Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008121
(735 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776738.1| fatty acid-binding protein, heart [Bos taurus]. 254 5e-68
Alignment gi|XP_002688416.1| PREDICTED: fatty acid binding protein 3-like... 221 6e-58
Alignment gi|NP_001071630.1| fatty acid-binding protein, brain [Bos tauru... 191 5e-49
Alignment gi|NP_776739.1| fatty acid-binding protein, adipocyte [Bos taur... 172 3e-43
Alignment gi|NP_001068707.1| myelin P2 protein [Bos taurus]. 162 3e-40
Alignment gi|NP_001179339.1| fatty acid-binding protein 9 [Bos taurus]. 158 4e-39
Alignment gi|XP_002692760.1| PREDICTED: fatty acid-binding protein 9-like... 158 4e-39
Alignment gi|NP_776740.1| fatty acid-binding protein, epidermal [Bos taur... 135 3e-32
Alignment gi|XP_002692761.1| PREDICTED: fatty acid binding protein 12-lik... 135 5e-32
Alignment gi|NP_001008670.1| cellular retinoic acid-binding protein 2 [Bo... 106 2e-23
>ref|NP_776738.1| fatty acid-binding protein, heart [Bos taurus].
Length = 133
Score = 254 bits (649), Expect = 5e-68
Identities = 123/133 (92%), Positives = 131/133 (98%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MVDAF GTWKLVDSKNFDDYMKS+GVGFATRQV NMTKPTTIIEVNGDT+IIKTQSTFK+
Sbjct: 1 MVDAFVGTWKLVDSKNFDDYMKSLGVGFATRQVGNMTKPTTIIEVNGDTVIIKTQSTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVH+QKWNGQET+LVRE+VDGKLILTLTH
Sbjct: 61 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHVQKWNGQETSLVREMVDGKLILTLTH 120
Query: 438 GSAVCTRTYEKEA 476
G+AVCTRTYEK+A
Sbjct: 121 GTAVCTRTYEKQA 133
>ref|XP_002688416.1| PREDICTED: fatty acid binding protein 3-like [Bos taurus].
Length = 153
Score = 221 bits (562), Expect = 6e-58
Identities = 108/146 (73%), Positives = 124/146 (84%)
Frame = +3
Query: 39 CSVVSFSA*PSLTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNG 218
CS + + PSLT VD F GTWKLVDS+NFDDYMKS+GVGFAT+Q AN+TKP T+IEVN
Sbjct: 8 CSFETETVKPSLTTVDTFMGTWKLVDSRNFDDYMKSLGVGFATKQAANITKPITVIEVNV 67
Query: 219 DTIIIKTQSTFKSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVR 398
DTI IKTQS F++ E+SF+LGV F+ETTADDRKVKSIV LDGGK VH+Q WNGQETTLVR
Sbjct: 68 DTITIKTQSVFQNREVSFELGVNFNETTADDRKVKSIVMLDGGKFVHVQNWNGQETTLVR 127
Query: 399 ELVDGKLILTLTHGSAVCTRTYEKEA 476
E+VD KLIL LTH SAVC RTY++EA
Sbjct: 128 EIVDEKLILPLTHCSAVCNRTYKEEA 153
>ref|NP_001071630.1| fatty acid-binding protein, brain [Bos taurus].
Length = 132
Score = 191 bits (485), Expect = 5e-49
Identities = 89/131 (67%), Positives = 108/131 (82%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MV+AF TWKL +S+NFD+YMK++GVGFATRQV N+TKPT II GD ++I+TQSTFK+
Sbjct: 1 MVEAFCATWKLTESQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDRVVIRTQSTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISF LG EFDETTADDR KS+V+LDG KLVH+QKW+G+ET VRE+ DGK+I+TLT
Sbjct: 61 TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMIMTLTF 120
Query: 438 GSAVCTRTYEK 470
G V R YEK
Sbjct: 121 GDVVAVRHYEK 131
>ref|NP_776739.1| fatty acid-binding protein, adipocyte [Bos taurus].
Length = 132
Score = 172 bits (436), Expect = 3e-43
Identities = 82/131 (62%), Positives = 99/131 (75%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KPT II +NG + IK++STFK+
Sbjct: 1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPTLIISLNGGVVTIKSESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EFDE T DDRKVKSIV LD G LV +Q W+G+ TT+ R+L+D K++L
Sbjct: 61 TEISFKLGQEFDEITPDDRKVKSIVNLDEGALVQVQNWDGKSTTIKRKLMDDKMVLECVM 120
Query: 438 GSAVCTRTYEK 470
TR YE+
Sbjct: 121 NGVTATRVYER 131
>ref|NP_001068707.1| myelin P2 protein [Bos taurus].
Length = 132
Score = 162 bits (410), Expect = 3e-40
Identities = 78/131 (59%), Positives = 98/131 (74%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M + F GTWKLV S+NFD+YMK++GVG ATR++ N+ KP II GD I I+T+S FK+
Sbjct: 1 MSNKFLGTWKLVSSENFDEYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESPFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EF+ETTAD+RK KS VTL G L +QKW+G ETT+ R+LVDGK+++
Sbjct: 61 TEISFKLGQEFEETTADNRKTKSTVTLARGSLNQVQKWDGNETTIKRKLVDGKMVVECKM 120
Query: 438 GSAVCTRTYEK 470
VCTR YEK
Sbjct: 121 KDVVCTRIYEK 131
>ref|NP_001179339.1| fatty acid-binding protein 9 [Bos taurus].
Length = 132
Score = 158 bits (400), Expect = 4e-39
Identities = 75/131 (57%), Positives = 97/131 (74%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MV+ F GTWKLV +NFD+YMK +GV A + +A KP II +GD I IKTQS FK+
Sbjct: 1 MVEPFLGTWKLVSRENFDEYMKELGVSVAVQNLAGSAKPRIIISADGDKISIKTQSAFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
+EISFKLG EFDETT D+RKVKSI+TLDGG ++H+QKW G+ETT+ R++VDGK+++
Sbjct: 61 SEISFKLGEEFDETTIDNRKVKSIITLDGGSMIHVQKWLGKETTIKRKIVDGKMLVEYIM 120
Query: 438 GSAVCTRTYEK 470
+ V T EK
Sbjct: 121 NNVVSTGVCEK 131
>ref|XP_002692760.1| PREDICTED: fatty acid-binding protein 9-like [Bos taurus].
Length = 132
Score = 158 bits (400), Expect = 4e-39
Identities = 75/131 (57%), Positives = 97/131 (74%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MV+ F GTWKLV +NFD+YMK +GV A + +A KP II +GD I IKTQS FK+
Sbjct: 1 MVEPFLGTWKLVSRENFDEYMKELGVSVAVQNLAGSAKPRIIISADGDKISIKTQSAFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
+EISFKLG EFDETT D+RKVKSI+TLDGG ++H+QKW G+ETT+ R++VDGK+++
Sbjct: 61 SEISFKLGEEFDETTIDNRKVKSIITLDGGSMIHVQKWLGKETTIKRKIVDGKMLVEYIM 120
Query: 438 GSAVCTRTYEK 470
+ V T EK
Sbjct: 121 NNVVSTGVCEK 131
>ref|NP_776740.1| fatty acid-binding protein, epidermal [Bos taurus].
Length = 135
Score = 135 bits (341), Expect = 3e-32
Identities = 63/133 (47%), Positives = 88/133 (66%)
Frame = +3
Query: 72 LTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTF 251
+ V G W+LV+SK FD+YMK +GVG A R+V M KP II +G + IKT+ST
Sbjct: 1 MATVQQLVGRWRLVESKGFDEYMKEVGVGMALRKVGAMAKPDCIITSDGKNLSIKTESTL 60
Query: 252 KSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTL 431
K+T+ S KLG +F+ETTAD RK +++ G LV Q+W+G+E+T+ R+L DGKL++
Sbjct: 61 KTTQFSCKLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLEDGKLVVVC 120
Query: 432 THGSAVCTRTYEK 470
+ CTR YEK
Sbjct: 121 VMNNVTCTRVYEK 133
>ref|XP_002692761.1| PREDICTED: fatty acid binding protein 12-like isoform 1 [Bos
taurus].
Length = 140
Score = 135 bits (339), Expect = 5e-32
Identities = 64/131 (48%), Positives = 88/131 (67%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MVD F GTWK + +NF++YMK +G+G A+R++ + KPT I D I IKT+S FK+
Sbjct: 1 MVDLFQGTWKSISCENFEEYMKELGIGRASRKLGCLAKPTVTIMTKEDLITIKTKSIFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
+ISFKLG EF+ETT K KS V LD LV +Q W+G+E T+ R+LVD K+++
Sbjct: 61 NDISFKLGEEFEETTPGGHKTKSTVILDDDSLVQVQDWDGKEITIRRKLVDEKMVVESVV 120
Query: 438 GSAVCTRTYEK 470
+ CTRTYE+
Sbjct: 121 NNVTCTRTYER 131
>ref|NP_001008670.1| cellular retinoic acid-binding protein 2 [Bos taurus].
Length = 138
Score = 106 bits (265), Expect = 2e-23
Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
Frame = +3
Query: 90 FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
F+G WK++ S+NF+D +K +GV R+ VA +KP I+ GDT IKT +T ++TE
Sbjct: 4 FSGNWKIIRSENFEDLLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTE 63
Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWNGQETTLVRELV-DGKLILT 428
I+FK+G EF+E T D R KS+V + K+V L K G +T+ REL DG+LILT
Sbjct: 64 INFKIGEEFEEQTVDGRPCKSLVKWESENKMVCEQRLLKGEGPKTSWTRELTNDGELILT 123
Query: 429 LTHGSAVCTRTYEKE 473
+T VCTR Y +E
Sbjct: 124 MTADDIVCTRVYVRE 138
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,124,680
Number of extensions: 759207
Number of successful extensions: 2106
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 2066
Number of HSP's successfully gapped: 21
Length of query: 245
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 146
Effective length of database: 14,405,662
Effective search space: 2103226652
Effective search space used: 2103226652
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008121
(735 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535331.1| PREDICTED: similar to Fatty acid-binding protei... 256 1e-68
Alignment gi|XP_533484.2| PREDICTED: similar to Fatty acid-binding protei... 190 1e-48
Alignment gi|XP_865066.1| PREDICTED: similar to Fatty acid-binding protei... 187 8e-48
Alignment gi|XP_543759.2| PREDICTED: similar to Fatty acid-binding protei... 177 7e-45
Alignment gi|XP_850162.1| PREDICTED: similar to Fatty acid-binding protei... 177 9e-45
Alignment gi|XP_548843.2| PREDICTED: similar to Fatty acid-binding protei... 173 2e-43
Alignment gi|XP_544144.2| PREDICTED: similar to Myelin P2 protein [Canis ... 167 9e-42
Alignment gi|XP_860850.1| PREDICTED: similar to Fatty acid-binding protei... 164 1e-40
Alignment gi|XP_544145.2| PREDICTED: similar to fatty acid binding protei... 158 6e-39
Alignment gi|XP_544146.2| PREDICTED: similar to Myelin P2 protein [Canis ... 139 3e-33
>ref|XP_535331.1| PREDICTED: similar to Fatty acid-binding protein, heart (H-FABP)
(Heart-type fatty acid-binding protein) (Muscle fatty
acid-binding protein) (M-FABP) (Mammary-derived growth
inhibitor) (MDGI) isoform 1 [Canis familiaris].
Length = 133
Score = 256 bits (654), Expect = 1e-68
Identities = 126/133 (94%), Positives = 130/133 (97%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MVDAF GTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTT+IE+NGDTIIIKT STFK+
Sbjct: 1 MVDAFVGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTVIEMNGDTIIIKTHSTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLGVEFDETTADDRKVKS VTLDGGKLVH+QKWNGQETTLVRELVDGKLILTLTH
Sbjct: 61 TEISFKLGVEFDETTADDRKVKSTVTLDGGKLVHVQKWNGQETTLVRELVDGKLILTLTH 120
Query: 438 GSAVCTRTYEKEA 476
GSAVCTRTYEKEA
Sbjct: 121 GSAVCTRTYEKEA 133
>ref|XP_533484.2| PREDICTED: similar to Fatty acid-binding protein, brain (B-FABP)
(Brain lipid-binding protein) (BLBP) (Mammary derived
growth inhibitor related) [Canis familiaris].
Length = 132
Score = 190 bits (482), Expect = 1e-48
Identities = 88/131 (67%), Positives = 107/131 (81%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MV+AF TWKL DS+NFD+YMK++GVGFATRQV N+TKPT II GD ++I+TQ TFK+
Sbjct: 1 MVEAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIIGQEGDKVVIRTQCTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISF LG EFDETTADDR KS+V+LDG KLVH+QKW+G+ET VRE+ DGK+++TLT
Sbjct: 61 TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMVMTLTF 120
Query: 438 GSAVCTRTYEK 470
G V R YEK
Sbjct: 121 GDVVAVRQYEK 131
>ref|XP_865066.1| PREDICTED: similar to Fatty acid-binding protein, heart (H-FABP)
(Heart-type fatty acid-binding protein) (Muscle fatty
acid-binding protein) (M-FABP) (Mammary-derived growth
inhibitor) (MDGI) isoform 2 [Canis familiaris].
Length = 98
Score = 187 bits (475), Expect = 8e-48
Identities = 92/98 (93%), Positives = 96/98 (97%)
Frame = +3
Query: 183 MTKPTTIIEVNGDTIIIKTQSTFKSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHL 362
MTKPTT+IE+NGDTIIIKT STFK+TEISFKLGVEFDETTADDRKVKS VTLDGGKLVH+
Sbjct: 1 MTKPTTVIEMNGDTIIIKTHSTFKNTEISFKLGVEFDETTADDRKVKSTVTLDGGKLVHV 60
Query: 363 QKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA 476
QKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA
Sbjct: 61 QKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA 98
>ref|XP_543759.2| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
(Adipocyte lipid-binding protein) (ALBP) (A-FABP) [Canis
familiaris].
Length = 132
Score = 177 bits (450), Expect = 7e-45
Identities = 86/131 (65%), Positives = 102/131 (77%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKL S+NFDDYMK +GVGFATR+VA M KP+ II VNGD I IK++STFK+
Sbjct: 1 MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPSMIISVNGDVITIKSESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EFDE TADDRKVKSI+TLDGG LV +QKW+G+ TT+ R+ VD KL++
Sbjct: 61 TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVRVQKWDGKSTTIKRKQVDDKLVVECIM 120
Query: 438 GSAVCTRTYEK 470
TR YE+
Sbjct: 121 KGVTSTRIYER 131
>ref|XP_850162.1| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
(Adipocyte lipid-binding protein) (ALBP) (A-FABP)
isoform 1 [Canis familiaris].
Length = 132
Score = 177 bits (449), Expect = 9e-45
Identities = 86/131 (65%), Positives = 101/131 (77%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKL S+NFDDYMK +GVGFATR+VA M KP II VNGD I IK++STFK+
Sbjct: 1 MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EFDE TADDRKVKSI+TLDGG LV +QKW+G+ TT+ R+ VD KL++
Sbjct: 61 TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVQVQKWDGKSTTIKRKRVDDKLVVECIM 120
Query: 438 GSAVCTRTYEK 470
TR YE+
Sbjct: 121 KGVTSTRIYER 131
>ref|XP_548843.2| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
(Adipocyte lipid-binding protein) (ALBP) (A-FABP) [Canis
familiaris].
Length = 183
Score = 173 bits (438), Expect = 2e-43
Identities = 84/131 (64%), Positives = 99/131 (75%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKL S+NFDDYMK +GVGFATR+VA M KP II VNGD I IK++STFK+
Sbjct: 52 MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNRIISVNGDVITIKSESTFKN 111
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EFDE TAD R VKSI+TLDGG LV +QKW+G+ TT+ R+ VD KL++
Sbjct: 112 TEISFKLGQEFDEVTADYRNVKSIITLDGGVLVQVQKWDGESTTIKRKQVDDKLVVECIR 171
Query: 438 GSAVCTRTYEK 470
TR YE+
Sbjct: 172 KGVTSTRIYER 182
>ref|XP_544144.2| PREDICTED: similar to Myelin P2 protein [Canis familiaris].
Length = 132
Score = 167 bits (423), Expect = 9e-42
Identities = 80/131 (61%), Positives = 101/131 (77%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M + F GTWKLV S++FDDYMK++GVG ATR++ N+ KP II GD I I+T+STFK+
Sbjct: 1 MSNRFLGTWKLVSSEHFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EF+ETTAD+RK KSIVTL G L +QKW+G+ETT+ R+LVDGK+++
Sbjct: 61 TEISFKLGQEFEETTADNRKAKSIVTLSRGSLNQVQKWDGKETTIKRKLVDGKMVVECKM 120
Query: 438 GSAVCTRTYEK 470
VCTR YEK
Sbjct: 121 KGVVCTRIYEK 131
>ref|XP_860850.1| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP)
(Adipocyte lipid-binding protein) (ALBP) (A-FABP) (P2
adipocyte protein) (Myelin P2 protein homolog) (3T3-L1
lipid binding protein) (422 protein) (P15) isoform 2
[Canis familiaris].
Length = 111
Score = 164 bits (414), Expect = 1e-40
Identities = 78/108 (72%), Positives = 90/108 (83%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKL S+NFDDYMK +GVGFATR+VA M KP II VNGD I IK++STFK+
Sbjct: 1 MCDAFVGTWKLSSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRE 401
TEISFKLG EFDE TADDRKVKSI+TLDGG LV +QKW+G+ TT+ R+
Sbjct: 61 TEISFKLGQEFDEVTADDRKVKSIITLDGGVLVQVQKWDGKSTTIKRK 108
>ref|XP_544145.2| PREDICTED: similar to fatty acid binding protein 9, testis [Canis
familiaris].
Length = 132
Score = 158 bits (399), Expect = 6e-39
Identities = 71/131 (54%), Positives = 99/131 (75%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M++ F GTWKLV S+NF++Y+K +G+ A R +A + KP I NGD + IKT+S+FK+
Sbjct: 1 MIEPFLGTWKLVSSENFEEYLKQLGMNAAARNLAGLAKPRISISANGDEVNIKTESSFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EF+E TAD+RKVKSI+TL G ++H+QKW G+ETT+ R++VDGK+++ +
Sbjct: 61 TEISFKLGEEFEEITADNRKVKSIITLTSGSMIHVQKWLGKETTIKRQIVDGKMVVEYSM 120
Query: 438 GSAVCTRTYEK 470
V TR YEK
Sbjct: 121 NKTVSTRIYEK 131
>ref|XP_544146.2| PREDICTED: similar to Myelin P2 protein [Canis familiaris].
Length = 140
Score = 139 bits (350), Expect = 3e-33
Identities = 64/131 (48%), Positives = 90/131 (68%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MVD G WK + +NF++YMK +G+G A+R++A + KPT I D I IKT+S FK+
Sbjct: 1 MVDQLQGKWKSISCENFEEYMKELGIGRASRKLACLAKPTVTISTQEDWITIKTKSIFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
+ISFKLG EF+ETT K KS+VTLD L+ +Q W+G+E T+ R+LVDGK+++
Sbjct: 61 NKISFKLGEEFEETTPGGHKTKSVVTLDNDSLIQVQDWDGKENTIRRKLVDGKMVVESAV 120
Query: 438 GSAVCTRTYEK 470
+ CTRTYE+
Sbjct: 121 NNVTCTRTYER 131
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,099,858
Number of extensions: 754075
Number of successful extensions: 2198
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2163
Number of HSP's successfully gapped: 20
Length of query: 245
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 145
Effective length of database: 15,540,904
Effective search space: 2253431080
Effective search space used: 2253431080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008121
(735 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093401.1| fatty acid-binding protein, heart [Sus scrof... 265 1e-71
Alignment gi|XP_003127755.1| PREDICTED: fatty acid-binding protein, heart... 254 4e-68
Alignment gi|XP_003359943.1| PREDICTED: fatty acid-binding protein, heart... 239 1e-63
Alignment gi|NP_001020400.1| fatty acid-binding protein, brain [Sus scrof... 192 2e-49
Alignment gi|NP_001002817.1| fatty acid-binding protein, adipocyte [Sus s... 176 1e-44
Alignment gi|NP_001171994.1| myelin P2 protein [Sus scrofa]. 168 3e-42
Alignment gi|NP_001034835.1| fatty acid-binding protein, epidermal [Sus s... 130 7e-31
Alignment gi|NP_001157981.1| cellular retinoic acid-binding protein 2 [Su... 106 1e-23
Alignment gi|XP_003127812.2| PREDICTED: fatty acid-binding protein, heart... 105 3e-23
Alignment gi|NP_001121964.1| cellular retinoic acid binding protein 1 [Su... 101 4e-22
>ref|NP_001093401.1| fatty acid-binding protein, heart [Sus scrofa].
Length = 133
Score = 265 bits (678), Expect = 1e-71
Identities = 133/133 (100%), Positives = 133/133 (100%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS
Sbjct: 1 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH
Sbjct: 61 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 120
Query: 438 GSAVCTRTYEKEA 476
GSAVCTRTYEKEA
Sbjct: 121 GSAVCTRTYEKEA 133
>ref|XP_003127755.1| PREDICTED: fatty acid-binding protein, heart-like [Sus scrofa].
Length = 211
Score = 254 bits (648), Expect = 4e-68
Identities = 127/137 (92%), Positives = 130/137 (94%)
Frame = +3
Query: 66 PSLTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQS 245
PSLT+VDAFAGTWKLVDSKNF DYMKSIGVGFATRQVANMTKPTTIIEVNGDT+ IKTQS
Sbjct: 75 PSLTVVDAFAGTWKLVDSKNFHDYMKSIGVGFATRQVANMTKPTTIIEVNGDTVTIKTQS 134
Query: 246 TFKSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLIL 425
TFKSTEISFKLGV FDETTADDRKVKSIVT DG KLVH+QKWNGQETTLVRELVDGKLIL
Sbjct: 135 TFKSTEISFKLGVAFDETTADDRKVKSIVTPDGSKLVHVQKWNGQETTLVRELVDGKLIL 194
Query: 426 TLTHGSAVCTRTYEKEA 476
TLTHGS VC RTYEKEA
Sbjct: 195 TLTHGSEVCIRTYEKEA 211
>ref|XP_003359943.1| PREDICTED: fatty acid-binding protein, heart-like [Sus scrofa].
Length = 133
Score = 239 bits (609), Expect = 1e-63
Identities = 119/133 (89%), Positives = 123/133 (92%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M D F G WKLVDSKNFDD MKSIGVGFATRQVANMTKPTT+IEVNGDTI IKTQSTFKS
Sbjct: 1 MADTFMGIWKLVDSKNFDDCMKSIGVGFATRQVANMTKPTTVIEVNGDTITIKTQSTFKS 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
EISFKLG++FDETTADDRKVKSIVTLDG KLVH+QKWNGQETTLVRELVDGKLILTLTH
Sbjct: 61 AEISFKLGLKFDETTADDRKVKSIVTLDGSKLVHVQKWNGQETTLVRELVDGKLILTLTH 120
Query: 438 GSAVCTRTYEKEA 476
GSAVCT YEKEA
Sbjct: 121 GSAVCTCIYEKEA 133
>ref|NP_001020400.1| fatty acid-binding protein, brain [Sus scrofa].
Length = 132
Score = 192 bits (488), Expect = 2e-49
Identities = 89/131 (67%), Positives = 108/131 (82%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MV+AF TWKL DS+NFD+YMK++GVGFATRQV N+TKPT II GD ++I+TQSTFK+
Sbjct: 1 MVEAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTQSTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISF LG EFDETTADDR KS+V+LDG KLVH+QKW+G+ET VRE+ DGK+++TLT
Sbjct: 61 TEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKMVMTLTF 120
Query: 438 GSAVCTRTYEK 470
G V R YEK
Sbjct: 121 GDVVAVRHYEK 131
>ref|NP_001002817.1| fatty acid-binding protein, adipocyte [Sus scrofa].
Length = 132
Score = 176 bits (446), Expect = 1e-44
Identities = 84/131 (64%), Positives = 102/131 (77%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KP II VNGD I I+++STFK+
Sbjct: 1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNLIITVNGDMITIRSESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEI+FKLG EFDE TADDRKVKS +TLDGG LV +QKW+G+ TT+ R++VD KL++
Sbjct: 61 TEIAFKLGQEFDEVTADDRKVKSTITLDGGALVQVQKWDGKTTTINRKIVDDKLVVECIM 120
Query: 438 GSAVCTRTYEK 470
TR YE+
Sbjct: 121 KGVTATRIYER 131
>ref|NP_001171994.1| myelin P2 protein [Sus scrofa].
Length = 132
Score = 168 bits (425), Expect = 3e-42
Identities = 80/131 (61%), Positives = 101/131 (77%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M + F GTWKLV S+NFDDYMK++GVG ATR++ N+ KP II GD I I+T+STFK+
Sbjct: 1 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EF+ETTAD+RK KS+VTL G L +QKW+G+ETT+ R+LVDGK+++
Sbjct: 61 TEISFKLGQEFEETTADNRKAKSVVTLARGSLNQVQKWDGKETTIKRKLVDGKMVVECKM 120
Query: 438 GSAVCTRTYEK 470
VCTR YEK
Sbjct: 121 KDVVCTRIYEK 131
>ref|NP_001034835.1| fatty acid-binding protein, epidermal [Sus scrofa].
Length = 135
Score = 130 bits (327), Expect = 7e-31
Identities = 58/133 (43%), Positives = 88/133 (66%)
Frame = +3
Query: 72 LTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTF 251
+ + G W+LV+SK FD+YMK +GVG A R++ M KP II +G + IKT+ST
Sbjct: 1 MASIQQLVGRWRLVESKGFDEYMKEVGVGMALRKMGAMAKPDCIITFDGKDLTIKTESTL 60
Query: 252 KSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTL 431
K+T+ S LG +F+ETTAD RK +++ G+LV Q+W+G+E+T+ R++ +GKL++
Sbjct: 61 KTTQFSCNLGQKFEETTADGRKTQTVCDFTNGELVQHQEWDGKESTITRKVENGKLVVVC 120
Query: 432 THGSAVCTRTYEK 470
+ CTR YEK
Sbjct: 121 VMNNVTCTRVYEK 133
>ref|NP_001157981.1| cellular retinoic acid-binding protein 2 [Sus scrofa].
Length = 138
Score = 106 bits (265), Expect = 1e-23
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
Frame = +3
Query: 90 FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
F+G WK++ S+NF+D +K +GV R+ VA +KP I+ +GDT IKT +T ++TE
Sbjct: 4 FSGNWKIIRSENFEDLLKVLGVNVMLRKIAVAAASKPAVEIKQDGDTFYIKTSTTVRTTE 63
Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWNGQETTLVRELV-DGKLILT 428
I+FK+G EF+E T D R KS+V + K+V L K G +T+ REL DG+LILT
Sbjct: 64 INFKIGEEFEEQTVDGRPCKSLVKWESEDKMVCEQRLLKGEGPKTSWTRELTNDGELILT 123
Query: 429 LTHGSAVCTRTYEKE 473
+T VCTR Y +E
Sbjct: 124 MTADDIVCTRVYVRE 138
>ref|XP_003127812.2| PREDICTED: fatty acid-binding protein, heart-like [Sus scrofa].
Length = 53
Score = 105 bits (262), Expect = 3e-23
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +3
Query: 324 SIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA 476
SIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA
Sbjct: 3 SIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAVCTRTYEKEA 53
>ref|NP_001121964.1| cellular retinoic acid binding protein 1 [Sus scrofa].
Length = 137
Score = 101 bits (252), Expect = 4e-22
Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Frame = +3
Query: 90 FAGTWKLVDSKNFDDYMKSIGVGFATRQVA--NMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
FAGTWK+ S+NFD+ +K++GV R+VA +KP I +GD IKT +T ++TE
Sbjct: 4 FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63
Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDGGKLVH----LQKWNGQETTLVRELVDGKLILTL 431
I+FK+G F+E T D RK +S+ T + +H L + +G +T REL + +LILT
Sbjct: 64 INFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123
Query: 432 THGSAVCTRTYEKE 473
VCTR Y +E
Sbjct: 124 GADDVVCTRIYVRE 137
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,319,795
Number of extensions: 523379
Number of successful extensions: 1356
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 1328
Number of HSP's successfully gapped: 23
Length of query: 245
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,953,820
Effective search space: 1334119180
Effective search space used: 1334119180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008121
(735 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034304.1| fatty acid-binding protein, heart [Mus musculus]. 240 9e-64
Alignment gi|NP_067247.1| fatty acid-binding protein, brain [Mus musculus]. 180 9e-46
Alignment gi|NP_077717.1| fatty acid-binding protein, adipocyte [Mus musc... 175 3e-44
Alignment gi|NP_001025476.1| myelin P2 protein [Mus musculus]. 162 2e-40
Alignment gi|NP_035728.2| fatty acid-binding protein 9 [Mus musculus]. 142 3e-34
Alignment gi|NP_083586.1| fatty acid-binding protein 12 [Mus musculus]. 142 3e-34
Alignment gi|NP_034764.1| fatty acid-binding protein, epidermal [Mus musc... 132 3e-31
Alignment gi|NP_031785.1| cellular retinoic acid-binding protein 2 [Mus m... 106 2e-23
Alignment gi|NP_038524.1| cellular retinoic acid-binding protein 1 [Mus m... 100 9e-22
Alignment gi|NP_033060.3| retinol-binding protein 2 [Mus musculus]. 96 3e-20
>ref|NP_034304.1| fatty acid-binding protein, heart [Mus musculus].
Length = 133
Score = 240 bits (612), Expect = 9e-64
Identities = 116/133 (87%), Positives = 125/133 (93%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKLVDSKNFDDYMKS+GVGFATRQVA+MTKPTTIIE NGDTI IKTQSTFK+
Sbjct: 1 MADAFVGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDTITIKTQSTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEI+F+LG+EFDE TADDRKVKS+VTLDGGKL+H+QKWNGQETTL RELVDGKLILTLTH
Sbjct: 61 TEINFQLGIEFDEVTADDRKVKSLVTLDGGKLIHVQKWNGQETTLTRELVDGKLILTLTH 120
Query: 438 GSAVCTRTYEKEA 476
GS V TRTYEKEA
Sbjct: 121 GSVVSTRTYEKEA 133
>ref|NP_067247.1| fatty acid-binding protein, brain [Mus musculus].
Length = 132
Score = 180 bits (457), Expect = 9e-46
Identities = 82/131 (62%), Positives = 104/131 (79%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MVDAF TWKL DS+NFD+YMK++GVGFATRQV N+TKPT II G ++I+TQ TFK+
Sbjct: 1 MVDAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGGKVVIRTQCTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEI+F+LG EF+ET+ DDR KS+V LDG KL+H+QKW+G+ET RE+ DGK+++TLT
Sbjct: 61 TEINFQLGEEFEETSIDDRNCKSVVRLDGDKLIHVQKWDGKETNCTREIKDGKMVVTLTF 120
Query: 438 GSAVCTRTYEK 470
G V R YEK
Sbjct: 121 GDIVAVRCYEK 131
>ref|NP_077717.1| fatty acid-binding protein, adipocyte [Mus musculus].
Length = 132
Score = 175 bits (444), Expect = 3e-44
Identities = 84/131 (64%), Positives = 101/131 (77%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KP II VNGD + I+++STFK+
Sbjct: 1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDLVTIRSESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLGVEFDE TADDRKVKSI+TLDGG LV +QKW+G+ TT+ R+ KL++
Sbjct: 61 TEISFKLGVEFDEITADDRKVKSIITLDGGALVQVQKWDGKSTTIKRKRDGDKLVVECVM 120
Query: 438 GSAVCTRTYEK 470
TR YE+
Sbjct: 121 KGVTSTRVYER 131
>ref|NP_001025476.1| myelin P2 protein [Mus musculus].
Length = 132
Score = 162 bits (411), Expect = 2e-40
Identities = 77/131 (58%), Positives = 99/131 (75%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M + F GTWKLV S++FDDYMK++GVG A R++ N+ KPT II GD I I+T+S FK+
Sbjct: 1 MSNKFLGTWKLVSSEHFDDYMKALGVGLANRKLGNLAKPTVIISKKGDYITIRTESAFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EFDETTAD+RK KSIVTL+ G L +QKW+G+ET + R L+DG++++
Sbjct: 61 TEISFKLGQEFDETTADNRKAKSIVTLERGSLKQVQKWDGKETAIRRTLLDGRMVVECIM 120
Query: 438 GSAVCTRTYEK 470
VCTR YEK
Sbjct: 121 KGVVCTRIYEK 131
>ref|NP_035728.2| fatty acid-binding protein 9 [Mus musculus].
Length = 132
Score = 142 bits (358), Expect = 3e-34
Identities = 63/131 (48%), Positives = 98/131 (74%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M++ F GTWKL+ S+NF++Y++ +GV R+VA + KP+ I NG+ + I+ S ++
Sbjct: 1 MIEPFLGTWKLISSENFENYVRELGVECEPRKVACLIKPSVSISFNGERMDIQAGSACRN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EF+ETTAD+RKVKS++T +GG ++ +QKW G++TT+ R++VDGK+++ T
Sbjct: 61 TEISFKLGEEFEETTADNRKVKSLITFEGGSMIQVQKWLGKQTTIKRKIVDGKMVVECTM 120
Query: 438 GSAVCTRTYEK 470
+ V TR YE+
Sbjct: 121 NNVVSTRIYER 131
>ref|NP_083586.1| fatty acid-binding protein 12 [Mus musculus].
Length = 132
Score = 142 bits (357), Expect = 3e-34
Identities = 68/131 (51%), Positives = 89/131 (67%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MVD GTWK V NF++YMK +GVG A+R++ + KPT I +GD I IKT+S FK+
Sbjct: 1 MVDQLQGTWKSVSCDNFENYMKELGVGRASRKLGCLAKPTVTISTDGDLITIKTKSIFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
EISFKLG EF+ETT RK KS V LD LV +Q W+G+E T+ R LVDGK+++
Sbjct: 61 KEISFKLGEEFEETTPSGRKSKSTVILDNDSLVQVQDWDGKEATICRRLVDGKMVVESAV 120
Query: 438 GSAVCTRTYEK 470
+ CTRTY++
Sbjct: 121 NNVTCTRTYQR 131
>ref|NP_034764.1| fatty acid-binding protein, epidermal [Mus musculus].
Length = 135
Score = 132 bits (331), Expect = 3e-31
Identities = 61/125 (48%), Positives = 87/125 (69%)
Frame = +3
Query: 96 GTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKSTEISFK 275
G W+L++S F++YMK +GVG A R++A M KP II +G+ I +KT+ST K+T S
Sbjct: 9 GKWRLMESHGFEEYMKELGVGLALRKMAAMAKPDCIITCDGNNITVKTESTVKTTVFSCN 68
Query: 276 LGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAVCT 455
LG +FDETTAD RK +++ T G LV Q+W+G+E+T+ R+L DGK+I+ +A CT
Sbjct: 69 LGEKFDETTADGRKTETVCTFQDGALVQHQQWDGKESTITRKLKDGKMIVECVMNNATCT 128
Query: 456 RTYEK 470
R YEK
Sbjct: 129 RVYEK 133
>ref|NP_031785.1| cellular retinoic acid-binding protein 2 [Mus musculus].
Length = 138
Score = 106 bits (264), Expect = 2e-23
Identities = 60/135 (44%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
Frame = +3
Query: 90 FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
F+G WK++ S+NF++ +K++GV R+ VA +KP I+ DT IKT +T ++TE
Sbjct: 4 FSGNWKIIRSENFEEMLKALGVNMMMRKIAVAAASKPAVEIKQENDTFYIKTSTTVRTTE 63
Query: 264 ISFKLGVEFDETTADDRKVKSIVTLD-GGKLV---HLQKWNGQETTLVRELV-DGKLILT 428
I+FK+G EF+E T D R KS+V + G K+V L K G +T+ REL DG+LILT
Sbjct: 64 INFKIGEEFEEQTVDGRPCKSLVKWESGNKMVCEQRLLKGEGPKTSWSRELTNDGELILT 123
Query: 429 LTHGSAVCTRTYEKE 473
+T VCTR Y +E
Sbjct: 124 MTADDVVCTRVYVRE 138
>ref|NP_038524.1| cellular retinoic acid-binding protein 1 [Mus musculus].
Length = 137
Score = 100 bits (250), Expect = 9e-22
Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Frame = +3
Query: 90 FAGTWKLVDSKNFDDYMKSIGVGFATRQVA--NMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
FAGTWK+ S+NFD+ +K++GV R+VA +KP I +GD IKT +T ++TE
Sbjct: 4 FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63
Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDGGKLVH----LQKWNGQETTLVRELVDGKLILTL 431
I+FK+G F+E T D RK +S+ T + +H L + +G +T REL + +LILT
Sbjct: 64 INFKVGEGFEEETVDGRKCRSLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123
Query: 432 THGSAVCTRTYEKE 473
VCTR Y +E
Sbjct: 124 GADDVVCTRIYVRE 137
>ref|NP_033060.3| retinol-binding protein 2 [Mus musculus].
Length = 134
Score = 95.9 bits (237), Expect = 3e-20
Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Frame = +3
Query: 96 GTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKSTEISFK 275
GTW++ ++NF+ YMK++ + FATR++A T II +GD KT STF++ ++ F
Sbjct: 7 GTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKIITQDGDNFKTKTNSTFRNYDLDFT 66
Query: 276 LGVEFDETT--ADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTHGSAV 449
+GVEFDE T D R VK++VT +G LV +QK + + + KL L LT G V
Sbjct: 67 VGVEFDEHTKGLDGRHVKTLVTWEGNTLVCVQKGEKENRGWKQWVEGDKLYLELTCGDQV 126
Query: 450 CTRTYEKE 473
C + ++K+
Sbjct: 127 CRQVFKKK 134
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,520,568
Number of extensions: 639731
Number of successful extensions: 1990
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1928
Number of HSP's successfully gapped: 14
Length of query: 245
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 146
Effective length of database: 12,643,995
Effective search space: 1846023270
Effective search space used: 1846023270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008121
(735 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004093.1| fatty acid-binding protein, heart [Homo sapiens]. 246 1e-65
Alignment gi|NP_001437.1| fatty acid-binding protein, brain [Homo sapiens]. 189 3e-48
Alignment gi|NP_001433.1| fatty acid-binding protein, adipocyte [Homo sap... 176 2e-44
Alignment gi|NP_002668.1| myelin P2 protein [Homo sapiens]. 167 7e-42
Alignment gi|NP_001073995.1| fatty acid-binding protein 9 [Homo sapiens]. 159 2e-39
Alignment gi|NP_001098751.1| fatty acid-binding protein 12 [Homo sapiens]. 147 7e-36
Alignment gi|NP_001435.1| fatty acid-binding protein, epidermal [Homo sap... 133 2e-31
Alignment gi|NP_001186652.1| cellular retinoic acid-binding protein 2 [Ho... 104 7e-23
Alignment gi|NP_001869.1| cellular retinoic acid-binding protein 2 [Homo ... 104 7e-23
Alignment gi|NP_004369.1| cellular retinoic acid-binding protein 1 [Homo ... 101 6e-22
>ref|NP_004093.1| fatty acid-binding protein, heart [Homo sapiens].
Length = 133
Score = 246 bits (628), Expect = 1e-65
Identities = 120/133 (90%), Positives = 128/133 (96%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MVDAF GTWKLVDSKNFDDYMKS+GVGFATRQVA+MTKPTTIIE NGD + +KT STFK+
Sbjct: 1 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKW+GQETTLVREL+DGKLILTLTH
Sbjct: 61 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH 120
Query: 438 GSAVCTRTYEKEA 476
G+AVCTRTYEKEA
Sbjct: 121 GTAVCTRTYEKEA 133
>ref|NP_001437.1| fatty acid-binding protein, brain [Homo sapiens].
Length = 132
Score = 189 bits (479), Expect = 3e-48
Identities = 87/131 (66%), Positives = 108/131 (82%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MV+AF TWKL +S+NFD+YMK++GVGFATRQV N+TKPT II GD ++I+T STFK+
Sbjct: 1 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISF+LG EFDETTADDR KS+V+LDG KLVH+QKW+G+ET VRE+ DGK+++TLT
Sbjct: 61 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF 120
Query: 438 GSAVCTRTYEK 470
G V R YEK
Sbjct: 121 GDVVAVRHYEK 131
>ref|NP_001433.1| fatty acid-binding protein, adipocyte [Homo sapiens].
Length = 132
Score = 176 bits (446), Expect = 2e-44
Identities = 85/131 (64%), Positives = 100/131 (76%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M DAF GTWKLV S+NFDDYMK +GVGFATR+VA M KP II VNGD I IK++STFK+
Sbjct: 1 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISF LG EFDE TADDRKVKS +TLDGG LVH+QKW+G+ TT+ R+ D KL++
Sbjct: 61 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM 120
Query: 438 GSAVCTRTYEK 470
TR YE+
Sbjct: 121 KGVTSTRVYER 131
>ref|NP_002668.1| myelin P2 protein [Homo sapiens].
Length = 132
Score = 167 bits (424), Expect = 7e-42
Identities = 80/131 (61%), Positives = 101/131 (77%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M + F GTWKLV S+NFDDYMK++GVG ATR++ N+ KPT II GD I I+T+STFK+
Sbjct: 1 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
TEISFKLG EF+ETTAD+RK KSIVTL G L +Q+W+G+ETT+ R+LV+GK++
Sbjct: 61 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM 120
Query: 438 GSAVCTRTYEK 470
VCTR YEK
Sbjct: 121 KGVVCTRIYEK 131
>ref|NP_001073995.1| fatty acid-binding protein 9 [Homo sapiens].
Length = 132
Score = 159 bits (403), Expect = 2e-39
Identities = 73/131 (55%), Positives = 100/131 (76%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
MV+ F GTWKLV S+NF+DYMK +GV FA R +A + KPT I V+G + I+T+S+F+
Sbjct: 1 MVEPFLGTWKLVSSENFEDYMKELGVNFAARNMAGLVKPTVTISVDGKMMTIRTESSFQD 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
T+ISFKLG EFDETTAD+RKVKS +TL+ G ++H+QKW G+ETT+ R++VD K+++
Sbjct: 61 TKISFKLGEEFDETTADNRKVKSTITLENGSMIHVQKWLGKETTIKRKIVDEKMVVECKM 120
Query: 438 GSAVCTRTYEK 470
+ V TR YEK
Sbjct: 121 NNIVSTRIYEK 131
>ref|NP_001098751.1| fatty acid-binding protein 12 [Homo sapiens].
Length = 140
Score = 147 bits (372), Expect = 7e-36
Identities = 68/131 (51%), Positives = 92/131 (70%)
Frame = +3
Query: 78 MVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKS 257
M+D GTWK + +N +DYMK +G+G A+R++ + KPT I +GD I IKT+S FK+
Sbjct: 1 MIDQLQGTWKSISCENSEDYMKELGIGRASRKLGRLAKPTVTISTDGDVITIKTKSIFKN 60
Query: 258 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 437
EISFKLG EF+E T K KS VTLD L+ +Q W+G+ETT+ R+LVDGK+++ T
Sbjct: 61 NEISFKLGEEFEEITPGGHKTKSKVTLDKESLIQVQDWDGKETTITRKLVDGKMVVESTV 120
Query: 438 GSAVCTRTYEK 470
S +CTRTYEK
Sbjct: 121 NSVICTRTYEK 131
>ref|NP_001435.1| fatty acid-binding protein, epidermal [Homo sapiens].
Length = 135
Score = 133 bits (334), Expect = 2e-31
Identities = 62/133 (46%), Positives = 87/133 (65%)
Frame = +3
Query: 72 LTMVDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTF 251
+ V G W+LVDSK FD+YMK +GVG A R++ M KP II +G + IKT+ST
Sbjct: 1 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL 60
Query: 252 KSTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWNGQETTLVRELVDGKLILTL 431
K+T+ S LG +F+ETTAD RK +++ G LV Q+W+G+E+T+ R+L DGKL++
Sbjct: 61 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC 120
Query: 432 THGSAVCTRTYEK 470
+ CTR YEK
Sbjct: 121 VMNNVTCTRIYEK 133
>ref|NP_001186652.1| cellular retinoic acid-binding protein 2 [Homo sapiens].
Length = 138
Score = 104 bits (260), Expect = 7e-23
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
Frame = +3
Query: 90 FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
F+G WK++ S+NF++ +K +GV R+ VA +KP I+ GDT IKT +T ++TE
Sbjct: 4 FSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTE 63
Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWNGQETTLVRELV-DGKLILT 428
I+FK+G EF+E T D R KS+V + K+V L K G +T+ REL DG+LILT
Sbjct: 64 INFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILT 123
Query: 429 LTHGSAVCTRTYEKE 473
+T VCTR Y +E
Sbjct: 124 MTADDVVCTRVYVRE 138
>ref|NP_001869.1| cellular retinoic acid-binding protein 2 [Homo sapiens].
Length = 138
Score = 104 bits (260), Expect = 7e-23
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
Frame = +3
Query: 90 FAGTWKLVDSKNFDDYMKSIGVGFATRQ--VANMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
F+G WK++ S+NF++ +K +GV R+ VA +KP I+ GDT IKT +T ++TE
Sbjct: 4 FSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTE 63
Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWNGQETTLVRELV-DGKLILT 428
I+FK+G EF+E T D R KS+V + K+V L K G +T+ REL DG+LILT
Sbjct: 64 INFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILT 123
Query: 429 LTHGSAVCTRTYEKE 473
+T VCTR Y +E
Sbjct: 124 MTADDVVCTRVYVRE 138
>ref|NP_004369.1| cellular retinoic acid-binding protein 1 [Homo sapiens].
Length = 137
Score = 101 bits (252), Expect = 6e-22
Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Frame = +3
Query: 90 FAGTWKLVDSKNFDDYMKSIGVGFATRQVA--NMTKPTTIIEVNGDTIIIKTQSTFKSTE 263
FAGTWK+ S+NFD+ +K++GV R+VA +KP I +GD IKT +T ++TE
Sbjct: 4 FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTE 63
Query: 264 ISFKLGVEFDETTADDRKVKSIVTLDGGKLVH----LQKWNGQETTLVRELVDGKLILTL 431
I+FK+G F+E T D RK +S+ T + +H L + +G +T REL + +LILT
Sbjct: 64 INFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELILTF 123
Query: 432 THGSAVCTRTYEKE 473
VCTR Y +E
Sbjct: 124 GADDVVCTRIYVRE 137
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,715,417
Number of extensions: 746189
Number of successful extensions: 2154
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2110
Number of HSP's successfully gapped: 17
Length of query: 245
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 145
Effective length of database: 15,000,764
Effective search space: 2175110780
Effective search space used: 2175110780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008121
(735 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 983 0.0
Sscrofa_Chr17 940 0.0
Sscrofa_Chr13 829 0.0
Sscrofa_Chr10 757 0.0
Sscrofa_Chr04 454 e-125
gb|GL896536.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 222 2e-55
Sscrofa_Chr05 90 2e-15
Sscrofa_Chr02 70 2e-09
>Sscrofa_Chr06
|| Length = 157765593
Score = 983 bits (496), Expect = 0.0
Identities = 634/681 (93%), Gaps = 4/681 (0%)
Strand = Plus / Minus
Query: 24 gaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcaccatggtg 83
|||| ||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 75997386 gaatgtttgcacgcctgctctgtcatctctttctcagcctagcccagcctcaccgtggtg 75997327
Query: 84 gacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgactacatgaag 143
|| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 75997326 gatgccttcgcaggcacctggaagctagtggacagcaagaatttccatgactacatgaaa 75997267
Query: 144 tcaattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctaccacaatc 203
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75997266 tcaattggtgtgggtttcgccaccaggcaggtggccaacatgaccaagcctaccacaatc 75997207
Query: 204 atcgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagagcacagag 263
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 75997206 atcgaagtgaatggggacacagtcaccataaaaacacaaagcaccttcaagagcacagag 75997147
Query: 264 atcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaaggtcaag 323
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 75997146 atcagcttcaagctgggagtggcgtttgatgagacaacagcagatgacaggaaggtcaag 75997087
Query: 324 tccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaagag 383
||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 75997086 tccatagtgacaccggatggaagcaaacttgtccacgtgcagaagtggaatggacaagag 75997027
Query: 384 acaacgcttgttcgggaactagttgatgggaaactcatcctgacactcacccatggcagt 443
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 75997026 acaacgcttgttcgggaactagttgatgggaaacttatcctgacactcacccacggcagt 75996967
Query: 444 gcagtttgcactcgcacttacgagaaagaggcatgacctgcccatcccttcg---actgt 500
| ||| |||| ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 75996966 gaagtgtgcattcgcacttatgagaaagaggcatgacctgcccatcccttcatcaactac 75996907
Query: 501 tcctgccaattggctactcctggactcagcaccagattgcctcattttttcctctggcat 560
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75996906 tcctgccgattggctactcctggactcagcaccagattgcctcattttttcctctggcat 75996847
Query: 561 tttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcctgcgttca 620
|||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct: 75996846 tttgtaaaaatccactttggagatattctcctggggtcagattgcaccagcctgcgttta 75996787
Query: 621 gttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtgctctgag 680
|||||||||||| ||||||||||||| | || |||||||||||||||| |||
Sbjct: 75996786 gttccggttctttttgtgtatgtttgttttttttaactt-catccaaagggtgctccgag 75996728
Query: 681 gtcaataaaatagccaaggcc 701
|||||||||||||||||||||
Sbjct: 75996727 gtcaataaaatagccaaggcc 75996707
Score = 496 bits (250), Expect = e-138
Identities = 268/277 (96%)
Strand = Plus / Minus
Query: 425 gacactcacccatggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81632950 gacactcacccatggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgc 81632891
Query: 485 ccatcccttcgactgttcctgccaattggctactcctggactcagcaccagattgcctca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81632890 ccatcccttcgactgttcctgccaattggctactcctggactcagcaccagattgcctca 81632831
Query: 545 ttttttcctctggcattttgtaaaaatctactttggggatattctcctggggtcaggttg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81632830 ttttttcctctggcattttgtaaaaatctactttggggatattctcctggggtcaggttg 81632771
Query: 605 caccagcctgcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatc 664
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 81632770 caccagcctgcgttcagttccggttcttgttgtgtatgtttgtttttttttaattgcatc 81632711
Query: 665 caaagggtgctctgaggtcaataaaatagccaaggcc 701
|||||||||||||||||||||||||||||||||||||
Sbjct: 81632710 caaagggtgctctgaggtcaataaaatagccaaggcc 81632674
Score = 496 bits (250), Expect = e-138
Identities = 268/277 (96%)
Strand = Plus / Plus
Query: 425 gacactcacccatggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81715589 gacactcacccatggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgc 81715648
Query: 485 ccatcccttcgactgttcctgccaattggctactcctggactcagcaccagattgcctca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81715649 ccatcccttcgactgttcctgccaattggctactcctggactcagcaccagattgcctca 81715708
Query: 545 ttttttcctctggcattttgtaaaaatctactttggggatattctcctggggtcaggttg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81715709 ttttttcctctggcattttgtaaaaatctactttggggatattctcctggggtcaggttg 81715768
Query: 605 caccagcctgcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatc 664
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 81715769 caccagcctgcgttcagttccggttcttgttgtgtatgtttgtttttttttaattgcatc 81715828
Query: 665 caaagggtgctctgaggtcaataaaatagccaaggcc 701
|||||||||||||||||||||||||||||||||||||
Sbjct: 81715829 caaagggtgctctgaggtcaataaaatagccaaggcc 81715865
Score = 278 bits (140), Expect = 4e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 14 gccggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcct 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81655657 gccggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcct 81655598
Query: 74 caccatggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatga 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81655597 caccatggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatga 81655538
Query: 134 ctacatgaagtcaattggtg 153
||||||||||||||||||||
Sbjct: 81655537 ctacatgaagtcaattggtg 81655518
Score = 206 bits (104), Expect = 1e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 322 agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81634401 agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 81634342
Query: 382 agacaacgcttgttcgggaactagttgatgggaaactcatcctg 425
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81634341 agacaacgcttgttcgggaactagttgatgggaaactcatcctg 81634298
Score = 206 bits (104), Expect = 1e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 322 agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81714138 agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 81714197
Query: 382 agacaacgcttgttcgggaactagttgatgggaaactcatcctg 425
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81714198 agacaacgcttgttcgggaactagttgatgggaaactcatcctg 81714241
>Sscrofa_Chr17
|| Length = 69701581
Score = 940 bits (474), Expect = 0.0
Identities = 629/680 (92%), Gaps = 5/680 (0%)
Strand = Plus / Plus
Query: 26 atttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcaccatggtgga 85
|||||||| | |||| | |||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 17683072 atttttgcactcctgctatgtcatctctttctcagcctagcccagcctcaccatggcgga 17683131
Query: 86 cgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgactacatgaagtc 145
| ||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 17683132 caccttcatgggcatctggaagctagtggacagcaagaattttgatgactgcatgaagtc 17683191
Query: 146 aattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctaccacaatcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 17683192 aattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctaccacagtcat 17683251
Query: 206 cgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagagcacagagat 265
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 17683252 cgaagtgaatggggacacaatcaccataaaaacacaaagcaccttcaagagcgcagagat 17683311
Query: 266 cagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaaggtcaagtc 325
|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 17683312 cagcttcaagctgggattgaagtttgatgagacaacagcagatgataggaaggtcaagtc 17683371
Query: 326 cattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaagagac 385
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 17683372 cattgtgacactggatggaagcaaacttgtccacgtgcagaagtggaatggacaagagac 17683431
Query: 386 aacgcttgttcgggaactagttgatgggaaactcatcctgacactcacccatggcagtgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17683432 aacgcttgttcgggaactagttgatgggaaactcatcctgacactcacccacggcagtgc 17683491
Query: 446 agtttgcactcgcacttacgagaaagaggcatgacctgcccatcccttc---gactgttc 502
|||||||||| ||| ||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct: 17683492 agtttgcacttgcatttatgagaaagaggcatgacctgcccatcccttcattgactgctc 17683551
Query: 503 ctgccaattggctactcctggactcagcaccagattgcctc-attttttcctctggcatt 561
|| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 17683552 cttccaattggctactcctggactcagcaccagattgcctcgtttttttcctgtggcatt 17683611
Query: 562 ttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcctgcgttcag 621
||||||||||| |||||||||||||||||||||||||| || |||||||||||| | ||
Sbjct: 17683612 ttgtaaaaatccactttggggatattctcctggggtcacgtggcaccagcctgcatatag 17683671
Query: 622 ttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtgctctgagg 681
||||||||||||||||||||||||| || |||||||||||| ||| ||||||
Sbjct: 17683672 ttccggttcttgttgtgtatgtttg-ttttttttaactgcatccaaaggatgcgctgagg 17683730
Query: 682 tcaataaaatagccaaggcc 701
||||||||| ||||||||||
Sbjct: 17683731 tcaataaaacagccaaggcc 17683750
>Sscrofa_Chr13
|| Length = 218635234
Score = 829 bits (418), Expect = 0.0
Identities = 621/688 (90%), Gaps = 5/688 (0%)
Strand = Plus / Minus
Query: 17 ggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcac 76
||||| ||||||||||| ||||||||| || ||||||||||||| |||||||||| |||
Sbjct: 36997301 ggtcccggaatttttgcatgcctgttctatcatctctttctcagcatagcccagccccac 36997242
Query: 77 catggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgacta 136
||||| ||||||||| |||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 36997241 catggcagacgccttcatgggcacctggaagctactagacagcaagaatttccatgacta 36997182
Query: 137 catgaagtcaattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctac 196
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 36997181 catgaagtcaattgttgtgggttttgccaccaggcaggtgaccaacatgaccaagcctac 36997122
Query: 197 cacaatcatcgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagag 256
|||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 36997121 cacaattatcaaagtgaatggggacacaattaccataaaaacacaaagcaccttcaagag 36997062
Query: 257 cacagagatcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaa 316
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 36997061 cacagagatcagct-caagcatggagtggagtttgatgagacaacagcagatgacaggaa 36997003
Query: 317 ggtcaagtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatgg 376
||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||
Sbjct: 36997002 ggtcaagtctattgtgacaatggatggaggcaaacatgtccatgtgcagaagtggaatgg 36996943
Query: 377 acaagagacaacgcttgttcgggaactagttgatgggaaactcatcctgacactcaccca 436
|| ||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||
Sbjct: 36996942 gtaaaagacaacacttgtttgggaactagctgatgggaaactcatcctgacattcaccca 36996883
Query: 437 tggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgcccatcccttcga 496
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 36996882 aagcagtgcagtttgcactcgcacttacgagaaaggagcatgacctgcccatcccttctt 36996823
Query: 497 c---tgttcctgccaattggctactcctggactcagcaccagattgcctcattttttcct 553
| || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 36996822 cagctgctcctgccaactggctactcctggactcagcaccagattgcctcatttcttcct 36996763
Query: 554 ctggcattttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcct 613
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |
Sbjct: 36996762 ctggcattttgtaaaaatccactttggggatattctcctggagtcaggtggcaccagtcc 36996703
Query: 614 gcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtg 673
|| | ||||| |||||||||||| |||||||| || |||||||||||||||
Sbjct: 36996702 gcctatagttctggttcttgttgtatatgtttg-ttgtttttaactgcatccaaagggtg 36996644
Query: 674 ctctgaggtcaataaaatagccaaggcc 701
||||||||||||||||||||||||||||
Sbjct: 36996643 ctctgaggtcaataaaatagccaaggcc 36996616
>Sscrofa_Chr10
|| Length = 79102373
Score = 757 bits (382), Expect = 0.0
Identities = 613/689 (88%), Gaps = 18/689 (2%)
Strand = Plus / Minus
Query: 19 tcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcacca 78
||||||||| ||||| |||||| ||||| | |||||||||||||||||||| ||||||||
Sbjct: 29949283 tcctggaatctttgcacgcctgctctgttgcctctttctcagcctagcccaacctcacca 29949224
Query: 79 tggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgactaca 138
||||||| ||||| |||||||| |||||||||| ||||| ||||||||||
Sbjct: 29949223 tggtggatgcctt-----------ggaagctaatggacagcaaaaattttgatgactaca 29949175
Query: 139 tgaagtcaattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctacca 198
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 29949174 tgaagtcaattggtgtgggttttgccaccaggcaggtggccaacacgaccaagccttcca 29949115
Query: 199 caatcatcgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagagca 258
|||||||| ||||||| ||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct: 29949114 caatcatcaaagtgaacggggacacaatcaccatacaaacacaaaacaccttcaagagca 29949055
Query: 259 cagagatcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaagg 318
| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 29949054 cccagatcagcttcaagctgggactggagtttgatgagaccacagcggatgacaggaagg 29948995
Query: 319 tcaagtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggac 378
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 29948994 tcaagtccattgtgacactggatggaggcaaacttgtccccgtgcagaagtggaatggac 29948935
Query: 379 aagagacaac-gcttgttcgggaactagttgatgggaaactca-tcctgacactcaccca 436
|||||||||| |||||| ||||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 29948934 aagagacaacaccttgtttgggaactaggtgatgggacactcattcctgacactcaccca 29948875
Query: 437 tggcagtgcagtttgcactcgcacttacgagaaagaggcatgacctgcccatccct---t 493
|||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||| |
Sbjct: 29948874 tggcggtgcagtttgcactggcacttatgagaaagaagcatgacctgcccatcccttcat 29948815
Query: 494 cgactgttcctgccaattggctactcctgg-actcagcaccagattgcctcattttttcc 552
| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 29948814 caactgctcctgccaattggctactcctggaactcagcaccagattgcctcatttttacc 29948755
Query: 553 tctggcattttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcc 612
||| ||| |||||||||||| | | ||| |||||||||||||||||||| |||||||||
Sbjct: 29948754 tctagca-tttgtaaaaatccattctggccatattctcctggggtcaggtggcaccagcc 29948696
Query: 613 tgcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggt 672
||| | ||||| ||||||| |||||||||||| || ||||||||||||||
Sbjct: 29948695 tgcatatggttccagttcttggtgtgtatgtttggttttttttaactgcatccaaagggt 29948636
Query: 673 gctctgaggtcaataaaatagccaaggcc 701
|||||||||||||||||||||||||||||
Sbjct: 29948635 gctctgaggtcaataaaatagccaaggcc 29948607
>Sscrofa_Chr04
|| Length = 143465943
Score = 454 bits (229), Expect = e-125
Identities = 334/367 (91%), Gaps = 4/367 (1%)
Strand = Plus / Minus
Query: 24 gaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcaccatggtg 83
|||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 89188005 gaatttttgcacgcctgctctgtcgtctctttctcagcctagtccagcctcaccatggcg 89187946
Query: 84 gacgccttcgcgggcacctggaagctagtg--gacagcaagaatttcgatgactacatga 141
|| |||||| |||||||||||||||||| | ||| ||||||||| ||||||||||||
Sbjct: 89187945 gatgccttcatgggcacctggaagctagtcctgccagtaagaatttcaatgactacatga 89187886
Query: 142 agtcaattggtgtgggttttgccaccaggcaggtggccaacatgaccaagcctaccacaa 201
| || |||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct: 89187885 aatcgattggtgtgggttttgcccacaccaatttggccaacatgaccaagcctaccacaa 89187826
Query: 202 tcatcgaagtgaatggggacacaatcatcataaaaacacaaagcaccttcaagagcacag 261
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct: 89187825 tcatcgaagtgaatggggacacaatcgccataaaaacacaaggcaccttcaagagca--g 89187768
Query: 262 agatcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaaggtca 321
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 89187767 agatcggcttcaagctgggagtggaatttgatgagacaacagcagatgacaggaaggtca 89187708
Query: 322 agtccattgtgacactggatggaggcaaacttgtccacctgcagaagtggaatggacaag 381
|| ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct: 89187707 agcccattgtgacactggatggaggcaaacttgtccccgtgcaaaagtggaatggacaag 89187648
Query: 382 agacaac 388
|||||||
Sbjct: 89187647 agacaac 89187641
Score = 341 bits (172), Expect = 3e-91
Identities = 279/314 (88%), Gaps = 6/314 (1%)
Strand = Plus / Minus
Query: 391 ttgttcgggaactagttgatgggaaactcatcctgacactcacccatggcagtgcagttt 450
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 89187610 ttgtttgggaactagttgatgggaaactcatcctgacactcacccacggcagtgcagttt 89187551
Query: 451 gcactcgcacttacgagaaagaggcatgacctgcccatcccttc---gactgttcctgcc 507
| |||||| |||| |||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 89187550 gtactcgctcttatgagaaagaggcac-acctgcccatcccttcattgactgctcctgcc 89187492
Query: 508 aattggctactcctggactcagcaccagattgcctcattttttcctctggcattttgtaa 567
||||||||| ||||||||||||||||||| ||||||| || |||||||||| ||||||||
Sbjct: 89187491 aattggctaatcctggactcagcaccagactgcctcacttcttcctctggcgttttgtaa 89187432
Query: 568 aaatctactttggggatattctcctggggtcaggttgcaccagcctgcgttcagttccgg 627
||||| ||||||||||||||||||||||||||||| |||||||||| | | ||||| ||
Sbjct: 89187431 aaatccactttggggatattctcctggggtcaggtggcaccagccttcatatagttctgg 89187372
Query: 628 ttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtgctctgaggtcaata 687
||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct: 89187371 ttcttgttgtgtatgcttg--tttttttaactgcatccaaagggtgctctgaggtcaata 89187314
Query: 688 aaatagccaaggcc 701
|||||| |||||||
Sbjct: 89187313 aaatagtcaaggcc 89187300
>gb|GL896536.1| Sus scrofa unplaced genomic scaffold chrU_scaffold867
Length = 9183
Score = 222 bits (112), Expect = 2e-55
Identities = 184/208 (88%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 495 gactgttcctgccaattggctactcctggactcagcaccagattgcctcatttttt-cct 553
||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 3698 gactgctccttccaattggctactcctggactcagcaccagattgcctcgtttttttcct 3757
Query: 554 ctggcattttgtaaaaatctactttggggatattctcctggggtcaggttgcaccagcct 613
|||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct: 3758 gtggcattttgtaaaaatccactttggggatattctcctggggtcacgtggcaccagcct 3817
Query: 614 gcgttcagttccggttcttgttgtgtatgtttgnnnnnnnnnaattgcatccaaagggtg 673
|| | ||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct: 3818 gcatatagttccggttcttgttgtgtatgtttg-ttttttttaactgcatccaaaggatg 3876
Query: 674 ctctgaggtcaataaaatagccaaggcc 701
| ||||||||||||||| ||||||||||
Sbjct: 3877 cgctgaggtcaataaaacagccaaggcc 3904
Score = 200 bits (101), Expect = 8e-49
Identities = 134/145 (92%)
Strand = Plus / Plus
Query: 17 ggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcac 76
||||||||||||||||| | |||| | |||| ||||||||||||||||||||||||||||
Sbjct: 3247 ggtcctggaatttttgcactcctgctatgtcatctctttctcagcctagcccagcctcac 3306
Query: 77 catggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatgacta 136
||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3307 catggcggacaccttcatgggcacctggaagctagtggacagcaagaattttgatgactg 3366
Query: 137 catgaagtcaattggtgtgggtttt 161
|||||||||||||||||||||||||
Sbjct: 3367 catgaagtcaattggtgtgggtttt 3391
Score = 168 bits (85), Expect = 3e-39
Identities = 97/101 (96%)
Strand = Plus / Plus
Query: 259 cagagatcagcttcaagctgggagtggagtttgatgagacaacagcagatgacaggaagg 318
||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct: 3493 cagagatcagcttcaagctgggattgaagtttgatgagacaacagcagatgataggaagg 3552
Query: 319 tcaagtccattgtgacactggatggaggcaaacttgtccac 359
|||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3553 tcaagtccattgtgacactggatggaagcaaacttgtccac 3593
>Sscrofa_Chr05
|| Length = 111506441
Score = 89.7 bits (45), Expect = 2e-15
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 17 ggtcctggaatttttgcgcgcctgttctgtcgtctctttctcagcctagcccagcctcac 76
||||| ||||||| ||| | |||| |||||||||||||||| | |||||||||||||||
Sbjct: 12969740 ggtcccggaatttctgcacacctgctctgtcgtctctttctaaacctagcccagcctcat 12969681
Query: 77 catggtggacgccttcgcgggcacctggaagctagtggacagcaagaatttcgatga 133
||||| || ||||||| |||||| ||| |||| ||||||||||||||||||||
Sbjct: 12969680 catggcagatgccttcgtgggcacttggtcactagcagacagcaagaatttcgatga 12969624
>Sscrofa_Chr02
|| Length = 162569375
Score = 69.9 bits (35), Expect = 2e-09
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 659 tgcatccaaagggtgctctgaggtcaataaaatagccaaggcc 701
||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 153896009 tgcatccgaagggtgctctgaggtcaataaaacagccaaggcc 153896051
Score = 67.9 bits (34), Expect = 7e-09
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 585 attctcctggggtcaggttgcaccagcctgcgttcagttccggttcttgttgtgtatgtt 644
|||||| ||||| ||||| |||||||||||||| |||||| ||||||| |||||||||||
Sbjct: 153895920 attctcttgggg-caggtggcaccagcctgcgtacagttctggttcttattgtgtatgtt 153895978
Query: 645 tg 646
||
Sbjct: 153895979 tg 153895980
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,267,492
Number of extensions: 443
Number of successful extensions: 443
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 27
Length of query: 735
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 714
Effective length of database: 2,808,413,156
Effective search space: 2005206993384
Effective search space used: 2005206993384
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)