Animal-Genome cDNA 20110601C-008130


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008130
         (1946 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179229.1| pescadillo homolog [Bos taurus].                  883   0.0  
Alignment   gi|XP_002694683.1| PREDICTED: pescadillo homolog 1, containing ...   619   e-177

>ref|NP_001179229.1| pescadillo homolog [Bos taurus].
          Length = 584

 Score =  883 bits (2281), Expect = 0.0
 Identities = 467/601 (77%), Positives = 483/601 (80%), Gaps = 5/601 (0%)
 Frame = +2

Query: 89   MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 268
            MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA
Sbjct: 1    MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 60

Query: 269  ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 448
            ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV
Sbjct: 61   ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 120

Query: 449  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAAR--AL 622
            KERYPTF+DALRD D       + +   RTGK  +      RR          A+R  A 
Sbjct: 121  KERYPTFVDALRDRDQTTCPRSMLAGLHRTGKGPLQATPPRRRRRPG------ASRRPAP 174

Query: 623  RKVFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRL 802
             +VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRL
Sbjct: 175  PQVFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRL 234

Query: 803  YQSLNLHYPPKLEGQAHTEAKASEDTYALDXXXXXXXXXXXXXXXXRVVVPTEEE-AEVD 979
            YQSLNLHYPPKLE Q HTEAK SED YAL+                RVVVPTEEE AE D
Sbjct: 235  YQSLNLHYPPKLESQVHTEAKTSEDAYALNSESSLEKLAALSASLARVVVPTEEEEAEAD 294

Query: 980  EFPADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDK 1159
            EFPADGEMAAQEED RKELEAQEKHKKLFEGL+FFLNREVPREALAFVIRSFGG+VSWDK
Sbjct: 295  EFPADGEMAAQEEDRRKELEAQEKHKKLFEGLRFFLNREVPREALAFVIRSFGGIVSWDK 354

Query: 1160 SLCIGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQ 1339
            SLCIGATYDVTD SITHQIVDRPGQQTP IGRYYVQPQWVFDSVNA+LLLPV+DYFPGVQ
Sbjct: 355  SLCIGATYDVTDPSITHQIVDRPGQQTPVIGRYYVQPQWVFDSVNAQLLLPVADYFPGVQ 414

Query: 1340 LPPHLSPFVSEKEGDYVPPEKLKLLALQRGEHPGXXXXXXXXXXXXXXXXXXXXXXXXXX 1519
            LPPHLSPFV+EKEGDYVPPEKLKLLALQRGEH G                          
Sbjct: 415  LPPHLSPFVTEKEGDYVPPEKLKLLALQRGEHAGNLNESEEEDEEEDDGDGEEEGEKEEE 474

Query: 1520 XXXXXXXXXXXXXXXXXXXXXXGRVQAPPTAPEEPRMEGK--KPRVMAGTVKLEDRQRLA 1693
                                     +A  TA EE R+EGK  KPRVMAGTVKLED+QRLA
Sbjct: 475  EEDMEADSEK-------------EEEARLTALEERRLEGKTEKPRVMAGTVKLEDKQRLA 521

Query: 1694 QEEESEAKRLAIMMMKKREKYLYNKIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKA 1873
            QEEESEAKRLAIMMMKKREKYLYNKIMFGK+RKIREANKLAEKRKAHDEAVRSEKKAKK 
Sbjct: 522  QEEESEAKRLAIMMMKKREKYLYNKIMFGKKRKIREANKLAEKRKAHDEAVRSEKKAKKV 581

Query: 1874 R 1876
            R
Sbjct: 582  R 582


>ref|XP_002694683.1| PREDICTED: pescadillo homolog 1, containing BRCT domain (zebrafish)
            [Bos taurus].
          Length = 599

 Score =  619 bits (1597), Expect = e-177
 Identities = 325/420 (77%), Positives = 336/420 (80%), Gaps = 3/420 (0%)
 Frame = +2

Query: 626  KVFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLY 805
            +VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLY
Sbjct: 191  QVFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLY 250

Query: 806  QSLNLHYPPKLEGQAHTEAKASEDTYALDXXXXXXXXXXXXXXXXRVVVPTEEE-AEVDE 982
            QSLNLHYPPKLE Q HTEAK SED YAL+                RVVVPTEEE AE DE
Sbjct: 251  QSLNLHYPPKLESQVHTEAKTSEDAYALNSESSLEKLAALSASLARVVVPTEEEEAEADE 310

Query: 983  FPADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDKS 1162
            FPADGEMAAQEED RKELEAQEKHKKLFEGL+FFLNREVPREALAFVIRSFGG+VSWDKS
Sbjct: 311  FPADGEMAAQEEDRRKELEAQEKHKKLFEGLRFFLNREVPREALAFVIRSFGGIVSWDKS 370

Query: 1163 LCIGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQL 1342
            LCIGATYDVTD SITHQIVDRPGQQTP IGRYYVQPQWVFDSVNA+LLLPV+DYFPGVQL
Sbjct: 371  LCIGATYDVTDPSITHQIVDRPGQQTPVIGRYYVQPQWVFDSVNAQLLLPVADYFPGVQL 430

Query: 1343 PPHLSPFVSEKEGDYVPPEKLKLLALQRGEHPGXXXXXXXXXXXXXXXXXXXXXXXXXXX 1522
            PPHLSPFV+EKEGDYVPPEKLKLLALQRGEH G                           
Sbjct: 431  PPHLSPFVTEKEGDYVPPEKLKLLALQRGEHAGNLNESEEEDEEEDDGDGEEEGEKEEEE 490

Query: 1523 XXXXXXXXXXXXXXXXXXXXXGRVQAPPTAPEEPRMEGK--KPRVMAGTVKLEDRQRLAQ 1696
                                    +A  TA EE R+EGK  KPRVMAGTVKLED+QRLAQ
Sbjct: 491  EDMEADSEK-------------EEEARLTALEERRLEGKTEKPRVMAGTVKLEDKQRLAQ 537

Query: 1697 EEESEAKRLAIMMMKKREKYLYNKIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKAR 1876
            EEESEAKRLAIMMMKKREKYLYNKIMFGK+RKIREANKLAEKRKAHDEAVRSEKKAKK R
Sbjct: 538  EEESEAKRLAIMMMKKREKYLYNKIMFGKKRKIREANKLAEKRKAHDEAVRSEKKAKKVR 597



 Score =  253 bits (646), Expect = 4e-67
 Identities = 123/123 (100%), Positives = 123/123 (100%)
 Frame = +2

Query: 89  MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 268
           MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA
Sbjct: 1   MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 60

Query: 269 ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 448
           ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV
Sbjct: 61  ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 120

Query: 449 KER 457
           KER
Sbjct: 121 KER 123


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,119,059
Number of extensions: 2087803
Number of successful extensions: 10696
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10566
Number of HSP's successfully gapped: 5
Length of query: 648
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 539
Effective length of database: 14,074,782
Effective search space: 7586307498
Effective search space used: 7586307498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008130
         (1946 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_543480.2| PREDICTED: similar to pescadillo homolog 1, con...   979   0.0  
Alignment   gi|XP_539950.2| PREDICTED: similar to Pescadillo homolog 1 [Can...   256   4e-68
Alignment   gi|XP_549150.2| PREDICTED: similar to Pescadillo homolog 1 [Can...   150   4e-36

>ref|XP_543480.2| PREDICTED: similar to pescadillo homolog 1, containing BRCT domain
            [Canis familiaris].
          Length = 584

 Score =  979 bits (2530), Expect = 0.0
 Identities = 496/598 (82%), Positives = 509/598 (85%)
 Frame = +2

Query: 89   MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 268
            MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA
Sbjct: 1    MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 60

Query: 269  ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 448
            ARTFYL+KDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV
Sbjct: 61   ARTFYLLKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 120

Query: 449  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRK 628
            KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHV TIQLCRRL VEF+HYVIAARALRK
Sbjct: 121  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVQTIQLCRRLTVEFLHYVIAARALRK 180

Query: 629  VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 808
            VFLSIKGIYYQAEVLGQPIVWITPY FSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ
Sbjct: 181  VFLSIKGIYYQAEVLGQPIVWITPYAFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 240

Query: 809  SLNLHYPPKLEGQAHTEAKASEDTYALDXXXXXXXXXXXXXXXXRVVVPTEEEAEVDEFP 988
             LNLHYPPKLE QA TEAK SEDTYALD                R+VVP EEEAE+DEFP
Sbjct: 241  LLNLHYPPKLESQAQTEAKTSEDTYALDSESSMEKLAALGASLVRMVVPVEEEAEMDEFP 300

Query: 989  ADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDKSLC 1168
            ADGEM  QEED RKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGG VSWDKSLC
Sbjct: 301  ADGEMTVQEEDRRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGDVSWDKSLC 360

Query: 1169 IGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQLPP 1348
            IGATYDVTDS +THQIVDRPGQQTP +GRYYVQPQWVFD VNARLLLPV+DYFPGVQLPP
Sbjct: 361  IGATYDVTDSCVTHQIVDRPGQQTPVLGRYYVQPQWVFDCVNARLLLPVADYFPGVQLPP 420

Query: 1349 HLSPFVSEKEGDYVPPEKLKLLALQRGEHPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1528
            HLSPFVSEKEGDY+PPEKLKLLALQRGEHPG                             
Sbjct: 421  HLSPFVSEKEGDYIPPEKLKLLALQRGEHPGNTDESEEEDEEGDDGDEGGENEEEEEEDA 480

Query: 1529 XXXXXXXXXXXXXXXXXXXGRVQAPPTAPEEPRMEGKKPRVMAGTVKLEDRQRLAQEEES 1708
                                  +A  TA EE RME KKPRVMAGTVKL+D+QRLAQEEE+
Sbjct: 481  EAGSEK--------------EEEAHLTALEEQRMEEKKPRVMAGTVKLQDKQRLAQEEEN 526

Query: 1709 EAKRLAIMMMKKREKYLYNKIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKARPV 1882
            EAKRLAIMMMKKREKYLYNKIMFGKRRKIREA KLAEKRKAHDEAVRS+KKAKK RPV
Sbjct: 527  EAKRLAIMMMKKREKYLYNKIMFGKRRKIREAKKLAEKRKAHDEAVRSQKKAKKIRPV 584


>ref|XP_539950.2| PREDICTED: similar to Pescadillo homolog 1 [Canis familiaris].
          Length = 171

 Score =  256 bits (655), Expect = 4e-68
 Identities = 128/141 (90%), Positives = 133/141 (94%)
 Frame = +2

Query: 89  MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 268
           MGGLEKK YERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPK +KKVNKGSTA
Sbjct: 1   MGGLEKK-YERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPK-QKKVNKGSTA 58

Query: 269 ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 448
             TFYL+K IKFLLHEP+VNKFR+YKVFVRKL+KAYGKSEWNTVE L DNKPNYKLDHIV
Sbjct: 59  TGTFYLLKHIKFLLHEPVVNKFRKYKVFVRKLQKAYGKSEWNTVEHLNDNKPNYKLDHIV 118

Query: 449 KERYPTFIDALRDLDDALSMC 511
           KERYPTF DALRDLDDALSMC
Sbjct: 119 KERYPTFRDALRDLDDALSMC 139


>ref|XP_549150.2| PREDICTED: similar to Pescadillo homolog 1 [Canis familiaris].
          Length = 225

 Score =  150 bits (379), Expect = 4e-36
 Identities = 76/82 (92%), Positives = 80/82 (97%)
 Frame = +2

Query: 1637 KKPRVMAGTVKLEDRQRLAQEEESEAKRLAIMMMKKREKYLYNKIMFGKRRKIREANKLA 1816
            KKPRVMAGTVKL+D+QRLAQEEE+EAKRLAIMMMKKREKYLYNKIMFGKR KIREANKLA
Sbjct: 144  KKPRVMAGTVKLQDKQRLAQEEENEAKRLAIMMMKKREKYLYNKIMFGKRCKIREANKLA 203

Query: 1817 EKRKAHDEAVRSEKKAKKARPV 1882
            EKRKAHDEAVRS+KKAKK RPV
Sbjct: 204  EKRKAHDEAVRSQKKAKKIRPV 225


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,483,067
Number of extensions: 2156965
Number of successful extensions: 10889
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10692
Number of HSP's successfully gapped: 4
Length of query: 648
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 539
Effective length of database: 15,240,880
Effective search space: 8214834320
Effective search space used: 8214834320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008130
         (1946 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003133016.2| PREDICTED: pescadillo homolog isoform 2, par...  1006   0.0  
Alignment   gi|XP_003361656.1| PREDICTED: pescadillo homolog, partial [Sus ...   858   0.0  

>ref|XP_003133016.2| PREDICTED: pescadillo homolog isoform 2, partial [Sus scrofa].
          Length = 571

 Score = 1006 bits (2601), Expect = 0.0
 Identities = 507/571 (88%), Positives = 507/571 (88%)
 Frame = +2

Query: 89   MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 268
            MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA
Sbjct: 1    MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 60

Query: 269  ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 448
            ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV
Sbjct: 61   ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 120

Query: 449  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRK 628
            KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRK
Sbjct: 121  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRK 180

Query: 629  VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 808
            VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ
Sbjct: 181  VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 240

Query: 809  SLNLHYPPKLEGQAHTEAKASEDTYALDXXXXXXXXXXXXXXXXRVVVPTEEEAEVDEFP 988
            SLNLHYPPKLEGQAHTEAKASEDTYALD                RVVVPTEEEAEVDEFP
Sbjct: 241  SLNLHYPPKLEGQAHTEAKASEDTYALDSESSMEKLAALSASLARVVVPTEEEAEVDEFP 300

Query: 989  ADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDKSLC 1168
            ADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDKSLC
Sbjct: 301  ADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDKSLC 360

Query: 1169 IGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQLPP 1348
            IGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQLPP
Sbjct: 361  IGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQLPP 420

Query: 1349 HLSPFVSEKEGDYVPPEKLKLLALQRGEHPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1528
            HLSPFVSEKEGDYVPPEKLKLLALQRGEHPG                             
Sbjct: 421  HLSPFVSEKEGDYVPPEKLKLLALQRGEHPGNLNESEQEDEEEDNEGDDEEGEKEEDIEA 480

Query: 1529 XXXXXXXXXXXXXXXXXXXGRVQAPPTAPEEPRMEGKKPRVMAGTVKLEDRQRLAQEEES 1708
                               GRVQAPPTAPEEPRMEGKKPRVMAGTVKLEDRQRLAQEEES
Sbjct: 481  GSEEEEEARLTALEERRMEGRVQAPPTAPEEPRMEGKKPRVMAGTVKLEDRQRLAQEEES 540

Query: 1709 EAKRLAIMMMKKREKYLYNKIMFGKRRKIRE 1801
            EAKRLAIMMMKKREKYLYNKIMFGKRRKIRE
Sbjct: 541  EAKRLAIMMMKKREKYLYNKIMFGKRRKIRE 571


>ref|XP_003361656.1| PREDICTED: pescadillo homolog, partial [Sus scrofa].
          Length = 523

 Score =  858 bits (2216), Expect = 0.0
 Identities = 425/453 (93%), Positives = 426/453 (94%), Gaps = 4/453 (0%)
 Frame = +2

Query: 95   GLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTAAR 274
            GLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTAAR
Sbjct: 1    GLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTAAR 60

Query: 275  TFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIVKE 454
            TFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIVKE
Sbjct: 61   TFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIVKE 120

Query: 455  RYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRKVF 634
            RYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRKVF
Sbjct: 121  RYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRKVF 180

Query: 635  LSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQSL 814
            LSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQSL
Sbjct: 181  LSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQSL 240

Query: 815  NLHYPPKLEGQAHTEAKASEDTYALDXXXXXXXXXXXXXXXXRVVVPTEEEAEVDEFPAD 994
            NLHYPPKLEGQAHTEAKASEDTYALD                RVVVPTEEEAEVDEFPAD
Sbjct: 241  NLHYPPKLEGQAHTEAKASEDTYALDSESSMEKLAALSASLARVVVPTEEEAEVDEFPAD 300

Query: 995  GEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALA----FVIRSFGGLVSWDKS 1162
            G   A  +DHRKELEAQEKHKKLFEGLKFFLNREVPREALA    F  RSFGGLVSWDKS
Sbjct: 301  GVRTALPDDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFGFLFASRSFGGLVSWDKS 360

Query: 1163 LCIGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQL 1342
            LCIGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQL
Sbjct: 361  LCIGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQL 420

Query: 1343 PPHLSPFVSEKEGDYVPPEKLKLLALQRGEHPG 1441
            PPHLSPFVSEKEGDYVPPEKLKLLALQRGEHPG
Sbjct: 421  PPHLSPFVSEKEGDYVPPEKLKLLALQRGEHPG 453



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 28/29 (96%), Positives = 28/29 (96%)
 Frame = +2

Query: 1796 REANKLAEKRKAHDEAVRSEKKAKKARPV 1882
            R ANKLAEKRKAHDEAVRSEKKAKKARPV
Sbjct: 495  RPANKLAEKRKAHDEAVRSEKKAKKARPV 523


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,614,683
Number of extensions: 1348018
Number of successful extensions: 6670
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6603
Number of HSP's successfully gapped: 4
Length of query: 648
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 543
Effective length of database: 8,729,747
Effective search space: 4740252621
Effective search space used: 4740252621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008130
         (1946 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075027.1| pescadillo homolog [Mus musculus].                   830   0.0  

>ref|NP_075027.1| pescadillo homolog [Mus musculus].
          Length = 584

 Score =  830 bits (2145), Expect = 0.0
 Identities = 430/598 (71%), Positives = 455/598 (76%)
 Frame = +2

Query: 89   MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 268
            MGGLEKKKYERGSATNYITRNKARKKLQLSL DFRRLCILKGIYPHEPKHKKKVNKGSTA
Sbjct: 1    MGGLEKKKYERGSATNYITRNKARKKLQLSLPDFRRLCILKGIYPHEPKHKKKVNKGSTA 60

Query: 269  ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 448
            ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWN VERLKDNKP YKLDHIV
Sbjct: 61   ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNAVERLKDNKPCYKLDHIV 120

Query: 449  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRK 628
            KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHV TIQLCRRL VEF+HYVI ARALRK
Sbjct: 121  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVQTIQLCRRLTVEFLHYVITARALRK 180

Query: 629  VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 808
            VFLSIKGIYYQAEVLGQPIVWI PY FSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ
Sbjct: 181  VFLSIKGIYYQAEVLGQPIVWIAPYAFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 240

Query: 809  SLNLHYPPKLEGQAHTEAKASEDTYALDXXXXXXXXXXXXXXXXRVVVPTEEEAEVDEFP 988
            SLNLHYPPKLEGQA  E K SEDTYALD                RVVVP  EEAE DEFP
Sbjct: 241  SLNLHYPPKLEGQAQAETKISEDTYALDSESSMEKLAALSASLARVVVPAIEEAEADEFP 300

Query: 989  ADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDKSLC 1168
             DGE+ AQEED +KELEAQEKHKKLFEGLKFFLNREVPREALAF+IRSFGG VSWDKSLC
Sbjct: 301  TDGEVTAQEEDRKKELEAQEKHKKLFEGLKFFLNREVPREALAFIIRSFGGDVSWDKSLC 360

Query: 1169 IGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQLPP 1348
            IGATYDVTDS ITHQIVDRPGQQTP IGRYYVQPQWVFD VNARLLLPV++YFPG+QLPP
Sbjct: 361  IGATYDVTDSCITHQIVDRPGQQTPIIGRYYVQPQWVFDCVNARLLLPVAEYFPGMQLPP 420

Query: 1349 HLSPFVSEKEGDYVPPEKLKLLALQRGEHPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1528
            HLSPFVSEKEGDY+PPEKLKLLALQRGE PG                             
Sbjct: 421  HLSPFVSEKEGDYIPPEKLKLLALQRGEDPGHLEEEEEEDEDDDNEGDVAAENEEEDVEV 480

Query: 1529 XXXXXXXXXXXXXXXXXXXGRVQAPPTAPEEPRMEGKKPRVMAGTVKLEDRQRLAQEEES 1708
                                  + P       ++E K+        + +    +  ++  
Sbjct: 481  ESEEEEEEEVHLSALEQHRLEEKKPQVMAGTVKLEDKQRLAQEEESEAKRLAIMMMKKRE 540

Query: 1709 EAKRLAIMMMKKREKYLYNKIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKARPV 1882
            +     IM  K+R+    NK+   ++RK            AHD+AVRSEKKAK+ RPV
Sbjct: 541  KYLYQKIMFGKRRKIREANKL--AEKRK------------AHDDAVRSEKKAKRTRPV 584


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,074,653
Number of extensions: 1738787
Number of successful extensions: 9099
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8926
Number of HSP's successfully gapped: 2
Length of query: 648
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 540
Effective length of database: 12,373,671
Effective search space: 6681782340
Effective search space used: 6681782340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008130
         (1946 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_055118.1| pescadillo homolog isoform 1 [Homo sapiens].         968   0.0  
Alignment   gi|NP_001230154.1| pescadillo homolog isoform 2 [Homo sapiens].      954   0.0  

>ref|NP_055118.1| pescadillo homolog isoform 1 [Homo sapiens].
          Length = 588

 Score =  968 bits (2502), Expect = 0.0
 Identities = 496/598 (82%), Positives = 507/598 (84%), Gaps = 1/598 (0%)
 Frame = +2

Query: 89   MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 268
            MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA
Sbjct: 1    MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 60

Query: 269  ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 448
            ARTFYLIKDI+FLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHI+
Sbjct: 61   ARTFYLIKDIRFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHII 120

Query: 449  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRK 628
            KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHV TIQLCRRL VEFMHY+IAARALRK
Sbjct: 121  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVQTIQLCRRLTVEFMHYIIAARALRK 180

Query: 629  VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 808
            VFLSIKGIYYQAEVLGQPIVWITPY FSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ
Sbjct: 181  VFLSIKGIYYQAEVLGQPIVWITPYAFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 240

Query: 809  SLNLHYPPKLEGQAHTEAKASEDTYALDXXXXXXXXXXXXXXXXRVVVP-TEEEAEVDEF 985
             LNLHYPPKLEGQA  EAKA E TYALD                RVVVP TEEEAEVDEF
Sbjct: 241  LLNLHYPPKLEGQAQAEAKAGEGTYALDSESCMEKLAALSASLARVVVPATEEEAEVDEF 300

Query: 986  PADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDKSL 1165
            P DGEM+AQEED RKELEAQEKHKKLFEGLKFFLNREVPREALAF+IRSFGG VSWDKSL
Sbjct: 301  PTDGEMSAQEEDRRKELEAQEKHKKLFEGLKFFLNREVPREALAFIIRSFGGEVSWDKSL 360

Query: 1166 CIGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQLP 1345
            CIGATYDVTDS ITHQIVDRPGQQT  IGR YVQPQWVFDSVNARLLLPV++YF GVQLP
Sbjct: 361  CIGATYDVTDSRITHQIVDRPGQQTSVIGRCYVQPQWVFDSVNARLLLPVAEYFSGVQLP 420

Query: 1346 PHLSPFVSEKEGDYVPPEKLKLLALQRGEHPGXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1525
            PHLSPFV+EKEGDYVPPEKLKLLALQRGE PG                            
Sbjct: 421  PHLSPFVTEKEGDYVPPEKLKLLALQRGEDPGNLNESEEEEEEDDNNEGDGDEEGENEEE 480

Query: 1526 XXXXXXXXXXXXXXXXXXXXGRVQAPPTAPEEPRMEGKKPRVMAGTVKLEDRQRLAQEEE 1705
                                   +A   A EE RMEGKKPRVMAGT+KLED+QRLAQEEE
Sbjct: 481  EEDAEAGSEK-----------EEEARLAALEEQRMEGKKPRVMAGTLKLEDKQRLAQEEE 529

Query: 1706 SEAKRLAIMMMKKREKYLYNKIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKARP 1879
            SEAKRLAIMMMKKREKYLY KIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKARP
Sbjct: 530  SEAKRLAIMMMKKREKYLYQKIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKARP 587


>ref|NP_001230154.1| pescadillo homolog isoform 2 [Homo sapiens].
          Length = 583

 Score =  954 bits (2466), Expect = 0.0
 Identities = 492/598 (82%), Positives = 502/598 (83%), Gaps = 1/598 (0%)
 Frame = +2

Query: 89   MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 268
            MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA
Sbjct: 1    MGGLEKKKYERGSATNYITRNKARKKLQLSLADFRRLCILKGIYPHEPKHKKKVNKGSTA 60

Query: 269  ARTFYLIKDIKFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHIV 448
            ARTFYLIKDI+FLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHI+
Sbjct: 61   ARTFYLIKDIRFLLHEPIVNKFREYKVFVRKLRKAYGKSEWNTVERLKDNKPNYKLDHII 120

Query: 449  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVHTIQLCRRLAVEFMHYVIAARALRK 628
            KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHV TIQLCRRL VEFMHY+IAARALRK
Sbjct: 121  KERYPTFIDALRDLDDALSMCFLFSTFPRTGKCHVQTIQLCRRLTVEFMHYIIAARALRK 180

Query: 629  VFLSIKGIYYQAEVLGQPIVWITPYTFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 808
            VFLSIKGIYYQAEVLGQPIVWITPY FSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ
Sbjct: 181  VFLSIKGIYYQAEVLGQPIVWITPYAFSHDHPTDVDYRVMATFTEFYTTLLGFVNFRLYQ 240

Query: 809  SLNLHYPPKLEGQAHTEAKASEDTYALDXXXXXXXXXXXXXXXXRVVVP-TEEEAEVDEF 985
             LNLHYPPKLEGQA  EAKA E TYALD                RVVVP TEEEAEVDEF
Sbjct: 241  LLNLHYPPKLEGQAQAEAKAGEGTYALDSESCMEKLAALSASLARVVVPATEEEAEVDEF 300

Query: 986  PADGEMAAQEEDHRKELEAQEKHKKLFEGLKFFLNREVPREALAFVIRSFGGLVSWDKSL 1165
            P DG     EED RKELEAQEKHKKLFEGLKFFLNREVPREALAF+IRSFGG VSWDKSL
Sbjct: 301  PTDG-----EEDRRKELEAQEKHKKLFEGLKFFLNREVPREALAFIIRSFGGEVSWDKSL 355

Query: 1166 CIGATYDVTDSSITHQIVDRPGQQTPTIGRYYVQPQWVFDSVNARLLLPVSDYFPGVQLP 1345
            CIGATYDVTDS ITHQIVDRPGQQT  IGR YVQPQWVFDSVNARLLLPV++YF GVQLP
Sbjct: 356  CIGATYDVTDSRITHQIVDRPGQQTSVIGRCYVQPQWVFDSVNARLLLPVAEYFSGVQLP 415

Query: 1346 PHLSPFVSEKEGDYVPPEKLKLLALQRGEHPGXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1525
            PHLSPFV+EKEGDYVPPEKLKLLALQRGE PG                            
Sbjct: 416  PHLSPFVTEKEGDYVPPEKLKLLALQRGEDPGNLNESEEEEEEDDNNEGDGDEEGENEEE 475

Query: 1526 XXXXXXXXXXXXXXXXXXXXGRVQAPPTAPEEPRMEGKKPRVMAGTVKLEDRQRLAQEEE 1705
                                   +A   A EE RMEGKKPRVMAGT+KLED+QRLAQEEE
Sbjct: 476  EEDAEAGSEK-----------EEEARLAALEEQRMEGKKPRVMAGTLKLEDKQRLAQEEE 524

Query: 1706 SEAKRLAIMMMKKREKYLYNKIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKARP 1879
            SEAKRLAIMMMKKREKYLY KIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKARP
Sbjct: 525  SEAKRLAIMMMKKREKYLYQKIMFGKRRKIREANKLAEKRKAHDEAVRSEKKAKKARP 582


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,704,275
Number of extensions: 2096776
Number of successful extensions: 10559
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10412
Number of HSP's successfully gapped: 4
Length of query: 648
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 539
Effective length of database: 14,704,088
Effective search space: 7925503432
Effective search space used: 7925503432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008130
         (1946 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         400   e-108
gb|GL894932.2| Sus scrofa unplaced genomic scaffold ChrUScaf2816      375   e-101
Sscrofa_Chr15                                                         105   9e-20

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  400 bits (202), Expect = e-108
 Identities = 202/202 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1438     aggaaatttgaatgaatccgaacaagaggatgaagaggaagataacgaaggcgatgatga 1497
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50583092 aggaaatttgaatgaatccgaacaagaggatgaagaggaagataacgaaggcgatgatga 50583033

                                                                            
Query: 1498     agagggagaaaaggaggaagatatagaggctggttcagaagaggaggaagaggccagact 1557
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50583032 agagggagaaaaggaggaagatatagaggctggttcagaagaggaggaagaggccagact 50582973

                                                                            
Query: 1558     gacagccctggaggagcggaggatggaggggagggtgcaggccccaccaacagccccaga 1617
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50582972 gacagccctggaggagcggaggatggaggggagggtgcaggccccaccaacagccccaga 50582913

                                      
Query: 1618     ggagccgaggatggaggggaag 1639
                ||||||||||||||||||||||
Sbjct: 50582912 ggagccgaggatggaggggaag 50582891



 Score =  375 bits (189), Expect = e-101
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1252     caggtactacgtgcagccccagtgggtgtttgactctgtgaatgcccggctcctcctccc 1311
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50583715 caggtactacgtgcagccccagtgggtgtttgactctgtgaatgcccggctcctcctccc 50583656

                                                                            
Query: 1312     ggtgtcagactacttccccggggtgcagctgcccccacacctctcacccttcgtgtcaga 1371
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50583655 ggtgtcagactacttccccggggtgcagctgcccccacacctctcacccttcgtgtcaga 50583596

                                                                            
Query: 1372     gaaggaaggcgattatgtcccccctgagaagctgaagttgctggccctgcagcgagggga 1431
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50583595 gaaggaaggcgattatgtcccccctgagaagctgaagttgctggccctgcagcgagggga 50583536

                         
Query: 1432     gcatccagg 1440
                |||||||||
Sbjct: 50583535 gcatccagg 50583527



 Score =  347 bits (175), Expect = 1e-92
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                            
Query: 456      ggtaccccacgttcatagacgccctgcgcgacctggatgacgccctctccatgtgcttcc 515
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50587798 ggtaccccacgttcatagacgccctgcgcgacctggatgacgccctctccatgtgcttcc 50587739

                                                                            
Query: 516      tcttctccaccttcccgaggaccggcaagtgccacgtgcacaccatccaactgtgccgcc 575
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50587738 tcttctccaccttcccgaggaccggcaagtgccacgtgcacaccatccaactgtgccgcc 50587679

                                                                       
Query: 576      ggctggccgtggagttcatgcactatgtcatcgccgcccgtgccctgcgcaaggt 630
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50587678 ggctggccgtggagttcatgcactatgtcatcgccgcccgtgccctgcgcaaggt 50587624



 Score =  327 bits (165), Expect = 1e-86
 Identities = 165/165 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1638     agaagcccagagtgatggcgggcactgtgaagctggaggacaggcagcgcctggcccaag 1697
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50582757 agaagcccagagtgatggcgggcactgtgaagctggaggacaggcagcgcctggcccaag 50582698

                                                                            
Query: 1698     aggaggaaagtgaggccaagcgcctggccatcatgatgatgaagaagcgggaaaagtacc 1757
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50582697 aggaggaaagtgaggccaagcgcctggccatcatgatgatgaagaagcgggaaaagtacc 50582638

                                                             
Query: 1758     tttacaacaagatcatgtttggcaagagacgcaaaatccgcgagg 1802
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50582637 tttacaacaagatcatgtttggcaagagacgcaaaatccgcgagg 50582593



 Score =  315 bits (159), Expect = 5e-83
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                            
Query: 190      caggcggctctgcatccttaaggggatttatccccatgaaccaaaacacaaaaagaaagt 249
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50590231 caggcggctctgcatccttaaggggatttatccccatgaaccaaaacacaaaaagaaagt 50590172

                                                                            
Query: 250      taacaagggctccacggcggcccgaaccttttaccttatcaaagacatcaagttcctcct 309
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50590171 taacaagggctccacggcggcccgaaccttttaccttatcaaagacatcaagttcctcct 50590112

                                                       
Query: 310      ccatgaacccattgtcaacaagttccgggaatacaaggt 348
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 50590111 ccatgaacccattgtcaacaagttccgggaatacaaggt 50590073



 Score =  264 bits (133), Expect = 2e-67
 Identities = 133/133 (100%)
 Strand = Plus / Minus

                                                                            
Query: 997      ggagatggcggcacaggaagaggaccacagaaaggagctggaggcgcaggaaaagcacaa 1056
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50584435 ggagatggcggcacaggaagaggaccacagaaaggagctggaggcgcaggaaaagcacaa 50584376

                                                                            
Query: 1057     gaagctctttgagggcctgaagttcttcctgaaccgtgaggtgccccgagaggccctggc 1116
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50584375 gaagctctttgagggcctgaagttcttcctgaaccgtgaggtgccccgagaggccctggc 50584316

                             
Query: 1117     tttcgtcatcagg 1129
                |||||||||||||
Sbjct: 50584315 tttcgtcatcagg 50584303



 Score =  262 bits (132), Expect = 7e-67
 Identities = 145/148 (97%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1800     aggccaacaaactggcagagaagcggaaagcccatgatgaggctgtgaggtctgagaaga 1859
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50580750 aggccaacaaactggcagagaagcggaaagcccatgatgaggctgtgaggtctgagaaga 50580691

                                                                            
Query: 1860     aagccaagaaagcaaggccagtgtgattggcaaa-cctctggattggtgaggccagctcc 1918
                |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 50580690 aagccaagaaggcaaggccagtgtgattggcaaagcctctggattggtgaggccagctcc 50580631

                                            
Query: 1919     tggtggctgggcttggcataagcaggcc 1946
                |||||||||||||||||||| |||||||
Sbjct: 50580630 tggtggctgggcttggcataggcaggcc 50580603



 Score =  260 bits (131), Expect = 3e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1127     aggagttttggggggctcgtgtcctgggacaaatctctgtgcattggggccacctatgac 1186
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50583968 aggagttttggggggctcgtgtcctgggacaaatctctgtgcattggggccacctatgac 50583909

                                                                            
Query: 1187     gtcacagactccagcatcacccaccagattgtcgaccggccagggcagcagacccccacc 1246
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50583908 gtcacagactccagcatcacccaccagattgtcgaccggccagggcagcagacccccacc 50583849

                           
Query: 1247     atcggcaggta 1257
                |||||||||||
Sbjct: 50583848 atcggcaggta 50583838



 Score =  232 bits (117), Expect = 6e-58
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                            
Query: 719      cacccaacagacgtggactacagggtcatggccaccttcaccgagttttacaccaccttg 778
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50585191 cacccaacagacgtggactacagggtcatggccaccttcaccgagttttacaccaccttg 50585132

                                                                         
Query: 779      ctgggctttgtcaacttccgcctctaccagtctctcaacctgcactacccgccaaag 835
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50585131 ctgggctttgtcaacttccgcctctaccagtctctcaacctgcactacccgccaaag 50585075



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                            
Query: 345      aggtgttcgtccggaagctgcggaaggcttatgggaagagtgagtggaacacggtggagc 404
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50589245 aggtgttcgtccggaagctgcggaaggcttatgggaagagtgagtggaacacggtggagc 50589186

                                                                      
Query: 405      gtctgaaggacaacaagcccaactacaagctcgaccacatcgtcaaggagcggt 458
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50589185 gtctgaaggacaacaagcccaactacaagctcgaccacatcgtcaaggagcggt 50589132



 Score =  220 bits (111), Expect = 2e-54
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                            
Query: 2        gggcctcggggccctgtaccgcgcacatgcgggaggaagtggcgctacctgtccgctcgg 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50597918 gggcctcggggccctgtaccgcgcacatgcgggaggaagtggcgctacctgtccgctcgg 50597859

                                                                   
Query: 62       cactggtagacctttcagcgtggagccatgggcggcctggagaagaagaag 112
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50597858 cactggtagacctttcagcgtggagccatgggcggcctggagaagaagaag 50597808



 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                            
Query: 627      aggtcttcctgtccatcaaaggcatttactaccaggccgaagtgcttgggcagcccatcg 686
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50587543 aggtcttcctgtccatcaaaggcatttactaccaggccgaagtgcttgggcagcccatcg 50587484

                                                
Query: 687      tgtggatcacaccttacaccttctcccacgac 718
                ||||||||||||||||||||||||||||||||
Sbjct: 50587483 tgtggatcacaccttacaccttctcccacgac 50587452



 Score =  178 bits (90), Expect = 8e-42
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                            
Query: 909      agaaactggccgccctcagtgccagtctagcccgtgtggtggtgcctacagaggaggaag 968
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50584674 agaaactggccgccctcagtgccagtctagcccgtgtggtggtgcctacagaggaggaag 50584615

                                              
Query: 969      ccgaggtggatgagtttcctgctgatgggg 998
                ||||||||||||||||||||||||||||||
Sbjct: 50584614 ccgaggtggatgagtttcctgctgatgggg 50584585



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Minus

                                                                            
Query: 110      aagtatgaacgaggctctgctaccaactacatcacccgcaacaaagcccggaagaagctg 169
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50594809 aagtatgaacgaggctctgctaccaactacatcacccgcaacaaagcccggaagaagctg 50594750

                                        
Query: 170      caactcagcctggccgacttcagg 193
                ||||||||||||||||||||||||
Sbjct: 50594749 caactcagcctggccgacttcagg 50594726



 Score =  153 bits (77), Expect = 4e-34
 Identities = 77/77 (100%)
 Strand = Plus / Minus

                                                                            
Query: 834      agctcgagggtcaggcccacacagaagcgaaggccagtgaggacacctacgctttggact 893
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50584964 agctcgagggtcaggcccacacagaagcgaaggccagtgaggacacctacgctttggact 50584905

                                 
Query: 894      ccgagagctcaatggag 910
                |||||||||||||||||
Sbjct: 50584904 ccgagagctcaatggag 50584888


>gb|GL894932.2| Sus scrofa unplaced genomic scaffold ChrUScaf2816
          Length = 188651

 Score =  375 bits (189), Expect = e-101
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1252   caggtactacgtgcagccccagtgggtgtttgactctgtgaatgcccggctcctcctccc 1311
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113828 caggtactacgtgcagccccagtgggtgtttgactctgtgaatgcccggctcctcctccc 113887

                                                                          
Query: 1312   ggtgtcagactacttccccggggtgcagctgcccccacacctctcacccttcgtgtcaga 1371
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113888 ggtgtcagactacttccccggggtgcagctgcccccacacctctcacccttcgtgtcaga 113947

                                                                          
Query: 1372   gaaggaaggcgattatgtcccccctgagaagctgaagttgctggccctgcagcgagggga 1431
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113948 gaaggaaggcgattatgtcccccctgagaagctgaagttgctggccctgcagcgagggga 114007

                       
Query: 1432   gcatccagg 1440
              |||||||||
Sbjct: 114008 gcatccagg 114016



 Score =  347 bits (175), Expect = 1e-92
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                          
Query: 456    ggtaccccacgttcatagacgccctgcgcgacctggatgacgccctctccatgtgcttcc 515
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109315 ggtaccccacgttcatagacgccctgcgcgacctggatgacgccctctccatgtgcttcc 109374

                                                                          
Query: 516    tcttctccaccttcccgaggaccggcaagtgccacgtgcacaccatccaactgtgccgcc 575
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109375 tcttctccaccttcccgaggaccggcaagtgccacgtgcacaccatccaactgtgccgcc 109434

                                                                     
Query: 576    ggctggccgtggagttcatgcactatgtcatcgccgcccgtgccctgcgcaaggt 630
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109435 ggctggccgtggagttcatgcactatgtcatcgccgcccgtgccctgcgcaaggt 109489



 Score =  307 bits (155), Expect = 1e-80
 Identities = 158/159 (99%)
 Strand = Plus / Plus

                                                                          
Query: 190    caggcggctctgcatccttaaggggatttatccccatgaaccaaaacacaaaaagaaagt 249
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106731 caggcggctctgcatccttaaggggatttatccccatgaaccaaaacacaaaaagaaagt 106790

                                                                          
Query: 250    taacaagggctccacggcggcccgaaccttttaccttatcaaagacatcaagttcctcct 309
              ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 106791 taacaagggctccacggcggcccgaaccttttatcttatcaaagacatcaagttcctcct 106850

                                                     
Query: 310    ccatgaacccattgtcaacaagttccgggaatacaaggt 348
              |||||||||||||||||||||||||||||||||||||||
Sbjct: 106851 ccatgaacccattgtcaacaagttccgggaatacaaggt 106889



 Score =  262 bits (132), Expect = 7e-67
 Identities = 145/148 (97%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                          
Query: 1800   aggccaacaaactggcagagaagcggaaagcccatgatgaggctgtgaggtctgagaaga 1859
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115724 aggccaacaaactggcagagaagcggaaagcccatgatgaggctgtgaggtctgagaaga 115783

                                                                          
Query: 1860   aagccaagaaagcaaggccagtgtgattggcaaa-cctctggattggtgaggccagctcc 1918
              |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 115784 aagccaagaaggcaaggccagtgtgattggcaaagcctctggattggtgaggccagctcc 115843

                                          
Query: 1919   tggtggctgggcttggcataagcaggcc 1946
              |||||||||||||||||||| |||||||
Sbjct: 115844 tggtggctgggcttggcataggcaggcc 115871



 Score =  260 bits (131), Expect = 3e-66
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1127   aggagttttggggggctcgtgtcctgggacaaatctctgtgcattggggccacctatgac 1186
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113575 aggagttttggggggctcgtgtcctgggacaaatctctgtgcattggggccacctatgac 113634

                                                                          
Query: 1187   gtcacagactccagcatcacccaccagattgtcgaccggccagggcagcagacccccacc 1246
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113635 gtcacagactccagcatcacccaccagattgtcgaccggccagggcagcagacccccacc 113694

                         
Query: 1247   atcggcaggta 1257
              |||||||||||
Sbjct: 113695 atcggcaggta 113705



 Score =  232 bits (117), Expect = 6e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                          
Query: 719    cacccaacagacgtggactacagggtcatggccaccttcaccgagttttacaccaccttg 778
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112221 cacccaacagacgtggactacagggtcatggccaccttcaccgagttttacaccaccttg 112280

                                                                       
Query: 779    ctgggctttgtcaacttccgcctctaccagtctctcaacctgcactacccgccaaag 835
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112281 ctgggctttgtcaacttccgcctctaccagtctctcaacctgcactacccgccaaag 112337



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                          
Query: 345    aggtgttcgtccggaagctgcggaaggcttatgggaagagtgagtggaacacggtggagc 404
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107717 aggtgttcgtccggaagctgcggaaggcttatgggaagagtgagtggaacacggtggagc 107776

                                                                    
Query: 405    gtctgaaggacaacaagcccaactacaagctcgaccacatcgtcaaggagcggt 458
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107777 gtctgaaggacaacaagcccaactacaagctcgaccacatcgtcaaggagcggt 107830



 Score =  204 bits (103), Expect = 1e-49
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1020   accacagaaaggagctggaggcgcaggaaaagcacaagaagctctttgagggcctgaagt 1079
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113073 accacagaaaggagctggaggcgcaggaaaagcacaagaagctctttgagggcctgaagt 113132

                                                         
Query: 1080   tcttcctgaaccgtgaggtgccccgagaggccctggctttcgt 1122
              |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113133 tcttcctgaaccgtgaggtgccccgagaggccctggctttcgt 113175



 Score =  178 bits (90), Expect = 8e-42
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                          
Query: 909    agaaactggccgccctcagtgccagtctagcccgtgtggtggtgcctacagaggaggaag 968
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112765 agaaactggccgccctcagtgccagtctagcccgtgtggtggtgcctacagaggaggaag 112824

                                            
Query: 969    ccgaggtggatgagtttcctgctgatgggg 998
              ||||||||||||||||||||||||||||||
Sbjct: 112825 ccgaggtggatgagtttcctgctgatgggg 112854



 Score =  174 bits (88), Expect = 1e-40
 Identities = 91/92 (98%)
 Strand = Plus / Plus

                                                                          
Query: 627    aggtcttcctgtccatcaaaggcatttactaccaggccgaagtgcttgggcagcccatcg 686
              |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 109647 aggtcttcctgtccatcaaaggcatttactaccaggccgaagtgctggggcagcccatcg 109706

                                              
Query: 687    tgtggatcacaccttacaccttctcccacgac 718
              ||||||||||||||||||||||||||||||||
Sbjct: 109707 tgtggatcacaccttacaccttctcccacgac 109738



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                          
Query: 110    aagtatgaacgaggctctgctaccaactacatcacccgcaacaaagcccggaagaagctg 169
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102255 aagtatgaacgaggctctgctaccaactacatcacccgcaacaaagcccggaagaagctg 102314

                                      
Query: 170    caactcagcctggccgacttcagg 193
              ||||||||||||||||||||||||
Sbjct: 102315 caactcagcctggccgacttcagg 102338



 Score =  155 bits (78), Expect = 1e-34
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1438   aggaaatttgaatgaatccgaacaagaggatgaagaggaagataacgaaggcgatgatga 1497
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114451 aggaaatttgaatgaatccgaacaagaggatgaagaggaagataacgaaggcgatgatga 114510

                                
Query: 1498   agagggagaaaaggagga 1515
              ||||||||||||||||||
Sbjct: 114511 agagggagaaaaggagga 114528



 Score =  153 bits (77), Expect = 4e-34
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                          
Query: 834    agctcgagggtcaggcccacacagaagcgaaggccagtgaggacacctacgctttggact 893
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112475 agctcgagggtcaggcccacacagaagcgaaggccagtgaggacacctacgctttggact 112534

                               
Query: 894    ccgagagctcaatggag 910
              |||||||||||||||||
Sbjct: 112535 ccgagagctcaatggag 112551



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                      
Query: 2     gggcctcggggccctgtaccgcgcacatgcgggaggaagtg 42
             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 98971 gggcctcggggccctgtaccgcgcacatgcgggaggaagtg 99011


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  105 bits (53), Expect = 9e-20
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                            
Query: 1758     tttacaacaagatcatgtttggcaagagacgcaaaatccgcgaggccaacaaactggcag 1817
                |||| |||||||||||||||||||||||  ||||||||   ||||||||||| |||||||
Sbjct: 18005960 tttataacaagatcatgtttggcaagaggtgcaaaatctatgaggccaacaagctggcag 18005901

                                                         
Query: 1818     agaagcggaaagcccatgatgaggctgtgaggtctgagaag 1858
                |||||| ||| || ||||||||| || ||||||||||||||
Sbjct: 18005900 agaagcagaatgctcatgatgagactatgaggtctgagaag 18005860


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,588,862
Number of extensions: 473
Number of successful extensions: 473
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 469
Number of HSP's successfully gapped: 30
Length of query: 1946
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1924
Effective length of database: 2,808,408,574
Effective search space: 5403378096376
Effective search space used: 5403378096376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)