Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008150
(1720 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777181.1| dnaJ homolog subfamily C member 3 precursor [Bo... 887 0.0
Alignment gi|NP_001192905.1| dnaJ homolog subfamily C member 7 [Bos tauru... 154 2e-37
Alignment gi|XP_002696071.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C... 120 4e-27
Alignment gi|NP_776957.2| dnaJ homolog subfamily B member 6 [Bos taurus]. 63 7e-10
Alignment gi|NP_001017946.1| dnaJ homolog subfamily B member 12 [Bos taur... 63 9e-10
Alignment gi|NP_001015637.1| dnaJ homolog subfamily A member 1 [Bos tauru... 61 4e-09
Alignment gi|XP_002700026.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A... 61 4e-09
Alignment gi|NP_001029389.1| tetratricopeptide repeat protein 1 [Bos taur... 60 6e-09
Alignment gi|NP_001030569.1| stress-induced-phosphoprotein 1 [Bos taurus]. 59 1e-08
Alignment gi|XP_001252102.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A... 59 1e-08
>ref|NP_777181.1| dnaJ homolog subfamily C member 3 precursor [Bos taurus].
Length = 504
Score = 887 bits (2291), Expect = 0.0
Identities = 448/499 (89%), Positives = 457/499 (91%)
Frame = +3
Query: 129 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHXXXXXXXXXXXXXXXXXSQF 308
MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKH SQF
Sbjct: 1 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF 60
Query: 309 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGK 488
HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGK
Sbjct: 61 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGK 120
Query: 489 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKI 668
LDEAEDDFKKVLKSNPSENEEKEAQSQL+KSDEMQRLRSQALDAFESSD+TAAITFLDKI
Sbjct: 121 LDEAEDDFKKVLKSNPSENEEKEAQSQLVKSDEMQRLRSQALDAFESSDFTAAITFLDKI 180
Query: 669 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 848
LEVCVWDAELRELRAECFIKEGEPRKAISDLKA+SKLKNDNTEAFYKISTLYY+LGDHEL
Sbjct: 181 LEVCVWDAELRELRAECFIKEGEPRKAISDLKASSKLKNDNTEAFYKISTLYYELGDHEL 240
Query: 849 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPN 1028
SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI++GRYTDA SKYESVMKTEP
Sbjct: 241 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIKEGRYTDAISKYESVMKTEPG 300
Query: 1029 VAEYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAI 1208
V EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYL+EEMYDEAI
Sbjct: 301 VHEYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLIEEMYDEAI 360
Query: 1209 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 1388
QDYETAQEHNENDQQIREGLEKAQRLLKQSQ+RDYYKILGVKRNAKKQEIIKAYRKLALQ
Sbjct: 361 QDYETAQEHNENDQQIREGLEKAQRLLKQSQRRDYYKILGVKRNAKKQEIIKAYRKLALQ 420
Query: 1389 WHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFH 1568
WHPDNFQN VLSDPEMRKKFDDGEDPLDAESQQ GGGG+PFH
Sbjct: 421 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQ-GGGGNPFH 479
Query: 1569 RSWNSWQGFKPFSSGGAFR 1625
RSWNSWQGF PFSSGG FR
Sbjct: 480 RSWNSWQGFSPFSSGGPFR 498
>ref|NP_001192905.1| dnaJ homolog subfamily C member 7 [Bos taurus].
Length = 494
Score = 154 bits (390), Expect = 2e-37
Identities = 112/413 (27%), Positives = 186/413 (45%), Gaps = 2/413 (0%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +GK + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDTFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +AQ + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAQQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 171 YAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACVACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQD 1214
+ + SK K +AI C+ ++++ + A RA+ YL E Y+EA++D
Sbjct: 291 KTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYLDTEQYEEAVRD 350
Query: 1215 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 1394
YE + E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL H
Sbjct: 351 YEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHH 409
Query: 1395 PDNFQ--NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
PD + +LSDP+ + ++D G+D LD E G
Sbjct: 410 PDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 461
Score = 50.4 bits (119), Expect = 5e-06
Identities = 49/266 (18%), Positives = 104/266 (39%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G+ R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+LD + + +K + +
Sbjct: 87 QSVRLDDTFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVIEYE 146
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
+ AE + + ++ P + I E C + + EA V S++
Sbjct: 147 KIAETDFEKRDFRKVVFCMDRALEYAPACHRFKILKAE----CLAMLGRYPEAQSVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
>ref|XP_002696071.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 7 [Bos taurus].
Length = 403
Score = 120 bits (301), Expect = 4e-27
Identities = 88/346 (25%), Positives = 150/346 (43%), Gaps = 25/346 (7%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G+ R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV------- 923
+ +L + + + LG+ + + L+LD + + +K
Sbjct: 87 QSVRLDDTFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVIEYE 146
Query: 924 ----------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSK 1055
K L E + ++G Y A Y + +PN + +
Sbjct: 147 KIAETDFEKRDFRKNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLY 206
Query: 1056 ERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEH 1235
SK K +AI C+ ++++ + A RA+ YL E Y+EA++DYE +
Sbjct: 207 CNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYLDTEQYEEAVRDYEKVYQ- 265
Query: 1236 NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ-- 1409
E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL HPD
Sbjct: 266 TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGA 325
Query: 1410 NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
+ +LSDP+ + ++D G+D LD E G
Sbjct: 326 SAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 370
>ref|NP_776957.2| dnaJ homolog subfamily B member 6 [Bos taurus].
Length = 242
Score = 63.2 bits (152), Expect = 7e-10
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +3
Query: 1308 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPE 1487
DYY++LGV+R+A ++I KAYRKLAL+WHPD +N VLSD +
Sbjct: 3 DYYEVLGVQRHASAEDIKKAYRKLALKWHPD--KNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 1488 MRKKFDD-GEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFSSGGAFRS 1628
R +D G++ L+ GGGGGS F PF G FR+
Sbjct: 61 KRDIYDRYGKEGLNG----GGGGGSHFD---------SPFEFGFTFRN 95
>ref|NP_001017946.1| dnaJ homolog subfamily B member 12 [Bos taurus].
Length = 370
Score = 62.8 bits (151), Expect = 9e-10
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Frame = +3
Query: 1221 TAQEHNENDQQIREGL--EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 1394
TA + E + +G E+ + + Q +DYY+ILGV R A +++ KAYRKLAL++H
Sbjct: 79 TASANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRKLALKFH 138
Query: 1395 PDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFHRS 1574
PD VLS+PE RK++D D ++ G G G FHR
Sbjct: 139 PDK----NHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDDKGQAARHGHGHGD-FHRG 193
Query: 1575 WNS----WQGFKPFSSGGAFRSN 1631
+ + F F GG SN
Sbjct: 194 FEADISPEDLFNMFFGGGFPSSN 216
>ref|NP_001015637.1| dnaJ homolog subfamily A member 1 [Bos taurus].
Length = 397
Score = 60.8 bits (146), Expect = 4e-09
Identities = 35/84 (41%), Positives = 45/84 (53%)
Frame = +3
Query: 1311 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEM 1490
YY +LGVK NA ++E+ KAYRKLAL++HPD N VLSD +
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN------EGEKFKQISQAYEVLSDAKK 60
Query: 1491 RKKFDDGEDPLDAESQQGGGGGSP 1562
R+ +D G + E GGG GSP
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP 84
>ref|XP_002700026.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A, member 1-like [Bos
taurus].
Length = 397
Score = 60.8 bits (146), Expect = 4e-09
Identities = 35/84 (41%), Positives = 45/84 (53%)
Frame = +3
Query: 1311 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEM 1490
YY +LGVK NA ++E+ KAYRKLAL++HPD N VLSD +
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN------EGEKFKQISQAYEVLSDAKK 60
Query: 1491 RKKFDDGEDPLDAESQQGGGGGSP 1562
R+ +D G + E GGG GSP
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP 84
>ref|NP_001029389.1| tetratricopeptide repeat protein 1 [Bos taurus].
Length = 292
Score = 60.1 bits (144), Expect = 6e-09
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Frame = +3
Query: 933 NKLIESAEELIRDGRYTDATSKYESVMKTEPNVAE------YTIRSKERICHCFSKDEKP 1094
++L E E + G Y +A S Y ++T P+ + ++ R+ R+ K EK
Sbjct: 117 SRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAARM-----KQEKK 171
Query: 1095 VEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEHNENDQQIREGLEK 1274
AI CS+ +Q+ P + A+ RAE Y + DEA++DY++ E + + Q RE +
Sbjct: 172 EMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMR 231
Query: 1275 AQRLLKQSQKRDYYKILG 1328
+ +++ +R ++LG
Sbjct: 232 LPKQIEERNERLKEEMLG 249
Score = 55.5 bits (132), Expect = 1e-07
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Frame = +3
Query: 333 DNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDDF 512
D + + RA + K + A+ D +K I+L + A L+R L K KLDEA +D+
Sbjct: 153 DRSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDY 212
Query: 513 KKVLKSNPSENEEKEAQSQLIK--SDEMQRLRSQAL 614
K +L+ +PS ++ +EA +L K + +RL+ + L
Sbjct: 213 KSILEKDPSVHQAREACMRLPKQIEERNERLKEEML 248
>ref|NP_001030569.1| stress-induced-phosphoprotein 1 [Bos taurus].
Length = 543
Score = 58.9 bits (141), Expect = 1e-08
Identities = 58/288 (20%), Positives = 126/288 (43%), Gaps = 24/288 (8%)
Frame = +3
Query: 483 GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL--DAFESSDYTAAITF 656
G +DE E+ P + + E + + ++ Q LR + L +A++ D+ A+
Sbjct: 188 GSMDEEEEVATPPPPPPPKKETKPEPMEEDLPENKKQALREKELGNEAYKKKDFDTALKH 247
Query: 657 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 836
DK ++ + +A + ++G+ + + A ++ +N E + +I+ Y ++G
Sbjct: 248 YDKAKDLDPTNMTYITNQAAVYFEKGDYGQCRELCEKAIEVGRENREDYRQIAKAYARIG 307
Query: 837 D--------------HELSLSEVR--ECLKLDQDHKRCFAHYKQVKKLNKLIESAE---- 956
+ + SL+E R + LK Q ++ +++ +N + E
Sbjct: 308 NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKG 367
Query: 957 -ELIRDGRYTDATSKYESVMKTEPNVAE-YTIRSKERICHCFSKDEKPVEAIRVCSEVLQ 1130
E + G Y A Y +K P A+ Y+ R+ C++K + A++ C E +Q
Sbjct: 368 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA-----CYTKLLEFQLALKDCEECIQ 422
Query: 1131 VEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEHNENDQQIREGLEK 1274
+EP + +A A + Y +A+ Y+ A + + N ++ +G ++
Sbjct: 423 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSNCKEAADGYQR 470
>ref|XP_001252102.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily A, member 1 [Bos taurus].
Length = 397
Score = 58.9 bits (141), Expect = 1e-08
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = +3
Query: 1311 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEM 1490
YY +LGVK NA ++E+ KAYRKLAL++HPD N VLS+ +
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN------EGEKFKQISQAYEVLSNAKK 60
Query: 1491 RKKFDDGEDPLDAESQQGGGGGSP 1562
R+ +D G + E GGG GSP
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP 84
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,571,475
Number of extensions: 1152424
Number of successful extensions: 5661
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 5571
Number of HSP's successfully gapped: 38
Length of query: 573
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 465
Effective length of database: 14,107,870
Effective search space: 6560159550
Effective search space used: 6560159550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008150
(1720 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534166.2| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 846 0.0
Alignment gi|XP_537639.2| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 152 1e-36
Alignment gi|XP_860828.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 149 8e-36
Alignment gi|XP_860857.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 149 1e-35
Alignment gi|XP_860665.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 134 2e-31
Alignment gi|XP_860728.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 134 3e-31
Alignment gi|XP_860699.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 82 2e-15
Alignment gi|XP_860799.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 73 7e-13
Alignment gi|XP_860765.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 73 7e-13
Alignment gi|XP_860632.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 73 7e-13
>ref|XP_534166.2| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 3
[Canis familiaris].
Length = 495
Score = 846 bits (2185), Expect = 0.0
Identities = 430/486 (88%), Positives = 439/486 (90%), Gaps = 3/486 (0%)
Frame = +3
Query: 177 FLLVLVDL---QYEGAECGVNADVEKHXXXXXXXXXXXXXXXXXSQFHAAVDGDPDNYIA 347
FL V V+L + GAECGVNADVEKH SQFHAAVDGDPDNYIA
Sbjct: 5 FLQVSVNLFLLLFLGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA 64
Query: 348 YYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 527
YYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK
Sbjct: 65 YYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 124
Query: 528 SNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELREL 707
SNPSENEEKEAQSQ++KSDEMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELREL
Sbjct: 125 SNPSENEEKEAQSQIVKSDEMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELREL 184
Query: 708 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 887
RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ
Sbjct: 185 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 244
Query: 888 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERIC 1067
DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP V+EYTIRSKERIC
Sbjct: 245 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPTVSEYTIRSKERIC 304
Query: 1068 HCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEHNEND 1247
HCFSKDEKPVEAIR+CSEVLQ+EPDNVNALKDRAEAYL+EEMYDEAIQDYETAQEHNEND
Sbjct: 305 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 364
Query: 1248 QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXX 1427
QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN
Sbjct: 365 QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 424
Query: 1428 XXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFS 1607
VLSDPEMRKKFDDGEDPLDAESQQ GGGG+PFHRSWNSWQGF PFS
Sbjct: 425 KAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQ-GGGGNPFHRSWNSWQGFNPFS 483
Query: 1608 SGGAFR 1625
SGG FR
Sbjct: 484 SGGPFR 489
>ref|XP_537639.2| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 2 [Canis familiaris].
Length = 494
Score = 152 bits (383), Expect = 1e-36
Identities = 110/413 (26%), Positives = 185/413 (44%), Gaps = 2/413 (0%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +GK + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +A + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAHQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 171 FAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQD 1214
+ + SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++D
Sbjct: 291 KTNAKLYCNRGTVNSKLRKLDDAIEDCTSAVKLDATYIKAYLRRAQCYMDTEQYEEAVRD 350
Query: 1215 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 1394
YE + E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL H
Sbjct: 351 YEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHH 409
Query: 1395 PDNFQ--NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
PD + +LSDP+ + ++D G+D LD E G
Sbjct: 410 PDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 461
Score = 52.8 bits (125), Expect = 1e-06
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G+ R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+L DHK AH ++ K N +I
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL--DHKNAQAH-QEFKNANAVI 143
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
E + D D K M A R K C + + EA V S++
Sbjct: 144 EYEKIAETDFEKRD-FRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
>ref|XP_860828.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 10 [Canis familiaris].
Length = 438
Score = 149 bits (376), Expect = 8e-36
Identities = 108/408 (26%), Positives = 182/408 (44%), Gaps = 2/408 (0%)
Frame = +3
Query: 330 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDD 509
P N Y RA + +GK + AL D + + L F L+ G L G A
Sbjct: 3 PKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRS 62
Query: 510 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILEVCVWD 689
F++ L+ +++ +A + ++ + A FE D+ + +D+ LE
Sbjct: 63 FQRALEL---DHKNAQAHQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALEFAPAC 119
Query: 690 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 869
+ L+AEC G +A S ++ + N +A Y Y E ++ +
Sbjct: 120 HRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQ 179
Query: 870 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIR 1049
L++ DH++ + K L E + ++G Y A Y + +PN + +
Sbjct: 180 ALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAK 239
Query: 1050 SKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQ 1229
SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++DYE
Sbjct: 240 LYCNRGTVNSKLRKLDDAIEDCTSAVKLDATYIKAYLRRAQCYMDTEQYEEAVRDYEKVY 299
Query: 1230 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 1409
+ E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL HPD
Sbjct: 300 Q-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHS 358
Query: 1410 --NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
+ +LSDP+ + ++D G+D LD E G
Sbjct: 359 GASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 405
>ref|XP_860857.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 11 [Canis familiaris].
Length = 485
Score = 149 bits (375), Expect = 1e-35
Identities = 109/411 (26%), Positives = 184/411 (44%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +GK + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +A + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAHQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 171 FAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQD 1214
+ + SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++D
Sbjct: 291 KTNAKLYCNRGTVNSKLRKLDDAIEDCTSAVKLDATYIKAYLRRAQCYMDTEQYEEAVRD 350
Query: 1215 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 1394
YE + E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL H
Sbjct: 351 YEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHH 409
Query: 1395 PDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
P + +LSDP+ + ++D G+D LD E G
Sbjct: 410 PVQKEE-------EKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 452
Score = 52.8 bits (125), Expect = 1e-06
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G+ R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+L DHK AH ++ K N +I
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL--DHKNAQAH-QEFKNANAVI 143
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
E + D D K M A R K C + + EA V S++
Sbjct: 144 EYEKIAETDFEKRD-FRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
>ref|XP_860665.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 5 [Canis familiaris].
Length = 529
Score = 134 bits (338), Expect = 2e-31
Identities = 112/448 (25%), Positives = 187/448 (41%), Gaps = 37/448 (8%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAAR-------------L 455
A+D P N Y RA + +GK + AL D + + L F R L
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRVRNATIWGGQIAAGHL 113
Query: 456 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSD 635
+ G L G A F++ L+ +++ +A + ++ + A FE D
Sbjct: 114 REGKCHLSLGNAMAACRSFQRALEL---DHKNAQAHQEFKNANAVIEYEKIAETDFEKRD 170
Query: 636 Y----------------------TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 749
+ T + +D+ LE + L+AEC G +A
Sbjct: 171 FRKVNILLLSIGFNNHSVFVVGDTCVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEA 230
Query: 750 ISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 929
S ++ + N +A Y Y E ++ + L++ DH++ + K
Sbjct: 231 QSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKA 290
Query: 930 LNKLIESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIR 1109
L E + ++G Y A Y + +PN + + SK K +AI
Sbjct: 291 LKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIE 350
Query: 1110 VCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 1289
C+ ++++ + A RA+ Y+ E Y+EA++DYE + E ++ ++ L+ AQ L
Sbjct: 351 DCTSAVKLDATYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLEL 409
Query: 1290 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NXXXXXXXXXXXXXXXXX 1463
K+S+++DYYKILGV +NA + EI KAYRK AL HPD +
Sbjct: 410 KKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEA 469
Query: 1464 XXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
+LSDP+ + ++D G+D LD E G
Sbjct: 470 FTILSDPKKKTRYDSGQD-LDEEGMNMG 496
>ref|XP_860728.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 7 [Canis familiaris].
Length = 456
Score = 134 bits (337), Expect = 3e-31
Identities = 106/413 (25%), Positives = 174/413 (42%), Gaps = 2/413 (0%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +GK + AL D + + L
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRL---------------------- 91
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
+D F + +N EK A++ FE D+ + +D+ LE
Sbjct: 92 --DDSFVRFKNANAVIEYEKIAETD-----------------FEKRDFRKVVFCMDRALE 132
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 133 FAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 192
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 193 QFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 252
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQD 1214
+ + SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++D
Sbjct: 253 KTNAKLYCNRGTVNSKLRKLDDAIEDCTSAVKLDATYIKAYLRRAQCYMDTEQYEEAVRD 312
Query: 1215 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 1394
YE + E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL H
Sbjct: 313 YEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHH 371
Query: 1395 PDNFQ--NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
PD + +LSDP+ + ++D G+D LD E G
Sbjct: 372 PDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 423
>ref|XP_860699.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 6 [Canis familiaris].
Length = 156
Score = 81.6 bits (200), Expect = 2e-15
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Frame = +3
Query: 1188 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 1367
E Y+EA++DYE + E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KA
Sbjct: 4 EQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKA 62
Query: 1368 YRKLALQWHPDNFQ--NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQ 1541
YRK AL HPD + +LSDP+ + ++D G+D LD E
Sbjct: 63 YRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMN 121
Query: 1542 GG 1547
G
Sbjct: 122 MG 123
>ref|XP_860799.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 9 [Canis familiaris].
Length = 347
Score = 73.2 bits (178), Expect = 7e-13
Identities = 62/286 (21%), Positives = 114/286 (39%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +GK + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +A + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAHQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 171 FAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAE 1172
+ + SK K +AI C+ ++++ + A RA+
Sbjct: 291 KTNAKLYCNRGTVNSKLRKLDDAIEDCTSAVKLDATYIKAYLRRAQ 336
Score = 52.8 bits (125), Expect = 1e-06
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G+ R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+L DHK AH ++ K N +I
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL--DHKNAQAH-QEFKNANAVI 143
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
E + D D K M A R K C + + EA V S++
Sbjct: 144 EYEKIAETDFEKRD-FRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
>ref|XP_860765.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 8 [Canis familiaris].
Length = 383
Score = 73.2 bits (178), Expect = 7e-13
Identities = 62/286 (21%), Positives = 114/286 (39%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +GK + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +A + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAHQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 171 FAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAE 1172
+ + SK K +AI C+ ++++ + A RA+
Sbjct: 291 KTNAKLYCNRGTVNSKLRKLDDAIEDCTSAVKLDATYIKAYLRRAQ 336
Score = 52.8 bits (125), Expect = 1e-06
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G+ R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+L DHK AH ++ K N +I
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL--DHKNAQAH-QEFKNANAVI 143
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
E + D D K M A R K C + + EA V S++
Sbjct: 144 EYEKIAETDFEKRD-FRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
>ref|XP_860632.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 7
isoform 4 [Canis familiaris].
Length = 337
Score = 73.2 bits (178), Expect = 7e-13
Identities = 62/286 (21%), Positives = 114/286 (39%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +GK + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGKFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +A + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAHQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 171 FAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAE 1172
+ + SK K +AI C+ ++++ + A RA+
Sbjct: 291 KTNAKLYCNRGTVNSKLRKLDDAIEDCTSAVKLDATYIKAYLRRAQ 336
Score = 52.8 bits (125), Expect = 1e-06
Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G+ R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+L DHK AH ++ K N +I
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL--DHKNAQAH-QEFKNANAVI 143
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
E + D D K M A R K C + + EA V S++
Sbjct: 144 EYEKIAETDFEKRD-FRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,880,676
Number of extensions: 1193638
Number of successful extensions: 5983
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 5851
Number of HSP's successfully gapped: 80
Length of query: 573
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 465
Effective length of database: 15,274,216
Effective search space: 7102510440
Effective search space used: 7102510440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008150
(1720 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177113.1| dnaJ homolog subfamily C member 3 [Sus scrof... 906 0.0
Alignment gi|XP_003131457.1| PREDICTED: dnaJ homolog subfamily C member 7... 152 4e-37
Alignment gi|XP_003358088.1| PREDICTED: dnaJ homolog subfamily C member 7... 150 3e-36
Alignment gi|XP_003358087.1| PREDICTED: dnaJ homolog subfamily C member 7... 150 3e-36
Alignment gi|XP_001924354.1| PREDICTED: dnaJ homolog subfamily B member 1... 65 2e-10
Alignment gi|XP_003130730.1| PREDICTED: dnaJ homolog subfamily A member 1... 61 2e-09
Alignment gi|XP_003353842.1| PREDICTED: stress-induced-phosphoprotein 1-l... 59 1e-08
Alignment gi|XP_003134145.2| PREDICTED: tetratricopeptide repeat protein ... 58 1e-08
Alignment gi|XP_003132456.1| PREDICTED: dnaJ homolog subfamily B member 8... 57 2e-08
Alignment gi|XP_001926697.1| PREDICTED: tetratricopeptide repeat protein ... 56 5e-08
>ref|NP_001177113.1| dnaJ homolog subfamily C member 3 [Sus scrofa].
Length = 505
Score = 906 bits (2342), Expect = 0.0
Identities = 459/499 (91%), Positives = 461/499 (92%)
Frame = +3
Query: 129 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHXXXXXXXXXXXXXXXXXSQF 308
MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKH SQF
Sbjct: 1 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF 60
Query: 309 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGK 488
HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGK
Sbjct: 61 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGK 120
Query: 489 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKI 668
LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSD+TAAITFLDKI
Sbjct: 121 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDFTAAITFLDKI 180
Query: 669 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 848
LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD+EL
Sbjct: 181 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDYEL 240
Query: 849 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPN 1028
SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPN
Sbjct: 241 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPN 300
Query: 1029 VAEYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAI 1208
VAEYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAI
Sbjct: 301 VAEYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAI 360
Query: 1209 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 1388
QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
Sbjct: 361 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 420
Query: 1389 WHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFH 1568
WHPDNFQN VLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFH
Sbjct: 421 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFH 480
Query: 1569 RSWNSWQGFKPFSSGGAFR 1625
RSWNSWQGF PFSSGG FR
Sbjct: 481 RSWNSWQGFNPFSSGGPFR 499
>ref|XP_003131457.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 1 [Sus scrofa].
Length = 494
Score = 152 bits (385), Expect = 4e-37
Identities = 110/413 (26%), Positives = 186/413 (45%), Gaps = 2/413 (0%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +G+ + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +AQ + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAQQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 171 FAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQD 1214
+ + SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++D
Sbjct: 291 KTNAKLYCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRD 350
Query: 1215 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 1394
YE + E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL H
Sbjct: 351 YEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHH 409
Query: 1395 PDNFQ--NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
PD + +LSDP+ + ++D G+D LD E G
Sbjct: 410 PDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 461
Score = 50.1 bits (118), Expect = 4e-06
Identities = 49/266 (18%), Positives = 103/266 (38%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+LD + + +K + +
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVIEYE 146
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
+ AE + + ++ P + I E C + + EA V S++
Sbjct: 147 KIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAE----CLAMLGRYPEAQSVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
>ref|XP_003358088.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 3 [Sus scrofa].
Length = 438
Score = 150 bits (378), Expect = 3e-36
Identities = 108/408 (26%), Positives = 183/408 (44%), Gaps = 2/408 (0%)
Frame = +3
Query: 330 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDD 509
P N Y RA + +G+ + AL D + + L F L+ G L G A
Sbjct: 3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRS 62
Query: 510 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILEVCVWD 689
F++ L+ +++ +AQ + ++ + A FE D+ + +D+ LE
Sbjct: 63 FQRALEL---DHKNAQAQQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALEFAPAC 119
Query: 690 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 869
+ L+AEC G +A S ++ + N +A Y Y E ++ +
Sbjct: 120 HRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQ 179
Query: 870 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIR 1049
L++ DH++ + K L E + ++G Y A Y + +PN + +
Sbjct: 180 ALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAK 239
Query: 1050 SKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQ 1229
SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++DYE
Sbjct: 240 LYCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVY 299
Query: 1230 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 1409
+ E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL HPD
Sbjct: 300 Q-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHS 358
Query: 1410 --NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
+ +LSDP+ + ++D G+D LD E G
Sbjct: 359 GASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 405
>ref|XP_003358087.1| PREDICTED: dnaJ homolog subfamily C member 7 isoform 2 [Sus scrofa].
Length = 438
Score = 150 bits (378), Expect = 3e-36
Identities = 108/408 (26%), Positives = 183/408 (44%), Gaps = 2/408 (0%)
Frame = +3
Query: 330 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDD 509
P N Y RA + +G+ + AL D + + L F L+ G L G A
Sbjct: 3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRS 62
Query: 510 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILEVCVWD 689
F++ L+ +++ +AQ + ++ + A FE D+ + +D+ LE
Sbjct: 63 FQRALEL---DHKNAQAQQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDRALEFAPAC 119
Query: 690 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 869
+ L+AEC G +A S ++ + N +A Y Y E ++ +
Sbjct: 120 HRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQ 179
Query: 870 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIR 1049
L++ DH++ + K L E + ++G Y A Y + +PN + +
Sbjct: 180 ALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAK 239
Query: 1050 SKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQ 1229
SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++DYE
Sbjct: 240 LYCNRGTVNSKLRKLDDAIEDCTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVY 299
Query: 1230 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 1409
+ E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL HPD
Sbjct: 300 Q-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHS 358
Query: 1410 --NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
+ +LSDP+ + ++D G+D LD E G
Sbjct: 359 GASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 405
>ref|XP_001924354.1| PREDICTED: dnaJ homolog subfamily B member 12 [Sus scrofa].
Length = 376
Score = 64.7 bits (156), Expect = 2e-10
Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +3
Query: 1269 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXX 1448
E+ + + Q +DYY+ILGV R A +++ KAYRKLAL++HPD
Sbjct: 98 EQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRKLALKFHPDK----NHAPGATEAFK 153
Query: 1449 XXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFHRSWNS----WQGFKPFSSGG 1616
VLS+PE RK++D D ++QG G G FHR + + F F GG
Sbjct: 154 AIGTAYAVLSNPEKRKQYDQFGDDKSQAARQGHGHGD-FHRGFEADISPEDLFNMFFGGG 212
Query: 1617 AFRSN 1631
SN
Sbjct: 213 FPSSN 217
>ref|XP_003130730.1| PREDICTED: dnaJ homolog subfamily A member 1 [Sus scrofa].
Length = 397
Score = 60.8 bits (146), Expect = 2e-09
Identities = 35/84 (41%), Positives = 45/84 (53%)
Frame = +3
Query: 1311 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEM 1490
YY +LGVK NA ++E+ KAYRKLAL++HPD N VLSD +
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN------EGEKFKQISQAYEVLSDAKK 60
Query: 1491 RKKFDDGEDPLDAESQQGGGGGSP 1562
R+ +D G + E GGG GSP
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP 84
>ref|XP_003353842.1| PREDICTED: stress-induced-phosphoprotein 1-like [Sus scrofa].
Length = 543
Score = 58.5 bits (140), Expect = 1e-08
Identities = 57/288 (19%), Positives = 126/288 (43%), Gaps = 24/288 (8%)
Frame = +3
Query: 483 GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL--DAFESSDYTAAITF 656
G +DE E+ P + + E + + ++ Q L+ + L +A++ D+ A+
Sbjct: 188 GSMDEEEEVATPPPPPPPKKEPKPEPMEEDLPENKKQALKEKELGNEAYKKKDFDTALKH 247
Query: 657 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG 836
D+ ++ + +A + ++G+ K + A ++ +N E + +I+ Y ++G
Sbjct: 248 YDRAKDLDPTNMTYMTNQAAVYFEKGDYGKCRELCEKAIEVGRENREDYRQIAKAYARIG 307
Query: 837 D--------------HELSLSEVR--ECLKLDQDHKRCFAHYKQVKKLNKLIESAE---- 956
+ + SL+E R + LK Q ++ +++ +N + E
Sbjct: 308 NSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKG 367
Query: 957 -ELIRDGRYTDATSKYESVMKTEPNVAE-YTIRSKERICHCFSKDEKPVEAIRVCSEVLQ 1130
E + G Y A Y +K P A+ Y+ R+ C++K + A++ C E +Q
Sbjct: 368 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA-----CYTKLLEFQLALKDCEECIQ 422
Query: 1131 VEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEHNENDQQIREGLEK 1274
+EP + +A A + Y +A+ Y+ A + + N ++ +G ++
Sbjct: 423 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDANCKEAADGYQR 470
>ref|XP_003134145.2| PREDICTED: tetratricopeptide repeat protein 1-like [Sus scrofa].
Length = 292
Score = 58.2 bits (139), Expect = 1e-08
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +3
Query: 333 DNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDDF 512
D I + RA + K + A+ D +K I+L ++ A L+R L K KLDEA +D+
Sbjct: 153 DRSILFSNRAAARMKQDKKEMAISDCSKAIQLNPNYIRAILRRAELYEKTDKLDEALEDY 212
Query: 513 KKVLKSNPSENEEKEAQSQLIK--SDEMQRLRSQAL 614
K +L+ +PS ++ +EA +L K D +RL+ + L
Sbjct: 213 KSILEKDPSVHQAREACMRLPKQIEDRNERLKEEML 248
Score = 57.0 bits (136), Expect = 3e-08
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 933 NKLIESAEELIRDGRYTDATSKYESVMKTEPNV--AEYTIRSKERICHCFSKDEKPVEAI 1106
++L E E + G Y +A S Y ++ P+ + +I R +D+K + AI
Sbjct: 117 SRLKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQDKKEM-AI 175
Query: 1107 RVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 1286
CS+ +Q+ P+ + A+ RAE Y + DEA++DY++ E + + Q RE + +
Sbjct: 176 SDCSKAIQLNPNYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQ 235
Query: 1287 LKQSQKRDYYKILG 1328
++ +R ++LG
Sbjct: 236 IEDRNERLKEEMLG 249
>ref|XP_003132456.1| PREDICTED: dnaJ homolog subfamily B member 8-like [Sus scrofa].
Length = 231
Score = 57.4 bits (137), Expect = 2e-08
Identities = 36/107 (33%), Positives = 52/107 (48%)
Frame = +3
Query: 1308 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPE 1487
+YY++LGV+ +A ++I KAYRKLAL+WHPD +N VLSD +
Sbjct: 3 NYYEVLGVQASASPEDIKKAYRKLALRWHPD--KNPDNKEEAEKKFKQVSEAYEVLSDSK 60
Query: 1488 MRKKFDDGEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFSSGGAFRS 1628
R +D +S + GG +P+ PF SG FR+
Sbjct: 61 KRSVYDRA----GCDSWRAGGASTPYS---------SPFDSGYIFRN 94
>ref|XP_001926697.1| PREDICTED: tetratricopeptide repeat protein 13 isoform 2 [Sus
scrofa].
Length = 858
Score = 56.2 bits (134), Expect = 5e-08
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 5/201 (2%)
Frame = +3
Query: 306 FHAAVDGDPDNYIAYYRRATVFLAMG-----KSKAALPDLTKVIELKMDFTAARLQRGHL 470
F + +PD A Y R + G ++ AL +L++VI L+ D QR +
Sbjct: 164 FSTMLQEEPDLVSAIYGRGIAYGKKGLHDVKNAELALFELSRVITLEPDRPEVFEQRAEI 223
Query: 471 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAI 650
L G+++EA +D K ++ PS + R + F S DY A
Sbjct: 224 LSPLGRINEAVNDLTKAIQLQPSA----------------RLYRHRGTLYFISEDYATAH 267
Query: 651 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 830
+ LE+ + F G ++AI K A K K D +A+ + Y +
Sbjct: 268 EDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRE 327
Query: 831 LGDHELSLSEVRECLKLDQDH 893
LG+ E + ++ L L+Q+H
Sbjct: 328 LGNFEAATESFQKALLLNQNH 348
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,838,484
Number of extensions: 738259
Number of successful extensions: 3740
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3677
Number of HSP's successfully gapped: 24
Length of query: 573
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 469
Effective length of database: 8,754,644
Effective search space: 4105928036
Effective search space used: 4105928036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008150
(1720 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032955.2| dnaJ homolog subfamily C member 3 precursor [Mu... 879 0.0
Alignment gi|NP_062769.2| dnaJ homolog subfamily C member 7 [Mus musculus]. 149 7e-36
Alignment gi|NP_063927.1| dnaJ homolog subfamily B member 5 [Mus musculus]. 62 2e-09
Alignment gi|NP_001120839.1| dnaJ homolog subfamily B member 6 isoform d ... 61 3e-09
Alignment gi|NP_001033030.2| dnaJ homolog subfamily B member 6 isoform b ... 61 3e-09
Alignment gi|NP_035977.2| dnaJ homolog subfamily B member 6 isoform c [Mu... 61 3e-09
Alignment gi|NP_001033029.1| dnaJ homolog subfamily B member 6 isoform a ... 61 3e-09
Alignment gi|NP_064349.2| dnaJ homolog subfamily B member 12 [Mus musculu... 61 3e-09
Alignment gi|NP_001158144.1| dnaJ homolog subfamily A member 1 [Mus muscu... 60 7e-09
Alignment gi|NP_032324.1| dnaJ homolog subfamily A member 1 [Mus musculus]. 60 7e-09
>ref|NP_032955.2| dnaJ homolog subfamily C member 3 precursor [Mus musculus].
Length = 504
Score = 879 bits (2271), Expect = 0.0
Identities = 442/499 (88%), Positives = 455/499 (91%)
Frame = +3
Query: 129 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHXXXXXXXXXXXXXXXXXSQF 308
MVAPGSV SRLG+VFPFLLVLVDLQYEGAECGVNADVEKH SQF
Sbjct: 1 MVAPGSVGSRLGAVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF 60
Query: 309 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGK 488
HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI LKMDFTAARLQRGHLLLKQGK
Sbjct: 61 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 120
Query: 489 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKI 668
LDEAEDDFKKVLKSNPSE EEKEA+SQL+K+DEMQRLRSQALDAF+ +DYTAAITFLDKI
Sbjct: 121 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 180
Query: 669 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 848
LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK+DNTEAFYKISTLYYQLGDHEL
Sbjct: 181 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 240
Query: 849 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPN 1028
SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP+
Sbjct: 241 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 300
Query: 1029 VAEYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAI 1208
VAEYT+RSKERICHCFSKDEKPVEAIR+CSEVLQ+EPDNVNALKDRAEAYL+EEMYDEAI
Sbjct: 301 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 360
Query: 1209 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 1388
QDYE AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
Sbjct: 361 QDYEAAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 420
Query: 1389 WHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFH 1568
WHPDNFQN VLSDPEMRKKFDDGEDPLDAESQQ GGGG+PFH
Sbjct: 421 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQ-GGGGNPFH 479
Query: 1569 RSWNSWQGFKPFSSGGAFR 1625
RSWNSWQGF PFSSGG FR
Sbjct: 480 RSWNSWQGFNPFSSGGPFR 498
>ref|NP_062769.2| dnaJ homolog subfamily C member 7 [Mus musculus].
Length = 494
Score = 149 bits (376), Expect = 7e-36
Identities = 107/413 (25%), Positives = 186/413 (45%), Gaps = 2/413 (0%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P+N Y RA + +G+ + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPNNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +AQ + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A ++ + N +A Y Y E ++
Sbjct: 171 FAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACVACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQD 1214
+ + SK + +AI C+ ++++ + A RA+ Y+ E ++EA++D
Sbjct: 291 KTNAKLYCNRGTVNSKLRQLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRD 350
Query: 1215 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 1394
YE + E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL H
Sbjct: 351 YEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHH 409
Query: 1395 PDNFQ--NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
PD + +LSDP+ + ++D G+D LD E G
Sbjct: 410 PDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 461
Score = 49.3 bits (116), Expect = 9e-06
Identities = 49/266 (18%), Positives = 103/266 (38%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G R+A+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+LD + + +K + +
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYE 146
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
+ AE + + ++ P + I E C + + EA V S++
Sbjct: 147 KIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAE----CLAMLGRYPEAQFVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
>ref|NP_063927.1| dnaJ homolog subfamily B member 5 [Mus musculus].
Length = 348
Score = 61.6 bits (148), Expect = 2e-09
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 1305 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDP 1484
+DYYKILG+ A + EI KAYRK+AL++HPD + VLSDP
Sbjct: 3 KDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKE----PNAEEKFKEIAEAYDVLSDP 58
Query: 1485 EMRKKFDD-GEDPLDAESQQGGGGGSPFHRSWN 1580
+ R +D GE+ L GG G FH +++
Sbjct: 59 KKRSLYDQYGEEGLKTGGGSSGGSGGSFHYTFH 91
>ref|NP_001120839.1| dnaJ homolog subfamily B member 6 isoform d [Mus musculus].
Length = 241
Score = 60.8 bits (146), Expect = 3e-09
Identities = 40/107 (37%), Positives = 50/107 (46%)
Frame = +3
Query: 1308 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPE 1487
DYY++LGV+R+A ++I KAYRK AL+WHPD +N VLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPD--KNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 1488 MRKKFDDGEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFSSGGAFRS 1628
R D D E GGGGG H PF G FR+
Sbjct: 61 KR----DIYDKYGKEGLNGGGGGGGIHFD-------SPFEFGFTFRN 96
>ref|NP_001033030.2| dnaJ homolog subfamily B member 6 isoform b [Mus musculus].
Length = 261
Score = 60.8 bits (146), Expect = 3e-09
Identities = 40/107 (37%), Positives = 50/107 (46%)
Frame = +3
Query: 1308 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPE 1487
DYY++LGV+R+A ++I KAYRK AL+WHPD +N VLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPD--KNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 1488 MRKKFDDGEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFSSGGAFRS 1628
R D D E GGGGG H PF G FR+
Sbjct: 61 KR----DIYDKYGKEGLNGGGGGGGIHFD-------SPFEFGFTFRN 96
>ref|NP_035977.2| dnaJ homolog subfamily B member 6 isoform c [Mus musculus].
Length = 242
Score = 60.8 bits (146), Expect = 3e-09
Identities = 40/107 (37%), Positives = 50/107 (46%)
Frame = +3
Query: 1308 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPE 1487
DYY++LGV+R+A ++I KAYRK AL+WHPD +N VLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPD--KNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 1488 MRKKFDDGEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFSSGGAFRS 1628
R D D E GGGGG H PF G FR+
Sbjct: 61 KR----DIYDKYGKEGLNGGGGGGGIHFD-------SPFEFGFTFRN 96
>ref|NP_001033029.1| dnaJ homolog subfamily B member 6 isoform a [Mus musculus].
Length = 365
Score = 60.8 bits (146), Expect = 3e-09
Identities = 40/107 (37%), Positives = 50/107 (46%)
Frame = +3
Query: 1308 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPE 1487
DYY++LGV+R+A ++I KAYRK AL+WHPD +N VLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKQALKWHPD--KNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 1488 MRKKFDDGEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFSSGGAFRS 1628
R D D E GGGGG H PF G FR+
Sbjct: 61 KR----DIYDKYGKEGLNGGGGGGGIHFD-------SPFEFGFTFRN 96
>ref|NP_064349.2| dnaJ homolog subfamily B member 12 [Mus musculus].
Length = 376
Score = 60.8 bits (146), Expect = 3e-09
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Frame = +3
Query: 1269 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXX 1448
E+ + + Q +DYY+ILGV R+A +++ KAYRKLAL++HPD
Sbjct: 98 EQVAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHPDK----NHAPGATEAFK 153
Query: 1449 XXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFHRSWNS----WQGFKPFSSGG 1616
VLS+PE RK++D D ++ G G FHR + + F F GG
Sbjct: 154 AIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHSHGD-FHRGFEADISPEDLFNMFFGGG 212
Query: 1617 AFRSN 1631
SN
Sbjct: 213 FPSSN 217
>ref|NP_001158144.1| dnaJ homolog subfamily A member 1 [Mus musculus].
Length = 397
Score = 59.7 bits (143), Expect = 7e-09
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = +3
Query: 1311 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEM 1490
YY +LGVK NA ++E+ KAYRKLAL++HPD N VL+D +
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN------EGEKFKQISQAYEVLADSKK 60
Query: 1491 RKKFDDGEDPLDAESQQGGGGGSP 1562
R+ +D G + E GGG GSP
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP 84
>ref|NP_032324.1| dnaJ homolog subfamily A member 1 [Mus musculus].
Length = 397
Score = 59.7 bits (143), Expect = 7e-09
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = +3
Query: 1311 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEM 1490
YY +LGVK NA ++E+ KAYRKLAL++HPD N VL+D +
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN------EGEKFKQISQAYEVLADSKK 60
Query: 1491 RKKFDDGEDPLDAESQQGGGGGSP 1562
R+ +D G + E GGG GSP
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP 84
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,431,307
Number of extensions: 993149
Number of successful extensions: 4610
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 4545
Number of HSP's successfully gapped: 35
Length of query: 573
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 466
Effective length of database: 12,403,707
Effective search space: 5780127462
Effective search space used: 5780127462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008150
(1720 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006251.1| dnaJ homolog subfamily C member 3 precursor [Ho... 889 0.0
Alignment gi|NP_003306.3| dnaJ homolog subfamily C member 7 isoform 1 [Ho... 154 3e-37
Alignment gi|NP_001138238.1| dnaJ homolog subfamily C member 7 isoform 2 ... 151 2e-36
Alignment gi|NP_490647.1| dnaJ homolog subfamily B member 6 isoform a [Ho... 64 6e-10
Alignment gi|NP_005485.1| dnaJ homolog subfamily B member 6 isoform b [Ho... 64 6e-10
Alignment gi|NP_006810.1| stress-induced-phosphoprotein 1 [Homo sapiens]. 62 2e-09
Alignment gi|NP_060096.3| dnaJ homolog subfamily B member 12 [Homo sapien... 62 2e-09
Alignment gi|NP_001002762.2| dnaJ homolog subfamily B member 12 [Homo sap... 62 2e-09
Alignment gi|NP_001530.1| dnaJ homolog subfamily A member 1 [Homo sapiens]. 61 4e-09
Alignment gi|NP_003305.1| tetratricopeptide repeat protein 1 [Homo sapien... 60 6e-09
>ref|NP_006251.1| dnaJ homolog subfamily C member 3 precursor [Homo sapiens].
Length = 504
Score = 889 bits (2296), Expect = 0.0
Identities = 449/499 (89%), Positives = 457/499 (91%)
Frame = +3
Query: 129 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHXXXXXXXXXXXXXXXXXSQF 308
MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKH SQF
Sbjct: 1 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF 60
Query: 309 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGK 488
HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI+LKMDFTAARLQRGHLLLKQGK
Sbjct: 61 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 120
Query: 489 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKI 668
LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL+AF S DYTAAI FLDKI
Sbjct: 121 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 180
Query: 669 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 848
LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL
Sbjct: 181 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 240
Query: 849 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPN 1028
SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP+
Sbjct: 241 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 300
Query: 1029 VAEYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAI 1208
+AEYT+RSKERICHCFSKDEKPVEAIRVCSEVLQ+EPDNVNALKDRAEAYL+EEMYDEAI
Sbjct: 301 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 360
Query: 1209 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 1388
QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
Sbjct: 361 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 420
Query: 1389 WHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFH 1568
WHPDNFQN VLSDPEMRKKFDDGEDPLDAESQQ GGGG+PFH
Sbjct: 421 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQ-GGGGNPFH 479
Query: 1569 RSWNSWQGFKPFSSGGAFR 1625
RSWNSWQGF PFSSGG FR
Sbjct: 480 RSWNSWQGFNPFSSGGPFR 498
>ref|NP_003306.3| dnaJ homolog subfamily C member 7 isoform 1 [Homo sapiens].
Length = 494
Score = 154 bits (388), Expect = 3e-37
Identities = 110/413 (26%), Positives = 186/413 (45%), Gaps = 2/413 (0%)
Frame = +3
Query: 315 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLD 494
A+D P N Y RA + +G+ + AL D + + L F L+ G L G
Sbjct: 54 AIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAM 113
Query: 495 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILE 674
A F++ L+ +++ +AQ + ++ + A FE D+ + +D+ LE
Sbjct: 114 AACRSFQRALEL---DHKNAQAQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRALE 170
Query: 675 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 854
+ L+AEC G +A S ++ + N +A Y Y E ++
Sbjct: 171 FAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAV 230
Query: 855 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVA 1034
+ L++ DH++ + K L E + ++G Y A Y + +PN
Sbjct: 231 QFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNI 290
Query: 1035 EYTIRSKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQD 1214
+ + SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++D
Sbjct: 291 KTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRD 350
Query: 1215 YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 1394
YE + E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL H
Sbjct: 351 YEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHH 409
Query: 1395 PDNFQ--NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
PD + +LSDP+ + ++D G+D LD E G
Sbjct: 410 PDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 461
Score = 50.4 bits (119), Expect = 5e-06
Identities = 49/266 (18%), Positives = 103/266 (38%), Gaps = 14/266 (5%)
Frame = +3
Query: 585 EMQRLRSQALDAFESSDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 764
E + + Q + DY A + K +++C +A RA + G R+A+ D +
Sbjct: 27 EAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 765 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 944
+ +L + + + LG+ + + L+LD + + +K + +
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYE 146
Query: 945 ESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIRSKERICHCFSKDEKPVEAIRVCSEV 1124
+ AE + + ++ P + I E C + + EA V S++
Sbjct: 147 KIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAE----CLAMLGRYPEAQSVASDI 202
Query: 1125 LQVEPDNVNALKDRAEAYLVEEMYDEAIQ----------DYETAQEHNENDQQIREGLEK 1274
L+++ N +AL R E+ ++A+Q D+E A N + ++ E
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKED 262
Query: 1275 AQRLLKQSQKRDYYKI----LGVKRN 1340
+ K+ + Y++ LG+ N
Sbjct: 263 GNKAFKEGNYKLAYELYTEALGIDPN 288
>ref|NP_001138238.1| dnaJ homolog subfamily C member 7 isoform 2 [Homo sapiens].
Length = 438
Score = 151 bits (381), Expect = 2e-36
Identities = 108/408 (26%), Positives = 183/408 (44%), Gaps = 2/408 (0%)
Frame = +3
Query: 330 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDD 509
P N Y RA + +G+ + AL D + + L F L+ G L G A
Sbjct: 3 PKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRS 62
Query: 510 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDYTAAITFLDKILEVCVWD 689
F++ L+ +++ +AQ + ++ + A FE D+ + +D+ LE
Sbjct: 63 FQRALEL---DHKNAQAQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAPAC 119
Query: 690 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 869
+ L+AEC G +A S ++ + N +A Y Y E ++ +
Sbjct: 120 HRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQ 179
Query: 870 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNVAEYTIR 1049
L++ DH++ + K L E + ++G Y A Y + +PN + +
Sbjct: 180 ALRMAPDHEKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAK 239
Query: 1050 SKERICHCFSKDEKPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQ 1229
SK K +AI C+ ++++ + A RA+ Y+ E Y+EA++DYE
Sbjct: 240 LYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVY 299
Query: 1230 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ 1409
+ E ++ ++ L+ AQ LK+S+++DYYKILGV +NA + EI KAYRK AL HPD
Sbjct: 300 Q-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHS 358
Query: 1410 --NXXXXXXXXXXXXXXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGG 1547
+ +LSDP+ + ++D G+D LD E G
Sbjct: 359 GASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMG 405
>ref|NP_490647.1| dnaJ homolog subfamily B member 6 isoform a [Homo sapiens].
Length = 326
Score = 63.5 bits (153), Expect = 6e-10
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +3
Query: 1308 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPE 1487
DYY++LGV+R+A ++I KAYRKLAL+WHPD +N VLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPD--KNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 1488 MRKKFDD-GEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFSSGGAFRS 1628
R +D G++ L+ GGGGGS F PF G FR+
Sbjct: 61 KRDIYDKYGKEGLNG----GGGGGSHFD---------SPFEFGFTFRN 95
>ref|NP_005485.1| dnaJ homolog subfamily B member 6 isoform b [Homo sapiens].
Length = 241
Score = 63.5 bits (153), Expect = 6e-10
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +3
Query: 1308 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPE 1487
DYY++LGV+R+A ++I KAYRKLAL+WHPD +N VLSD +
Sbjct: 3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPD--KNPENKEEAERKFKQVAEAYEVLSDAK 60
Query: 1488 MRKKFDD-GEDPLDAESQQGGGGGSPFHRSWNSWQGFKPFSSGGAFRS 1628
R +D G++ L+ GGGGGS F PF G FR+
Sbjct: 61 KRDIYDKYGKEGLNG----GGGGGSHFD---------SPFEFGFTFRN 95
>ref|NP_006810.1| stress-induced-phosphoprotein 1 [Homo sapiens].
Length = 543
Score = 62.0 bits (149), Expect = 2e-09
Identities = 65/306 (21%), Positives = 131/306 (42%), Gaps = 30/306 (9%)
Frame = +3
Query: 483 GKLDEAEDDF--------KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALDAFESSDY 638
G +DE E+ KK K P E + E + Q +K E+ DA++ D+
Sbjct: 188 GSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGN------DAYKKKDF 241
Query: 639 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 818
A+ DK E+ + +A + ++G+ K + A ++ +N E + +I+
Sbjct: 242 DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 301
Query: 819 LYYQLGD--------------HELSLSEVR--ECLKLDQDHKRCFAHYKQVKKLNKLIES 950
Y ++G+ + SL+E R + LK Q ++ +++ +N +
Sbjct: 302 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLAL 361
Query: 951 AE-----ELIRDGRYTDATSKYESVMKTEPNVAE-YTIRSKERICHCFSKDEKPVEAIRV 1112
E E + G Y A Y +K P A+ Y+ R+ C++K + A++
Sbjct: 362 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA-----CYTKLLEFQLALKD 416
Query: 1113 CSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 1292
C E +Q+EP + +A A + Y +A+ Y+ A + + + ++ +G ++ ++
Sbjct: 417 CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC--MMA 474
Query: 1293 QSQKRD 1310
Q + D
Sbjct: 475 QYNRHD 480
>ref|NP_060096.3| dnaJ homolog subfamily B member 12 [Homo sapiens].
Length = 409
Score = 61.6 bits (148), Expect = 2e-09
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Frame = +3
Query: 1269 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXX 1448
E+ + + Q +DYY+ILGV R A +++ KAYR+LAL++HPD
Sbjct: 131 EQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRRLALKFHPDK----NHAPGATEAFK 186
Query: 1449 XXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFHRSWNS----WQGFKPFSSGG 1616
VLS+PE RK++D D ++ G G G FHR + + F F GG
Sbjct: 187 AIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHGHGD-FHRGFEADISPEDLFNMFFGGG 245
Query: 1617 AFRSN 1631
SN
Sbjct: 246 FPSSN 250
>ref|NP_001002762.2| dnaJ homolog subfamily B member 12 [Homo sapiens].
Length = 409
Score = 61.6 bits (148), Expect = 2e-09
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Frame = +3
Query: 1269 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXX 1448
E+ + + Q +DYY+ILGV R A +++ KAYR+LAL++HPD
Sbjct: 131 EQVAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRRLALKFHPDK----NHAPGATEAFK 186
Query: 1449 XXXXXXXVLSDPEMRKKFDDGEDPLDAESQQGGGGGSPFHRSWNS----WQGFKPFSSGG 1616
VLS+PE RK++D D ++ G G G FHR + + F F GG
Sbjct: 187 AIGTAYAVLSNPEKRKQYDQFGDDKSQAARHGHGHGD-FHRGFEADISPEDLFNMFFGGG 245
Query: 1617 AFRSN 1631
SN
Sbjct: 246 FPSSN 250
>ref|NP_001530.1| dnaJ homolog subfamily A member 1 [Homo sapiens].
Length = 397
Score = 60.8 bits (146), Expect = 4e-09
Identities = 35/84 (41%), Positives = 45/84 (53%)
Frame = +3
Query: 1311 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNXXXXXXXXXXXXXXXXXXXVLSDPEM 1490
YY +LGVK NA ++E+ KAYRKLAL++HPD N VLSD +
Sbjct: 7 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN------EGEKFKQISQAYEVLSDAKK 60
Query: 1491 RKKFDDGEDPLDAESQQGGGGGSP 1562
R+ +D G + E GGG GSP
Sbjct: 61 RELYDKGGEQAIKEGGAGGGFGSP 84
>ref|NP_003305.1| tetratricopeptide repeat protein 1 [Homo sapiens].
Length = 292
Score = 60.1 bits (144), Expect = 6e-09
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Frame = +3
Query: 915 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPNV--AEYTIRSKERICHCFSKDE 1088
K+ ++ +L E E + G Y +A S Y ++ P+ E +I R +D+
Sbjct: 111 KRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDK 170
Query: 1089 KPVEAIRVCSEVLQVEPDNVNALKDRAEAYLVEEMYDEAIQDYETAQEHNENDQQIREGL 1268
K + AI CS+ +Q+ P + A+ RAE Y + DEA++DY++ E D I +
Sbjct: 171 KEM-AINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSIL---EKDPSIHQAR 226
Query: 1269 EKAQRLLKQSQKRD 1310
E RL KQ ++R+
Sbjct: 227 EACMRLPKQIEERN 240
Score = 53.9 bits (128), Expect = 4e-07
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Frame = +3
Query: 342 IAYYRRATVFLAMGKSKAALPDLTKVIELKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 521
I + RA + K + A+ D +K I+L + A L+R L K KLDEA +D+K +
Sbjct: 156 ILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSI 215
Query: 522 LKSNPSENEEKEAQSQLIK--SDEMQRLRSQAL 614
L+ +PS ++ +EA +L K + +RL+ + L
Sbjct: 216 LEKDPSIHQAREACMRLPKQIEERNERLKEEML 248
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,929,024
Number of extensions: 1175259
Number of successful extensions: 5771
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 5670
Number of HSP's successfully gapped: 34
Length of query: 573
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 465
Effective length of database: 14,737,052
Effective search space: 6852729180
Effective search space used: 6852729180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008150
(1720 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 365 5e-98
>Sscrofa_Chr11
|| Length = 87690581
Score = 365 bits (184), Expect = 5e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 673 aggtttgtgtttgggatgcagaactacgggaacttcgagctgaatgttttataaaagaag 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72145733 aggtttgtgtttgggatgcagaactacgggaacttcgagctgaatgttttataaaagaag 72145792
Query: 733 gggaacctaggaaagccataagtgacttaaaagctgcatcaaaattgaagaatgataata 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72145793 gggaacctaggaaagccataagtgacttaaaagctgcatcaaaattgaagaatgataata 72145852
Query: 793 ctgaggcattttataaaatcagcactctgtactatcagctaggagaccacgaactgtctc 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72145853 ctgaggcattttataaaatcagcactctgtactatcagctaggagaccacgaactgtctc 72145912
Query: 853 tcag 856
||||
Sbjct: 72145913 tcag 72145916
Score = 297 bits (150), Expect = 1e-77
Identities = 179/185 (96%), Gaps = 3/185 (1%)
Strand = Plus / Plus
Query: 1481 tccagagatgaggaagaagttcgacgacggcgaagaccccctggacgccgagagccagca 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72161528 tccagagatgaggaagaagttcgacgacggcgaagaccccctggacgccgagagccagca 72161587
Query: 1541 gggcggcggcggcgggagccccttccaccggagctggaactcgtggcagggcttcaaacc 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 72161588 gggcggcggcggcgggagccccttccaccggagctggaactcgtggcagggcttcaaccc 72161647
Query: 1601 cttcagctcgggcggggccttccgc-tcaaatt-cacttcanttaga-cagctgtctctc 1657
|||||||||||||||| |||||||| ||||||| ||||||| ||||| ||||||||||||
Sbjct: 72161648 cttcagctcgggcgggcccttccgcttcaaattccacttcaattagaccagctgtctctc 72161707
Query: 1658 cgccc 1662
|||||
Sbjct: 72161708 cgccc 72161712
Score = 295 bits (149), Expect = 4e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 521 gctcaagtcaaatccaagtgaaaatgaagaaaaggaagcccagtcccagcttatcaagtc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72144287 gctcaagtcaaatccaagtgaaaatgaagaaaaggaagcccagtcccagcttatcaagtc 72144346
Query: 581 tgatgaaatgcagcgtttgcgctcacaagcccttgatgctttcgaaagctcagattatac 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72144347 tgatgaaatgcagcgtttgcgctcacaagcccttgatgctttcgaaagctcagattatac 72144406
Query: 641 tgctgctataactttccttgataagattt 669
|||||||||||||||||||||||||||||
Sbjct: 72144407 tgctgctataactttccttgataagattt 72144435
Score = 280 bits (141), Expect = 2e-72
Identities = 201/215 (93%), Gaps = 5/215 (2%)
Strand = Plus / Plus
Query: 1 cactgggcgccagccgccttaggcccgagcgagagccgacggcgggcgggtgcagctaca 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72092302 cactgggcgccagcggccttaggcccgagcgagagccgacggcgggcgggtgcagctaca 72092361
Query: 61 gccggagtgccggcgggggctcgtgggccccgcacctttacactt-cctcaccgcccgcg 119
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct: 72092362 gccggagtgccggcgggggctcgtggggcccgcacctttacactttcctc-ccgcccgcg 72092420
Query: 120 tcctcggacat-ggtggcccccggctctgtgaccagccggctgggctcggtattcccctt 178
|| || ||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 72092421 tcttc-gacatgggtggcccccggctctgtgaccagccggctgggctcggta-tcccctt 72092478
Query: 179 cttgttggtcctggtggacctgcagtacgaaggtg 213
|| | |||| || ||||||||||||||||||||
Sbjct: 72092479 ctgttnggtcntgtgggacctgcagtacgaaggtg 72092513
Score = 268 bits (135), Expect = 9e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1202 agccattcaggattatgaaactgctcaggaacacaatgagaatgaccagcagattcgaga 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72158486 agccattcaggattatgaaactgctcaggaacacaatgagaatgaccagcagattcgaga 72158545
Query: 1262 aggtctcgagaaagcccagaggctattgaaacagtcgcagaaacgagattattataaaat 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72158546 aggtctcgagaaagcccagaggctattgaaacagtcgcagaaacgagattattataaaat 72158605
Query: 1322 cttgggagtaaaaag 1336
|||||||||||||||
Sbjct: 72158606 cttgggagtaaaaag 72158620
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 320 agatggtgaccctgataactatattgcttactatcggagagctactgtctttttagcaat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72128793 agatggtgaccctgataactatattgcttactatcggagagctactgtctttttagcaat 72128852
Query: 380 gggcaaatcaaaagcagcacttcctgacttaactaaagtgatcgaattgaagatggattt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72128853 gggcaaatcaaaagcagcacttcctgacttaactaaagtgatcgaattgaagatggattt 72128912
Query: 440 cactgcag 447
||||||||
Sbjct: 72128913 cactgcag 72128920
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 854 cagtgaagttcgtgaatgtcttaaacttgaccaggatcataaaaggtgttttgcacacta 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72146362 cagtgaagttcgtgaatgtcttaaacttgaccaggatcataaaaggtgttttgcacacta 72146421
Query: 914 taaacaagtaaagaaacttaataagctgatcgagtcagctgaagagctcatcagagacgg 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72146422 taaacaagtaaagaaacttaataagctgatcgagtcagctgaagagctcatcagagacgg 72146481
Query: 974 cag 976
|||
Sbjct: 72146482 cag 72146484
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1081 aggatgagaagcctgtggaagctattcgagtgtgttcggaagttttacaggtggagcctg 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72149455 aggatgagaagcctgtggaagctattcgagtgtgttcggaagttttacaggtggagcctg 72149514
Query: 1141 acaatgtgaatgctctgaaagatcgagcagaggcctatttagtagaagaaatgtatgatg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72149515 acaatgtgaatgctctgaaagatcgagcagaggcctatttagtagaagaaatgtatgatg 72149574
Query: 1201 aag 1203
|||
Sbjct: 72149575 aag 72149577
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 209 aggtgctgaatgtggagtaaatgcagatgttgagaaacatcttgaattaggcaagaaact 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72118475 aggtgctgaatgtggagtaaatgcagatgttgagaaacatcttgaattaggcaagaaact 72118534
Query: 269 acttgcagctggacagctagctgacgctttatctcagtttcatgctgcagtag 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72118535 acttgcagctggacagctagctgacgctttatctcagtttcatgctgcagtag 72118587
Score = 218 bits (110), Expect = 8e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 974 cagatacacagatgcgaccagcaaatatgaatctgtcatgaaaacagagccaaatgttgc 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72149264 cagatacacagatgcgaccagcaaatatgaatctgtcatgaaaacagagccaaatgttgc 72149323
Query: 1034 tgaatatacaattcgttcaaaagaaaggatttgccactgcttttctaagg 1083
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72149324 tgaatatacaattcgttcaaaagaaaggatttgccactgcttttctaagg 72149373
Score = 149 bits (75), Expect = 6e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 447 gcaagattacagagaggtcacttattactcaaacaaggaaaacttgatgaagcagaagat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72130983 gcaagattacagagaggtcacttattactcaaacaaggaaaacttgatgaagcagaagat 72131042
Query: 507 gattttaaaaaagtg 521
|||||||||||||||
Sbjct: 72131043 gattttaaaaaagtg 72131057
Score = 145 bits (73), Expect = 9e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1335 agaaatgccaaaaagcaggaaatcattaaagcataccgaaaattagcactgcagtggcac 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72159762 agaaatgccaaaaagcaggaaatcattaaagcataccgaaaattagcactgcagtggcac 72159821
Query: 1395 ccagataacttcc 1407
|||||||||||||
Sbjct: 72159822 ccagataacttcc 72159834
Score = 85.7 bits (43), Expect = 7e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1443 ttcatcgacatagctgctgcaaaagaagtcctctccgatccag 1485
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72159870 ttcatcgacatagctgctgcaaaagaagtcctctccgatccag 72159912
Score = 79.8 bits (40), Expect = 5e-12
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 262 agaaactacttgcagctggacagctagctgacgctttatctcagtttcatgctgcagtag 321
||||||||||||||| ||||||||||| ||| ||||||||||| | ||||||||||||||
Sbjct: 72114884 agaaactacttgcaggtggacagctaggtgatgctttatctcattctcatgctgcagtag 72114943
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,285,957
Number of extensions: 359
Number of successful extensions: 359
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 14
Length of query: 1720
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1698
Effective length of database: 2,808,408,574
Effective search space: 4768677758652
Effective search space used: 4768677758652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)