Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008135
(1037 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095653.1| transcriptional regulator ERG [Bos taurus]. 603 e-173
Alignment gi|NP_001039763.1| Friend leukemia integration 1 transcription ... 336 2e-92
Alignment gi|NP_001068905.1| GA-binding protein alpha chain [Bos taurus]. 86 7e-17
Alignment gi|NP_001092576.1| protein C-ets-1 [Bos taurus]. 65 1e-10
Alignment gi|NP_001015514.2| transcription factor ETV6 [Bos taurus]. 62 6e-10
Alignment gi|NP_001073683.1| protein C-ets-2 [Bos taurus]. 62 1e-09
Alignment gi|NP_001075047.1| SAM pointed domain-containing Ets transcript... 60 4e-09
>ref|NP_001095653.1| transcriptional regulator ERG [Bos taurus].
Length = 455
Score = 603 bits (1555), Expect = e-173
Identities = 291/308 (94%), Positives = 299/308 (97%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
MASTIKEALSVVSEDQSLFECAYGTPHL KTDMTASSSGDYGQTSKMSPRVPQQDWLSQ
Sbjct: 1 MASTIKEALSVVSEDQSLFECAYGTPHL-PKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 59
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMT 473
PPARVTIKMECNPNQVNGSR+SP+ECSMAKGGKMVGSPD VGM+Y SYMEEKH+PPPNMT
Sbjct: 60 PPARVTIKMECNPNQVNGSRNSPDECSMAKGGKMVGSPDTVGMNYSSYMEEKHMPPPNMT 119
Query: 474 TSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL 653
T+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL
Sbjct: 120 TNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL 179
Query: 654 TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTSH 833
TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYE PRRSAWTSH
Sbjct: 180 TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEPPRRSAWTSH 239
Query: 834 GHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELLSD 1013
GHP PQSKAAQPSPST+PKTEDQRPQLDPYQILGPTS R ANPGSGQIQLWQFLLELLSD
Sbjct: 240 GHPAPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSD 299
Query: 1014 SFHSSCIT 1037
S +S+CIT
Sbjct: 300 SSNSNCIT 307
>ref|NP_001039763.1| Friend leukemia integration 1 transcription factor [Bos taurus].
Length = 452
Score = 336 bits (862), Expect = 2e-92
Identities = 176/310 (56%), Positives = 221/310 (71%), Gaps = 2/310 (0%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWMNQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K GK+VG ++ MSY SY++EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCGKLVGGGESNTMSYTSYVDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCK+ K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKLNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETP-LPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWT 827
T YN ++LLSHL YLRE+ LP+ T+ D + + + + D Y++ RR W
Sbjct: 178 ATSLYNTEVLLSHLTYLRESSLLPYNTTSHTDPSSRLNVK------EDPSYDSVRRGGWG 231
Query: 828 SHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELL 1007
S+ + TM K +QRPQ DPYQILGPTS R ANPGSGQIQLWQFLLELL
Sbjct: 232 SNMNSGLNKSPPLAGAQTMSKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELL 291
Query: 1008 SDSFHSSCIT 1037
SDS ++SCIT
Sbjct: 292 SDSANASCIT 301
>ref|NP_001068905.1| GA-binding protein alpha chain [Bos taurus].
Length = 454
Score = 85.5 bits (210), Expect = 7e-17
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 2/188 (1%)
Frame = +3
Query: 480 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 659
+ R+ +P DP WSTD V W+ W +KE+ + D+D+ NI G+ELC ++++DF + P
Sbjct: 177 QERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDIDLTTL-NISGRELCSLSQEDFFQRVP 235
Query: 660 SYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTSHGH 839
+IL SHL LR+ L ++ D P + S ++
Sbjct: 236 --RGEILWSHLELLRKYVL-----------ASQEQQMNEIVTIDQPVQIIPASVQSA--- 279
Query: 840 PTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPAN--PGSGQIQLWQFLLELLSD 1013
TP + A S + K + + P +I G P N +GQIQLWQFLLELL+D
Sbjct: 280 -TPTAIKAINSSAKAAKVQ-RAP-----RISGEDRSSPGNRTGNNGQIQLWQFLLELLTD 332
Query: 1014 SFHSSCIT 1037
CI+
Sbjct: 333 KDARDCIS 340
>ref|NP_001092576.1| protein C-ets-1 [Bos taurus].
Length = 441
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = +3
Query: 480 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 659
++R+ +P DP W+ HVR W+ WAV E+ L VD F ++G LC + KD F L P
Sbjct: 60 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 118
Query: 660 SYNADILLSHLHYLRE 707
+ DIL HL L++
Sbjct: 119 DFVGDILWEHLEILQK 134
>ref|NP_001015514.2| transcription factor ETV6 [Bos taurus].
Length = 452
Score = 62.4 bits (150), Expect = 6e-10
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 11/201 (5%)
Frame = +3
Query: 357 SPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPN-MTTSERRVIVPA----DPTLWS 521
+P +CS+ + P++ SY S HVP P + E + +PA P WS
Sbjct: 4 TPAQCSIKQERISYTPPESPVPSYAS-STPLHVPVPRALRMEEDSIRLPAHLRLQPMFWS 62
Query: 522 TDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYL 701
D V QWL+WA E+ L +D F+ ++GK L +TK+DF+ +P ++ D+L L ++
Sbjct: 63 RDDVAQWLKWAENEFSLRPIDSNTFE-MNGKALLLLTKEDFRYRSP-HSGDVLYELLQHI 120
Query: 702 RETPLPHLTSDDV---DKALQNSPRLMHARNTDLP---YEAPRRSAWTSHGHPTPQSKAA 863
+ P + ++ ++ +N + R SA H +P P +
Sbjct: 121 LKQRKPRILFSPFFHPGNSIHTQQEVILHQNHEEDNGVQRTSRPSAENVHQNP-PTIELL 179
Query: 864 QPSPSTMPKTEDQRPQLDPYQ 926
S S P T + RP DP Q
Sbjct: 180 HRSRS--PITTNHRPSPDPEQ 198
>ref|NP_001073683.1| protein C-ets-2 [Bos taurus].
Length = 470
Score = 61.6 bits (148), Expect = 1e-09
Identities = 29/74 (39%), Positives = 43/74 (58%)
Frame = +3
Query: 480 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 659
+RR+ +P +P LW+ V QWL WA E+ L DV++ F + G+ LC + K+ F L P
Sbjct: 94 QRRLGIPKNPWLWTEQQVCQWLLWATNEFSLVDVNLQRF-GMTGQVLCNLGKERFLELAP 152
Query: 660 SYNADILLSHLHYL 701
+ DIL HL +
Sbjct: 153 DFVGDILWEHLEQM 166
>ref|NP_001075047.1| SAM pointed domain-containing Ets transcription factor [Bos
taurus].
Length = 335
Score = 59.7 bits (143), Expect = 4e-09
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 26/161 (16%)
Frame = +3
Query: 360 PEEC----SMAKGGKMVGSPDAVGMSYGSYMEEKHVPP----PNMTTSERRVIVPADPTL 515
PE+C S A GG + +P + + S + + + ++ T+ + + + ADP
Sbjct: 90 PEQCPVIDSQAPGGSLDLAPGGLTLEEHSLEQVQSMVVGEVLKDIETACKLLNITADPVD 149
Query: 516 WSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHL- 692
WS +V++WL W +Y LP V FQ + GKELC M+++ F++ +P D+L +HL
Sbjct: 150 WSPGNVQKWLLWTEHQYRLPPVG-KAFQELGGKELCAMSEEQFRQRSP-LGGDVLHAHLD 207
Query: 693 -----------------HYLRETPLPHLTSDDVDKALQNSP 764
H+ T T +VD + P
Sbjct: 208 IWKSAAWMKERTSPGAIHFCASTSEESWTDSEVDSSCSGQP 248
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,901,933
Number of extensions: 1217004
Number of successful extensions: 5923
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5863
Number of HSP's successfully gapped: 7
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008135
(1037 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859605.1| PREDICTED: similar to Transcriptional regulator... 596 e-170
Alignment gi|XP_544885.2| PREDICTED: similar to v-ets erythroblastosis vi... 582 e-166
Alignment gi|XP_857242.1| PREDICTED: similar to Friend leukemia integrati... 367 e-102
Alignment gi|XP_857320.1| PREDICTED: similar to Friend leukemia integrati... 357 8e-99
Alignment gi|XP_857152.1| PREDICTED: similar to Friend leukemia integrati... 354 7e-98
Alignment gi|XP_857284.1| PREDICTED: similar to Friend leukemia integrati... 354 9e-98
Alignment gi|XP_857066.1| PREDICTED: similar to Friend leukemia integrati... 352 3e-97
Alignment gi|XP_859565.1| PREDICTED: similar to Transcriptional regulator... 348 6e-96
Alignment gi|XP_857194.1| PREDICTED: similar to Friend leukemia integrati... 342 3e-94
Alignment gi|XP_546404.2| PREDICTED: similar to Friend leukemia integrati... 329 3e-90
>ref|XP_859605.1| PREDICTED: similar to Transcriptional regulator ERG (Transforming
protein ERG) isoform 3 [Canis familiaris].
Length = 318
Score = 596 bits (1536), Expect = e-170
Identities = 287/301 (95%), Positives = 295/301 (98%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
MASTIKEALSVVSEDQSLFECAYGTPHL AKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ
Sbjct: 1 MASTIKEALSVVSEDQSLFECAYGTPHL-AKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 59
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMT 473
PPARVTIKMECNPNQVNGSR+SP+ECSMAKGGKMVGSPD VGM+YGSYMEEKH+PPPNMT
Sbjct: 60 PPARVTIKMECNPNQVNGSRNSPDECSMAKGGKMVGSPDTVGMNYGSYMEEKHMPPPNMT 119
Query: 474 TSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL 653
T+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL
Sbjct: 120 TNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL 179
Query: 654 TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTSH 833
TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPY+ PRRSAWTSH
Sbjct: 180 TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYDPPRRSAWTSH 239
Query: 834 GHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELLSD 1013
GHPTPQSKAAQPSPS +PKTEDQRPQLDPYQILGPTS R ANPGSGQIQLWQFLLELLS+
Sbjct: 240 GHPTPQSKAAQPSPSAVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSN 299
Query: 1014 S 1016
S
Sbjct: 300 S 300
>ref|XP_544885.2| PREDICTED: similar to v-ets erythroblastosis virus E26 oncogene like
isoform 1 isoform 1 [Canis familiaris].
Length = 342
Score = 582 bits (1501), Expect = e-166
Identities = 287/325 (88%), Positives = 295/325 (90%), Gaps = 24/325 (7%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
MASTIKEALSVVSEDQSLFECAYGTPHL AKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ
Sbjct: 1 MASTIKEALSVVSEDQSLFECAYGTPHL-AKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 59
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMT 473
PPARVTIKMECNPNQVNGSR+SP+ECSMAKGGKMVGSPD VGM+YGSYMEEKH+PPPNMT
Sbjct: 60 PPARVTIKMECNPNQVNGSRNSPDECSMAKGGKMVGSPDTVGMNYGSYMEEKHMPPPNMT 119
Query: 474 TSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL 653
T+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL
Sbjct: 120 TNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL 179
Query: 654 TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT--------------- 788
TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT
Sbjct: 180 TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPE 239
Query: 789 ---------DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPT 941
DLPY+ PRRSAWTSHGHPTPQSKAAQPSPS +PKTEDQRPQLDPYQILGPT
Sbjct: 240 ATQRITTRPDLPYDPPRRSAWTSHGHPTPQSKAAQPSPSAVPKTEDQRPQLDPYQILGPT 299
Query: 942 SYRPANPGSGQIQLWQFLLELLSDS 1016
S R ANPGSGQIQLWQFLLELLS+S
Sbjct: 300 SSRLANPGSGQIQLWQFLLELLSNS 324
>ref|XP_857242.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 7 [Canis familiaris].
Length = 457
Score = 367 bits (943), Expect = e-102
Identities = 185/309 (59%), Positives = 223/309 (72%), Gaps = 1/309 (0%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG ++ M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCSKLVGGSESNAMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTS 830
T YN ++LLSHL YLRETP PHL D V+ L N LMH P P +S
Sbjct: 178 ATSLYNTEVLLSHLSYLRETPQPHLVLDTVESRLTNQMHLMHGTYPFSPVSPPAQSPQKR 237
Query: 831 HGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELLS 1010
H +P+ A QP PS + +QRPQ DPYQILGPTS R ANPGSGQIQLWQFLLELLS
Sbjct: 238 HSEISPRRHAHQPKPSIVSSNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELLS 297
Query: 1011 DSFHSSCIT 1037
DS ++SCIT
Sbjct: 298 DSANASCIT 306
>ref|XP_857320.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 9 [Canis familiaris].
Length = 479
Score = 357 bits (917), Expect = 8e-99
Identities = 189/334 (56%), Positives = 227/334 (67%), Gaps = 26/334 (7%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG ++ M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCSKLVGGSESNAMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHAR---------------- 782
T YN ++LLSHL YLRETP PHL D V+ L N L H R
Sbjct: 178 ATSLYNTEVLLSHLSYLRETPQPHLVLDTVESRLTNQMHLSHKRASWGGLCVSHPPTSIL 237
Query: 783 ---------NTDLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILG 935
+P R WT G P P S+A +PS +TM K +QRPQ DPYQILG
Sbjct: 238 ERERSFFPARQSIPRLPTRPQRWT--GSPAPSSRAVRPS-TTMSKNTEQRPQPDPYQILG 294
Query: 936 PTSYRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
PTS R ANPGSGQIQLWQFLLELLSDS ++SCIT
Sbjct: 295 PTSSRLANPGSGQIQLWQFLLELLSDSANASCIT 328
>ref|XP_857152.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 5 [Canis familiaris].
Length = 459
Score = 354 bits (909), Expect = 7e-98
Identities = 183/311 (58%), Positives = 222/311 (71%), Gaps = 3/311 (0%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG ++ M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCSKLVGGSESNAMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT--DLPYEAPRRSAW 824
T YN ++LLSHL YLRETP PHL D V+ L N L H R + L P S
Sbjct: 178 ATSLYNTEVLLSHLSYLRETPQPHLVLDTVESRLTNQMHLSHKRASWGGLCVSHPPTSIL 237
Query: 825 TSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLEL 1004
+ +A++PS M K +QRPQ DPYQILGPTS R ANPGSGQIQLWQFLLEL
Sbjct: 238 PEASWRVDRHEASKPSSQAMSKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLEL 297
Query: 1005 LSDSFHSSCIT 1037
LSDS ++SCIT
Sbjct: 298 LSDSANASCIT 308
>ref|XP_857284.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 8 [Canis familiaris].
Length = 482
Score = 354 bits (908), Expect = 9e-98
Identities = 185/334 (55%), Positives = 224/334 (67%), Gaps = 26/334 (7%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG ++ M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCSKLVGGSESNAMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT-------------- 788
T YN ++LLSHL YLRETP PHL D V+ L N L H R +
Sbjct: 178 ATSLYNTEVLLSHLSYLRETPQPHLVLDTVESRLTNQMHLSHKRASWGGLCVSHPPTSIL 237
Query: 789 -----------DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILG 935
P P +S H +P+ A QP PS + +QRPQ DPYQILG
Sbjct: 238 PQRHQSVGTYPFSPVSPPAQSPQKRHSEISPRRHAHQPKPSIVSSNTEQRPQPDPYQILG 297
Query: 936 PTSYRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
PTS R ANPGSGQIQLWQFLLELLSDS ++SCIT
Sbjct: 298 PTSSRLANPGSGQIQLWQFLLELLSDSANASCIT 331
>ref|XP_857066.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 3 [Canis familiaris].
Length = 484
Score = 352 bits (904), Expect = 3e-97
Identities = 191/339 (56%), Positives = 231/339 (68%), Gaps = 31/339 (9%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG ++ M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCSKLVGGSESNAMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLM----HA-----------RN 785
T YN ++LLSHL YLRETP PHL D V+ L N L+ HA +
Sbjct: 178 ATSLYNTEVLLSHLSYLRETPQPHLVLDTVESRLTNQMHLVLGLRHACDCSLLAYNTTSH 237
Query: 786 TD---------------LPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDP 920
TD +P R WT G P P S+A +PS +TM K +QRPQ DP
Sbjct: 238 TDQSSRLSVKEGLTDESIPRLPTRPQRWT--GSPAPSSRAVRPS-TTMSKNTEQRPQPDP 294
Query: 921 YQILGPTSYRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
YQILGPTS R ANPGSGQIQLWQFLLELLSDS ++SCIT
Sbjct: 295 YQILGPTSSRLANPGSGQIQLWQFLLELLSDSANASCIT 333
>ref|XP_859565.1| PREDICTED: similar to Transcriptional regulator ERG (Transforming
protein ERG) isoform 2 [Canis familiaris].
Length = 195
Score = 348 bits (892), Expect = 6e-96
Identities = 164/172 (95%), Positives = 168/172 (97%)
Frame = +3
Query: 501 ADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADIL 680
+DPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADIL
Sbjct: 6 SDPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADIL 65
Query: 681 LSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTSHGHPTPQSKA 860
LSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPY+ PRRSAWTSHGHPTPQSKA
Sbjct: 66 LSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYDPPRRSAWTSHGHPTPQSKA 125
Query: 861 AQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELLSDS 1016
AQPSPS +PKTEDQRPQLDPYQILGPTS R ANPGSGQIQLWQFLLELLS+S
Sbjct: 126 AQPSPSAVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSNS 177
>ref|XP_857194.1| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 6 [Canis familiaris].
Length = 454
Score = 342 bits (877), Expect = 3e-94
Identities = 179/309 (57%), Positives = 220/309 (71%), Gaps = 1/309 (0%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG ++ M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCSKLVGGSESNAMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTS 830
T YN ++LLSHL YLRE+ S + + + D+P R WT
Sbjct: 178 ATSLYNTEVLLSHLSYLRESNATVCFSGAPNWRMYIYACTRYPSRQDIPRLPTRPQRWT- 236
Query: 831 HGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELLS 1010
G P P S+A +PS +TM K +QRPQ DPYQILGPTS R ANPGSGQIQLWQFLLELLS
Sbjct: 237 -GSPAPSSRAVRPS-TTMSKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELLS 294
Query: 1011 DSFHSSCIT 1037
DS ++SCIT
Sbjct: 295 DSANASCIT 303
>ref|XP_546404.2| PREDICTED: similar to Friend leukemia integration 1 transcription
factor (Fli-1 proto-oncogene) (ERGB transcription factor)
isoform 1 [Canis familiaris].
Length = 451
Score = 329 bits (843), Expect = 3e-90
Identities = 174/310 (56%), Positives = 219/310 (70%), Gaps = 2/310 (0%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG ++ M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCSKLVGGSESNAMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETP-LPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWT 827
T YN ++LLSHL YLRE+ L + T+ D++ + S + D Y++ RR W
Sbjct: 178 ATSLYNTEVLLSHLSYLRESSLLAYNTTSHTDQSSRLSVK------EDPSYDSVRR-GWG 230
Query: 828 SHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELL 1007
++ + M K +QRPQ DPYQILGPTS R ANPGSGQIQLWQFLLELL
Sbjct: 231 NNVNSGLNKSPPLAGAQAMSKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELL 290
Query: 1008 SDSFHSSCIT 1037
SDS ++SCIT
Sbjct: 291 SDSANASCIT 300
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,951,283
Number of extensions: 1264429
Number of successful extensions: 6072
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 5998
Number of HSP's successfully gapped: 20
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008135
(1037 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359008.1| PREDICTED: transcriptional regulator ERG-lik... 604 e-173
Alignment gi|XP_003130115.2| PREDICTED: Friend leukemia integration 1 tra... 335 3e-92
Alignment gi|NP_001156358.1| protein C-ets-1 [Sus scrofa]. 65 6e-11
Alignment gi|XP_001924633.2| PREDICTED: transcription factor ETV6 [Sus sc... 60 2e-09
Alignment gi|NP_001177183.1| SAM pointed domain-containing Ets transcript... 60 2e-09
Alignment gi|XP_001927597.3| PREDICTED: transcription factor ETV7-like [S... 53 3e-07
>ref|XP_003359008.1| PREDICTED: transcriptional regulator ERG-like [Sus scrofa].
Length = 575
Score = 604 bits (1557), Expect = e-173
Identities = 298/327 (91%), Positives = 300/327 (91%), Gaps = 24/327 (7%)
Frame = +3
Query: 129 KEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQPPARV 308
+EALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQPPARV
Sbjct: 101 QEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQPPARV 160
Query: 309 TIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMTTSERR 488
TIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMTTSERR
Sbjct: 161 TIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMTTSERR 220
Query: 489 VIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYN 668
VIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYN
Sbjct: 221 VIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYN 280
Query: 669 ADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT-------------------- 788
ADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT
Sbjct: 281 ADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEATQRI 340
Query: 789 ----DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPA 956
DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTS R A
Sbjct: 341 TTRPDLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSSRLA 400
Query: 957 NPGSGQIQLWQFLLELLSDSFHSSCIT 1037
NPGSGQIQLWQFLLELLSDS +SSCIT
Sbjct: 401 NPGSGQIQLWQFLLELLSDSSNSSCIT 427
>ref|XP_003130115.2| PREDICTED: Friend leukemia integration 1 transcription factor-like
[Sus scrofa].
Length = 499
Score = 335 bits (858), Expect = 3e-92
Identities = 176/306 (57%), Positives = 219/306 (71%), Gaps = 2/306 (0%)
Frame = +3
Query: 126 IKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQPPAR 305
++EALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++QP R
Sbjct: 173 VEEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQP-VR 231
Query: 306 VTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNMTTSE 482
V +K E + +NGSR SP +CS++K GK+VG ++ MSY SYM+EK+ PPPNMTT+E
Sbjct: 232 VNVKREYD--HMNGSRESPVDCSVSKCGKLVGGGESNAMSYNSYMDEKNGPPPPNMTTNE 289
Query: 483 RRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPS 662
RRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R T
Sbjct: 290 RRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLRATSL 349
Query: 663 YNADILLSHLHYLRETP-LPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTSHGH 839
YN ++LLSHL+YLRE+ L + T+ D SPRL D Y++ RR W ++ +
Sbjct: 350 YNTEVLLSHLNYLRESSLLAYNTTSHTDP----SPRL--NVKEDPSYDSVRRGGWGNNMN 403
Query: 840 PTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELLSDSF 1019
TM K +QRPQ DPYQILGPTS R ANPGSGQIQLWQFLLELLSDS
Sbjct: 404 SGLNKSPPLAGAQTMSKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSA 463
Query: 1020 HSSCIT 1037
++SCIT
Sbjct: 464 NASCIT 469
Score = 67.4 bits (163), Expect = 1e-11
Identities = 32/51 (62%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = +3
Query: 357 SPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNMTTSERRVIVPAD 506
SP +CS++K GK+VG ++ MSY SYM+EK+ PPPNMTT+ERRVIVPA+
Sbjct: 79 SPVDCSVSKCGKLVGGGESNAMSYNSYMDEKNGPPPPNMTTNERRVIVPAE 129
>ref|NP_001156358.1| protein C-ets-1 [Sus scrofa].
Length = 485
Score = 65.1 bits (157), Expect = 6e-11
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = +3
Query: 480 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 659
++R+ +P DP W+ HVR W+ WAV E+ L VD F ++G LC + KD F L P
Sbjct: 104 QQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMNGAALCALGKDCFLELAP 162
Query: 660 SYNADILLSHLHYLRE 707
+ DIL HL L++
Sbjct: 163 DFVGDILWEHLEILQK 178
>ref|XP_001924633.2| PREDICTED: transcription factor ETV6 [Sus scrofa].
Length = 402
Score = 60.1 bits (144), Expect = 2e-09
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Frame = +3
Query: 489 VIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYN 668
VI P WS D V QWL+WA E+ L +D F+ ++GK L +TK+DF+ +P ++
Sbjct: 2 VITGLQPMYWSRDDVAQWLKWAENEFSLRPIDSNTFE-MNGKALLLLTKEDFRYRSP-HS 59
Query: 669 ADILLSHLHYLRETPLPHLTSDDV---DKALQNSPRLMHARN---TDLPYEAPRRSAWTS 830
D+L L ++ + P + ++ P ++ +N + PR S
Sbjct: 60 GDVLYELLQHILKQRKPRILFSPFFHPGNSIHTQPEVILHQNHEEDNCVQRTPRPSVENV 119
Query: 831 HGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQ 926
H +P P + S S P T + RP DP Q
Sbjct: 120 HHNP-PTIELLHRSRS--PITTNHRPSPDPEQ 148
>ref|NP_001177183.1| SAM pointed domain-containing Ets transcription factor [Sus
scrofa].
Length = 335
Score = 60.1 bits (144), Expect = 2e-09
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Frame = +3
Query: 360 PEEC----SMAKGGKMVGSPDAVGMSYGSYMEEKHVPP----PNMTTSERRVIVPADPTL 515
PE+C S A GG + +P + + S + + + ++ T+ + + + ADP
Sbjct: 90 PEQCPVIDSQAPGGSLDLAPSGLTLEEHSLEQVQSMVVGEVLKDIETACKLLNITADPVD 149
Query: 516 WSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHL 692
WS +V++WL W +Y LP V FQ + GKELC M+++ F++ +P D+L +HL
Sbjct: 150 WSPSNVQKWLLWTEHQYRLPPVG-KAFQELGGKELCAMSEEQFRQRSP-LGGDVLHAHL 206
>ref|XP_001927597.3| PREDICTED: transcription factor ETV7-like [Sus scrofa].
Length = 506
Score = 52.8 bits (125), Expect = 3e-07
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +3
Query: 507 PTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADILLS 686
P LWS + V WL WA +EY L F+ ++G+ LC +TKDDF+ P+ + D+L
Sbjct: 174 PVLWSREDVLHWLRWAEQEYSLQHTGEHSFE-MNGRALCILTKDDFRLRAPA-SGDVLYE 231
Query: 687 HLHYLR 704
L Y++
Sbjct: 232 LLQYIK 237
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,013,090
Number of extensions: 781539
Number of successful extensions: 3715
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3691
Number of HSP's successfully gapped: 7
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008135
(1037 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598420.1| transcriptional regulator ERG [Mus musculus]. 566 e-161
Alignment gi|NP_032052.1| Friend leukemia integration 1 transcription fac... 337 9e-93
Alignment gi|NP_032091.2| GA-binding protein alpha chain [Mus musculus]. 84 2e-16
Alignment gi|NP_001033731.1| protein C-ets-1 isoform 2 [Mus musculus]. 80 3e-15
Alignment gi|NP_035938.2| protein C-ets-1 isoform 1 [Mus musculus]. 65 1e-10
Alignment gi|NP_035939.3| protein C-ets-2 [Mus musculus]. 61 1e-09
Alignment gi|NP_031987.3| transcription factor ETV6 [Mus musculus]. 60 3e-09
Alignment gi|NP_038919.1| SAM pointed domain-containing Ets transcription... 55 1e-07
>ref|NP_598420.1| transcriptional regulator ERG [Mus musculus].
Length = 486
Score = 566 bits (1458), Expect = e-161
Identities = 281/331 (84%), Positives = 292/331 (88%), Gaps = 24/331 (7%)
Frame = +3
Query: 117 ASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQP 296
A+ IKEALSVVSEDQSLFECAYGTPHL AKT+MTASSS DYGQTSKMSPRVPQQDWLSQ
Sbjct: 9 AAHIKEALSVVSEDQSLFECAYGTPHL-AKTEMTASSSSDYGQTSKMSPRVPQQDWLSQA 67
Query: 297 PARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMTT 476
PARVTIKMECNP+QVNGSR+SP+ECS+ KGGKMVGSPD VGMSYGSYMEEKHVPPPNMTT
Sbjct: 68 PARVTIKMECNPSQVNGSRNSPDECSVNKGGKMVGSPDTVGMSYGSYMEEKHVPPPNMTT 127
Query: 477 SERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLT 656
+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGL DVD+LLFQNIDGKELCKMTKDDFQRLT
Sbjct: 128 NERRVIVPADPTLWSTDHVRQWLEWAVKEYGLLDVDVLLFQNIDGKELCKMTKDDFQRLT 187
Query: 657 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT---------------- 788
PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT
Sbjct: 188 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEA 247
Query: 789 --------DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTS 944
DLPYE PRRSAWT H H TPQSKAAQPSPS +PKTEDQRPQLDPYQILGPTS
Sbjct: 248 TQRITTRPDLPYEPPRRSAWTGHSHLTPQSKAAQPSPSAVPKTEDQRPQLDPYQILGPTS 307
Query: 945 YRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
R ANPGSGQIQLWQFLLELLSDS +S+CIT
Sbjct: 308 SRLANPGSGQIQLWQFLLELLSDSSNSNCIT 338
>ref|NP_032052.1| Friend leukemia integration 1 transcription factor [Mus musculus].
Length = 452
Score = 337 bits (864), Expect = 9e-93
Identities = 176/310 (56%), Positives = 222/310 (71%), Gaps = 2/310 (0%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG +A M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCNKLVGGGEANPMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEYGL ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYGLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETP-LPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWT 827
T +YN ++LLSHL YLRE+ L + T+ D++ + + + D Y++ RR AW
Sbjct: 178 ATSAYNTEVLLSHLSYLRESSLLAYNTTSHTDQSSRLNVK------EDPSYDSVRRGAWN 231
Query: 828 SHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELL 1007
++ + TM K +QRPQ DPYQILGPTS R ANPGSGQIQLWQFLLELL
Sbjct: 232 NNMNSGLNKSPLLGGSQTMGKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELL 291
Query: 1008 SDSFHSSCIT 1037
SDS ++SCIT
Sbjct: 292 SDSANASCIT 301
>ref|NP_032091.2| GA-binding protein alpha chain [Mus musculus].
Length = 454
Score = 83.6 bits (205), Expect = 2e-16
Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 5/191 (2%)
Frame = +3
Query: 480 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 659
+ R+ +P DP WSTD V W+ W +KE+ + D+D+ NI G+ELC + ++DF + P
Sbjct: 177 QERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTL-NISGRELCSLNQEDFFQRVP 235
Query: 660 SYNADILLSHLHYLRETPLPHLTSD-----DVDKALQNSPRLMHARNTDLPYEAPRRSAW 824
+IL SHL LR+ L +D+ +Q P +P P
Sbjct: 236 --RGEILWSHLELLRKYVLASQEQQMNEIVTIDQPVQIIP-------ASVPPATP----- 281
Query: 825 TSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLEL 1004
T+ +KAA+ S ED+ +S +GQIQLWQFLLEL
Sbjct: 282 TTIKVINSSAKAAKVQRSPRISGEDR------------SSPGNRTGNNGQIQLWQFLLEL 329
Query: 1005 LSDSFHSSCIT 1037
L+D CI+
Sbjct: 330 LTDKDARDCIS 340
>ref|NP_001033731.1| protein C-ets-1 isoform 2 [Mus musculus].
Length = 353
Score = 79.7 bits (195), Expect = 3e-15
Identities = 69/224 (30%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Frame = +3
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
T ++R+ +P DP W+ HVR W+ WAV E+ L VD F + G LC + K+ F
Sbjct: 57 TKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMSGAALCALGKECFLE 115
Query: 651 LTPSYNADILLSHLHYL-RETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWT 827
L P + DIL HL L +E P+ V+ A P + + + Y
Sbjct: 116 LAPDFVGDILWEHLEILQKEDVKPY----QVNGANPTYPESCYTSDYFISY-------GI 164
Query: 828 SHGHPTPQSKAAQPSPSTMP---------------KTEDQRPQL---DPYQ--------- 926
H P S+ ++PS T K E+ P + DP Q
Sbjct: 165 EHAQCVPPSEFSEPSFITESYQTLHPISSEELLSLKYENDYPSVILQDPLQTDTLQTDYF 224
Query: 927 -----ILGPTS--YRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
+L P + A+ GSG IQLWQFLLELL+D S I+
Sbjct: 225 AIKQEVLTPDNMCLGRASRGSGPIQLWQFLLELLTDKSCQSFIS 268
>ref|NP_035938.2| protein C-ets-1 isoform 1 [Mus musculus].
Length = 440
Score = 64.7 bits (156), Expect = 1e-10
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +3
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
T ++R+ +P DP W+ HVR W+ WAV E+ L VD F + G LC + K+ F
Sbjct: 57 TKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKF-CMSGAALCALGKECFLE 115
Query: 651 LTPSYNADILLSHLHYLRE 707
L P + DIL HL L++
Sbjct: 116 LAPDFVGDILWEHLEILQK 134
>ref|NP_035939.3| protein C-ets-2 [Mus musculus].
Length = 468
Score = 61.2 bits (147), Expect = 1e-09
Identities = 29/74 (39%), Positives = 44/74 (59%)
Frame = +3
Query: 480 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 659
+RR+ +P +P LWS V QWL WA E+ L +V++ F ++G+ LC + K+ F L P
Sbjct: 94 QRRLGIPKNPWLWSEQQVCQWLLWATNEFSLVNVNLHQF-GMNGQMLCNLGKERFLELAP 152
Query: 660 SYNADILLSHLHYL 701
+ DIL HL +
Sbjct: 153 DFVGDILWEHLEQM 166
>ref|NP_031987.3| transcription factor ETV6 [Mus musculus].
Length = 485
Score = 60.1 bits (144), Expect = 3e-09
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Frame = +3
Query: 450 HVPPPNMTTSERRVIVPA----DPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKE 617
H P + E + +P P WS D V QWL+WA E+ L ++ F+ ++GK
Sbjct: 36 HTVPRALRMEEDSIHLPTHLRLQPIYWSRDDVAQWLKWAENEFSLRPIESNKFE-MNGKA 94
Query: 618 LCKMTKDDFQRLTPSYNADI---LLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT 788
L +TK+DF+ +P ++ D+ LL H+ R++ + ++ P ++ +N
Sbjct: 95 LLLLTKEDFRYRSP-HSGDVLYELLQHILKQRKSRMLFSPFFPPGDSIHTKPEVLLHQNH 153
Query: 789 D---LPYEAPRRSAWTSHGHPTPQSKAAQP-SPST-----MPKTEDQRPQLDP 920
D PR A + H +P +P SP T P E QRPQ P
Sbjct: 154 DEDNCVQRTPRTPAESVHHNPPTIELLHRPRSPITTNHRPSPDPEQQRPQRSP 206
>ref|NP_038919.1| SAM pointed domain-containing Ets transcription factor [Mus
musculus].
Length = 325
Score = 54.7 bits (130), Expect = 1e-07
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Frame = +3
Query: 465 NMTTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDF 644
++ T+ + + + ADP WS +V++WL W +Y LP FQ + GKELC M+++ F
Sbjct: 123 DIETACKLLNITADPGDWSPGNVQKWLLWTEHQYRLPPAG-KAFQELGGKELCAMSEEQF 181
Query: 645 QRLTPSYNADILLSH------------------LHYLRETPLPHLTSDDVDKALQNSP 764
++ P D+L +H LHY T T +VD + P
Sbjct: 182 RQRAP-LGGDVLHAHLDIWKSAAWMKERTSPGTLHYCASTSEEGWTDGEVDSSCSGQP 238
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,315,011
Number of extensions: 1027717
Number of successful extensions: 4723
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4669
Number of HSP's successfully gapped: 8
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008135
(1037 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004440.1| transcriptional regulator ERG isoform 2 [Homo s... 594 e-170
Alignment gi|NP_891548.1| transcriptional regulator ERG isoform 1 [Homo s... 586 e-167
Alignment gi|NP_001230357.1| transcriptional regulator ERG isoform 3 [Hom... 580 e-166
Alignment gi|NP_001129626.1| transcriptional regulator ERG isoform 3 [Hom... 580 e-166
Alignment gi|NP_001230361.1| transcriptional regulator ERG isoform 6 [Hom... 538 e-153
Alignment gi|NP_001230358.1| transcriptional regulator ERG isoform 5 [Hom... 429 e-120
Alignment gi|NP_001129627.1| transcriptional regulator ERG isoform 4 [Hom... 415 e-116
Alignment gi|NP_002008.2| Friend leukemia integration 1 transcription fac... 332 4e-91
Alignment gi|NP_001161153.1| Friend leukemia integration 1 transcription ... 295 6e-80
Alignment gi|NP_001184226.1| GA-binding protein alpha chain [Homo sapiens]. 84 3e-16
>ref|NP_004440.1| transcriptional regulator ERG isoform 2 [Homo sapiens].
Length = 462
Score = 594 bits (1531), Expect = e-170
Identities = 286/307 (93%), Positives = 298/307 (97%)
Frame = +3
Query: 117 ASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQP 296
A+ IKEALSVVSEDQSLFECAYGTPHL AKT+MTASSS DYGQTSKMSPRVPQQDWLSQP
Sbjct: 9 AAHIKEALSVVSEDQSLFECAYGTPHL-AKTEMTASSSSDYGQTSKMSPRVPQQDWLSQP 67
Query: 297 PARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMTT 476
PARVTIKMECNP+QVNGSR+SP+ECS+AKGGKMVGSPD VGM+YGSYMEEKH+PPPNMTT
Sbjct: 68 PARVTIKMECNPSQVNGSRNSPDECSVAKGGKMVGSPDTVGMNYGSYMEEKHMPPPNMTT 127
Query: 477 SERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLT 656
+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDV+ILLFQNIDGKELCKMTKDDFQRLT
Sbjct: 128 NERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLT 187
Query: 657 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTSHG 836
PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYE PRRSAWT HG
Sbjct: 188 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEPPRRSAWTGHG 247
Query: 837 HPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELLSDS 1016
HPTPQSKAAQPSPST+PKTEDQRPQLDPYQILGPTS R ANPGSGQIQLWQFLLELLSDS
Sbjct: 248 HPTPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDS 307
Query: 1017 FHSSCIT 1037
+SSCIT
Sbjct: 308 SNSSCIT 314
>ref|NP_891548.1| transcriptional regulator ERG isoform 1 [Homo sapiens].
Length = 479
Score = 586 bits (1511), Expect = e-167
Identities = 289/332 (87%), Positives = 300/332 (90%), Gaps = 24/332 (7%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
MASTIKEALSVVSEDQSLFECAYGTPHL AKT+MTASSS DYGQTSKMSPRVPQQDWLSQ
Sbjct: 1 MASTIKEALSVVSEDQSLFECAYGTPHL-AKTEMTASSSSDYGQTSKMSPRVPQQDWLSQ 59
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMT 473
PPARVTIKMECNP+QVNGSR+SP+ECS+AKGGKMVGSPD VGM+YGSYMEEKH+PPPNMT
Sbjct: 60 PPARVTIKMECNPSQVNGSRNSPDECSVAKGGKMVGSPDTVGMNYGSYMEEKHMPPPNMT 119
Query: 474 TSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRL 653
T+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDV+ILLFQNIDGKELCKMTKDDFQRL
Sbjct: 120 TNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRL 179
Query: 654 TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT--------------- 788
TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT
Sbjct: 180 TPSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPE 239
Query: 789 ---------DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPT 941
DLPYE PRRSAWT HGHPTPQSKAAQPSPST+PKTEDQRPQLDPYQILGPT
Sbjct: 240 ATQRITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPT 299
Query: 942 SYRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
S R ANPGSGQIQLWQFLLELLSDS +SSCIT
Sbjct: 300 SSRLANPGSGQIQLWQFLLELLSDSSNSSCIT 331
>ref|NP_001230357.1| transcriptional regulator ERG isoform 3 [Homo sapiens].
Length = 486
Score = 580 bits (1496), Expect = e-166
Identities = 286/331 (86%), Positives = 298/331 (90%), Gaps = 24/331 (7%)
Frame = +3
Query: 117 ASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQP 296
A+ IKEALSVVSEDQSLFECAYGTPHL AKT+MTASSS DYGQTSKMSPRVPQQDWLSQP
Sbjct: 9 AAHIKEALSVVSEDQSLFECAYGTPHL-AKTEMTASSSSDYGQTSKMSPRVPQQDWLSQP 67
Query: 297 PARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMTT 476
PARVTIKMECNP+QVNGSR+SP+ECS+AKGGKMVGSPD VGM+YGSYMEEKH+PPPNMTT
Sbjct: 68 PARVTIKMECNPSQVNGSRNSPDECSVAKGGKMVGSPDTVGMNYGSYMEEKHMPPPNMTT 127
Query: 477 SERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLT 656
+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDV+ILLFQNIDGKELCKMTKDDFQRLT
Sbjct: 128 NERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLT 187
Query: 657 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT---------------- 788
PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT
Sbjct: 188 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEA 247
Query: 789 --------DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTS 944
DLPYE PRRSAWT HGHPTPQSKAAQPSPST+PKTEDQRPQLDPYQILGPTS
Sbjct: 248 TQRITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTS 307
Query: 945 YRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
R ANPGSGQIQLWQFLLELLSDS +SSCIT
Sbjct: 308 SRLANPGSGQIQLWQFLLELLSDSSNSSCIT 338
>ref|NP_001129626.1| transcriptional regulator ERG isoform 3 [Homo sapiens].
Length = 486
Score = 580 bits (1496), Expect = e-166
Identities = 286/331 (86%), Positives = 298/331 (90%), Gaps = 24/331 (7%)
Frame = +3
Query: 117 ASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQP 296
A+ IKEALSVVSEDQSLFECAYGTPHL AKT+MTASSS DYGQTSKMSPRVPQQDWLSQP
Sbjct: 9 AAHIKEALSVVSEDQSLFECAYGTPHL-AKTEMTASSSSDYGQTSKMSPRVPQQDWLSQP 67
Query: 297 PARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMTT 476
PARVTIKMECNP+QVNGSR+SP+ECS+AKGGKMVGSPD VGM+YGSYMEEKH+PPPNMTT
Sbjct: 68 PARVTIKMECNPSQVNGSRNSPDECSVAKGGKMVGSPDTVGMNYGSYMEEKHMPPPNMTT 127
Query: 477 SERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLT 656
+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDV+ILLFQNIDGKELCKMTKDDFQRLT
Sbjct: 128 NERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLT 187
Query: 657 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT---------------- 788
PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT
Sbjct: 188 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEA 247
Query: 789 --------DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTS 944
DLPYE PRRSAWT HGHPTPQSKAAQPSPST+PKTEDQRPQLDPYQILGPTS
Sbjct: 248 TQRITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTS 307
Query: 945 YRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
R ANPGSGQIQLWQFLLELLSDS +SSCIT
Sbjct: 308 SRLANPGSGQIQLWQFLLELLSDSSNSSCIT 338
>ref|NP_001230361.1| transcriptional regulator ERG isoform 6 [Homo sapiens].
Length = 317
Score = 538 bits (1386), Expect = e-153
Identities = 264/307 (85%), Positives = 275/307 (89%), Gaps = 24/307 (7%)
Frame = +3
Query: 117 ASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQP 296
A+ IKEALSVVSEDQSLFECAYGTPHL AKT+MTASSS DYGQTSKMSPRVPQQDWLSQP
Sbjct: 9 AAHIKEALSVVSEDQSLFECAYGTPHL-AKTEMTASSSSDYGQTSKMSPRVPQQDWLSQP 67
Query: 297 PARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKHVPPPNMTT 476
PARVTIKMECNP+QVNGSR+SP+ECS+AKGGKMVGSPD VGM+YGSYMEEKH+PPPNMTT
Sbjct: 68 PARVTIKMECNPSQVNGSRNSPDECSVAKGGKMVGSPDTVGMNYGSYMEEKHMPPPNMTT 127
Query: 477 SERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLT 656
+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDV+ILLFQNIDGKELCKMTKDDFQRLT
Sbjct: 128 NERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVNILLFQNIDGKELCKMTKDDFQRLT 187
Query: 657 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT---------------- 788
PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNT
Sbjct: 188 PSYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTGGAAFIFPNTSVYPEA 247
Query: 789 --------DLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTS 944
DLPYE PRRSAWT HGHPTPQSKAAQPSPST+PKTEDQRPQLDPYQILGPTS
Sbjct: 248 TQRITTRPDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTS 307
Query: 945 YRPANPG 965
R ANPG
Sbjct: 308 SRLANPG 314
>ref|NP_001230358.1| transcriptional regulator ERG isoform 5 [Homo sapiens].
Length = 363
Score = 429 bits (1102), Expect = e-120
Identities = 203/215 (94%), Positives = 209/215 (97%)
Frame = +3
Query: 393 MVGSPDAVGMSYGSYMEEKHVPPPNMTTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGL 572
MVGSPD VGM+YGSYMEEKH+PPPNMTT+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGL
Sbjct: 1 MVGSPDTVGMNYGSYMEEKHMPPPNMTTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGL 60
Query: 573 PDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPLPHLTSDDVDKAL 752
PDV+ILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPLPHLTSDDVDKAL
Sbjct: 61 PDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPLPHLTSDDVDKAL 120
Query: 753 QNSPRLMHARNTDLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQIL 932
QNSPRLMHARNTDLPYE PRRSAWT HGHPTPQSKAAQPSPST+PKTEDQRPQLDPYQIL
Sbjct: 121 QNSPRLMHARNTDLPYEPPRRSAWTGHGHPTPQSKAAQPSPSTVPKTEDQRPQLDPYQIL 180
Query: 933 GPTSYRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
GPTS R ANPGSGQIQLWQFLLELLSDS +SSCIT
Sbjct: 181 GPTSSRLANPGSGQIQLWQFLLELLSDSSNSSCIT 215
>ref|NP_001129627.1| transcriptional regulator ERG isoform 4 [Homo sapiens].
Length = 387
Score = 415 bits (1067), Expect = e-116
Identities = 203/239 (84%), Positives = 209/239 (87%), Gaps = 24/239 (10%)
Frame = +3
Query: 393 MVGSPDAVGMSYGSYMEEKHVPPPNMTTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGL 572
MVGSPD VGM+YGSYMEEKH+PPPNMTT+ERRVIVPADPTLWSTDHVRQWLEWAVKEYGL
Sbjct: 1 MVGSPDTVGMNYGSYMEEKHMPPPNMTTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGL 60
Query: 573 PDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPLPHLTSDDVDKAL 752
PDV+ILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPLPHLTSDDVDKAL
Sbjct: 61 PDVNILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETPLPHLTSDDVDKAL 120
Query: 753 QNSPRLMHARNT------------------------DLPYEAPRRSAWTSHGHPTPQSKA 860
QNSPRLMHARNT DLPYE PRRSAWT HGHPTPQSKA
Sbjct: 121 QNSPRLMHARNTGGAAFIFPNTSVYPEATQRITTRPDLPYEPPRRSAWTGHGHPTPQSKA 180
Query: 861 AQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
AQPSPST+PKTEDQRPQLDPYQILGPTS R ANPGSGQIQLWQFLLELLSDS +SSCIT
Sbjct: 181 AQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSSCIT 239
>ref|NP_002008.2| Friend leukemia integration 1 transcription factor isoform 1 [Homo
sapiens].
Length = 452
Score = 332 bits (850), Expect = 4e-91
Identities = 174/310 (56%), Positives = 220/310 (70%), Gaps = 2/310 (0%)
Frame = +3
Query: 114 MASTIKEALSVVSEDQSLFECAYGTPHLVAKTDMTASSSGDYGQTSKMSPRVPQQDWLSQ 293
M TIKEALSVVS+DQSLF+ AYG + K DMTAS S DYGQ K++P PQQ+W++Q
Sbjct: 1 MDGTIKEALSVVSDDQSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQ 60
Query: 294 PPARVTIKMECNPNQVNGSRSSPEECSMAKGGKMVGSPDAVGMSYGSYMEEKH-VPPPNM 470
P RV +K E + +NGSR SP +CS++K K+VG ++ M+Y SYM+EK+ PPPNM
Sbjct: 61 P-VRVNVKREYD--HMNGSRESPVDCSVSKCSKLVGGGESNPMNYNSYMDEKNGPPPPNM 117
Query: 471 TTSERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQR 650
TT+ERRVIVPADPTLW+ +HVRQWLEWA+KEY L ++D FQN+DGKELCKM K+DF R
Sbjct: 118 TTNERRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLR 177
Query: 651 LTPSYNADILLSHLHYLRETP-LPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWT 827
T YN ++LLSHL YLRE+ L + T+ D++ + S + D Y++ RR AW
Sbjct: 178 ATTLYNTEVLLSHLSYLRESSLLAYNTTSHTDQSSRLSVK------EDPSYDSVRRGAWG 231
Query: 828 SHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPANPGSGQIQLWQFLLELL 1007
++ + T+ K +QRPQ DPYQILGPTS R ANPGSGQIQLWQFLLELL
Sbjct: 232 NNMNSGLNKSPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELL 291
Query: 1008 SDSFHSSCIT 1037
SDS ++SCIT
Sbjct: 292 SDSANASCIT 301
>ref|NP_001161153.1| Friend leukemia integration 1 transcription factor isoform 2 [Homo
sapiens].
Length = 419
Score = 295 bits (754), Expect = 6e-80
Identities = 153/277 (55%), Positives = 196/277 (70%), Gaps = 2/277 (0%)
Frame = +3
Query: 213 MTASSSGDYGQTSKMSPRVPQQDWLSQPPARVTIKMECNPNQVNGSRSSPEECSMAKGGK 392
MTAS S DYGQ K++P PQQ+W++QP RV +K E + +NGSR SP +CS++K K
Sbjct: 1 MTASGSPDYGQPHKINPLPPQQEWINQP-VRVNVKREYD--HMNGSRESPVDCSVSKCSK 57
Query: 393 MVGSPDAVGMSYGSYMEEKH-VPPPNMTTSERRVIVPADPTLWSTDHVRQWLEWAVKEYG 569
+VG ++ M+Y SYM+EK+ PPPNMTT+ERRVIVPADPTLW+ +HVRQWLEWA+KEY
Sbjct: 58 LVGGGESNPMNYNSYMDEKNGPPPPNMTTNERRVIVPADPTLWTQEHVRQWLEWAIKEYS 117
Query: 570 LPDVDILLFQNIDGKELCKMTKDDFQRLTPSYNADILLSHLHYLRETP-LPHLTSDDVDK 746
L ++D FQN+DGKELCKM K+DF R T YN ++LLSHL YLRE+ L + T+ D+
Sbjct: 118 LMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLRESSLLAYNTTSHTDQ 177
Query: 747 ALQNSPRLMHARNTDLPYEAPRRSAWTSHGHPTPQSKAAQPSPSTMPKTEDQRPQLDPYQ 926
+ + S + D Y++ RR AW ++ + T+ K +QRPQ DPYQ
Sbjct: 178 SSRLSVK------EDPSYDSVRRGAWGNNMNSGLNKSPPLGGAQTISKNTEQRPQPDPYQ 231
Query: 927 ILGPTSYRPANPGSGQIQLWQFLLELLSDSFHSSCIT 1037
ILGPTS R ANPGSGQIQLWQFLLELLSDS ++SCIT
Sbjct: 232 ILGPTSSRLANPGSGQIQLWQFLLELLSDSANASCIT 268
>ref|NP_001184226.1| GA-binding protein alpha chain [Homo sapiens].
Length = 454
Score = 83.6 bits (205), Expect = 3e-16
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 2/188 (1%)
Frame = +3
Query: 480 ERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVDILLFQNIDGKELCKMTKDDFQRLTP 659
+ R+ +P DP WSTD V W+ W +KE+ + D+D+ NI G+ELC + ++DF + P
Sbjct: 177 QERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDIDLTTL-NISGRELCSLNQEDFFQRVP 235
Query: 660 SYNADILLSHLHYLRETPLPHLTSDDVDKALQNSPRLMHARNTDLPYEAPRRSAWTSHGH 839
+IL SHL LR+ L ++ D P + S ++
Sbjct: 236 --RGEILWSHLELLRKYVL-----------ASQEQQMNEIVTIDQPVQIIPASVQSA--- 279
Query: 840 PTPQSKAAQPSPSTMPKTEDQRPQLDPYQILGPTSYRPAN--PGSGQIQLWQFLLELLSD 1013
TP + S + K + + P +I G P N +GQIQLWQFLLELL+D
Sbjct: 280 -TPTTIKVINSSAKAAKVQ-RAP-----RISGEDRSSPGNRTGNNGQIQLWQFLLELLTD 332
Query: 1014 SFHSSCIT 1037
CI+
Sbjct: 333 KDARDCIS 340
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,026,288
Number of extensions: 1236808
Number of successful extensions: 5975
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 5901
Number of HSP's successfully gapped: 20
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008135
(1037 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 444 e-122
Sscrofa_Chr09 82 7e-13
>Sscrofa_Chr13
|| Length = 218635234
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Minus
Query: 130 aggaagcgttatctgttgtgagcgaggaccagtccctgtttgagtgcgcctacggcaccc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212156867 aggaagcgttatctgttgtgagcgaggaccagtccctgtttgagtgcgcctacggcaccc 212156808
Query: 190 cacatctggtggccaagacagacatgaccgcgtcctcctccggcgactatggacagacat 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212156807 cacatctggtggccaagacagacatgaccgcgtcctcctccggcgactatggacagacat 212156748
Query: 250 ccaagatgagcccacgcgtccctcagcaggactggctgtctcaacccccagccagggtca 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212156747 ccaagatgagcccacgcgtccctcagcaggactggctgtctcaacccccagccagggtca 212156688
Query: 310 ccatcaagatggaatgtaaccctaaccaggtgaatggctcaagg 353
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212156687 ccatcaagatggaatgtaaccctaaccaggtgaatggctcaagg 212156644
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 502 cagatcctacgctatggagtacggatcatgtccggcagtggctggagtgggcagtgaaag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212112407 cagatcctacgctatggagtacggatcatgtccggcagtggctggagtgggcagtgaaag 212112348
Query: 562 aatacggccttccagacgtcgacatcttattgttccagaatatcgatgggaaggagctgt 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212112347 aatacggccttccagacgtcgacatcttattgttccagaatatcgatgggaaggagctgt 212112288
Query: 622 gcaagatgaccaaagatgactttcagaggctcaccccgagctacaatgctgacatccttc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212112287 gcaagatgaccaaagatgactttcagaggctcaccccgagctacaatgctgacatccttc 212112228
Query: 682 tgtcacatctccactacctccgagaga 708
|||||||||||||||||||||||||||
Sbjct: 212112227 tgtcacatctccactacctccgagaga 212112201
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 351 aggagctcccccgaggagtgcagcatggccaagggcgggaagatggtgggcagcccggac 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212135312 aggagctcccccgaggagtgcagcatggccaagggcgggaagatggtgggcagcccggac 212135253
Query: 411 gccgtgggcatgagttacggcagctacatggaggagaagcacgtgccgcccccaaacatg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212135252 gccgtgggcatgagttacggcagctacatggaggagaagcacgtgccgcccccaaacatg 212135193
Query: 471 accaccagcgagcgccgggtcatcgtcccagcag 504
||||||||||||||||||||||||||||||||||
Sbjct: 212135192 accaccagcgagcgccgggtcatcgtcccagcag 212135159
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 1 gacttagcacaatctcatccgctctaaacaacctcatcaaaactactttctggtcagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212314547 gacttagcacaatctcatccgctctaaacaacctcatcaaaactactttctggtcagaga 212314606
Query: 61 gaagcaataattatcattaacatttattaacgatcaataaacttgatcgcattatggcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212314607 gaagcaataattatcattaacatttattaacgatcaataaacttgatcgcattatggcca 212314666
Query: 121 gcactattaagg 132
||||||||||||
Sbjct: 212314667 gcactattaagg 212314678
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 709 cacctcttccacatttgacttcagatgatgttgataaagccttacaaaactctccacggt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212111391 cacctcttccacatttgacttcagatgatgttgataaagccttacaaaactctccacggt 212111332
Query: 769 taatgcatgctagaaacacag 789
|||||||||||||||||||||
Sbjct: 212111331 taatgcatgctagaaacacag 212111311
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 785 cacagatttaccttatgaggcacccaggagatcggcctggaccagccacggccacccaac 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212100173 cacagatttaccttatgaggcacccaggagatcggcctggaccagccacggccacccaac 212100114
Query: 845 cccccagtcaaaag 858
||||||||||||||
Sbjct: 212100113 cccccagtcaaaag 212100100
Score = 137 bits (69), Expect = 1e-29
Identities = 75/77 (97%)
Strand = Plus / Minus
Query: 961 cagggagtggacagatccagctgtggcagtttctcctggagctcctgtcggacagcttcc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 212087250 cagggagtggacagatccagctgtggcagtttctcctggagctcctgtcggacagctcca 212087191
Query: 1021 actccagctgcatcacc 1037
|||||||||||||||||
Sbjct: 212087190 actccagctgcatcacc 212087174
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 857 agctgctcaaccatctccttccacaatgcccaagactgaagaccagcgtccccaactag 915
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212098920 agctgctcaaccatctccttccacaatgcccaagactgaagaccagcgtccccaactag 212098862
Score = 73.8 bits (37), Expect = 2e-10
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 913 tagatccttatcagattcttggaccgacnagttaccgccctgcaaacccagg 964
|||||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct: 212098183 tagatccttatcagattcttggaccgacaagtagccgccttgcaaacccagg 212098132
>Sscrofa_Chr09
|| Length = 153670197
Score = 81.8 bits (41), Expect = 7e-13
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 961 cagggagtggacagatccagctgtggcagtttctcctggagctcctgtcggacagcttcc 1020
||||||| || |||||||||||||||||||| ||||||||||| || ||||||||| |
Sbjct: 61816228 cagggagcggccagatccagctgtggcagttcctcctggagctactctcggacagcgcca 61816169
Query: 1021 actccagctgcatcacc 1037
|| ||||||||||||||
Sbjct: 61816168 acgccagctgcatcacc 61816152
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,536,650
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 10
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)