Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008140
(1036 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091505.1| zinc transporter ZIP14 precursor [Bos taurus]. 254 9e-68
Alignment gi|NP_001192559.1| zinc transporter ZIP8 [Bos taurus]. 126 3e-29
Alignment gi|XP_002688166.1| PREDICTED: solute carrier family 39, member ... 114 1e-25
Alignment gi|NP_001137564.1| zinc transporter ZIP6 [Bos taurus]. 64 2e-10
Alignment gi|NP_001192809.1| zinc transporter ZIP10 [Bos taurus]. 62 6e-10
Alignment gi|XP_002685551.1| PREDICTED: solute carrier family 39, member ... 62 6e-10
Alignment gi|NP_001070346.1| zinc transporter ZIP12 [Bos taurus]. 60 2e-09
Alignment gi|NP_001039532.1| zinc transporter ZIP4 precursor [Bos taurus]. 59 7e-09
>ref|NP_001091505.1| zinc transporter ZIP14 precursor [Bos taurus].
Length = 490
Score = 254 bits (649), Expect = 9e-68
Identities = 133/190 (70%), Positives = 149/190 (78%)
Frame = +1
Query: 226 SICIAVPEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVS 405
SI A EARAVSTGMP ISAASFLQ+LMHRYGEGDSL+LQQLK LLN L+VGV R N+S
Sbjct: 18 SIWTAASEARAVSTGMPTISAASFLQNLMHRYGEGDSLTLQQLKALLNHLDVGVGRGNIS 77
Query: 406 QSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXX 585
Q VQ RNLSTCFSSG+LFAAHNLS S+I EFQEFCPTILQQLDS+ACSS
Sbjct: 78 QPVQGPRNLSTCFSSGELFAAHNLSHQSQIGEREFQEFCPTILQQLDSRACSSENQENEE 137
Query: 586 XXXXXXGRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLL 765
GRPSSVEVWG+G L V++I+L SLLG V+P +K F+ R+L YFIAL+IGTL
Sbjct: 138 NEQTEEGRPSSVEVWGYGLLCVTVISLCSLLGASVVPFMKKTFYKRLLLYFIALAIGTLY 197
Query: 766 SNALFQLIPE 795
SNALFQLIPE
Sbjct: 198 SNALFQLIPE 207
>ref|NP_001192559.1| zinc transporter ZIP8 [Bos taurus].
Length = 461
Score = 126 bits (317), Expect = 3e-29
Identities = 67/168 (39%), Positives = 98/168 (58%)
Frame = +1
Query: 292 SFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQRNLSTCFSSGDLFAAH 471
+F +D++ +G SLS QL LL RL Q + + C S+ ++F+ H
Sbjct: 28 AFSEDVLSVFGANRSLSAAQLGRLLERLGAAPVEGAPEPG---QLHFNQCLSAAEIFSLH 84
Query: 472 NLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEVWGFGFLSV 651
S+ ++I F CP +LQQL+ C +PS EVWG+GFLSV
Sbjct: 85 GFSNVTQITSSNFSVICPAVLQQLNFHPCKERLKHKT--------KPSLSEVWGYGFLSV 136
Query: 652 SLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPE 795
++INLASLLG+++ P +K++F ++LTYF+ L+IGTL SNA+FQLIPE
Sbjct: 137 TIINLASLLGLVLTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIPE 184
>ref|XP_002688166.1| PREDICTED: solute carrier family 39, member 4-like, partial [Bos
taurus].
Length = 388
Score = 114 bits (285), Expect = 1e-25
Identities = 54/119 (45%), Positives = 78/119 (65%)
Frame = +1
Query: 439 CFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSS 618
C S+ ++F+ H S+ ++I F CP +LQQL+ C +PS
Sbjct: 1 CLSAAEIFSLHGFSNVTQITSSNFSVICPAVLQQLNFHPCKERLKHKT--------KPSL 52
Query: 619 VEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPE 795
EVWG+GFLSV++INLASLLG+++ P +K++F ++LTYF+ L+IGTL SNA+FQLIPE
Sbjct: 53 SEVWGYGFLSVTIINLASLLGLVLTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIPE 111
>ref|NP_001137564.1| zinc transporter ZIP6 [Bos taurus].
Length = 434
Score = 64.3 bits (155), Expect = 2e-10
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Frame = +1
Query: 493 IRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEV-WGFGFLSVSLINLA 669
+ EF CP I+ Q+D+++C + S+++ W GF+++S+I+
Sbjct: 7 LNATEFNYLCPAIINQIDTRSC--LIHTTSEKKAEIPPKTYSLQIAWVGGFIAISVISFL 64
Query: 670 SLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIP 792
SLLGV+++P + FF +L++ +AL++GTL +A L+P
Sbjct: 65 SLLGVILVPLMNRVFFKFLLSFLVALAVGTLSGDAFLHLLP 105
>ref|NP_001192809.1| zinc transporter ZIP10 [Bos taurus].
Length = 833
Score = 62.4 bits (150), Expect = 6e-10
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Frame = +1
Query: 439 CFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPS- 615
C + L H +S I F CP +L Q+DS+ C
Sbjct: 339 CLNVTQLLKYHGHRANSPISSDLFTYLCPALLYQIDSRLCIEHFDKLLVEDLNKDKNQVP 398
Query: 616 ------SVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNAL 777
W G +S+++I+L SLLGV+++P + F +LT+ +AL++GT+ +AL
Sbjct: 399 EDKANIGASAWICGIISITVISLLSLLGVILVPIINQGCFKFLLTFLVALAVGTMSGDAL 458
Query: 778 FQLIPEVQ 801
L+P Q
Sbjct: 459 LHLLPHSQ 466
>ref|XP_002685551.1| PREDICTED: solute carrier family 39, member 4-like [Bos taurus].
Length = 833
Score = 62.4 bits (150), Expect = 6e-10
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Frame = +1
Query: 439 CFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPS- 615
C + L H +S I F CP +L Q+DS+ C
Sbjct: 339 CLNVTQLLKYHGHRANSPISSDLFTYLCPALLYQIDSRLCIEHFDKLLVEDLNKDKNQVP 398
Query: 616 ------SVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNAL 777
W G +S+++I+L SLLGV+++P + F +LT+ +AL++GT+ +AL
Sbjct: 399 EDKANIGASAWICGIISITVISLLSLLGVILVPIINQGCFKFLLTFLVALAVGTMSGDAL 458
Query: 778 FQLIPEVQ 801
L+P Q
Sbjct: 459 LHLLPHSQ 466
>ref|NP_001070346.1| zinc transporter ZIP12 [Bos taurus].
Length = 654
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Frame = +1
Query: 436 TCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPS 615
TCFS+G L + S I +F++ P I+QQL S +C P+
Sbjct: 309 TCFSAGQLVNIFLQNKLSPISKEDFKQMSPGIIQQLLSCSCQLPQNQQAKI------APT 362
Query: 616 SVEVWGFGFLSVSLINLASLLG---VLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQL 786
++E +G+ ++V+L+ L S+LG +L C E + +L F+ L++GTL +AL L
Sbjct: 363 TLEKYGYSTVAVTLLTLGSMLGTTLILFHSCEEN--YRLILQLFVGLAVGTLSGDALLHL 420
Query: 787 IPEV 798
IP++
Sbjct: 421 IPQI 424
>ref|NP_001039532.1| zinc transporter ZIP4 precursor [Bos taurus].
Length = 653
Score = 58.9 bits (141), Expect = 7e-09
Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Frame = +1
Query: 277 AISAASFLQDLMHRY--GEGDSLSLQQLKTLLNRLNVG---------------------- 384
A+ + D + R E +++L +L L+ RL +G
Sbjct: 202 ALPTPQYFVDFVFRQHSSENPNITLDELAALMERLGLGGATEPHDSHSDDSPLGKGQGPV 261
Query: 385 -VSRANVSQSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACS 561
++ N S S + + C S+ D+ A + +S+ + + ++ P +LQQ S ACS
Sbjct: 262 PLAAPNSSASAWD----TLCLSAQDIMAVYGMSEQAGVTPDDWARLSPALLQQQLSGACS 317
Query: 562 SXXXXXXXXXXXXXGRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSR-VLTYF 738
+ S E + +G L+ LI L SLLG+L+L C + S ++ F
Sbjct: 318 ------PQPTLPTQDQLSQAERYLYGSLATLLICLCSLLGLLLLSCASCSTTSHYIIQAF 371
Query: 739 IALSIGTLLSNALFQLIPEV 798
+++++G L +AL L+P+V
Sbjct: 372 LSMAVGALTGDALLHLMPKV 391
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,422,621
Number of extensions: 961626
Number of successful extensions: 4063
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4009
Number of HSP's successfully gapped: 8
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008140
(1036 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543250.2| PREDICTED: similar to solute carrier family 39 ... 281 5e-76
Alignment gi|XP_849535.1| PREDICTED: similar to solute carrier family 39 ... 247 1e-65
Alignment gi|XP_535673.2| PREDICTED: similar to solute carrier family 39 ... 124 2e-28
Alignment gi|XP_537282.2| PREDICTED: similar to solute carrier family 39 ... 78 1e-14
Alignment gi|XP_848350.1| PREDICTED: similar to solute carrier family 39 ... 62 1e-09
Alignment gi|XP_535173.2| PREDICTED: similar to solute carrier family 39 ... 62 1e-09
Alignment gi|XP_536012.2| PREDICTED: similar to solute carrier family 39 ... 61 2e-09
Alignment gi|XP_539217.2| PREDICTED: similar to solute carrier family 39 ... 59 1e-08
>ref|XP_543250.2| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 14 isoform 1 [Canis familiaris].
Length = 490
Score = 281 bits (720), Expect = 5e-76
Identities = 145/190 (76%), Positives = 159/190 (83%)
Frame = +1
Query: 226 SICIAVPEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVS 405
S+ AVPEA A+STG P I+A SFLQDL+HRYGEGDSL+LQQLK LLN L+VGV R NV+
Sbjct: 18 SLWSAVPEAHALSTGTPTINAVSFLQDLLHRYGEGDSLTLQQLKALLNHLDVGVGRDNVT 77
Query: 406 QSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXX 585
++ QRNLSTCFSSGDLFAAHNLS+ SRI EFQEFCPTILQQLDS+ACSS
Sbjct: 78 HTLHGQRNLSTCFSSGDLFAAHNLSNQSRIGRNEFQEFCPTILQQLDSRACSSENQENEE 137
Query: 586 XXXXXXGRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLL 765
G+PS++EVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTL
Sbjct: 138 DEQIEEGKPSAIEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLF 197
Query: 766 SNALFQLIPE 795
SNALFQLIPE
Sbjct: 198 SNALFQLIPE 207
>ref|XP_849535.1| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 14 isoform 3 [Canis familiaris].
Length = 490
Score = 247 bits (631), Expect = 1e-65
Identities = 125/190 (65%), Positives = 149/190 (78%)
Frame = +1
Query: 226 SICIAVPEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVS 405
S+ AVPEA A+STG P I+A SFLQDL+HRYGEGDSL+LQQLK LLN L+VGV R NV+
Sbjct: 18 SLWSAVPEAHALSTGTPTINAVSFLQDLLHRYGEGDSLTLQQLKALLNHLDVGVGRDNVT 77
Query: 406 QSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXX 585
++ QRNLSTCFSSGDLFAAHNLS+ SRI EFQEFCPTILQQLDS+ACSS
Sbjct: 78 HTLHGQRNLSTCFSSGDLFAAHNLSNQSRIGRNEFQEFCPTILQQLDSRACSSENQENEE 137
Query: 586 XXXXXXGRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLL 765
G+PS++EVWG+G L V++I+L SL+G V+P +K F+ R+L YFIAL+IGTL
Sbjct: 138 DEQIEEGKPSAIEVWGYGLLCVTVISLCSLMGASVVPFMKKTFYKRLLLYFIALAIGTLY 197
Query: 766 SNALFQLIPE 795
SNALFQLIPE
Sbjct: 198 SNALFQLIPE 207
>ref|XP_535673.2| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 8 [Canis familiaris].
Length = 636
Score = 124 bits (310), Expect = 2e-28
Identities = 66/176 (37%), Positives = 102/176 (57%)
Frame = +1
Query: 268 GMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQRNLSTCFS 447
G A A +F +D++ +G SLS QL LL +L + + + + + C S
Sbjct: 195 GAAAGPALAFSEDVLSVFGANRSLSAAQLAHLLEQLGAAPTHGVAEPA---RLHFNQCLS 251
Query: 448 SGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEV 627
+ ++F+ H S+ ++I F CP +LQQL+ C +PS EV
Sbjct: 252 AEEIFSLHGFSNTTQISSSNFSVICPAVLQQLNFHPCEDRHKHKT--------KPSISEV 303
Query: 628 WGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPE 795
WG+G LSV++INLASLLG+++ P +K++F ++LT+F+ L+IGTL SNA+FQLIPE
Sbjct: 304 WGYGLLSVTIINLASLLGLILTPLIKKSYFPKILTFFVGLAIGTLFSNAIFQLIPE 359
>ref|XP_537282.2| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 6 [Canis familiaris].
Length = 735
Score = 78.2 bits (191), Expect = 1e-14
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Frame = +1
Query: 376 NVGVSRANVSQSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQA 555
+V R S N CF++ L +H + + + EF CP I+ Q+D+++
Sbjct: 222 SVSEPRKGFMYSRNTNENTQECFNASKLLTSHGMGIQTMLNATEFNYLCPAIINQIDARS 281
Query: 556 CSSXXXXXXXXXXXXXGRPSSVEV-WGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLT 732
C + S+++ W GF+++S+I+ SLLGV+++P + FF +L+
Sbjct: 282 C--LIHTTSEKKAEIPPKTYSLQIAWVGGFIAISIISFLSLLGVILVPLMNRVFFKFLLS 339
Query: 733 YFIALSIGTLLSNALFQLIP 792
+ +AL++GTL +A L+P
Sbjct: 340 FLVALAVGTLSGDAFLHLLP 359
>ref|XP_848350.1| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 12 isoform 2 [Canis familiaris].
Length = 688
Score = 61.6 bits (148), Expect = 1e-09
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Frame = +1
Query: 343 LQQLKTLLNRLNVGVSRANVSQSVQEQRNLST------CFSSGDLFAAHNLSDHSRIRGP 504
+ QL+ N L + +N+S S+ ++ + + CFS+G L + S I
Sbjct: 271 IHQLQRKQNNLTIYDWGSNLSVSMDQESHDGSISWDESCFSAGQLVEIFLQNSLSPISKE 330
Query: 505 EFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEVWGFGFLSVSLINLASLLGV 684
+F+ P I+QQL S +C P+++E +G+ ++V+L+ L S+LG
Sbjct: 331 DFKRMSPGIIQQLLSCSCQLPKDQQAKLP------PTTLEKYGYSTVAVALLTLGSMLGT 384
Query: 685 LVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPEV 798
++ + +L F+ L++GTL +AL L+P+V
Sbjct: 385 TLILFHSCENYRLILQLFVGLAVGTLTGDALLHLLPQV 422
>ref|XP_535173.2| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 12 isoform 1 [Canis familiaris].
Length = 652
Score = 61.6 bits (148), Expect = 1e-09
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Frame = +1
Query: 343 LQQLKTLLNRLNVGVSRANVSQSVQEQRNLST------CFSSGDLFAAHNLSDHSRIRGP 504
+ QL+ N L + +N+S S+ ++ + + CFS+G L + S I
Sbjct: 271 IHQLQRKQNNLTIYDWGSNLSVSMDQESHDGSISWDESCFSAGQLVEIFLQNSLSPISKE 330
Query: 505 EFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEVWGFGFLSVSLINLASLLGV 684
+F+ P I+QQL S +C P+++E +G+ ++V+L+ L S+LG
Sbjct: 331 DFKRMSPGIIQQLLSCSCQLPKDQQAKLP------PTTLEKYGYSTVAVALLTLGSMLGT 384
Query: 685 LVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPEV 798
++ + +L F+ L++GTL +AL L+P+V
Sbjct: 385 TLILFHSCENYRLILQLFVGLAVGTLTGDALLHLLPQV 422
>ref|XP_536012.2| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 10 [Canis familiaris].
Length = 511
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Frame = +1
Query: 427 NLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXG 606
N C + L + +S I F CP +L Q+DS+ C
Sbjct: 13 NFLQCLNVTQLLKYYGHGANSPISPDLFTYLCPALLYQIDSRLCIEHFDRLLVEDLNKDK 72
Query: 607 RPS-------SVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLL 765
W G +S+++I+L SLLGV+++P + F +LT+ +AL++GT+
Sbjct: 73 NQVPEDKANIGASAWICGIISITVISLLSLLGVILVPIINQGCFKFLLTFLVALAVGTMS 132
Query: 766 SNALFQLIPEVQ 801
+AL L+P Q
Sbjct: 133 GDALLHLLPHSQ 144
>ref|XP_539217.2| PREDICTED: similar to solute carrier family 39 (zinc transporter),
member 4 isoform 2 [Canis familiaris].
Length = 650
Score = 58.5 bits (140), Expect = 1e-08
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 25/205 (12%)
Frame = +1
Query: 259 VSTG--MPAISAASFLQDLMHRY--GEGDSLSLQQLKTLLNRLNVGV------------- 387
VS+G + A+ + D + R GE +++L +L+ L+ RL VG
Sbjct: 192 VSSGSCLRALPTPQYFVDFVFRQHGGETPNITLAELEALMQRLGVGRVADTDHSDHDHLR 251
Query: 388 SRANVSQSV-----QEQRNL--STCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLD 546
+RAN V +L + C S+ ++ A + LS+ + + + + P +LQQ
Sbjct: 252 TRANYQGPVPLTTLNSSSSLWDTVCLSASEVMAVYGLSEQAGVTPESWAQLSPALLQQQL 311
Query: 547 SQACSSXXXXXXXXXXXXXGRPSSVEVWGFGFLSVSLINLASLLGVLVLPC-TEKAFFSR 723
S AC+ + S E + +G L+ LI L ++ G+L+L C T +A
Sbjct: 312 SGACN------PQPRNPTQDQLSQAERYLYGSLATLLICLCAIFGLLLLTCATCRAASHY 365
Query: 724 VLTYFIALSIGTLLSNALFQLIPEV 798
V+ F+++++G L +A+ L P+V
Sbjct: 366 VIQTFLSMAVGALTGDAILHLTPKV 390
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,661,077
Number of extensions: 968729
Number of successful extensions: 3982
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3969
Number of HSP's successfully gapped: 8
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008140
(1036 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925732.2| PREDICTED: zinc transporter ZIP14 [Sus scrof... 305 4e-83
Alignment gi|XP_003129343.2| PREDICTED: zinc transporter ZIP8-like [Sus s... 115 3e-26
Alignment gi|XP_003356460.1| PREDICTED: zinc transporter ZIP6-like [Sus s... 66 3e-11
Alignment gi|XP_001925395.2| PREDICTED: zinc transporter ZIP4-like [Sus s... 60 2e-09
Alignment gi|XP_003130776.1| PREDICTED: zinc transporter ZIP12 isoform 2 ... 57 1e-08
Alignment gi|XP_003130775.1| PREDICTED: zinc transporter ZIP12 isoform 1 ... 57 1e-08
>ref|XP_001925732.2| PREDICTED: zinc transporter ZIP14 [Sus scrofa].
Length = 490
Score = 305 bits (780), Expect = 4e-83
Identities = 156/190 (82%), Positives = 166/190 (87%)
Frame = +1
Query: 226 SICIAVPEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVS 405
SICIAVPEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVS
Sbjct: 18 SICIAVPEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVS 77
Query: 406 QSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXX 585
QSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSS
Sbjct: 78 QSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSKNQENEE 137
Query: 586 XXXXXXGRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLL 765
GRPSSVEVWG+G L V++I+L SL+G V+P +K F+ R+L YFIAL+IGTL
Sbjct: 138 NKKTEEGRPSSVEVWGYGLLCVTVISLCSLMGASVVPFMKKTFYKRLLLYFIALAIGTLY 197
Query: 766 SNALFQLIPE 795
SNALFQLIPE
Sbjct: 198 SNALFQLIPE 207
>ref|XP_003129343.2| PREDICTED: zinc transporter ZIP8-like [Sus scrofa].
Length = 514
Score = 115 bits (289), Expect = 3e-26
Identities = 55/123 (44%), Positives = 81/123 (65%)
Frame = +1
Query: 427 NLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXG 606
+L+ C S+ ++F+ H S+ ++I F CP +LQQL+ C
Sbjct: 123 HLTLCLSAEEIFSLHGFSNATQITSSNFSVICPAVLQQLNFHPCKDRPKHKT-------- 174
Query: 607 RPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQL 786
+PS EVWG+GFLSV++INLASLLG+++ P +K++F ++LTYF+ L+IGTL SNA+FQL
Sbjct: 175 KPSLSEVWGYGFLSVTVINLASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQL 234
Query: 787 IPE 795
IPE
Sbjct: 235 IPE 237
>ref|XP_003356460.1| PREDICTED: zinc transporter ZIP6-like [Sus scrofa].
Length = 434
Score = 66.2 bits (160), Expect = 3e-11
Identities = 32/101 (31%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = +1
Query: 493 IRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEV-WGFGFLSVSLINLA 669
+ EF CP I+ Q+D+++C + S+++ W GF+++S+I+
Sbjct: 7 LNATEFNYLCPAIINQIDTRSC--LIHTTSDKKAEIPPKTYSLQIAWVGGFIAISIISFL 64
Query: 670 SLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIP 792
SLLGV+++P + FF +L++ +AL++GTL +AL L+P
Sbjct: 65 SLLGVILVPLMNRVFFKFLLSFLVALAVGTLSGDALLHLLP 105
>ref|XP_001925395.2| PREDICTED: zinc transporter ZIP4-like [Sus scrofa].
Length = 649
Score = 60.1 bits (144), Expect = 2e-09
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 25/199 (12%)
Frame = +1
Query: 277 AISAASFLQDLMHRY--GEGDSLSLQQLKTLLNRLNVG-VSRANVSQSVQ---------- 417
A+ + D + R GE +++L +L L+ RL VG VS + S Q
Sbjct: 197 ALPTPQYFVDFVFREHSGETPNITLAELAALMQRLGVGGVSEPHGDHSEQGHLGKEASQP 256
Query: 418 -----EQRNLST------CFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSS 564
N S+ C S+GD+ A + LS+ + + + + P +LQQ S ACS
Sbjct: 257 GPVPPASPNSSSSVWDTMCLSAGDVMAVYGLSEQAGVTPEAWAQLSPALLQQQLSGACS- 315
Query: 565 XXXXXXXXXXXXXGRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTE-KAFFSRVLTYFI 741
+ S E + +G L+ LI L S+ G+L+L C A V+ F+
Sbjct: 316 -----PQPMHPTQDQLSQSERYLYGSLATLLICLCSIFGLLLLACASCSAATHYVIQTFL 370
Query: 742 ALSIGTLLSNALFQLIPEV 798
+++G L +AL L P+V
Sbjct: 371 GMAVGALTGDALLHLTPKV 389
>ref|XP_003130776.1| PREDICTED: zinc transporter ZIP12 isoform 2 [Sus scrofa].
Length = 691
Score = 57.4 bits (137), Expect = 1e-08
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Frame = +1
Query: 436 TCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPS 615
TCFS+ L + S I +F++ P I+QQL S +C P+
Sbjct: 309 TCFSARQLVEIFLQNRLSPISKEDFKQMSPGIIQQLLSCSCQLPQDQAAELS------PT 362
Query: 616 SVEVWGFGFLSVSLINLASLLG---VLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQL 786
++E +G+ ++V+L+ L S+LG +L C E + +L F+ L++GTL +AL L
Sbjct: 363 TLEKYGYSTVAVTLLTLGSMLGTTLILFHSCEEN--YRLILQLFVGLAVGTLSGDALLHL 420
Query: 787 IPEV 798
IP++
Sbjct: 421 IPQI 424
>ref|XP_003130775.1| PREDICTED: zinc transporter ZIP12 isoform 1 [Sus scrofa].
Length = 654
Score = 57.4 bits (137), Expect = 1e-08
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Frame = +1
Query: 436 TCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPS 615
TCFS+ L + S I +F++ P I+QQL S +C P+
Sbjct: 309 TCFSARQLVEIFLQNRLSPISKEDFKQMSPGIIQQLLSCSCQLPQDQAAELS------PT 362
Query: 616 SVEVWGFGFLSVSLINLASLLG---VLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQL 786
++E +G+ ++V+L+ L S+LG +L C E + +L F+ L++GTL +AL L
Sbjct: 363 TLEKYGYSTVAVTLLTLGSMLGTTLILFHSCEEN--YRLILQLFVGLAVGTLSGDALLHL 420
Query: 787 IPEV 798
IP++
Sbjct: 421 IPQI 424
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,653,510
Number of extensions: 638969
Number of successful extensions: 2440
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2419
Number of HSP's successfully gapped: 6
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008140
(1036 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128624.1| zinc transporter ZIP14 isoform a [Mus muscul... 263 1e-70
Alignment gi|NP_001128623.1| zinc transporter ZIP14 isoform a [Mus muscul... 263 1e-70
Alignment gi|NP_659057.2| zinc transporter ZIP14 isoform b [Mus musculus]. 230 2e-60
Alignment gi|NP_001128622.1| zinc transporter ZIP8 [Mus musculus]. 131 8e-31
Alignment gi|NP_001128621.1| zinc transporter ZIP8 [Mus musculus]. 131 8e-31
Alignment gi|NP_080504.3| zinc transporter ZIP8 [Mus musculus]. 131 8e-31
Alignment gi|NP_631882.2| zinc transporter ZIP6 precursor [Mus musculus]. 82 7e-16
Alignment gi|NP_766241.2| zinc transporter ZIP10 precursor [Mus musculus]. 61 2e-09
Alignment gi|NP_001012305.1| zinc transporter ZIP12 [Mus musculus]. 58 1e-08
Alignment gi|NP_082340.1| zinc transporter ZIP4 precursor [Mus musculus]. 54 2e-07
>ref|NP_001128624.1| zinc transporter ZIP14 isoform a [Mus musculus].
Length = 489
Score = 263 bits (673), Expect = 1e-70
Identities = 135/184 (73%), Positives = 151/184 (82%)
Frame = +1
Query: 244 PEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQ 423
P+ A S G+P +SA SFL+DLM RYG+ DSL+L QLK+LL+ L+VGV R NVSQ +
Sbjct: 24 PQTHASSAGLPPLSATSFLEDLMDRYGKNDSLTLTQLKSLLDHLHVGVGRDNVSQPKEGP 83
Query: 424 RNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXX 603
RNLSTCFSSGDLFAAHNLS+ S+I EFQEFCPTILQQLDSQAC+S
Sbjct: 84 RNLSTCFSSGDLFAAHNLSERSQIGASEFQEFCPTILQQLDSQACTSENQKSEENEQTEE 143
Query: 604 GRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 783
G+PS++EVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ
Sbjct: 144 GKPSAIEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 203
Query: 784 LIPE 795
LIPE
Sbjct: 204 LIPE 207
>ref|NP_001128623.1| zinc transporter ZIP14 isoform a [Mus musculus].
Length = 489
Score = 263 bits (673), Expect = 1e-70
Identities = 135/184 (73%), Positives = 151/184 (82%)
Frame = +1
Query: 244 PEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQ 423
P+ A S G+P +SA SFL+DLM RYG+ DSL+L QLK+LL+ L+VGV R NVSQ +
Sbjct: 24 PQTHASSAGLPPLSATSFLEDLMDRYGKNDSLTLTQLKSLLDHLHVGVGRDNVSQPKEGP 83
Query: 424 RNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXX 603
RNLSTCFSSGDLFAAHNLS+ S+I EFQEFCPTILQQLDSQAC+S
Sbjct: 84 RNLSTCFSSGDLFAAHNLSERSQIGASEFQEFCPTILQQLDSQACTSENQKSEENEQTEE 143
Query: 604 GRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 783
G+PS++EVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ
Sbjct: 144 GKPSAIEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 203
Query: 784 LIPE 795
LIPE
Sbjct: 204 LIPE 207
>ref|NP_659057.2| zinc transporter ZIP14 isoform b [Mus musculus].
Length = 489
Score = 230 bits (586), Expect = 2e-60
Identities = 115/184 (62%), Positives = 141/184 (76%)
Frame = +1
Query: 244 PEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQ 423
P+ A S G+P +SA SFL+DLM RYG+ DSL+L QLK+LL+ L+VGV R NVSQ +
Sbjct: 24 PQTHASSAGLPPLSATSFLEDLMDRYGKNDSLTLTQLKSLLDHLHVGVGRDNVSQPKEGP 83
Query: 424 RNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXX 603
RNLSTCFSSGDLFAAHNLS+ S+I EFQEFCPTILQQLDSQAC+S
Sbjct: 84 RNLSTCFSSGDLFAAHNLSERSQIGASEFQEFCPTILQQLDSQACTSENQKSEENEQTEE 143
Query: 604 GRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 783
G+PS++EVWG+GFL V++I+L SL+G V+P +K F+ R+L YFIAL+IGTL SNALFQ
Sbjct: 144 GKPSAIEVWGYGFLCVTVISLCSLMGASVVPFMKKTFYKRLLLYFIALAIGTLYSNALFQ 203
Query: 784 LIPE 795
LIPE
Sbjct: 204 LIPE 207
>ref|NP_001128622.1| zinc transporter ZIP8 [Mus musculus].
Length = 462
Score = 131 bits (330), Expect = 8e-31
Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 1/181 (0%)
Frame = +1
Query: 256 AVSTGMPAISAA-SFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQRNL 432
A S G P+ +F +D++ +G SLS QL LL RL + + Q +
Sbjct: 15 ATSLGHPSEGPELAFSEDVLSVFGANRSLSAAQLGRLLERLGAASQQGALDLG---QLHF 71
Query: 433 STCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRP 612
+ C S+ D+F+ H S+ ++I F CP ILQQL+ C +P
Sbjct: 72 NQCLSAEDIFSLHGFSNVTQITSSNFSAICPAILQQLNFHPCEDLRKHN--------AKP 123
Query: 613 SSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIP 792
S EVWG+GFLSV++INLASLLG+++ P +K++F ++LTYF+ L+IGTL SNA+FQLIP
Sbjct: 124 SLSEVWGYGFLSVTIINLASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIP 183
Query: 793 E 795
E
Sbjct: 184 E 184
>ref|NP_001128621.1| zinc transporter ZIP8 [Mus musculus].
Length = 462
Score = 131 bits (330), Expect = 8e-31
Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 1/181 (0%)
Frame = +1
Query: 256 AVSTGMPAISAA-SFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQRNL 432
A S G P+ +F +D++ +G SLS QL LL RL + + Q +
Sbjct: 15 ATSLGHPSEGPELAFSEDVLSVFGANRSLSAAQLGRLLERLGAASQQGALDLG---QLHF 71
Query: 433 STCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRP 612
+ C S+ D+F+ H S+ ++I F CP ILQQL+ C +P
Sbjct: 72 NQCLSAEDIFSLHGFSNVTQITSSNFSAICPAILQQLNFHPCEDLRKHN--------AKP 123
Query: 613 SSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIP 792
S EVWG+GFLSV++INLASLLG+++ P +K++F ++LTYF+ L+IGTL SNA+FQLIP
Sbjct: 124 SLSEVWGYGFLSVTIINLASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIP 183
Query: 793 E 795
E
Sbjct: 184 E 184
>ref|NP_080504.3| zinc transporter ZIP8 [Mus musculus].
Length = 462
Score = 131 bits (330), Expect = 8e-31
Identities = 73/181 (40%), Positives = 105/181 (58%), Gaps = 1/181 (0%)
Frame = +1
Query: 256 AVSTGMPAISAA-SFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQRNL 432
A S G P+ +F +D++ +G SLS QL LL RL + + Q +
Sbjct: 15 ATSLGHPSEGPELAFSEDVLSVFGANRSLSAAQLGRLLERLGAASQQGALDLG---QLHF 71
Query: 433 STCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRP 612
+ C S+ D+F+ H S+ ++I F CP ILQQL+ C +P
Sbjct: 72 NQCLSAEDIFSLHGFSNVTQITSSNFSAICPAILQQLNFHPCEDLRKHN--------AKP 123
Query: 613 SSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIP 792
S EVWG+GFLSV++INLASLLG+++ P +K++F ++LTYF+ L+IGTL SNA+FQLIP
Sbjct: 124 SLSEVWGYGFLSVTIINLASLLGLILTPLIKKSYFPKILTYFVGLAIGTLFSNAIFQLIP 183
Query: 793 E 795
E
Sbjct: 184 E 184
>ref|NP_631882.2| zinc transporter ZIP6 precursor [Mus musculus].
Length = 765
Score = 82.0 bits (201), Expect = 7e-16
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 12/158 (7%)
Frame = +1
Query: 355 KTLLNRLNVGVSRANVSQSVQEQR-----------NLSTCFSSGDLFAAHNLSDHSRIRG 501
K+ + RL+ ++R ++SV E R N+ CF++ L +H +S + +
Sbjct: 235 KSRVGRLS-RLARKKSNESVSEPRKSFMYSRNTNDNIQECFNTTKLLTSHGMSIQALLNA 293
Query: 502 PEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEV-WGFGFLSVSLINLASLL 678
EF CP I+ Q+D++AC + S+++ W GF+++S+I+ SLL
Sbjct: 294 TEFNYLCPAIINQIDARAC--LIHTASEKKAEIPPKTYSLQIAWLGGFIAISIISFLSLL 351
Query: 679 GVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIP 792
GV+++P + FF +L++ +AL++GTL +AL L+P
Sbjct: 352 GVILVPLMNRVFFKFLLSFLVALAVGTLSGDALLHLLP 389
>ref|NP_766241.2| zinc transporter ZIP10 precursor [Mus musculus].
Length = 833
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Frame = +1
Query: 439 CFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGR--- 609
C + L L +S I F CP +L Q+DS+ C
Sbjct: 339 CLNVTQLLKHFGLGPNSPISPDLFTYLCPALLYQIDSRLCIEHFDKLLVEDLNKDKTLVP 398
Query: 610 ----PSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNAL 777
W G +S+++I+L SLLGV+++P + F +LT+ +AL++GT+ +AL
Sbjct: 399 EDKTNIGASAWICGIISITVISLLSLLGVILVPIINQGCFKFLLTFLVALAVGTMSGDAL 458
Query: 778 FQLIPEVQ 801
L+P Q
Sbjct: 459 LHLLPHSQ 466
>ref|NP_001012305.1| zinc transporter ZIP12 [Mus musculus].
Length = 689
Score = 57.8 bits (138), Expect = 1e-08
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Frame = +1
Query: 439 CFSSGDLFAAHNLSDHSR--IRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRP 612
CFS+ L L +HS I +F++ P I+QQL S +C P
Sbjct: 309 CFSARQLVEIF-LQNHSSLSISKEDFKQLSPGIIQQLLSCSCQMPKDQQAKPP------P 361
Query: 613 SSVEVWGFGFLSVSLINLASLLG---VLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 783
+++E +G+ ++V+L+ L S+LG VL C E +S +L F+ L++GTL +AL
Sbjct: 362 TTLEKYGYSTVAVTLLTLGSMLGTALVLFHSCEEN--YSLILQLFVGLAVGTLSGDALLH 419
Query: 784 LIPEV 798
LIP+V
Sbjct: 420 LIPQV 424
>ref|NP_082340.1| zinc transporter ZIP4 precursor [Mus musculus].
Length = 660
Score = 54.3 bits (129), Expect = 2e-07
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = +1
Query: 439 CFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSS 618
C S+ D+ A + LS+ + + + + P ++QQ S ACS + S
Sbjct: 280 CLSAKDIMAVYGLSEEAGVSPQAWAQLTPALVQQQLSGACS------PYPTIRIQDQLSQ 333
Query: 619 VEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSR-VLTYFIALSIGTLLSNALFQLIPE 795
E + +G L+ LI L ++ G+L+L C + + + ++ F++L++G L +AL LIP+
Sbjct: 334 TERYLYGSLATLLICLCAVFGLLLLTCAKCSTATHYIMQTFLSLAVGALTGDALLHLIPK 393
Query: 796 V 798
V
Sbjct: 394 V 394
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,268,527
Number of extensions: 797401
Number of successful extensions: 3133
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3101
Number of HSP's successfully gapped: 11
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008140
(1036 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056174.2| zinc transporter ZIP14 isoform b [Homo sapiens]. 279 3e-75
Alignment gi|NP_001128626.1| zinc transporter ZIP14 isoform c [Homo sapie... 244 9e-65
Alignment gi|NP_001128625.1| zinc transporter ZIP14 isoform a [Homo sapie... 244 9e-65
Alignment gi|NP_001121903.1| zinc transporter ZIP14 isoform a [Homo sapie... 244 9e-65
Alignment gi|NP_001128619.1| zinc transporter ZIP8 isoform b [Homo sapien... 127 2e-29
Alignment gi|NP_001128618.1| zinc transporter ZIP8 isoform a [Homo sapien... 127 2e-29
Alignment gi|NP_071437.3| zinc transporter ZIP8 isoform a [Homo sapiens]. 127 2e-29
Alignment gi|NP_001128620.1| zinc transporter ZIP8 isoform c [Homo sapien... 113 3e-25
Alignment gi|NP_036451.3| zinc transporter ZIP6 isoform 1 [Homo sapiens]. 76 6e-14
Alignment gi|NP_001092876.1| zinc transporter ZIP6 isoform 2 [Homo sapien... 65 1e-10
>ref|NP_056174.2| zinc transporter ZIP14 isoform b [Homo sapiens].
Length = 492
Score = 279 bits (714), Expect = 3e-75
Identities = 145/184 (78%), Positives = 153/184 (83%)
Frame = +1
Query: 244 PEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQ 423
PEA A S G PAISAASFLQDL+HRYGEGDSL+LQQLK LLN L+VGV R NV+Q VQ
Sbjct: 26 PEAHASSLGAPAISAASFLQDLIHRYGEGDSLTLQQLKALLNHLDVGVGRGNVTQHVQGH 85
Query: 424 RNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXX 603
RNLSTCFSSGDLF AHN S+ SRI E QEFCPTILQQLDS+AC+S
Sbjct: 86 RNLSTCFSSGDLFTAHNFSEQSRIGSSELQEFCPTILQQLDSRACTSENQENEENEQTEE 145
Query: 604 GRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 783
GRPS+VEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ
Sbjct: 146 GRPSAVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 205
Query: 784 LIPE 795
LIPE
Sbjct: 206 LIPE 209
>ref|NP_001128626.1| zinc transporter ZIP14 isoform c [Homo sapiens].
Length = 481
Score = 244 bits (623), Expect = 9e-65
Identities = 125/184 (67%), Positives = 142/184 (77%)
Frame = +1
Query: 244 PEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQ 423
PEA A S G PAISAASFLQDL+HRYGEGDSL+LQQLK LLN L+VGV R NV+Q VQ
Sbjct: 26 PEAHASSLGAPAISAASFLQDLIHRYGEGDSLTLQQLKALLNHLDVGVGRGNVTQHVQGH 85
Query: 424 RNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXX 603
RNLSTCFSSGDLF AHN S+ SRI E QEFCPTILQQLDS+AC+S
Sbjct: 86 RNLSTCFSSGDLFTAHNFSEQSRIGSSELQEFCPTILQQLDSRACTSENQENEENEQTEE 145
Query: 604 GRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 783
GRPS+VEVWG+G L V++I+L SLLG V+P +K F+ R+L YFIAL+IGTL SNALFQ
Sbjct: 146 GRPSAVEVWGYGLLCVTVISLCSLLGASVVPFMKKTFYKRLLLYFIALAIGTLYSNALFQ 205
Query: 784 LIPE 795
LIPE
Sbjct: 206 LIPE 209
>ref|NP_001128625.1| zinc transporter ZIP14 isoform a [Homo sapiens].
Length = 492
Score = 244 bits (623), Expect = 9e-65
Identities = 125/184 (67%), Positives = 142/184 (77%)
Frame = +1
Query: 244 PEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQ 423
PEA A S G PAISAASFLQDL+HRYGEGDSL+LQQLK LLN L+VGV R NV+Q VQ
Sbjct: 26 PEAHASSLGAPAISAASFLQDLIHRYGEGDSLTLQQLKALLNHLDVGVGRGNVTQHVQGH 85
Query: 424 RNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXX 603
RNLSTCFSSGDLF AHN S+ SRI E QEFCPTILQQLDS+AC+S
Sbjct: 86 RNLSTCFSSGDLFTAHNFSEQSRIGSSELQEFCPTILQQLDSRACTSENQENEENEQTEE 145
Query: 604 GRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 783
GRPS+VEVWG+G L V++I+L SLLG V+P +K F+ R+L YFIAL+IGTL SNALFQ
Sbjct: 146 GRPSAVEVWGYGLLCVTVISLCSLLGASVVPFMKKTFYKRLLLYFIALAIGTLYSNALFQ 205
Query: 784 LIPE 795
LIPE
Sbjct: 206 LIPE 209
>ref|NP_001121903.1| zinc transporter ZIP14 isoform a [Homo sapiens].
Length = 492
Score = 244 bits (623), Expect = 9e-65
Identities = 125/184 (67%), Positives = 142/184 (77%)
Frame = +1
Query: 244 PEARAVSTGMPAISAASFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQ 423
PEA A S G PAISAASFLQDL+HRYGEGDSL+LQQLK LLN L+VGV R NV+Q VQ
Sbjct: 26 PEAHASSLGAPAISAASFLQDLIHRYGEGDSLTLQQLKALLNHLDVGVGRGNVTQHVQGH 85
Query: 424 RNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXX 603
RNLSTCFSSGDLF AHN S+ SRI E QEFCPTILQQLDS+AC+S
Sbjct: 86 RNLSTCFSSGDLFTAHNFSEQSRIGSSELQEFCPTILQQLDSRACTSENQENEENEQTEE 145
Query: 604 GRPSSVEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQ 783
GRPS+VEVWG+G L V++I+L SLLG V+P +K F+ R+L YFIAL+IGTL SNALFQ
Sbjct: 146 GRPSAVEVWGYGLLCVTVISLCSLLGASVVPFMKKTFYKRLLLYFIALAIGTLYSNALFQ 205
Query: 784 LIPE 795
LIPE
Sbjct: 206 LIPE 209
>ref|NP_001128619.1| zinc transporter ZIP8 isoform b [Homo sapiens].
Length = 444
Score = 127 bits (318), Expect = 2e-29
Identities = 67/168 (39%), Positives = 104/168 (61%)
Frame = +1
Query: 292 SFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQRNLSTCFSSGDLFAAH 471
+F +D++ +G SLS QL+ LL ++ SR V + Q + + C ++ ++F+ H
Sbjct: 28 AFSEDVLSVFGANLSLSAAQLQHLLEQMGAA-SRVGVPEP--GQLHFNQCLTAEEIFSLH 84
Query: 472 NLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEVWGFGFLSV 651
S+ ++I +F CP +LQQL+ C RPS EVWG+GFLSV
Sbjct: 85 GFSNATQITSSKFSVICPAVLQQLNFHPCEDRPKHKT--------RPSHSEVWGYGFLSV 136
Query: 652 SLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPE 795
++INLASLLG+++ P +K++F ++LT+F+ L+IGTL SNA+FQLIPE
Sbjct: 137 TIINLASLLGLILTPLIKKSYFPKILTFFVGLAIGTLFSNAIFQLIPE 184
>ref|NP_001128618.1| zinc transporter ZIP8 isoform a [Homo sapiens].
Length = 460
Score = 127 bits (318), Expect = 2e-29
Identities = 67/168 (39%), Positives = 104/168 (61%)
Frame = +1
Query: 292 SFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQRNLSTCFSSGDLFAAH 471
+F +D++ +G SLS QL+ LL ++ SR V + Q + + C ++ ++F+ H
Sbjct: 28 AFSEDVLSVFGANLSLSAAQLQHLLEQMGAA-SRVGVPEP--GQLHFNQCLTAEEIFSLH 84
Query: 472 NLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEVWGFGFLSV 651
S+ ++I +F CP +LQQL+ C RPS EVWG+GFLSV
Sbjct: 85 GFSNATQITSSKFSVICPAVLQQLNFHPCEDRPKHKT--------RPSHSEVWGYGFLSV 136
Query: 652 SLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPE 795
++INLASLLG+++ P +K++F ++LT+F+ L+IGTL SNA+FQLIPE
Sbjct: 137 TIINLASLLGLILTPLIKKSYFPKILTFFVGLAIGTLFSNAIFQLIPE 184
>ref|NP_071437.3| zinc transporter ZIP8 isoform a [Homo sapiens].
Length = 460
Score = 127 bits (318), Expect = 2e-29
Identities = 67/168 (39%), Positives = 104/168 (61%)
Frame = +1
Query: 292 SFLQDLMHRYGEGDSLSLQQLKTLLNRLNVGVSRANVSQSVQEQRNLSTCFSSGDLFAAH 471
+F +D++ +G SLS QL+ LL ++ SR V + Q + + C ++ ++F+ H
Sbjct: 28 AFSEDVLSVFGANLSLSAAQLQHLLEQMGAA-SRVGVPEP--GQLHFNQCLTAEEIFSLH 84
Query: 472 NLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEVWGFGFLSV 651
S+ ++I +F CP +LQQL+ C RPS EVWG+GFLSV
Sbjct: 85 GFSNATQITSSKFSVICPAVLQQLNFHPCEDRPKHKT--------RPSHSEVWGYGFLSV 136
Query: 652 SLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPE 795
++INLASLLG+++ P +K++F ++LT+F+ L+IGTL SNA+FQLIPE
Sbjct: 137 TIINLASLLGLILTPLIKKSYFPKILTFFVGLAIGTLFSNAIFQLIPE 184
>ref|NP_001128620.1| zinc transporter ZIP8 isoform c [Homo sapiens].
Length = 393
Score = 113 bits (283), Expect = 3e-25
Identities = 53/119 (44%), Positives = 79/119 (66%)
Frame = +1
Query: 439 CFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSS 618
C ++ ++F+ H S+ ++I +F CP +LQQL+ C RPS
Sbjct: 7 CLTAEEIFSLHGFSNATQITSSKFSVICPAVLQQLNFHPCEDRPKHKT--------RPSH 58
Query: 619 VEVWGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIPE 795
EVWG+GFLSV++INLASLLG+++ P +K++F ++LT+F+ L+IGTL SNA+FQLIPE
Sbjct: 59 SEVWGYGFLSVTIINLASLLGLILTPLIKKSYFPKILTFFVGLAIGTLFSNAIFQLIPE 117
>ref|NP_036451.3| zinc transporter ZIP6 isoform 1 [Homo sapiens].
Length = 755
Score = 75.9 bits (185), Expect = 6e-14
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
Frame = +1
Query: 376 NVGVSRANVSQSVQEQRNLSTCFSSGDLFAAHNLSDHSRIRGPEFQEFCPTILQQLDSQA 555
+V R S N CF++ L +H + + EF CP I+ Q+D+++
Sbjct: 243 SVSEPRKGFMYSRNTNENPQECFNASKLLTSHGMGIQVPLNATEFNYLCPAIINQIDARS 302
Query: 556 CSSXXXXXXXXXXXXXGRPSSVEV-WGFGFLSVSLINLASLLGVLVLPCTEKAFFSRVLT 732
C + S+++ W GF+++S+I+ SLLGV+++P + FF +L+
Sbjct: 303 C---LIHTSEKKAEIPPKTYSLQIAWVGGFIAISIISFLSLLGVILVPLMNRVFFKFLLS 359
Query: 733 YFIALSIGTLLSNALFQLIP 792
+ +AL++GTL +A L+P
Sbjct: 360 FLVALAVGTLSGDAFLHLLP 379
>ref|NP_001092876.1| zinc transporter ZIP6 isoform 2 [Homo sapiens].
Length = 433
Score = 64.7 bits (156), Expect = 1e-10
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Frame = +1
Query: 493 IRGPEFQEFCPTILQQLDSQACSSXXXXXXXXXXXXXGRPSSVEV-WGFGFLSVSLINLA 669
+ EF CP I+ Q+D+++C + S+++ W GF+++S+I+
Sbjct: 7 LNATEFNYLCPAIINQIDARSC---LIHTSEKKAEIPPKTYSLQIAWVGGFIAISIISFL 63
Query: 670 SLLGVLVLPCTEKAFFSRVLTYFIALSIGTLLSNALFQLIP 792
SLLGV+++P + FF +L++ +AL++GTL +A L+P
Sbjct: 64 SLLGVILVPLMNRVFFKFLLSFLVALAVGTLSGDAFLHLLP 104
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,961,787
Number of extensions: 950132
Number of successful extensions: 3746
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3695
Number of HSP's successfully gapped: 18
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008140
(1036 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 611 e-172
>Sscrofa_Chr14
|| Length = 153851969
Score = 611 bits (308), Expect = e-172
Identities = 383/414 (92%), Gaps = 1/414 (0%)
Strand = Plus / Plus
Query: 624 agtgtggggctttggtttcctcagtgtctcactgattaacctggcctctctcctgggagt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7107089 agtgtggggctttggtttcctcagtgtctcactgattaacctggcctctctcctgggagt 7107148
Query: 684 cctcgtcctgccgtgcacagagaaagcatttttcagccgtgtgctcacttacttcatcgc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7107149 cctcgtcctgccgtgcacagagaaagcatttttcagccgtgtgctcacttacttcatcgc 7107208
Query: 744 cctgtccattggaacgctgctctctaatgcgctcttccagctcatcccagaggtgcagta 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7107209 cctgtccattggaacgctgctctctaatgcgctcttccagctcatcccagaggtgcagta 7107268
Query: 804 gaatagaaccctgcgcgtcctctctnnnnnnnnnnnnnnnnnnnnnaccctgtgctc-aa 862
||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 7107269 gaatagaaccctgcgcgtcctctctccccggggcgcccccgcccccaccctgtgctcaaa 7107328
Query: 863 ggcacctgacagctgccacctgaaacattaacctttccctcatgtcaagggacgccaatg 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7107329 ggcacctgacagctgccacctgaaacattaacctttccctcatgtcaagggacgccaatg 7107388
Query: 923 acttctgcctctggatctcaagggctccttttgttcctggggcacccagtttgcctctgg 982
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 7107389 acttctgcctctggatctcaagggctcctttcgttcctggggcaccaggtttgcctctgg 7107448
Query: 983 cctctttcagggatgtcnagtgcaaggtgcttaacatttgccccctgtctcggg 1036
|||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 7107449 cctcttcaggggatgtcaggtgcaaggtgcttagcatttgccccctgtctcggg 7107502
Score = 557 bits (281), Expect = e-156
Identities = 281/281 (100%)
Strand = Plus / Plus
Query: 158 caggttcacctgtcaccatgaagccgctgcacccagctctccctcacctcttcctgctga 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103653 caggttcacctgtcaccatgaagccgctgcacccagctctccctcacctcttcctgctga 7103712
Query: 218 ctctactcagcatatgcatagctgttcccgaggcgcgcgctgtgtccaccgggatgcctg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103713 ctctactcagcatatgcatagctgttcccgaggcgcgcgctgtgtccaccgggatgcctg 7103772
Query: 278 ccatcagcgcagcctctttcctgcaggacctcatgcaccgttacggggaaggtgacagcc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103773 ccatcagcgcagcctctttcctgcaggacctcatgcaccgttacggggaaggtgacagcc 7103832
Query: 338 tcagcctgcagcagctcaagaccctgctcaaccgcctcaatgtgggagtgagccgggcca 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103833 tcagcctgcagcagctcaagaccctgctcaaccgcctcaatgtgggagtgagccgggcca 7103892
Query: 398 acgtctcccagtctgtgcaagaacagaggaacctctcaacg 438
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103893 acgtctcccagtctgtgcaagaacagaggaacctctcaacg 7103933
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 438 gtgcttcagttctggagacctcttcgctgcccacaacctcagcgaccattctcgaattag 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7105847 gtgcttcagttctggagacctcttcgctgcccacaacctcagcgaccattctcgaattag 7105906
Query: 498 aggacctgagttccaggagttctgccccaccatcctccagcagctcgattcccaggcctg 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7105907 aggacctgagttccaggagttctgccccaccatcctccagcagctcgattcccaggcctg 7105966
Query: 558 ctcctctaagaaccaagagaacgaggagaacaagaagacggaagaggggaggcccagctc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7105967 ctcctctaagaaccaagagaacgaggagaacaagaagacggaagaggggaggcccagctc 7106026
Query: 618 agttgaag 625
||||||||
Sbjct: 7106027 agttgaag 7106034
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 20 tcagggcacgcgggctgcctgcgctggcgcgccgacctagctacgctgtctctgccgctg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7073549 tcagggcacgcgggctgcctgcgctggcgcgccgacctagctacgctgtctctgccgctg 7073608
Query: 80 ctgcagccactgccgttgcgggctgctcgagggcctggcttgtgagggtgctcggggcca 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7073609 ctgcagccactgccgttgcgggctgctcgagggcctggcttgtgagggtgctcggggcca 7073668
Query: 140 ggtgtgtccgcccagcttcaggt 162
|||||||||||||||||||||||
Sbjct: 7073669 ggtgtgtccgcccagcttcaggt 7073691
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,770,736
Number of extensions: 163
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 5
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)