein 1 [Sus scrofa].
          Length = 137

 Score =  101 bits (252), Expect = 4e-22
 Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
 Frame = +3

Query: 90  FAGTWKLVDSKNFDDYMKSIGVGFATRQVA--NMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
           FAGTWK+  S+NFD+ +K++GV    R+VA    +KP   I  +GD   IKT +T ++TE
Sbjct: 4   FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63

Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDGGKLVH----LQKWNGQETTLVRELVDGKLILTL 431
           I+FK+G  F+E T D RK +S+ T +    +H    L + +G +T   REL + +LILT 
Sbjct: 64  INFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123

Query: 432 THGSAVCTRTYEKE 473
                VCTR Y +E
Sbjct: 124 GADDVVCTRIYVRE 137


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,319,795
Number of extensions: 523379
Number of successful extensions: 1356
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 1328
Number of HSP's successfully gapped: 23
Length of query: 245
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,953,820
Effective search space: 1334119180
Effective search space used: 1334119180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008121
         (735 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034304.1| fatty acid-binding protein, heart [Mus musculus].    240   9e-64
Alignment   gi|NP_067247.1| fatty acid-binding protein, brain [Mus musculus].    180   9e-46
Alignment   gi|NP_077717.1| fatty acid-binding protein, adipocyte [Mus musc...   175   3e-44
Alignment   gi|NP_001025476.1| myelin P2 protein [Mus musculus].                 162   2e-40
Alignment   gi|NP_035728.2| fatty acid-binding protein 9 [Mus musculus].         142   3e-34
Alignment   gi|NP_083586.1| fatty acid-binding protein 12 [Mus musculus].        142   3e-34
Alignment   gi|NP_034764.1| fatty acid-binding protein, epidermal [Mus musc...   132   3e-31
Alignment   gi|NP_031785.1| cellular retinoic acid-binding protein 2 [Mus m...   106   2e-23
Alignment   gi|NP_038524.1| cellular retinoic acid-binding protein 1 [Mus m...   100   9e-22
Alignment   gi|NP_033060.3| retinol-binding protein 2 [Mus musculus].             96   3e-20

>ref|NP_034304.1| fatty acid-binding protein, heart [Mus musculus].
          Length = 133

 Score =  240 bits (612), Expect = 9e-64
 Identities = 116/133 (87%), Positives = 125/133 (93%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKLVDSKNFDDYMKS+GVGFATRQVA+MTKPTTIIE NGDTI IKTQSTFK+
Sbjct: 1   MADAFVGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDTITIKTQSTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEI+F+LG+EFDE TADDRKVKS+VTLDGGKL+H+QKWNGQETTL RELVDGKLILTLTH
Sbjct: 61  TEINFQLGIEFDEVTADDRKVKSLVTLDGGKLIHVQKWNGQETTLTRELVDGKLILTLTH 120

Query: 438 GSAVCTRTYEKEA 476
           GS V TRTYEKEA
Sbjct: 121 GSVVSTRTYEKEA 133


>ref|NP_067247.1| fatty acid-binding protein, brain [Mus musculus].
          Length = 132

 Score =  180 bits (457), Expect = 9e-46
 Identities = 82/131 (62%), Positives = 104/131 (79%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MVDAF  TWKL DS+NFD+YMK++GVGFATRQV N+TKPT II   G  ++I+TQ TFK+
Sbjct: 1   MVDAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGGKVVIRTQCTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEI+F+LG EF+ET+ DDR  KS+V LDG KL+H+QKW+G+ET   RE+ DGK+++TLT 
Sbjct: 61  TEINFQLGEEFEETSIDDRNCKSVVRLDGDKLIHVQKWDGKETNCTREIKDGKMVVTLTF 120

Query: 438 GSAVCTRTYEK 470
           G  V  R YEK
Sbjct: 121 GDIVAVRCYEK 131


>ref|NP_077717.1| fatty acid-binding protein, adipocyte [Mus musculus].
          Length = 132

 Score =  175 bits (444), Expect = 3e-44
 Identities = 84/131 (64%), Positives = 101/131 (77%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KP  II VNGD + I+++STFK+
Sbjct: 1   MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDLVTIRSESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLGVEFDE TADDRKVKSI+TLDGG LV +QKW+G+ TT+ R+    KL++    
Sbjct: 61  TEISFKLGVEFDEITADDRKVKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVM 120

Query: 438 GSAVCTRTYEK 470
                TR YE+
Sbjct: 121 KGVTSTRVYER 131


>ref|NP_001025476.1| myelin P2 protein [Mus musculus].
          Length = 132

 Score =  162 bits (411), Expect = 2e-40
 Identities = 77/131 (58%), Positives = 99/131 (75%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M + F GTWKLV S++FDDYMK++GVG A R++ N+ KPT II   GD I I+T+S FK+
Sbjct: 1   MSNKFLGTWKLVSSEHFDDYMKALGVGLANRKLGNLAKPTVIISKKGDYITIRTESAFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EFDETTAD+RK KSIVTL+ G L  +QKW+G+ET + R L+DG++++    
Sbjct: 61  TEISFKLGQEFDETTADNRKAKSIVTLERGSLKQVQKWDGKETAIRRTLLDGRMVVECIM 120

Query: 438 GSAVCTRTYEK 470
              VCTR YEK
Sbjct: 121 KGVVCTRIYEK 131


>ref|NP_035728.2| fatty acid-binding protein 9 [Mus musculus].
          Length = 132

 Score =  142 bits (358), Expect = 3e-34
 Identities = 63/131 (48%), Positives = 98/131 (74%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M++ F GTWKL+ S+NF++Y++ +GV    R+VA + KP+  I  NG+ + I+  S  ++
Sbjct: 1   MIEPFLGTWKLISSENFENYVRELGVECEPRKVACLIKPSVSISFNGERMDIQAGSACRN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EF+ETTAD+RKVKS++T +GG ++ +QKW G++TT+ R++VDGK+++  T 
Sbjct: 61  TEISFKLGEEFEETTADNRKVKSLITFEGGSMIQVQKWLGKQTTIKRKIVDGKMVVECTM 120

Query: 438 GSAVCTRTYEK 470
            + V TR YE+
Sbjct: 121 NNVVSTRIYER 131


>ref|NP_083586.1| fatty acid-binding protein 12 [Mus musculus].
          Length = 132

 Score =  142 bits (357), Expect = 3e-34
 Identities = 68/131 (51%), Positives = 89/131 (67%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MVD   GTWK V   NF++YMK +GVG A+R++  + KPT  I  +GD I IKT+S FK+
Sbjct: 1   MVDQLQGTWKSVSCDNFENYMKELGVGRASRKLGCLAKPTVTISTDGDLITIKTKSIFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
            EISFKLG EF+ETT   RK KS V LD   LV +Q W+G+E T+ R LVDGK+++    
Sbjct: 61  KEISFKLGEEFEETTPSGRKSKSTVILDNDSLVQVQDWDGKEATICRRLVDGKMVVESAV 120

Query: 438 GSAVCTRTYEK 470
            +  CTRTY++
Sbjct: 121 NNVTCTRTYQR 131


>ref|NP_034764.1| fatty acid-binding protein, epidermal [Mus musculus].
          Length = 135

 Score =  132 bits (331), Expect = 3e-31
 Identities = 61/125 (48%), Positives = 87/125 (69%)
 Frame = +3

Query: 96  GTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKSTEISFK 275
           G W+L++S  F++YMK +GVG A R++A M KP  II  +G+ I +KT+ST K+T  S  
Sbjct: 9   GKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCN 68

Query: 276 LGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAVCT 455
           LG +FDETTAD RK +++ T   G LV  Q+W+G+E+T+ R+L DGK+I+     +A CT
Sbjct: 69  LGEKFDETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCT 128

Query: 456 RTYEK 470
           R YEK
Sbjct: 129 RVYEK 133


>ref|NP_031785.1| cellular retinoic acid-binding protein 2 [Mus musculus].
          Length = 138

 Score =  106 bits (264), Expect = 2e-23
 Identities = 60/135 (44%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
 Frame = +3

Query: 90  FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
           F+G WK++ S+NF++ +K++GV    R+  VA  +KP   I+   DT  IKT +T ++TE
Sbjct: 4   FSGNWKIIRSENFEEMLKALGVNMMMRKIAVAAASKPAVEIKQENDTFYIKTSTTVRTTE 63

Query: 264 ISFKLGVEFDETTADDRKVKSIVTLD-GGKLV---HLQKWNGQETTLVRELV-DGKLILT 428
           I+FK+G EF+E T D R  KS+V  + G K+V    L K  G +T+  REL  DG+LILT
Sbjct: 64  INFKIGEEFEEQTVDGRPCKSLVKWESGNKMVCEQRLLKGEGPKTSWSRELTNDGELILT 123

Query: 429 LTHGSAVCTRTYEKE 473
           +T    VCTR Y +E
Sbjct: 124 MTADDVVCTRVYVRE 138


>ref|NP_038524.1| cellular retinoic acid-binding protein 1 [Mus musculus].
          Length = 137

 Score =  100 bits (250), Expect = 9e-22
 Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
 Frame = +3

Query: 90  FAGTWKLVDSKNFDDYMKSIGVGFATRQVA--NMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
           FAGTWK+  S+NFD+ +K++GV    R+VA    +KP   I  +GD   IKT +T ++TE
Sbjct: 4   FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63

Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDGGKLVH----LQKWNGQETTLVRELVDGKLILTL 431
           I+FK+G  F+E T D RK +S+ T +    +H    L + +G +T   REL + +LILT 
Sbjct: 64  INFKVGEGFEEETVDGRKCRSLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123

Query: 432 THGSAVCTRTYEKE 473
                VCTR Y +E
Sbjct: 124 GADDVVCTRIYVRE 137


>ref|NP_033060.3| retinol-binding protein 2 [Mus musculus].
          Length = 134

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
 Frame = +3

Query: 96  GTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKSTEISFK 275
           GTW++  ++NF+ YMK++ + FATR++A     T II  +GD    KT STF++ ++ F 
Sbjct: 7   GTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKIITQDGDNFKTKTNSTFRNYDLDFT 66

Query: 276 LGVEFDETT--ADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAV 449
           +GVEFDE T   D R VK++VT +G  LV +QK   +     + +   KL L LT G  V
Sbjct: 67  VGVEFDEHTKGLDGRHVKTLVTWEGNTLVCVQKGEKENRGWKQWVEGDKLYLELTCGDQV 126

Query: 450 CTRTYEKE 473
           C + ++K+
Sbjct: 127 CRQVFKKK 134


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,520,568
Number of extensions: 639731
Number of successful extensions: 1990
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1928
Number of HSP's successfully gapped: 14
Length of query: 245
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 146
Effective length of database: 12,643,995
Effective search space: 1846023270
Effective search space used: 1846023270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008121
         (735 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004093.1| fatty acid-binding protein, heart [Homo sapiens].    246   1e-65
Alignment   gi|NP_001437.1| fatty acid-binding protein, brain [Homo sapiens].    189   3e-48
Alignment   gi|NP_001433.1| fatty acid-binding protein, adipocyte [Homo sap...   176   2e-44
Alignment   gi|NP_002668.1| myelin P2 protein [Homo sapiens].                    167   7e-42
Alignment   gi|NP_001073995.1| fatty acid-binding protein 9 [Homo sapiens].      159   2e-39
Alignment   gi|NP_001098751.1| fatty acid-binding protein 12 [Homo sapiens].     147   7e-36
Alignment   gi|NP_001435.1| fatty acid-binding protein, epidermal [Homo sap...   133   2e-31
Alignment   gi|NP_001186652.1| cellular retinoic acid-binding protein 2 [Ho...   104   7e-23
Alignment   gi|NP_001869.1| cellular retinoic acid-binding protein 2 [Homo ...   104   7e-23
Alignment   gi|NP_004369.1| cellular retinoic acid-binding protein 1 [Homo ...   101   6e-22

>ref|NP_004093.1| fatty acid-binding protein, heart [Homo sapiens].
          Length = 133

 Score =  246 bits (628), Expect = 1e-65
 Identities = 120/133 (90%), Positives = 128/133 (96%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MVDAF GTWKLVDSKNFDDYMKS+GVGFATRQVA+MTKPTTIIE NGD + +KT STFK+
Sbjct: 1   MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKW+GQETTLVREL+DGKLILTLTH
Sbjct: 61  TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH 120

Query: 438 GSAVCTRTYEKEA 476
           G+AVCTRTYEKEA
Sbjct: 121 GTAVCTRTYEKEA 133


>ref|NP_001437.1| fatty acid-binding protein, brain [Homo sapiens].
          Length = 132

 Score =  189 bits (479), Expect = 3e-48
 Identities = 87/131 (66%), Positives = 108/131 (82%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MV+AF  TWKL +S+NFD+YMK++GVGFATRQV N+TKPT II   GD ++I+T STFK+
Sbjct: 1   MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISF+LG EFDETTADDR  KS+V+LDG KLVH+QKW+G+ET  VRE+ DGK+++TLT 
Sbjct: 61  TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 120

Query: 438 GSAVCTRTYEK 470
           G  V  R YEK
Sbjct: 121 GDVVAVRHYEK 131


>ref|NP_001433.1| fatty acid-binding protein, adipocyte [Homo sapiens].
          Length = 132

 Score =  176 bits (446), Expect = 2e-44
 Identities = 85/131 (64%), Positives = 100/131 (76%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KP  II VNGD I IK++STFK+
Sbjct: 1   MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISF LG EFDE TADDRKVKS +TLDGG LVH+QKW+G+ TT+ R+  D KL++    
Sbjct: 61  TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM 120

Query: 438 GSAVCTRTYEK 470
                TR YE+
Sbjct: 121 KGVTSTRVYER 131


>ref|NP_002668.1| myelin P2 protein [Homo sapiens].
          Length = 132

 Score =  167 bits (424), Expect = 7e-42
 Identities = 80/131 (61%), Positives = 101/131 (77%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M + F GTWKLV S+NFDDYMK++GVG ATR++ N+ KPT II   GD I I+T+STFK+
Sbjct: 1   MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           TEISFKLG EF+ETTAD+RK KSIVTL  G L  +Q+W+G+ETT+ R+LV+GK++     
Sbjct: 61  TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM 120

Query: 438 GSAVCTRTYEK 470
              VCTR YEK
Sbjct: 121 KGVVCTRIYEK 131


>ref|NP_001073995.1| fatty acid-binding protein 9 [Homo sapiens].
          Length = 132

 Score =  159 bits (403), Expect = 2e-39
 Identities = 73/131 (55%), Positives = 100/131 (76%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           MV+ F GTWKLV S+NF+DYMK +GV FA R +A + KPT  I V+G  + I+T+S+F+ 
Sbjct: 1   MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
           T+ISFKLG EFDETTAD+RKVKS +TL+ G ++H+QKW G+ETT+ R++VD K+++    
Sbjct: 61  TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM 120

Query: 438 GSAVCTRTYEK 470
            + V TR YEK
Sbjct: 121 NNIVSTRIYEK 131


>ref|NP_001098751.1| fatty acid-binding protein 12 [Homo sapiens].
          Length = 140

 Score =  147 bits (372), Expect = 7e-36
 Identities = 68/131 (51%), Positives = 92/131 (70%)
 Frame = +3

Query: 78  MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
           M+D   GTWK +  +N +DYMK +G+G A+R++  + KPT  I  +GD I IKT+S FK+
Sbjct: 1   MIDQLQGTWKSISCENSEDYMKELGIGRASRKLGRLAKPTVTISTDGDVITIKTKSIFKN 60

Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
            EISFKLG EF+E T    K KS VTLD   L+ +Q W+G+ETT+ R+LVDGK+++  T 
Sbjct: 61  NEISFKLGEEFEEITPGGHKTKSKVTLDKESLIQVQDWDGKETTITRKLVDGKMVVESTV 120

Query: 438 GSAVCTRTYEK 470
            S +CTRTYEK
Sbjct: 121 NSVICTRTYEK 131


>ref|NP_001435.1| fatty acid-binding protein, epidermal [Homo sapiens].
          Length = 135

 Score =  133 bits (334), Expect = 2e-31
 Identities = 62/133 (46%), Positives = 87/133 (65%)
 Frame = +3

Query: 72  LTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTF 251
           +  V    G W+LVDSK FD+YMK +GVG A R++  M KP  II  +G  + IKT+ST 
Sbjct: 1   MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL 60

Query: 252 KSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTL 431
           K+T+ S  LG +F+ETTAD RK +++     G LV  Q+W+G+E+T+ R+L DGKL++  
Sbjct: 61  KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC 120

Query: 432 THGSAVCTRTYEK 470
              +  CTR YEK
Sbjct: 121 VMNNVTCTRIYEK 133


>ref|NP_001186652.1| cellular retinoic acid-binding protein 2 [Homo sapiens].
          Length = 138

 Score =  104 bits (260), Expect = 7e-23
 Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
 Frame = +3

Query: 90  FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
           F+G WK++ S+NF++ +K +GV    R+  VA  +KP   I+  GDT  IKT +T ++TE
Sbjct: 4   FSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTE 63

Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWNGQETTLVRELV-DGKLILT 428
           I+FK+G EF+E T D R  KS+V  +   K+V    L K  G +T+  REL  DG+LILT
Sbjct: 64  INFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILT 123

Query: 429 LTHGSAVCTRTYEKE 473
           +T    VCTR Y +E
Sbjct: 124 MTADDVVCTRVYVRE 138


>ref|NP_001869.1| cellular retinoic acid-binding protein 2 [Homo sapiens].
          Length = 138

 Score =  104 bits (260), Expect = 7e-23
 Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
 Frame = +3

Query: 90  FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
           F+G WK++ S+NF++ +K +GV    R+  VA  +KP   I+  GDT  IKT +T ++TE
Sbjct: 4   FSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTE 63

Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWNGQETTLVRELV-DGKLILT 428
           I+FK+G EF+E T D R  KS+V  +   K+V    L K  G +T+  REL  DG+LILT
Sbjct: 64  INFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILT 123

Query: 429 LTHGSAVCTRTYEKE 473
           +T    VCTR Y +E
Sbjct: 124 MTADDVVCTRVYVRE 138


>ref|NP_004369.1| cellular retinoic acid-binding protein 1 [Homo sapiens].
          Length = 137

 Score =  101 bits (252), Expect = 6e-22
 Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
 Frame = +3

Query: 90  FAGTWKLVDSKNFDDYMKSIGVGFATRQVA--NMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
           FAGTWK+  S+NFD+ +K++GV    R+VA    +KP   I  +GD   IKT +T ++TE
Sbjct: 4   FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63

Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDGGKLVH----LQKWNGQETTLVRELVDGKLILTL 431
           I+FK+G  F+E T D RK +S+ T +    +H    L + +G +T   REL + +LILT 
Sbjct: 64  INFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123

Query: 432 THGSAVCTRTYEKE 473
                VCTR Y +E
Sbjct: 124 GADDVVCTRIYVRE 137


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,715,417
Number of extensions: 746189
Number of successful extensions: 2154
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2110
Number of HSP's successfully gapped: 17
Length of query: 245
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 145
Effective length of database: 15,000,764
Effective search space: 2175110780
Effective search space used: 2175110780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008121
         (735 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         983   0.0  
Sscrofa_Chr17                                                         940   0.0  
Sscrofa_Chr13                                                         829   0.0  
Sscrofa_Chr10                                                         757   0.0  
Sscrofa_Chr04                                                         454   e-125
gb|GL896536.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   222   2e-55
Sscrofa_Chr05                                                          90   2e-15
Sscrofa_Chr02                                                          70   2e-09

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  983 bits (496), Expect = 0.0
 Identities = 634/681 (93%), Gaps = 4/681 (0%)
 Strand = Plus / Minus

                                                                            
Query: 24       gaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcaccatggtg 83
                |||| ||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 75997386 gaatgtttgcacgcctgctctgtcatctctttctcagcctagcccagcctcaccgtggtg 75997327

                                                                            
Query: 84       gacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgactacatgaag 143
                || |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 75997326 gatgccttcgcaggcacctggaagctagtggacagcaagaatttccatgactacatgaaa 75997267

                                                                            
Query: 144      tcaattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctaccacaatc 203
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75997266 tcaattggtgtgggtttcgccaccaggcaggtggccaacatgaccaagcctaccacaatc 75997207

                                                                            
Query: 204      atcgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagagcacagag 263
                ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 75997206 atcgaagtgaatggggacacagtcaccataaaaacacaaagcaccttcaagagcacagag 75997147

                                                                            
Query: 264      atcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaaggtcaag 323
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 75997146 atcagcttcaagctgggagtggcgtttgatgagacaacagcagatgacaggaaggtcaag 75997087

                                                                            
Query: 324      tccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaagag 383
                ||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 75997086 tccatagtgacaccggatggaagcaaacttgtccacgtgcagaagtggaatggacaagag 75997027

                                                                            
Query: 384      acaacgcttgttcgggaactagttgatgggaaactcatcctgacactcacccatggcagt 443
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 75997026 acaacgcttgttcgggaactagttgatgggaaacttatcctgacactcacccacggcagt 75996967

                                                                            
Query: 444      gcagtttgcactcgcacttacgagaaagaggcatgacctgcccatcccttcg---actgt 500
                | ||| |||| ||||||||| ||||||||||||||||||||||||||||||    |||  
Sbjct: 75996966 gaagtgtgcattcgcacttatgagaaagaggcatgacctgcccatcccttcatcaactac 75996907

                                                                            
Query: 501      tcctgccaattggctactcctggactcagcaccagattgcctcattttttcctctggcat 560
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75996906 tcctgccgattggctactcctggactcagcaccagattgcctcattttttcctctggcat 75996847

                                                                            
Query: 561      tttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcctgcgttca 620
                |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct: 75996846 tttgtaaaaatccactttggagatattctcctggggtcagattgcaccagcctgcgttta 75996787

                                                                            
Query: 621      gttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtgctctgag 680
                |||||||||||| |||||||||||||         | || |||||||||||||||| |||
Sbjct: 75996786 gttccggttctttttgtgtatgtttgttttttttaactt-catccaaagggtgctccgag 75996728

                                     
Query: 681      gtcaataaaatagccaaggcc 701
                |||||||||||||||||||||
Sbjct: 75996727 gtcaataaaatagccaaggcc 75996707



 Score =  496 bits (250), Expect = e-138
 Identities = 268/277 (96%)
 Strand = Plus / Minus

                                                                            
Query: 425      gacactcacccatggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgc 484
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81632950 gacactcacccatggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgc 81632891

                                                                            
Query: 485      ccatcccttcgactgttcctgccaattggctactcctggactcagcaccagattgcctca 544
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81632890 ccatcccttcgactgttcctgccaattggctactcctggactcagcaccagattgcctca 81632831

                                                                            
Query: 545      ttttttcctctggcattttgtaaaaatctactttggggatattctcctggggtcaggttg 604
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81632830 ttttttcctctggcattttgtaaaaatctactttggggatattctcctggggtcaggttg 81632771

                                                                            
Query: 605      caccagcctgcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatc 664
                ||||||||||||||||||||||||||||||||||||||||||         |||||||||
Sbjct: 81632770 caccagcctgcgttcagttccggttcttgttgtgtatgtttgtttttttttaattgcatc 81632711

                                                     
Query: 665      caaagggtgctctgaggtcaataaaatagccaaggcc 701
                |||||||||||||||||||||||||||||||||||||
Sbjct: 81632710 caaagggtgctctgaggtcaataaaatagccaaggcc 81632674



 Score =  496 bits (250), Expect = e-138
 Identities = 268/277 (96%)
 Strand = Plus / Plus

                                                                            
Query: 425      gacactcacccatggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgc 484
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81715589 gacactcacccatggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgc 81715648

                                                                            
Query: 485      ccatcccttcgactgttcctgccaattggctactcctggactcagcaccagattgcctca 544
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81715649 ccatcccttcgactgttcctgccaattggctactcctggactcagcaccagattgcctca 81715708

                                                                            
Query: 545      ttttttcctctggcattttgtaaaaatctactttggggatattctcctggggtcaggttg 604
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81715709 ttttttcctctggcattttgtaaaaatctactttggggatattctcctggggtcaggttg 81715768

                                                                            
Query: 605      caccagcctgcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatc 664
                ||||||||||||||||||||||||||||||||||||||||||         |||||||||
Sbjct: 81715769 caccagcctgcgttcagttccggttcttgttgtgtatgtttgtttttttttaattgcatc 81715828

                                                     
Query: 665      caaagggtgctctgaggtcaataaaatagccaaggcc 701
                |||||||||||||||||||||||||||||||||||||
Sbjct: 81715829 caaagggtgctctgaggtcaataaaatagccaaggcc 81715865



 Score =  278 bits (140), Expect = 4e-72
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                            
Query: 14       gccggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcct 73
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81655657 gccggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcct 81655598

                                                                            
Query: 74       caccatggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatga 133
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81655597 caccatggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatga 81655538

                                    
Query: 134      ctacatgaagtcaattggtg 153
                ||||||||||||||||||||
Sbjct: 81655537 ctacatgaagtcaattggtg 81655518



 Score =  206 bits (104), Expect = 1e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                            
Query: 322      agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 381
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81634401 agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 81634342

                                                            
Query: 382      agacaacgcttgttcgggaactagttgatgggaaactcatcctg 425
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81634341 agacaacgcttgttcgggaactagttgatgggaaactcatcctg 81634298



 Score =  206 bits (104), Expect = 1e-50
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                            
Query: 322      agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 381
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81714138 agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 81714197

                                                            
Query: 382      agacaacgcttgttcgggaactagttgatgggaaactcatcctg 425
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81714198 agacaacgcttgttcgggaactagttgatgggaaactcatcctg 81714241


>Sscrofa_Chr17 
||          Length = 69701581

 Score =  940 bits (474), Expect = 0.0
 Identities = 629/680 (92%), Gaps = 5/680 (0%)
 Strand = Plus / Plus

                                                                            
Query: 26       atttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcaccatggtgga 85
                |||||||| | |||| | |||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 17683072 atttttgcactcctgctatgtcatctctttctcagcctagcccagcctcaccatggcgga 17683131

                                                                            
Query: 86       cgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgactacatgaagtc 145
                | |||||  ||||| ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 17683132 caccttcatgggcatctggaagctagtggacagcaagaattttgatgactgcatgaagtc 17683191

                                                                            
Query: 146      aattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctaccacaatcat 205
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 17683192 aattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctaccacagtcat 17683251

                                                                            
Query: 206      cgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagagcacagagat 265
                ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 17683252 cgaagtgaatggggacacaatcaccataaaaacacaaagcaccttcaagagcgcagagat 17683311

                                                                            
Query: 266      cagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaaggtcaagtc 325
                |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 17683312 cagcttcaagctgggattgaagtttgatgagacaacagcagatgataggaaggtcaagtc 17683371

                                                                            
Query: 326      cattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaagagac 385
                ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 17683372 cattgtgacactggatggaagcaaacttgtccacgtgcagaagtggaatggacaagagac 17683431

                                                                            
Query: 386      aacgcttgttcgggaactagttgatgggaaactcatcctgacactcacccatggcagtgc 445
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17683432 aacgcttgttcgggaactagttgatgggaaactcatcctgacactcacccacggcagtgc 17683491

                                                                            
Query: 446      agtttgcactcgcacttacgagaaagaggcatgacctgcccatcccttc---gactgttc 502
                |||||||||| ||| ||| ||||||||||||||||||||||||||||||   ||||| ||
Sbjct: 17683492 agtttgcacttgcatttatgagaaagaggcatgacctgcccatcccttcattgactgctc 17683551

                                                                            
Query: 503      ctgccaattggctactcctggactcagcaccagattgcctc-attttttcctctggcatt 561
                || ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||
Sbjct: 17683552 cttccaattggctactcctggactcagcaccagattgcctcgtttttttcctgtggcatt 17683611

                                                                            
Query: 562      ttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcctgcgttcag 621
                ||||||||||| |||||||||||||||||||||||||| || |||||||||||| |  ||
Sbjct: 17683612 ttgtaaaaatccactttggggatattctcctggggtcacgtggcaccagcctgcatatag 17683671

                                                                            
Query: 622      ttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtgctctgagg 681
                |||||||||||||||||||||||||         || |||||||||||| ||| ||||||
Sbjct: 17683672 ttccggttcttgttgtgtatgtttg-ttttttttaactgcatccaaaggatgcgctgagg 17683730

                                    
Query: 682      tcaataaaatagccaaggcc 701
                ||||||||| ||||||||||
Sbjct: 17683731 tcaataaaacagccaaggcc 17683750


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  829 bits (418), Expect = 0.0
 Identities = 621/688 (90%), Gaps = 5/688 (0%)
 Strand = Plus / Minus

                                                                            
Query: 17       ggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcac 76
                ||||| |||||||||||  ||||||||| || ||||||||||||| |||||||||| |||
Sbjct: 36997301 ggtcccggaatttttgcatgcctgttctatcatctctttctcagcatagcccagccccac 36997242

                                                                            
Query: 77       catggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgacta 136
                |||||  |||||||||  |||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 36997241 catggcagacgccttcatgggcacctggaagctactagacagcaagaatttccatgacta 36997182

                                                                            
Query: 137      catgaagtcaattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctac 196
                |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 36997181 catgaagtcaattgttgtgggttttgccaccaggcaggtgaccaacatgaccaagcctac 36997122

                                                                            
Query: 197      cacaatcatcgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagag 256
                |||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 36997121 cacaattatcaaagtgaatggggacacaattaccataaaaacacaaagcaccttcaagag 36997062

                                                                            
Query: 257      cacagagatcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaa 316
                |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 36997061 cacagagatcagct-caagcatggagtggagtttgatgagacaacagcagatgacaggaa 36997003

                                                                            
Query: 317      ggtcaagtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatgg 376
                ||||||||| ||||||||| ||||||||||||||| ||||||  ||||||||||||||||
Sbjct: 36997002 ggtcaagtctattgtgacaatggatggaggcaaacatgtccatgtgcagaagtggaatgg 36996943

                                                                            
Query: 377      acaagagacaacgcttgttcgggaactagttgatgggaaactcatcctgacactcaccca 436
                  || ||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 36996942 gtaaaagacaacacttgtttgggaactagctgatgggaaactcatcctgacattcaccca 36996883

                                                                            
Query: 437      tggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgcccatcccttcga 496
                  |||||||||||||||||||||||||||||||||  |||||||||||||||||||||  
Sbjct: 36996882 aagcagtgcagtttgcactcgcacttacgagaaaggagcatgacctgcccatcccttctt 36996823

                                                                            
Query: 497      c---tgttcctgccaattggctactcctggactcagcaccagattgcctcattttttcct 553
                |   || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 36996822 cagctgctcctgccaactggctactcctggactcagcaccagattgcctcatttcttcct 36996763

                                                                            
Query: 554      ctggcattttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcct 613
                ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| | 
Sbjct: 36996762 ctggcattttgtaaaaatccactttggggatattctcctggagtcaggtggcaccagtcc 36996703

                                                                            
Query: 614      gcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtg 673
                || |  ||||| |||||||||||| ||||||||         || |||||||||||||||
Sbjct: 36996702 gcctatagttctggttcttgttgtatatgtttg-ttgtttttaactgcatccaaagggtg 36996644

                                            
Query: 674      ctctgaggtcaataaaatagccaaggcc 701
                ||||||||||||||||||||||||||||
Sbjct: 36996643 ctctgaggtcaataaaatagccaaggcc 36996616


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  757 bits (382), Expect = 0.0
 Identities = 613/689 (88%), Gaps = 18/689 (2%)
 Strand = Plus / Minus

                                                                            
Query: 19       tcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcacca 78
                ||||||||| ||||| |||||| ||||| | |||||||||||||||||||| ||||||||
Sbjct: 29949283 tcctggaatctttgcacgcctgctctgttgcctctttctcagcctagcccaacctcacca 29949224

                                                                            
Query: 79       tggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgactaca 138
                ||||||| |||||           |||||||| |||||||||| ||||| ||||||||||
Sbjct: 29949223 tggtggatgcctt-----------ggaagctaatggacagcaaaaattttgatgactaca 29949175

                                                                            
Query: 139      tgaagtcaattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctacca 198
                ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 29949174 tgaagtcaattggtgtgggttttgccaccaggcaggtggccaacacgaccaagccttcca 29949115

                                                                            
Query: 199      caatcatcgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagagca 258
                |||||||| ||||||| ||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct: 29949114 caatcatcaaagtgaacggggacacaatcaccatacaaacacaaaacaccttcaagagca 29949055

                                                                            
Query: 259      cagagatcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaagg 318
                |  |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 29949054 cccagatcagcttcaagctgggactggagtttgatgagaccacagcggatgacaggaagg 29948995

                                                                            
Query: 319      tcaagtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggac 378
                ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 29948994 tcaagtccattgtgacactggatggaggcaaacttgtccccgtgcagaagtggaatggac 29948935

                                                                            
Query: 379      aagagacaac-gcttgttcgggaactagttgatgggaaactca-tcctgacactcaccca 436
                ||||||||||  |||||| ||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 29948934 aagagacaacaccttgtttgggaactaggtgatgggacactcattcctgacactcaccca 29948875

                                                                            
Query: 437      tggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgcccatccct---t 493
                |||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||   |
Sbjct: 29948874 tggcggtgcagtttgcactggcacttatgagaaagaagcatgacctgcccatcccttcat 29948815

                                                                            
Query: 494      cgactgttcctgccaattggctactcctgg-actcagcaccagattgcctcattttttcc 552
                | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 29948814 caactgctcctgccaattggctactcctggaactcagcaccagattgcctcatttttacc 29948755

                                                                            
Query: 553      tctggcattttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcc 612
                ||| ||| |||||||||||| | | |||  |||||||||||||||||||| |||||||||
Sbjct: 29948754 tctagca-tttgtaaaaatccattctggccatattctcctggggtcaggtggcaccagcc 29948696

                                                                            
Query: 613      tgcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggt 672
                ||| |   ||||| ||||||| ||||||||||||         || ||||||||||||||
Sbjct: 29948695 tgcatatggttccagttcttggtgtgtatgtttggttttttttaactgcatccaaagggt 29948636

                                             
Query: 673      gctctgaggtcaataaaatagccaaggcc 701
                |||||||||||||||||||||||||||||
Sbjct: 29948635 gctctgaggtcaataaaatagccaaggcc 29948607


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  454 bits (229), Expect = e-125
 Identities = 334/367 (91%), Gaps = 4/367 (1%)
 Strand = Plus / Minus

                                                                            
Query: 24       gaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcaccatggtg 83
                |||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 89188005 gaatttttgcacgcctgctctgtcgtctctttctcagcctagtccagcctcaccatggcg 89187946

                                                                            
Query: 84       gacgccttcgcgggcacctggaagctagtg--gacagcaagaatttcgatgactacatga 141
                || ||||||  ||||||||||||||||||   | ||| ||||||||| ||||||||||||
Sbjct: 89187945 gatgccttcatgggcacctggaagctagtcctgccagtaagaatttcaatgactacatga 89187886

                                                                            
Query: 142      agtcaattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctaccacaa 201
                | || ||||||||||||||||||  ||   |  |||||||||||||||||||||||||||
Sbjct: 89187885 aatcgattggtgtgggttttgcccacaccaatttggccaacatgaccaagcctaccacaa 89187826

                                                                            
Query: 202      tcatcgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagagcacag 261
                ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |
Sbjct: 89187825 tcatcgaagtgaatggggacacaatcgccataaaaacacaaggcaccttcaagagca--g 89187768

                                                                            
Query: 262      agatcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaaggtca 321
                ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 89187767 agatcggcttcaagctgggagtggaatttgatgagacaacagcagatgacaggaaggtca 89187708

                                                                            
Query: 322      agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 381
                || ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct: 89187707 agcccattgtgacactggatggaggcaaacttgtccccgtgcaaaagtggaatggacaag 89187648

                       
Query: 382      agacaac 388
                |||||||
Sbjct: 89187647 agacaac 89187641



 Score =  341 bits (172), Expect = 3e-91
 Identities = 279/314 (88%), Gaps = 6/314 (1%)
 Strand = Plus / Minus

                                                                            
Query: 391      ttgttcgggaactagttgatgggaaactcatcctgacactcacccatggcagtgcagttt 450
                ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 89187610 ttgtttgggaactagttgatgggaaactcatcctgacactcacccacggcagtgcagttt 89187551

                                                                            
Query: 451      gcactcgcacttacgagaaagaggcatgacctgcccatcccttc---gactgttcctgcc 507
                | |||||| |||| ||||||||||||  ||||||||||||||||   ||||| |||||||
Sbjct: 89187550 gtactcgctcttatgagaaagaggcac-acctgcccatcccttcattgactgctcctgcc 89187492

                                                                            
Query: 508      aattggctactcctggactcagcaccagattgcctcattttttcctctggcattttgtaa 567
                ||||||||| ||||||||||||||||||| ||||||| || |||||||||| ||||||||
Sbjct: 89187491 aattggctaatcctggactcagcaccagactgcctcacttcttcctctggcgttttgtaa 89187432

                                                                            
Query: 568      aaatctactttggggatattctcctggggtcaggttgcaccagcctgcgttcagttccgg 627
                ||||| ||||||||||||||||||||||||||||| |||||||||| | |  ||||| ||
Sbjct: 89187431 aaatccactttggggatattctcctggggtcaggtggcaccagccttcatatagttctgg 89187372

                                                                            
Query: 628      ttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtgctctgaggtcaata 687
                ||||||||||||||| |||         || |||||||||||||||||||||||||||||
Sbjct: 89187371 ttcttgttgtgtatgcttg--tttttttaactgcatccaaagggtgctctgaggtcaata 89187314

                              
Query: 688      aaatagccaaggcc 701
                |||||| |||||||
Sbjct: 89187313 aaatagtcaaggcc 89187300


>gb|GL896536.1| Sus scrofa unplaced genomic scaffold chrU_scaffold867
          Length = 9183

 Score =  222 bits (112), Expect = 2e-55
 Identities = 184/208 (88%), Gaps = 2/208 (0%)
 Strand = Plus / Plus

                                                                        
Query: 495  gactgttcctgccaattggctactcctggactcagcaccagattgcctcatttttt-cct 553
            ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 3698 gactgctccttccaattggctactcctggactcagcaccagattgcctcgtttttttcct 3757

                                                                        
Query: 554  ctggcattttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcct 613
             |||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 3758 gtggcattttgtaaaaatccactttggggatattctcctggggtcacgtggcaccagcct 3817

                                                                        
Query: 614  gcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtg 673
            || |  |||||||||||||||||||||||||||         || |||||||||||| ||
Sbjct: 3818 gcatatagttccggttcttgttgtgtatgtttg-ttttttttaactgcatccaaaggatg 3876

                                        
Query: 674  ctctgaggtcaataaaatagccaaggcc 701
            | ||||||||||||||| ||||||||||
Sbjct: 3877 cgctgaggtcaataaaacagccaaggcc 3904



 Score =  200 bits (101), Expect = 8e-49
 Identities = 134/145 (92%)
 Strand = Plus / Plus

                                                                        
Query: 17   ggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcac 76
            ||||||||||||||||| | |||| | |||| ||||||||||||||||||||||||||||
Sbjct: 3247 ggtcctggaatttttgcactcctgctatgtcatctctttctcagcctagcccagcctcac 3306

                                                                        
Query: 77   catggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgacta 136
            ||||| |||| |||||  ||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 3307 catggcggacaccttcatgggcacctggaagctagtggacagcaagaattttgatgactg 3366

                                     
Query: 137  catgaagtcaattggtgtgggtttt 161
            |||||||||||||||||||||||||
Sbjct: 3367 catgaagtcaattggtgtgggtttt 3391



 Score =  168 bits (85), Expect = 3e-39
 Identities = 97/101 (96%)
 Strand = Plus / Plus

                                                                        
Query: 259  cagagatcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaagg 318
            ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct: 3493 cagagatcagcttcaagctgggattgaagtttgatgagacaacagcagatgataggaagg 3552

                                                     
Query: 319  tcaagtccattgtgacactggatggaggcaaacttgtccac 359
            |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3553 tcaagtccattgtgacactggatggaagcaaacttgtccac 3593


>Sscrofa_Chr05 
||          Length = 111506441

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 99/117 (84%)
 Strand = Plus / Minus

                                                                            
Query: 17       ggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcac 76
                ||||| ||||||| ||| | |||| |||||||||||||||| | ||||||||||||||| 
Sbjct: 12969740 ggtcccggaatttctgcacacctgctctgtcgtctctttctaaacctagcccagcctcat 12969681

                                                                         
Query: 77       catggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatga 133
                |||||  || ||||||| |||||| |||   ||||  ||||||||||||||||||||
Sbjct: 12969680 catggcagatgccttcgtgggcacttggtcactagcagacagcaagaatttcgatga 12969624


>Sscrofa_Chr02 
||          Length = 162569375

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                            
Query: 659       tgcatccaaagggtgctctgaggtcaataaaatagccaaggcc 701
                 ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 153896009 tgcatccgaagggtgctctgaggtcaataaaacagccaaggcc 153896051



 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 56/62 (90%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                             
Query: 585       attctcctggggtcaggttgcaccagcctgcgttcagttccggttcttgttgtgtatgtt 644
                 |||||| ||||| ||||| |||||||||||||| |||||| ||||||| |||||||||||
Sbjct: 153895920 attctcttgggg-caggtggcaccagcctgcgtacagttctggttcttattgtgtatgtt 153895978

                   
Query: 645       tg 646
                 ||
Sbjct: 153895979 tg 153895980


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,267,492
Number of extensions: 443
Number of successful extensions: 443
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 27
Length of query: 735
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 714
Effective length of database: 2,808,413,156
Effective search space: 2005206993384
Effective search space used: 2005206993384
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)