Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008123
(736 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029972.1| elongin B [Bos taurus]. 236 1e-62
Alignment gi|XP_002695495.1| PREDICTED: elongin B-like [Bos taurus]. 234 7e-62
Alignment gi|XP_609413.1| PREDICTED: elongin B [Bos taurus]. 234 7e-62
Alignment gi|XP_002698120.1| PREDICTED: elongin B-like [Bos taurus]. 204 5e-53
Alignment gi|XP_607260.2| PREDICTED: elongin B [Bos taurus]. 202 2e-52
>ref|NP_001029972.1| elongin B [Bos taurus].
Length = 118
Score = 236 bits (602), Expect = 1e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 118
>ref|XP_002695495.1| PREDICTED: elongin B-like [Bos taurus].
Length = 118
Score = 234 bits (596), Expect = 7e-62
Identities = 117/118 (99%), Positives = 117/118 (99%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKE STVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKELSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 118
>ref|XP_609413.1| PREDICTED: elongin B [Bos taurus].
Length = 118
Score = 234 bits (596), Expect = 7e-62
Identities = 117/118 (99%), Positives = 117/118 (99%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKE STVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKELSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 118
>ref|XP_002698120.1| PREDICTED: elongin B-like [Bos taurus].
Length = 118
Score = 204 bits (520), Expect = 5e-53
Identities = 101/118 (85%), Positives = 109/118 (92%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRR KTTIFT+AKESSTVFELKR+++GILKRPPDEQRLYKD+QLLDD +TLGEC
Sbjct: 1 MDVFLMIRRGKTTIFTEAKESSTVFELKRVIQGILKRPPDEQRLYKDNQLLDDSRTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTA PQAP TVGLAFR DEAFE + IEPFSSPPELPDVMKP+DSGS AN QAVQ
Sbjct: 61 GFTSQTALPQAPVTVGLAFREDEAFEDVCIEPFSSPPELPDVMKPRDSGSRANGQAVQ 118
>ref|XP_607260.2| PREDICTED: elongin B [Bos taurus].
Length = 118
Score = 202 bits (515), Expect = 2e-52
Identities = 100/118 (84%), Positives = 108/118 (91%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRR KTTIFT+AKESSTVFELKR+++GILKRPPDEQRLYKD+QLLDD +TLGEC
Sbjct: 1 MDVFLMIRRGKTTIFTEAKESSTVFELKRVIQGILKRPPDEQRLYKDNQLLDDSRTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFT QTA PQAP TVGLAFR DEAFE + IEPFSSPPELPDVMKP+DSGS AN QAVQ
Sbjct: 61 GFTRQTALPQAPVTVGLAFREDEAFEDVCIEPFSSPPELPDVMKPRDSGSRANGQAVQ 118
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,589,650
Number of extensions: 839521
Number of successful extensions: 3289
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3278
Number of HSP's successfully gapped: 5
Length of query: 245
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 146
Effective length of database: 14,405,662
Effective search space: 2103226652
Effective search space used: 2103226652
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008123
(736 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536998.1| PREDICTED: similar to transcription elongation ... 226 1e-59
Alignment gi|XP_864654.1| PREDICTED: similar to transcription elongation ... 221 7e-58
>ref|XP_536998.1| PREDICTED: similar to transcription elongation factor B (SIII),
polypeptide 2 isoform 1 [Canis familiaris].
Length = 113
Score = 226 bits (577), Expect = 1e-59
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = +2
Query: 71 MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQ 250
MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQ
Sbjct: 1 MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQ 60
Query: 251 TARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
TARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 TARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 113
>ref|XP_864654.1| PREDICTED: similar to transcription elongation factor B (SIII),
polypeptide 2 isoform 3 [Canis familiaris].
Length = 114
Score = 221 bits (562), Expect = 7e-58
Identities = 112/114 (98%), Positives = 113/114 (99%), Gaps = 1/114 (0%)
Frame = +2
Query: 71 MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQ 250
MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQ
Sbjct: 1 MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQ 60
Query: 251 TARPQAPATVGLAFRAD-EAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
TARPQAPATVGLAFR+D EAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 TARPQAPATVGLAFRSDGEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 114
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,959,570
Number of extensions: 875549
Number of successful extensions: 3516
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3505
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 145
Effective length of database: 15,540,904
Effective search space: 2253431080
Effective search space used: 2253431080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008123
(736 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124795.1| PREDICTED: transcription elongation factor B... 236 1e-62
Alignment gi|XP_003354690.1| PREDICTED: transcription elongation factor B... 236 1e-62
Alignment gi|XP_003354689.1| PREDICTED: transcription elongation factor B... 236 1e-62
Alignment gi|XP_003124794.1| PREDICTED: transcription elongation factor B... 236 1e-62
>ref|XP_003124795.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 2 [Sus scrofa].
Length = 118
Score = 236 bits (602), Expect = 1e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 118
>ref|XP_003354690.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Sus scrofa].
Length = 118
Score = 236 bits (602), Expect = 1e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 118
>ref|XP_003354689.1| PREDICTED: transcription elongation factor B polypeptide 2-like
[Sus scrofa].
Length = 118
Score = 236 bits (602), Expect = 1e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 118
>ref|XP_003124794.1| PREDICTED: transcription elongation factor B polypeptide 2-like
isoform 1 [Sus scrofa].
Length = 118
Score = 236 bits (602), Expect = 1e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 118
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,890,681
Number of extensions: 546593
Number of successful extensions: 2262
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2247
Number of HSP's successfully gapped: 4
Length of query: 245
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,953,820
Effective search space: 1334119180
Effective search space used: 1334119180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008123
(736 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080581.1| transcription elongation factor B polypeptide 2... 230 7e-61
>ref|NP_080581.1| transcription elongation factor B polypeptide 2 [Mus musculus].
Length = 118
Score = 230 bits (587), Expect = 7e-61
Identities = 114/118 (96%), Positives = 116/118 (98%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPP+EQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRAD+ FEALRIEPFSSPPELPDVMKPQDSG SANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADDTFEALRIEPFSSPPELPDVMKPQDSGGSANEQAVQ 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,493,846
Number of extensions: 682376
Number of successful extensions: 2645
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2633
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 146
Effective length of database: 12,643,995
Effective search space: 1846023270
Effective search space used: 1846023270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008123
(736 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009039.1| transcription elongation factor B polypeptide 2... 230 9e-61
Alignment gi|NP_996896.1| transcription elongation factor B polypeptide 2... 228 3e-60
>ref|NP_009039.1| transcription elongation factor B polypeptide 2 isoform a [Homo
sapiens].
Length = 118
Score = 230 bits (587), Expect = 9e-61
Identities = 115/118 (97%), Positives = 116/118 (98%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAVQ 409
GFTSQTARPQAPATVGLAFRAD+ FEAL IEPFSSPPELPDVMKPQDSGSSANEQAVQ
Sbjct: 61 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ 118
>ref|NP_996896.1| transcription elongation factor B polypeptide 2 isoform b [Homo
sapiens].
Length = 161
Score = 228 bits (582), Expect = 3e-60
Identities = 114/117 (97%), Positives = 115/117 (98%)
Frame = +2
Query: 56 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 235
MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC 60
Query: 236 GFTSQTARPQAPATVGLAFRADEAFEALRIEPFSSPPELPDVMKPQDSGSSANEQAV 406
GFTSQTARPQAPATVGLAFRAD+ FEAL IEPFSSPPELPDVMKPQDSGSSANEQAV
Sbjct: 61 GFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAV 117
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,115,698
Number of extensions: 838852
Number of successful extensions: 3196
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3161
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 145
Effective length of database: 15,000,764
Effective search space: 2175110780
Effective search space used: 2175110780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008123
(736 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 521 e-145
Sscrofa_Chr11 182 2e-43
Sscrofa_Chr13 133 1e-28
>Sscrofa_Chr03
|| Length = 144787322
Score = 521 bits (263), Expect = e-145
Identities = 372/421 (88%)
Strand = Plus / Minus
Query: 297 cagatgaagcgttcgaggccctgcgcattgagcccttctccagcccgcctgagctgcccg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40632465 cagatgaagcgttcgaggccctgcgcattgagcccttctccagcccgcctgagctgcccg 40632406
Query: 357 acgtgatgaagccgcaggactcaggaagcagcgccaatgaacaagctgtgcagtgagggt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40632405 acgtgatgaagccgcaggactcaggaagcagcgccaatgaacaagctgtgcagtgagggt 40632346
Query: 417 ctccctgcgcaccccccaataaaagatttgggtgtccacctggnnnnnnnnnnnnnnngc 476
||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 40632345 ctccctgcgcaccccccaataaaagatttgggtgtccacctggttactgcctctttctgc 40632286
Query: 477 acaccctttcctgactcaggcatcaccccaccgccgctgcccgnnnnnnnnnnacnnnnn 536
||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 40632285 acaccctttcctgactcaggcatcaccccaccgccgctgcccgccccccccccgcccccc 40632226
Query: 537 nnnnttccttgccnnngtcacctgctggaccaccncctcgagtcgagctatccatccgaa 596
||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 40632225 cggcttccttgccaggtcaacctgctggaccaccagctcgagtcgagctatccatccgaa 40632166
Query: 597 acccacagcctaccctcctgaaggccatgggaagaaaggaacccaaaacctggggacaaa 656
|||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 40632165 acccacagcctagcctcctgaaggccatgggaagaaaggaacccagagcctggggacaaa 40632106
Query: 657 agctttggggcaccacttcctcccaagcgcccctctcctggcatagtttgatgcaaaacc 716
||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct: 40632105 agctttggggcaccacttcctccgaggcgcccctctcctggcatagtttgatgcagaacc 40632046
Query: 717 a 717
|
Sbjct: 40632045 a 40632045
Score = 272 bits (137), Expect = 3e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 58 ggacgtgttcctcatgatccggcgccacaagaccaccatcttcactgacgctaaggagtc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40635992 ggacgtgttcctcatgatccggcgccacaagaccaccatcttcactgacgctaaggagtc 40635933
Query: 118 gagtaccgtgttcgagctgaagcgcatcgtcgagggcatcctcaagcggccgccggacga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40635932 gagtaccgtgttcgagctgaagcgcatcgtcgagggcatcctcaagcggccgccggacga 40635873
Query: 178 gcagcggctgtacaagg 194
|||||||||||||||||
Sbjct: 40635872 gcagcggctgtacaagg 40635856
Score = 214 bits (108), Expect = 5e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 192 aggacgaccagcttctggatgacggcaagaccttgggcgagtgcggcttcaccagccaga 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40634607 aggacgaccagcttctggatgacggcaagaccttgggcgagtgcggcttcaccagccaga 40634548
Query: 252 ccgcgcggcctcaggccccagccaccgtggggctggccttccgggcag 299
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40634547 ccgcgcggcctcaggccccagccaccgtggggctggccttccgggcag 40634500
Score = 115 bits (58), Expect = 3e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 2 acggggaggagcgcggccgcgccggcgcgtcgagggggagaggtagccgctgcgatgg 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40636173 acggggaggagcgcggccgcgccggcgcgtcgagggggagaggtagccgctgcgatgg 40636116
>Sscrofa_Chr11
|| Length = 87690581
Score = 182 bits (92), Expect = 2e-43
Identities = 167/192 (86%)
Strand = Plus / Plus
Query: 202 gcttctggatgacggcaagaccttgggcgagtgcggcttcaccagccagaccgcgcggcc 261
||||| |||||| ||||||||||||||| || | |||||||||||||| || || ||||
Sbjct: 75924041 gcttcaggatgatggcaagaccttgggcaagggtggcttcaccagccaaacagcatggcc 75924100
Query: 262 tcaggccccagccaccgtggggctggccttccgggcagatgaagcgttcgaggccctgcg 321
||||||||||||||| |||||||| ||||| ||||||||||||| || ||||||||| |
Sbjct: 75924101 tcaggccccagccactgtggggctcaccttctgggcagatgaagcatttgaggccctgtg 75924160
Query: 322 cattgagcccttctccagcccgcctgagctgcccgacgtgatgaagccgcaggactcagg 381
||||||||||||||||||| | |||||||||||| | |||| ||||| |||||||| ||
Sbjct: 75924161 cattgagcccttctccagctcacctgagctgccccatgtgaccaagccacaggactcggg 75924220
Query: 382 aagcagcgccaa 393
|||||| |||||
Sbjct: 75924221 aagcagtgccaa 75924232
Score = 69.9 bits (35), Expect = 2e-09
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 58 ggacgtgttcctcatgatccggcgccacaagaccaccatcttcactgacgctaaggagtc 117
|||||||||| |||||| || | || ||| ||||||| ||||| || || |||||||
Sbjct: 75923918 ggacgtgttcttcatgagcctgtgctgcaaaaccaccaccttcaaggatgccaaggagtt 75923977
Query: 118 gagtaccgtgttcgagctgaagcgcatcgtcgagggcatcctc 160
||| ||| ||||| ||||||||||||| |||||||||||||||
Sbjct: 75923978 gagcaccatgttcaagctgaagcgcattgtcgagggcatcctc 75924020
>Sscrofa_Chr13
|| Length = 218635234
Score = 133 bits (67), Expect = 1e-28
Identities = 182/220 (82%), Gaps = 4/220 (1%)
Strand = Plus / Plus
Query: 194 gacgaccagcttctggatgacggcaagaccttgggcgagtgcggcttcaccagccagacc 253
||||||||||||||||| | |||||| |||||||||| |||||| ||||||||||
Sbjct: 27597193 gacgaccagcttctggaag----caagacactgggcgagtgtggcttcgccagccagaca 27597248
Query: 254 gcgcggcctcaggccccagccaccgtggggctggccttccgggcagatgaagcgttcgag 313
|| | |||||||||| |||| | |||| ||| || | | | || |||||| ||| |||
Sbjct: 27597249 gcacagcctcaggccttagccgcggtggagctcgcttcgcagacaaatgaagagtttgag 27597308
Query: 314 gccctgcgcattgagcccttctccagcccgcctgagctgcccgacgtgatgaagccgcag 373
|| ||| ||| |||||||||||| || | |||||||||||||| || ||||||| ||||
Sbjct: 27597309 gctctgtgcagagagcccttctcccgcacacctgagctgcccgatgtcatgaagctgcag 27597368
Query: 374 gactcaggaagcagcgccaatgaacaagctgtgcagtgag 413
|||||||||||||| |||| ||||||||||||||||||||
Sbjct: 27597369 gactcaggaagcagtgccagtgaacaagctgtgcagtgag 27597408
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 14,429,482
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 9
Length of query: 736
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 715
Effective length of database: 2,808,413,156
Effective search space: 2008015406540
Effective search space used: 2008015406540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)