Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008162
(1070 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776623.5| toll-like receptor 4 precursor [Bos taurus]. 409 e-114
Alignment gi|NP_001069636.1| CD180 antigen [Bos taurus]. 122 5e-28
Alignment gi|XP_002696718.1| PREDICTED: leucine rich repeat and Ig domain... 89 5e-18
Alignment gi|XP_598942.4| PREDICTED: leucine rich repeat and Ig domain co... 89 5e-18
Alignment gi|XP_002689536.1| PREDICTED: leucine rich repeat protein 1, ne... 85 1e-16
Alignment gi|XP_590571.1| PREDICTED: leucine rich repeat protein 1, neuro... 85 1e-16
Alignment gi|NP_001077147.1| leucine-rich repeat-containing protein 14 [B... 80 2e-15
Alignment gi|NP_001008664.1| toll-like receptor 3 precursor [Bos taurus]. 77 2e-14
Alignment gi|XP_002693573.1| PREDICTED: leucine rich repeat containing 4-... 75 1e-13
Alignment gi|XP_883783.1| PREDICTED: leucine rich repeat containing 4 iso... 75 1e-13
>ref|NP_776623.5| toll-like receptor 4 precursor [Bos taurus].
Length = 841
Score = 409 bits (1051), Expect = e-114
Identities = 206/267 (77%), Positives = 223/267 (83%)
Frame = +1
Query: 244 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 423
M+ R RLA A IPA A LSCLR+ESWDPCVQVVPNISYQCMELN YKIPDNIP S K+LD
Sbjct: 1 MMARARLAAALIPATAILSCLRTESWDPCVQVVPNISYQCMELNLYKIPDNIPISTKMLD 60
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG 603
LSFNYL HL S++FSSFPELQVLDLSRCEI+ I+DD +QGLN+LSTLILTGNPIQSLA G
Sbjct: 61 LSFNYLRHLGSHNFSSFPELQVLDLSRCEIKIIEDDTFQGLNHLSTLILTGNPIQSLAWG 120
Query: 604 AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL 783
AFSGL SLQKLVAVETNL SL DFPIGHLK LKELNVAHN IHSFKLPEYFSNLPNLEHL
Sbjct: 121 AFSGLSSLQKLVAVETNLVSLNDFPIGHLKNLKELNVAHNFIHSFKLPEYFSNLPNLEHL 180
Query: 784 DLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSS 963
DLS NKI+NIY+E ++VLHQ+ FIEPG F +I+LNGLTLRSNFNSS
Sbjct: 181 DLSNNKIQNIYYEDVKVLHQMPLLNLSLDLSLNPLDFIEPGTFKEIKLNGLTLRSNFNSS 240
Query: 964 DVMKTCIQGLAGSKINQLGFGELKNER 1044
VMKTCIQGLAG K N+L GE KNER
Sbjct: 241 HVMKTCIQGLAGLKTNRLVLGEFKNER 267
Score = 51.2 bits (121), Expect = 2e-06
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Frame = +1
Query: 406 SVKILDLSFNYLSHLDSNSFSSF--PELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGN 579
S++ LDL N+LS S + F L+ LDLS ++ T+ + + GL L L +
Sbjct: 374 SLQYLDLKRNHLSFKGCCSHTDFGTTNLKHLDLSFNDVITLGSN-FMGLEQLEHLDFQHS 432
Query: 580 PIQSL-ALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYF 756
++ + A AF L +L+ L TN+ + L +L+ L +A N + LP+ F
Sbjct: 433 TLKQINAFSAFLSLRNLRYLDISYTNIRIVFHGIFTGLVSLQTLKMAGNSFQNNLLPDIF 492
Query: 757 SNLPNLEHLDLSKNKIENI 813
+ L NL LDLSK ++E +
Sbjct: 493 TELTNLTVLDLSKCQLEQV 511
Score = 50.1 bits (118), Expect = 3e-06
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 25/170 (14%)
Frame = +1
Query: 403 TSVKILDLSFN-------------YLSHLD--------SNSFSSF---PELQVLDLSRCE 510
T++K LDLSFN L HLD N+FS+F L+ LD+S
Sbjct: 399 TNLKHLDLSFNDVITLGSNFMGLEQLEHLDFQHSTLKQINAFSAFLSLRNLRYLDISYTN 458
Query: 511 IQTIDDDAYQGLNYLSTLILTGNPIQ-SLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I+ + + GL L TL + GN Q +L F+ L +L L + L +
Sbjct: 459 IRIVFHGIFTGLVSLQTLKMAGNSFQNNLLPDIFTELTNLTVLDLSKCQLEQVAQTAFHS 518
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVL 837
L +L+ LN++HN + S Y L +L LD S N+I + LQ L
Sbjct: 519 LSSLQVLNMSHNKLLSLDTFLY-EPLHSLRILDCSFNRIMASKEQELQNL 567
>ref|NP_001069636.1| CD180 antigen [Bos taurus].
Length = 661
Score = 122 bits (306), Expect = 5e-28
Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 1/247 (0%)
Frame = +1
Query: 301 CLRSESWDP-CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFP 477
C S DP C + N +Y C L +IPD +P + ++L+ SFN+L + + +FS
Sbjct: 18 CKAIPSSDPKCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLI 77
Query: 478 ELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNL 657
L LDL+RC+I + +D +Q + L+T++LTGNP+ +A + +G L+ L +T +
Sbjct: 78 NLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGI 137
Query: 658 ASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVL 837
++L+ P+ +L+ L+ L++ NHI S LPE F NL+ LD N I I + L
Sbjct: 138 SNLKFIPVHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAIHYISRKDTNSL 196
Query: 838 HQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSSDVMKTCIQGLAGSKINQL 1017
Q IEPGAF L + N + K GL S + L
Sbjct: 197 EQATNLSLNFNGNDIKG--IEPGAFSSKIFQSLKFGGSLNLFIIFK----GLQNSTLQSL 250
Query: 1018 GFGELKN 1038
G ++
Sbjct: 251 WLGTFED 257
>ref|XP_002696718.1| PREDICTED: leucine rich repeat and Ig domain containing 1-like [Bos
taurus].
Length = 801
Score = 89.4 bits (220), Expect = 5e-18
Identities = 55/160 (34%), Positives = 82/160 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C F +P+ IPT ++LDL N + L+ + F+SFP L+ L+L+ + ++ A+
Sbjct: 238 CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 297
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L TL L N ++ + LG F+GL +L KL E + L D+ L LK L V
Sbjct: 298 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 357
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLH 840
N + + FS L +LE L L K + +I E L LH
Sbjct: 358 NDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 396
>ref|XP_598942.4| PREDICTED: leucine rich repeat and Ig domain containing 1-like [Bos
taurus].
Length = 886
Score = 89.4 bits (220), Expect = 5e-18
Identities = 55/160 (34%), Positives = 82/160 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C F +P+ IPT ++LDL N + L+ + F+SFP L+ L+L+ + ++ A+
Sbjct: 323 CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 382
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L TL L N ++ + LG F+GL +L KL E + L D+ L LK L V
Sbjct: 383 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 442
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLH 840
N + + FS L +LE L L K + +I E L LH
Sbjct: 443 NDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 481
>ref|XP_002689536.1| PREDICTED: leucine rich repeat protein 1, neuronal-like [Bos
taurus].
Length = 606
Score = 85.1 bits (209), Expect = 1e-16
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSINPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 50.4 bits (119), Expect = 3e-06
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = +1
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSLA 597
L +Y LD +S L + LS + TI A++ L YL+ L L+ NPI ++
Sbjct: 230 LEIDYWPLLDMMPANSLYGLNLTSLSITNTNLSTIPFLAFKHLVYLTHLNLSYNPISTIE 289
Query: 598 LGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLE 777
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ LE
Sbjct: 290 AGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRALE 348
Query: 778 HLDLSKNKI 804
L ++ N +
Sbjct: 349 VLSINNNPL 357
>ref|XP_590571.1| PREDICTED: leucine rich repeat protein 1, neuronal-like isoform 1
[Bos taurus].
Length = 606
Score = 85.1 bits (209), Expect = 1e-16
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSINPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 50.4 bits (119), Expect = 3e-06
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = +1
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSLA 597
L +Y LD +S L + LS + TI A++ L YL+ L L+ NPI ++
Sbjct: 230 LEIDYWPLLDMMPANSLYGLNLTSLSITNTNLSTIPFLAFKHLVYLTHLNLSYNPISTIE 289
Query: 598 LGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLE 777
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ LE
Sbjct: 290 AGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRALE 348
Query: 778 HLDLSKNKI 804
L ++ N +
Sbjct: 349 VLSINNNPL 357
>ref|NP_001077147.1| leucine-rich repeat-containing protein 14 [Bos taurus].
Length = 510
Score = 80.5 bits (197), Expect = 2e-15
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 6/192 (3%)
Frame = +1
Query: 280 PAMAFLSCLRSESWDPCVQVVP------NISYQCMELNFYKIPDNIPTSVKILDLSFNYL 441
PA+ LS L P P + + +C L +P IP + L L N +
Sbjct: 6 PALLLLSLLSLPGLPPRAAACPAACRCYSATVECGALRLRVVPPGIPPGTQTLFLQDNSI 65
Query: 442 SHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLP 621
+ L+ + L+ L L + ++ A++ + L L LTGN ++ L +GAF+GL
Sbjct: 66 ARLEPGILAPLASLRHLYLHNNSLHALESGAFRTQSRLLELALTGNRLRGLRVGAFAGLA 125
Query: 622 SLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNK 801
L+ L L L DF HL+ L+EL++ N I + + + L +L LDLS+N+
Sbjct: 126 QLRVLYLAGNQLVQLLDFTFLHLQRLQELHLQENSIELLE-DQALAGLSSLALLDLSRNQ 184
Query: 802 IENIYHEHLQVL 837
+ I E LQ L
Sbjct: 185 LGTISREALQPL 196
>ref|NP_001008664.1| toll-like receptor 3 precursor [Bos taurus].
Length = 904
Score = 77.4 bits (189), Expect = 2e-14
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 2/221 (0%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C L +IPD++PT++ +L+L+ N L L +F+ + +L LD I ++ + Q
Sbjct: 38 CSHLKLTQIPDDLPTNITVLNLTHNQLRRLPPANFTRYSQLTTLDGGFNSISKLEPELCQ 97
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L +L L L N I L+ F +L +L + ++ +++ P +LK L +L+++H
Sbjct: 98 SLPWLEILNLQHNEISQLSDKTFIFCMNLTELHLMSNSIQKIKNDPFKNLKNLIKLDLSH 157
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIE 900
N + S KL L NL+ L LS NKI ++ L
Sbjct: 158 NGLSSTKLGTQL-QLENLQELLLSNNKISSLTPGEFDFLGNSSLKRLELSSNQIKE--FS 214
Query: 901 PGAFYKI-RLNGLTL-RSNFNSSDVMKTCIQGLAGSKINQL 1017
PG F+ + L+GL+L + + S K C++ L+ + I L
Sbjct: 215 PGCFHTLGELSGLSLNNAKLSPSLTEKLCLE-LSNTSIENL 254
Score = 57.8 bits (138), Expect = 2e-08
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = +1
Query: 415 ILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEI-QTIDDDAYQGLNYLSTLILTGNPIQS 591
+LDL+ N +S + S +FS L+VLDL EI Q + ++GL+ + + L+ N
Sbjct: 412 LLDLTKNKISKIQSGAFSWLGHLEVLDLGLNEIGQELTGQEWRGLDNIVEIYLSYNKYLE 471
Query: 592 LALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPN 771
L +F+ +PSLQ+L+ L +++ P F LPN
Sbjct: 472 LTTNSFTSVPSLQRLMLRRVALKNVDCSP-----------------------SPFRPLPN 508
Query: 772 LEHLDLSKNKIENIYHEHLQVLHQV 846
L LDLS N I NI E L+ L ++
Sbjct: 509 LVILDLSNNNIANINDELLKGLEKL 533
>ref|XP_002693573.1| PREDICTED: leucine rich repeat containing 4-like [Bos taurus].
Length = 640
Score = 74.7 bits (182), Expect = 1e-13
Identities = 45/151 (29%), Positives = 77/151 (50%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C+ N +PD I T+ ++L+L N + + NSF L++L LSR I+TI+ A+
Sbjct: 62 CVRKNLRDVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 121
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L+TL L N + ++ GAF L L++L + S+ + + +L+ L++
Sbjct: 122 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 181
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
S+ F L NL +L+L+ + I
Sbjct: 182 LKRLSYISEGAFEGLSNLRYLNLAMCNLREI 212
Score = 61.6 bits (148), Expect = 1e-09
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Frame = +1
Query: 268 VATIP--AMAFLSCLRSESW--DPCVQVVPNISYQCMELNFYKIPDNIPTSVKILDLS-F 432
+ TIP A +LS L+ E W + ++ +P+ + F +IP S++ LDL
Sbjct: 136 LTTIPNGAFVYLSKLK-ELWLRNNPIESIPSYA-------FNRIP-----SLRRLDLGEL 182
Query: 433 NYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFS 612
LS++ +F L+ L+L+ C ++ I + L L L L+GN + ++ G+F
Sbjct: 183 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQ 240
Query: 613 GLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLS 792
GL LQKL +++ + +E +L++L E+N+AHN++ + + F+ L +LE + L
Sbjct: 241 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLH 299
Query: 793 KN 798
N
Sbjct: 300 HN 301
>ref|XP_883783.1| PREDICTED: leucine rich repeat containing 4 isoform 4 [Bos taurus].
Length = 640
Score = 74.7 bits (182), Expect = 1e-13
Identities = 45/151 (29%), Positives = 77/151 (50%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C+ N +PD I T+ ++L+L N + + NSF L++L LSR I+TI+ A+
Sbjct: 62 CVRKNLRDVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 121
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L+TL L N + ++ GAF L L++L + S+ + + +L+ L++
Sbjct: 122 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 181
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
S+ F L NL +L+L+ + I
Sbjct: 182 LKRLSYISEGAFEGLSNLRYLNLAMCNLREI 212
Score = 61.6 bits (148), Expect = 1e-09
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Frame = +1
Query: 268 VATIP--AMAFLSCLRSESW--DPCVQVVPNISYQCMELNFYKIPDNIPTSVKILDLS-F 432
+ TIP A +LS L+ E W + ++ +P+ + F +IP S++ LDL
Sbjct: 136 LTTIPNGAFVYLSKLK-ELWLRNNPIESIPSYA-------FNRIP-----SLRRLDLGEL 182
Query: 433 NYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFS 612
LS++ +F L+ L+L+ C ++ I + L L L L+GN + ++ G+F
Sbjct: 183 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQ 240
Query: 613 GLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLS 792
GL LQKL +++ + +E +L++L E+N+AHN++ + + F+ L +LE + L
Sbjct: 241 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLH 299
Query: 793 KN 798
N
Sbjct: 300 HN 301
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,326,935
Number of extensions: 980271
Number of successful extensions: 3583
Number of sequences better than 1.0e-05: 120
Number of HSP's gapped: 3249
Number of HSP's successfully gapped: 210
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008162
(1070 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002950.2| toll-like receptor 4 [Canis lupus familiaris]. 362 e-100
Alignment gi|XP_544362.2| PREDICTED: similar to CD180 antigen precursor (... 120 3e-27
Alignment gi|XP_544785.2| PREDICTED: similar to leucine-rich repeat neuro... 90 4e-18
Alignment gi|XP_538692.1| PREDICTED: similar to leucine rich repeat neuro... 85 1e-16
Alignment gi|XP_865282.1| PREDICTED: similar to leucine rich repeat neuro... 84 3e-16
Alignment gi|XP_538355.2| PREDICTED: similar to Ran GTPase-activating pro... 80 3e-15
Alignment gi|XP_540020.2| PREDICTED: similar to Toll-like receptor 3 prec... 79 7e-15
Alignment gi|XP_540535.1| PREDICTED: similar to netrin-G1 ligand [Canis f... 75 8e-14
Alignment gi|XP_852381.1| PREDICTED: similar to CG12199-PA, isoform A [Ca... 75 8e-14
Alignment gi|XP_540322.2| PREDICTED: similar to leucine rich repeat neuro... 74 3e-13
>ref|NP_001002950.2| toll-like receptor 4 [Canis lupus familiaris].
Length = 833
Score = 362 bits (930), Expect = e-100
Identities = 188/267 (70%), Positives = 210/267 (78%)
Frame = +1
Query: 244 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 423
M+ RL IPAMAFLSCLR ESWDPC+QVV N +YQCMELN KIP+NIPTS + LD
Sbjct: 1 MMSPTRLVGILIPAMAFLSCLRPESWDPCMQVVANTTYQCMELNLSKIPNNIPTSTEKLD 60
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG 603
LSFN L HL S+ FS+FP+LQVLDLSRCEIQ I+DDAYQGLN+LS LILTGNPIQ L
Sbjct: 61 LSFNPLRHLGSHCFSNFPKLQVLDLSRCEIQVIEDDAYQGLNHLSILILTGNPIQRLFPR 120
Query: 604 AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL 783
AFSGL SL+ LVA ET L SLEDFPIGHLKTLKELNVAHN IHSFKLP YFSN+PNLE++
Sbjct: 121 AFSGLSSLKTLVAKETKLTSLEDFPIGHLKTLKELNVAHNLIHSFKLPAYFSNMPNLENV 180
Query: 784 DLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSS 963
DLS NKI+NIY E LQVLH + FI+PG+F +I+L+ LTLRSNFNS+
Sbjct: 181 DLSNNKIQNIYREDLQVLHHMPLLNLSLDLSLNPLYFIQPGSFKEIKLHKLTLRSNFNST 240
Query: 964 DVMKTCIQGLAGSKINQLGFGELKNER 1044
DVMKT IQGLAG KINQL GE KNER
Sbjct: 241 DVMKTFIQGLAGLKINQLVLGEFKNER 267
>ref|XP_544362.2| PREDICTED: similar to CD180 antigen precursor (Lymphocyte antigen 64)
(Radioprotective 105 kDa protein) [Canis familiaris].
Length = 661
Score = 120 bits (300), Expect = 3e-27
Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 1/248 (0%)
Frame = +1
Query: 298 SCLRSESWDP-CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSF 474
SC S D C + N +Y C L ++PD +P + + L+ FN+L +++ +FS
Sbjct: 17 SCKAITSSDQMCTEKEANKTYNCENLGLTEVPDTLPNTTEFLEFGFNFLPTVENTTFSRL 76
Query: 475 PELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETN 654
+L LDL+RC+I + +D +Q + L+T++LTGNP+ +A + +G L+ L +T
Sbjct: 77 IDLIFLDLTRCQINWVHEDTFQNHHQLNTIVLTGNPLIFMAETSLNGPKLLKHLFLTQTG 136
Query: 655 LASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQV 834
+++L P+ +L+ L+ L++ N+I S K PE F + NL+ LD N I + E +
Sbjct: 137 ISNLGFIPMHNLENLESLHLGSNYISSIKFPENFP-IQNLKVLDFQNNVIHYLSSEDMNT 195
Query: 835 LHQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSSDVMKTCIQGLAGSKINQ 1014
L Q IEPGAF+ L + N S ++K GL +
Sbjct: 196 LKQATNLSLNFNGNDIKD--IEPGAFHSKIFQSLKFGGSLNLSVILK----GLQNTTTKS 249
Query: 1015 LGFGELKN 1038
L G ++
Sbjct: 250 LWLGSYED 257
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Frame = +1
Query: 406 SVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPI 585
SV+ ++L +Y+S L S +F F +LQ LDL+ ++ + QG+ L L+L N
Sbjct: 275 SVESINLQKHYISDLSSATFRCFTQLQELDLTAHHLREL-PPGIQGMKALKKLVLNVNRF 333
Query: 586 QSLALGAFSGLPSLQKLVAVETNLASLEDFPIG---HLKTLKELNVAHNHIHSFKLPE-Y 753
L + PSL L +++ N+ L DF G L+ L++L+++H+ I +
Sbjct: 334 DELCQIHAASFPSLTDL-SIKGNMKKL-DFGAGCLEKLENLQKLDLSHSDIEASDCCNLQ 391
Query: 754 FSNLPNLEHLDLSKNK 801
NL +L++L+LS N+
Sbjct: 392 LKNLRHLQYLNLSYNE 407
>ref|XP_544785.2| PREDICTED: similar to leucine-rich repeat neuronal 6A [Canis
familiaris].
Length = 620
Score = 89.7 bits (221), Expect = 4e-18
Identities = 55/162 (33%), Positives = 83/162 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C F +P+ IPT ++LDL N + L+ + F+SFP L+ L+L+ + ++ A+
Sbjct: 57 CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 116
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L TL L N ++ + LG F+GL +L KL E + L D+ L LK L V
Sbjct: 117 NLFSLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 176
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
N + + FS L +LE L L K + +I E L LH +
Sbjct: 177 NDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHSL 217
>ref|XP_538692.1| PREDICTED: similar to leucine rich repeat neuronal 6C isoform 1
[Canis familiaris].
Length = 606
Score = 84.7 bits (208), Expect = 1e-16
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSVNPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 49.7 bits (117), Expect = 5e-06
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = +1
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSLA 597
L +Y LD +S L + LS + T+ A++ L YL+ L L+ NPI ++
Sbjct: 230 LEIDYWPLLDMMPANSLYGLNLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIE 289
Query: 598 LGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLE 777
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ LE
Sbjct: 290 AGMFSELIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRALE 348
Query: 778 HLDLSKNKI 804
L ++ N +
Sbjct: 349 VLSINNNPL 357
>ref|XP_865282.1| PREDICTED: similar to leucine rich repeat neuronal 6C isoform 2
[Canis familiaris].
Length = 560
Score = 83.6 bits (205), Expect = 3e-16
Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSVNPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEY-FSNLPNLEHLDL 789
L L +++ H++ +P Y F L +L+HL++
Sbjct: 152 LHNLNLISLHLKHLNINNMPVYAFKRLFHLKHLEI 186
Score = 49.7 bits (117), Expect = 5e-06
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = +1
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSLA 597
L +Y LD +S L + LS + T+ A++ L YL+ L L+ NPI ++
Sbjct: 184 LEIDYWPLLDMMPANSLYGLNLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIE 243
Query: 598 LGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLE 777
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ LE
Sbjct: 244 AGMFSELIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRALE 302
Query: 778 HLDLSKNKI 804
L ++ N +
Sbjct: 303 VLSINNNPL 311
>ref|XP_538355.2| PREDICTED: similar to Ran GTPase-activating protein 1 [Canis
familiaris].
Length = 1323
Score = 80.5 bits (197), Expect = 3e-15
Identities = 57/168 (33%), Positives = 76/168 (45%), Gaps = 1/168 (0%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
CV P C N ++PD +P + LDL N L + +F P L LDL C
Sbjct: 619 CVCDNPRRHVACRHQNLTEVPDAVPELTQRLDLQGNLLKVIPPAAFRDLPYLTHLDLRHC 678
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
+++ + + A++GL L L L N + SL A GL SLQ+L L L G
Sbjct: 679 QVELVAEGAFRGLGRLQILNLASNRLSSLPQEALDGLGSLQRLDLERNVLEELRPGTFGA 738
Query: 688 LKTLKELNVAHNHIHSFKLPEY-FSNLPNLEHLDLSKNKIENIYHEHL 828
L L LN+AHN + LP F LP L LS N + + E L
Sbjct: 739 LGALTTLNLAHNAL--VYLPAMTFQGLPRARWLRLSHNALSVLDPEAL 784
Score = 50.4 bits (119), Expect = 3e-06
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = +1
Query: 406 SVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPI 585
+++ L LS N +SH+ + P+L+ L L R ++Q + A +GL L L L+GNP+
Sbjct: 1125 ALRWLYLSANRISHVSPGAIGPAPDLEKLYLDRNQLQGVPTVALEGLPTLLELQLSGNPL 1184
Query: 586 QSLALGAFSGL-PSLQKLVAVETNLASLEDFPIGHL-KTLKELNVAHNHIHSFKLPEYFS 759
++L GAF + SLQ L + L + L L+ L++ N + +
Sbjct: 1185 RALPDGAFRPVGGSLQHLFLNSSGLEQISPRAFSGLGPWLQSLHLQKNQLQAMPA---LP 1241
Query: 760 NLPNLEHLDLSKN 798
+L LE +DLS N
Sbjct: 1242 HLSQLELIDLSGN 1254
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/151 (25%), Positives = 60/151 (39%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C +P P+ ++LDL N+ + +F L L L C I ++ A
Sbjct: 990 CESRGLRAVPRGFPSHTQLLDLRRNHFPSVPRAAFPGLGGLVSLHLQHCGIAELEAGALA 1049
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L L L+ N + L+ A G P L L + + L L L++ H
Sbjct: 1050 GLASLIYLYLSDNRLAGLSAAALEGAPRLAYLYLERNRFQRVPGTALRALPGLFSLHLQH 1109
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
N + + P + L L LS N+I ++
Sbjct: 1110 NAVERLE-PGDLAGSQALRWLYLSANRISHV 1139
>ref|XP_540020.2| PREDICTED: similar to Toll-like receptor 3 precursor [Canis
familiaris].
Length = 905
Score = 79.0 bits (193), Expect = 7e-15
Identities = 63/231 (27%), Positives = 106/231 (45%), Gaps = 2/231 (0%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C L ++PD++P ++ +L+L+ N L L +F+ + +L +LD I ++ + Q
Sbjct: 38 CSHLKLTQVPDDLPANITVLNLTHNQLRRLPPANFTRYSQLTILDGGFNSISKLEPELCQ 97
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L L L N + L+ F +L +L + ++ +++ P LK L +L+++H
Sbjct: 98 KLPLLEILNLQHNELSHLSDQTFVFCVNLTELHLMSNSIKIIQNNPFRSLKNLVKLDLSH 157
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIE 900
N + S KL L NL+ L LS NKI + E L L
Sbjct: 158 NGLSSTKLGSQL-QLENLQELLLSNNKINVLRREELDFLGNSSLEKLELSSNPIKE--FS 214
Query: 901 PGAFYKI-RLNGLTLRS-NFNSSDVMKTCIQGLAGSKINQLGFGELKNERT 1047
PG F+ I +L GL+L + N S C++ L+ + I L + RT
Sbjct: 215 PGCFHAIGKLFGLSLNNVQLNPSLTENLCLE-LSNTSIQNLSLSNTQLHRT 264
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Frame = +1
Query: 418 LDLSFNYLSHLDSNSFSSFPELQVLDLSRCEI-QTIDDDAYQGLNYLSTLILTGNPIQSL 594
L+L+ N +S ++S +FS LQVLDL EI Q + ++GL + + L+ N L
Sbjct: 413 LNLTKNKISKIESGAFSWLGHLQVLDLGLNEIGQELTGQEWRGLENIVEIYLSYNKYLQL 472
Query: 595 ALGAFSGLPSLQKLVAVETNLASLED--FPIGHLKTLKELNVAHNHIHSFKLPEYFSNLP 768
+F+ +PSL++L+ T L +++ P L+ L L++++N+I + E L
Sbjct: 473 TSSSFALIPSLRRLMLRRTALRNVDSSPSPFHPLRNLNILDLSNNNIANIN-DELLEGLE 531
Query: 769 NLEHLDLSKNKIENIY 816
LE LD+ N + ++
Sbjct: 532 KLEILDMQHNNLARLW 547
>ref|XP_540535.1| PREDICTED: similar to netrin-G1 ligand [Canis familiaris].
Length = 639
Score = 75.5 bits (184), Expect = 8e-14
Identities = 45/151 (29%), Positives = 78/151 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C+ N ++PD I T+ ++L+L N + + NSF L++L LSR I+TI+ A+
Sbjct: 62 CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 121
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L+TL L N + ++ GAF L L++L + S+ + + +L+ L++
Sbjct: 122 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 181
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
S+ F L NL +L+L+ + I
Sbjct: 182 LKRLSYISEGAFEGLSNLRYLNLAMCNLREI 212
Score = 61.6 bits (148), Expect = 1e-09
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Frame = +1
Query: 268 VATIP--AMAFLSCLRSESW--DPCVQVVPNISYQCMELNFYKIPDNIPTSVKILDLS-F 432
+ TIP A +LS L+ E W + ++ +P+ + F +IP S++ LDL
Sbjct: 136 LTTIPNGAFVYLSKLK-ELWLRNNPIESIPSYA-------FNRIP-----SLRRLDLGEL 182
Query: 433 NYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFS 612
LS++ +F L+ L+L+ C ++ I + L L L L+GN + ++ G+F
Sbjct: 183 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQ 240
Query: 613 GLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLS 792
GL LQKL +++ + +E +L++L E+N+AHN++ + + F+ L +LE + L
Sbjct: 241 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLH 299
Query: 793 KN 798
N
Sbjct: 300 HN 301
>ref|XP_852381.1| PREDICTED: similar to CG12199-PA, isoform A [Canis familiaris].
Length = 507
Score = 75.5 bits (184), Expect = 8e-14
Identities = 49/160 (30%), Positives = 79/160 (49%)
Frame = +1
Query: 358 QCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAY 537
+C L +P IP + L L N ++ LD + L+ L L ++ ++ A+
Sbjct: 38 ECGALRLRGVPPGIPPGTQTLFLQDNSIARLDPGILAPLAALRRLYLHNNSLRALEPGAF 97
Query: 538 QGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVA 717
+ + L L LTGN ++ L +GAF+GL L+ L L L DF HL L+EL++
Sbjct: 98 RAQSCLLELALTGNRLRGLRVGAFAGLAQLRALYLAGNQLGQLLDFTFLHLPRLQELHLQ 157
Query: 718 HNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVL 837
N I + + + L +L LDLS+N + + E L+ L
Sbjct: 158 DNSIELLE-DQALAGLSSLALLDLSRNHLGTLSREALRPL 196
>ref|XP_540322.2| PREDICTED: similar to leucine rich repeat neuronal 6D [Canis
familiaris].
Length = 591
Score = 73.6 bits (179), Expect = 3e-13
Identities = 47/151 (31%), Positives = 72/151 (47%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C +P +P ++LDLS N+L L S L+ LDLS ++ ++ A+
Sbjct: 44 CAHRRLETVPGGLPLDTELLDLSGNHLWGLQQGMLSRLGLLKELDLSYNQLSILEPGAFH 103
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L TL L GN ++ + G FSGL +L+ L + D G L +L++L V
Sbjct: 104 GLQSLLTLRLQGNRLRIMGPGVFSGLSALKLLDLRLNQIVLFLDRAFGELGSLQQLEVGD 163
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
NH+ F P F+ L L L L + + +
Sbjct: 164 NHL-VFVAPGAFAGLAKLSALTLERCNLSTV 193
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,035,883
Number of extensions: 1006957
Number of successful extensions: 3135
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 2901
Number of HSP's successfully gapped: 140
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008162
(1070 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361406.1| PREDICTED: toll-like receptor 4-like [Sus sc... 490 e-139
Alignment gi|NP_001106510.1| toll-like receptor 4 precursor [Sus scrofa]. 490 e-139
Alignment gi|NP_999522.1| CD180 antigen [Sus scrofa]. 126 2e-29
Alignment gi|XP_001929222.3| PREDICTED: leucine-rich repeat and immunoglo... 89 3e-18
Alignment gi|XP_003360789.1| PREDICTED: leucine-rich repeat and immunoglo... 85 8e-17
Alignment gi|XP_003130742.1| PREDICTED: leucine-rich repeat and immunoglo... 85 8e-17
Alignment gi|XP_003125485.1| PREDICTED: leucine-rich repeat-containing pr... 80 1e-15
Alignment gi|NP_001090913.1| toll-like receptor 3 [Sus scrofa]. 77 2e-14
Alignment gi|XP_003122907.1| PREDICTED: leucine-rich repeat-containing pr... 75 5e-14
Alignment gi|XP_003355221.1| PREDICTED: leucine-rich repeat and immunoglo... 75 6e-14
>ref|XP_003361406.1| PREDICTED: toll-like receptor 4-like [Sus scrofa].
Length = 841
Score = 490 bits (1261), Expect = e-139
Identities = 248/267 (92%), Positives = 248/267 (92%)
Frame = +1
Query: 244 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 423
MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD
Sbjct: 1 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 60
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG 603
LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG
Sbjct: 61 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG 120
Query: 604 AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL 783
AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL
Sbjct: 121 AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL 180
Query: 784 DLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSS 963
DLSKNKIENIYHEHLQVLHQV FIEPGAF KIRLNGLTLRSNFNSS
Sbjct: 181 DLSKNKIENIYHEHLQVLHQVPLLNLSLDLSLNPLNFIEPGAFNKIRLNGLTLRSNFNSS 240
Query: 964 DVMKTCIQGLAGSKINQLGFGELKNER 1044
DVMKTCIQGLAGSKINQL GE KNER
Sbjct: 241 DVMKTCIQGLAGSKINQLVLGEFKNER 267
Score = 50.1 bits (118), Expect = 2e-06
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Frame = +1
Query: 394 NIPTSVKILDLSFNYLSHLDSNSFSSF--PELQVLDLSRCEIQTIDDDAYQGLNYLSTLI 567
N+P +++ LDLS N+LS S + F +L+ LDLS EI T+ + + GL L L
Sbjct: 371 NLP-NLQFLDLSGNHLSFKGCCSHNEFGTTKLKHLDLSFNEIITMKSN-FMGLEQLEYLD 428
Query: 568 LTGNPI-QSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKL 744
+ + Q+ F L +L L TN+ + L +L+ L +A N + L
Sbjct: 429 FQHSSLKQANDFSIFLSLRNLHYLDISYTNIHVVFRGIFAGLVSLQTLKMAGNSFQNNLL 488
Query: 745 PEYFSNLPNLEHLDLSKNKIENI----YHE--HLQVLH 840
P+ F++L NL LDLSK ++E + +H LQVL+
Sbjct: 489 PDVFTDLTNLILLDLSKCQLEQVSQRAFHSLPRLQVLN 526
>ref|NP_001106510.1| toll-like receptor 4 precursor [Sus scrofa].
Length = 841
Score = 490 bits (1261), Expect = e-139
Identities = 248/267 (92%), Positives = 248/267 (92%)
Frame = +1
Query: 244 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 423
MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD
Sbjct: 1 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 60
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG 603
LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG
Sbjct: 61 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG 120
Query: 604 AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL 783
AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL
Sbjct: 121 AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL 180
Query: 784 DLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSS 963
DLSKNKIENIYHEHLQVLHQV FIEPGAF KIRLNGLTLRSNFNSS
Sbjct: 181 DLSKNKIENIYHEHLQVLHQVPLLNLSLDLSLNPLNFIEPGAFNKIRLNGLTLRSNFNSS 240
Query: 964 DVMKTCIQGLAGSKINQLGFGELKNER 1044
DVMKTCIQGLAGSKINQL GE KNER
Sbjct: 241 DVMKTCIQGLAGSKINQLVLGEFKNER 267
Score = 50.1 bits (118), Expect = 2e-06
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 9/158 (5%)
Frame = +1
Query: 394 NIPTSVKILDLSFNYLSHLDSNSFSSF--PELQVLDLSRCEIQTIDDDAYQGLNYLSTLI 567
N+P +++ LDLS N+LS S + F +L+ LDLS EI T+ + + GL L L
Sbjct: 371 NLP-NLQFLDLSGNHLSFKGCCSHNEFGTTKLKHLDLSFNEIITMKSN-FMGLEQLEYLD 428
Query: 568 LTGNPI-QSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKL 744
+ + Q+ F L +L L TN+ + L +L+ L +A N + L
Sbjct: 429 FQHSSLKQANDFSIFLSLRNLHYLDISYTNIHVVFRGIFAGLVSLQTLKMAGNSFQNNLL 488
Query: 745 PEYFSNLPNLEHLDLSKNKIENI----YHE--HLQVLH 840
P+ F++L NL LDLSK ++E + +H LQVL+
Sbjct: 489 PDVFTDLTNLILLDLSKCQLEQVSQRAFHSLPRLQVLN 526
>ref|NP_999522.1| CD180 antigen [Sus scrofa].
Length = 661
Score = 126 bits (317), Expect = 2e-29
Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 1/238 (0%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C + N +Y C L +IPD +P + L+ FN+L + + +FS L LDL+RC
Sbjct: 28 CTEKEANRTYNCENLGLREIPDTLPNMTEFLEFGFNFLPTIQNTTFSRLINLVFLDLTRC 87
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
+I + +D +Q + L+T++LTGNP+ +A + +G SL+ L +T ++ LE P+ +
Sbjct: 88 QINWVHEDTFQNHHQLNTIVLTGNPLIFMAETSLNGPKSLKHLFLTQTGISHLEFIPVHN 147
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQVXXXXXXX 867
L+ L+ L++ NHI S LPE F NL+ LD N I I + + L Q
Sbjct: 148 LENLESLHLGSNHISSINLPENFPT-QNLKFLDFQNNAIHYISSKAINALEQATDLSLNF 206
Query: 868 XXXXXXXXFIEPGAFYKIRLNGLTLRS-NFNSSDVMKTCIQGLAGSKINQLGFGELKN 1038
IEPGAF N T +S NF + + ++GL S + L G ++
Sbjct: 207 NGNDIQG--IEPGAF-----NLKTFQSLNFGGTSNLAVVLKGLQNSTVQSLWLGTFED 257
Score = 48.9 bits (115), Expect = 5e-06
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Frame = +1
Query: 406 SVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPI 585
SV+ ++L ++ S+ F F LQ LDL+ +Q + +G+N L L+L N
Sbjct: 275 SVESINLQKHHFHGFSSSMFRCFTGLQELDLTATHLQELPS-GIEGMNSLKKLVLNANSF 333
Query: 586 QSLALGAFSGLPSLQKL-VAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPE-YFS 759
L + + PSL L + L + L+ L++L+++H+ I + +
Sbjct: 334 AHLCQISAASFPSLMDLYIKGNRKKLDLGARCLEKLEHLRKLDLSHSDIEASDCCDLQLK 393
Query: 760 NLPNLEHLDLSKNK 801
NLP+L++L+LS N+
Sbjct: 394 NLPHLQYLNLSYNE 407
>ref|XP_001929222.3| PREDICTED: leucine-rich repeat and immunoglobulin-like
domain-containing nogo receptor-interacting protein 1
isoform 1 [Sus scrofa].
Length = 620
Score = 89.4 bits (220), Expect = 3e-18
Identities = 55/160 (34%), Positives = 82/160 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C F +P+ IPT ++LDL N + L+ + F+SFP L+ L+L+ + ++ A+
Sbjct: 57 CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 116
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L TL L N ++ + LG F+GL +L KL E + L D+ L LK L V
Sbjct: 117 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 176
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLH 840
N + + FS L +LE L L K + +I E L LH
Sbjct: 177 NDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 215
>ref|XP_003360789.1| PREDICTED: leucine-rich repeat and immunoglobulin-like
domain-containing nogo receptor-interacting protein
2-like [Sus scrofa].
Length = 608
Score = 84.7 bits (208), Expect = 8e-17
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSVNPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 49.7 bits (117), Expect = 3e-06
Identities = 34/108 (31%), Positives = 57/108 (52%)
Frame = +1
Query: 481 LQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLA 660
L L ++ + T+ A++ L YL+ L L+ NPI ++ G FS L LQ+L V L
Sbjct: 253 LTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIEAGMFSDLIRLQELHIVGAQLR 312
Query: 661 SLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKI 804
++E L+ L+ LNV+ N + + + FS+ LE L ++ N +
Sbjct: 313 TIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRALEVLSINNNPL 359
>ref|XP_003130742.1| PREDICTED: leucine-rich repeat and immunoglobulin-like
domain-containing nogo receptor-interacting protein
2-like [Sus scrofa].
Length = 606
Score = 84.7 bits (208), Expect = 8e-17
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSVNPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 50.1 bits (118), Expect = 2e-06
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = +1
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSLA 597
L +Y LD +S L + LS + T+ A++ L YL+ L L+ NPI ++
Sbjct: 230 LEIDYWPLLDMMPANSLYGLNLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIE 289
Query: 598 LGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLE 777
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ LE
Sbjct: 290 AGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRALE 348
Query: 778 HLDLSKNKI 804
L ++ N +
Sbjct: 349 VLSINNNPL 357
>ref|XP_003125485.1| PREDICTED: leucine-rich repeat-containing protein 24 [Sus scrofa].
Length = 509
Score = 80.5 bits (197), Expect = 1e-15
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Frame = +1
Query: 280 PAMAFLSCL---RSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHL 450
PA+ LS L R P + + +C L IP IP + L L N ++ L
Sbjct: 6 PALLLLSLLCLPRCAVGCPAACRCYSATVECGALRLRVIPPGIPPGTQTLFLQDNSIARL 65
Query: 451 DSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQ 630
+ + L+ L L ++ ++ A++ + L L LTGN ++ L +GAFSGL L+
Sbjct: 66 EPGVLAPLASLRRLYLHNNSLRALEPGAFRAQSRLLELALTGNRLRGLRVGAFSGLAQLR 125
Query: 631 KLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIEN 810
L L L DF HL+ L+EL++ N I + + + L +L LDLS+N++
Sbjct: 126 VLYLAGNQLVQLLDFTFLHLQRLQELHLQENSIELLE-DQALAGLSSLALLDLSRNQLGT 184
Query: 811 IYHEHLQVL 837
I E LQ L
Sbjct: 185 ISREALQPL 193
>ref|NP_001090913.1| toll-like receptor 3 [Sus scrofa].
Length = 905
Score = 77.0 bits (188), Expect = 2e-14
Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 2/231 (0%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C L +IPD++P ++ +L+L+ N L L +F+ + +L LD I ++ + Q
Sbjct: 38 CSHLKLTQIPDDLPANITVLNLTHNQLRRLPPANFTIYSQLTTLDGGFNTISKLEPELCQ 97
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L L L N + L+ F +L +L + ++ +++ P +LK L +L+++H
Sbjct: 98 SLPLLEILNLQHNELSQLSDKTFIFCMNLIELHLMSNSIQKIQNNPFKNLKNLIKLDLSH 157
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIE 900
N + S KL L NL+ L L+ NKI + E L L
Sbjct: 158 NGLSSTKLGTQLQ-LENLQELLLANNKISALKREELDFLGNSSLKRLELSSNQIQE--FS 214
Query: 901 PGAFYKI-RLNGLTLRS-NFNSSDVMKTCIQGLAGSKINQLGFGELKNERT 1047
PG F+ I +L GL+L + + S K C++ L+ + I L ++ +T
Sbjct: 215 PGCFHAIGKLFGLSLNNVKLSPSLTEKLCLE-LSNTSIENLSLSNIQLYKT 264
>ref|XP_003122907.1| PREDICTED: leucine-rich repeat-containing protein 4C [Sus scrofa].
Length = 640
Score = 75.5 bits (184), Expect = 5e-14
Identities = 45/151 (29%), Positives = 78/151 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C+ N ++PD I T+ ++L+L N + + NSF L++L LSR I+TI+ A+
Sbjct: 62 CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 121
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L+TL L N + ++ GAF L L++L + S+ + + +L+ L++
Sbjct: 122 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 181
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
S+ F L NL +L+L+ + I
Sbjct: 182 LKRLSYISEGAFEGLSNLRYLNLAMCNLREI 212
Score = 61.6 bits (148), Expect = 7e-10
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Frame = +1
Query: 268 VATIP--AMAFLSCLRSESW--DPCVQVVPNISYQCMELNFYKIPDNIPTSVKILDLS-F 432
+ TIP A +LS L+ E W + ++ +P+ + F +IP S++ LDL
Sbjct: 136 LTTIPNGAFVYLSKLK-ELWLRNNPIESIPSYA-------FNRIP-----SLRRLDLGEL 182
Query: 433 NYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFS 612
LS++ +F L+ L+L+ C ++ I + L L L L+GN + ++ G+F
Sbjct: 183 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLVKLDELDLSGNHLSAIRPGSFQ 240
Query: 613 GLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLS 792
GL LQKL +++ + +E +L++L E+N+AHN++ + + F+ L +LE + L
Sbjct: 241 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLH 299
Query: 793 KN 798
N
Sbjct: 300 HN 301
>ref|XP_003355221.1| PREDICTED: leucine-rich repeat and immunoglobulin-like domain
containing-NOGO receptor-interacting protein 4-like [Sus
scrofa].
Length = 593
Score = 75.1 bits (183), Expect = 6e-14
Identities = 61/196 (31%), Positives = 87/196 (44%), Gaps = 12/196 (6%)
Frame = +1
Query: 262 LAVATIPAMA--------FLSCLRSESWDPCVQVVPNISYQ----CMELNFYKIPDNIPT 405
+AVAT+P A FL L + S C V S C +P +P
Sbjct: 1 MAVATVPKHAWPPWPPLLFLLLLPAGSSGGCPAVCDCTSQPRAVLCAHRRLEAVPGGLPL 60
Query: 406 SVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPI 585
++LDLS N L L S L+ LDLS ++ T++ A+QGL L TL + GN +
Sbjct: 61 DTELLDLSGNRLWGLQRGMLSRLGLLRELDLSYNQLSTLEPGAFQGLQSLLTLRMQGNRL 120
Query: 586 QSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNL 765
+ + G FSGL +L L L D L +L++L V NH+ F P F+ L
Sbjct: 121 RIMGPGVFSGLSALTLLDLRLNQLVLFLDGAFRELGSLQQLEVGDNHL-VFVAPGAFAGL 179
Query: 766 PNLEHLDLSKNKIENI 813
L L L + + +
Sbjct: 180 AKLSTLTLERCNLSTV 195
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,635,021
Number of extensions: 630242
Number of successful extensions: 2574
Number of sequences better than 1.0e-05: 89
Number of HSP's gapped: 2329
Number of HSP's successfully gapped: 147
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008162
(1070 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067272.1| toll-like receptor 4 precursor [Mus musculus]. 283 2e-76
Alignment gi|NP_032559.2| CD180 antigen precursor [Mus musculus]. 121 8e-28
Alignment gi|NP_851419.1| leucine-rich repeat and immunoglobulin-like dom... 89 4e-18
Alignment gi|NP_001159473.1| leucine-rich repeat and immunoglobulin-like ... 85 8e-17
Alignment gi|NP_001159472.1| leucine-rich repeat and immunoglobulin-like ... 85 8e-17
Alignment gi|NP_001159471.1| leucine-rich repeat and immunoglobulin-like ... 85 8e-17
Alignment gi|NP_780725.2| leucine-rich repeat and immunoglobulin-like dom... 85 8e-17
Alignment gi|NP_932787.1| leucine-rich repeat-containing protein 24 precu... 79 5e-15
Alignment gi|NP_001157792.1| chondroadherin-like [Mus musculus]. 78 1e-14
Alignment gi|NP_848840.3| leucine-rich repeat-containing protein 4C precu... 75 7e-14
>ref|NP_067272.1| toll-like receptor 4 precursor [Mus musculus].
Length = 835
Score = 283 bits (724), Expect = 2e-76
Identities = 154/271 (56%), Positives = 190/271 (70%)
Frame = +1
Query: 244 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 423
M+P LA I A+ F SCL S +PC++VVPNI+YQCM+ K+PD+IP+S K +D
Sbjct: 1 MMPPWLLARTLIMAL-FFSCLTPGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNID 59
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG 603
LSFN L L S SFS+F ELQ LDLSRCEI+TI+D A+ GL++LS LILTGNPIQS + G
Sbjct: 60 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 119
Query: 604 AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL 783
+FSGL SL+ LVAVET LASLE FPIG L TLK+LNVAHN IHS KLP YFSNL NL H+
Sbjct: 120 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 179
Query: 784 DLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSS 963
DLS N I+ I LQ L + FI+ AF I+L+ LTLR NFNSS
Sbjct: 180 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSS 239
Query: 964 DVMKTCIQGLAGSKINQLGFGELKNERTWKV 1056
++MKTC+Q LAG +++L GE K+ER ++
Sbjct: 240 NIMKTCLQNLAGLHVHRLILGEFKDERNLEI 270
>ref|NP_032559.2| CD180 antigen precursor [Mus musculus].
Length = 661
Score = 121 bits (304), Expect = 8e-28
Identities = 81/253 (32%), Positives = 122/253 (48%), Gaps = 1/253 (0%)
Frame = +1
Query: 283 AMAFLSCLRSESWDP-CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSN 459
A+ SC + S D C++ N +Y C L +IP +P S + L+ SFN L + +
Sbjct: 12 ALFLASCRATTSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT 71
Query: 460 SFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLV 639
+FS L LDL+RC+I I +D +Q + L TL+LT NP+ +A A SG +L+ L
Sbjct: 72 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 131
Query: 640 AVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYH 819
++T ++S++ P+ + KTL+ L + NHI S KLP+ F L+ LD N I +
Sbjct: 132 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSK 190
Query: 820 EHLQVLHQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSSDVMKTCIQGLAG 999
E + L Q IE GAF L NF + + +GL
Sbjct: 191 EDMSSLQQATNLSLNLNGNDIAG--IELGAFDSAVFQSL----NFGGTQNLLVIFKGLKN 244
Query: 1000 SKINQLGFGELKN 1038
S I L G ++
Sbjct: 245 STIQSLWLGTFED 257
Score = 53.9 bits (128), Expect = 2e-07
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 2/134 (1%)
Frame = +1
Query: 406 SVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPI 585
SV+ ++L +Y ++ SN+F F LQ LDL+ + + GL+ L L+L+ N
Sbjct: 275 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKF 333
Query: 586 QSLALGAFSGLPSLQKL-VAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPE-YFS 759
++L + S PSL L + T L + +L+ L+EL+++H+ I +
Sbjct: 334 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 393
Query: 760 NLPNLEHLDLSKNK 801
NL +L+ L+LS N+
Sbjct: 394 NLSHLQSLNLSYNE 407
>ref|NP_851419.1| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 precursor [Mus musculus].
Length = 614
Score = 89.4 bits (220), Expect = 4e-18
Identities = 55/160 (34%), Positives = 82/160 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C F +P+ IPT ++LDL N + L+ + F+SFP L+ L+L+ + ++ A+
Sbjct: 51 CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 110
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L TL L N ++ + LG F+GL +L KL E + L D+ L LK L V
Sbjct: 111 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 170
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLH 840
N + + FS L +LE L L K + +I E L LH
Sbjct: 171 NDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 209
>ref|NP_001159473.1| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 2 precursor [Mus musculus].
Length = 606
Score = 85.1 bits (209), Expect = 8e-17
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLLAIPEGIPIETKILDLSKNRLKSINPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 50.1 bits (118), Expect = 3e-06
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 421 DLSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSL 594
+L +Y LD +S L + LS + T+ A++ L YL+ L L+ NPI ++
Sbjct: 229 NLEIDYWPLLDLMPANSLYGLNLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTI 288
Query: 595 ALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNL 774
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ L
Sbjct: 289 EAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRAL 347
Query: 775 EHLDLSKNKI 804
E L ++ N +
Sbjct: 348 EVLSINNNPL 357
>ref|NP_001159472.1| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 2 precursor [Mus musculus].
Length = 606
Score = 85.1 bits (209), Expect = 8e-17
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLLAIPEGIPIETKILDLSKNRLKSINPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 50.1 bits (118), Expect = 3e-06
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 421 DLSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSL 594
+L +Y LD +S L + LS + T+ A++ L YL+ L L+ NPI ++
Sbjct: 229 NLEIDYWPLLDLMPANSLYGLNLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTI 288
Query: 595 ALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNL 774
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ L
Sbjct: 289 EAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRAL 347
Query: 775 EHLDLSKNKI 804
E L ++ N +
Sbjct: 348 EVLSINNNPL 357
>ref|NP_001159471.1| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 2 precursor [Mus musculus].
Length = 606
Score = 85.1 bits (209), Expect = 8e-17
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLLAIPEGIPIETKILDLSKNRLKSINPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 50.1 bits (118), Expect = 3e-06
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 421 DLSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSL 594
+L +Y LD +S L + LS + T+ A++ L YL+ L L+ NPI ++
Sbjct: 229 NLEIDYWPLLDLMPANSLYGLNLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTI 288
Query: 595 ALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNL 774
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ L
Sbjct: 289 EAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRAL 347
Query: 775 EHLDLSKNKI 804
E L ++ N +
Sbjct: 348 EVLSINNNPL 357
>ref|NP_780725.2| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 2 precursor [Mus musculus].
Length = 606
Score = 85.1 bits (209), Expect = 8e-17
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLLAIPEGIPIETKILDLSKNRLKSINPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 50.1 bits (118), Expect = 3e-06
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = +1
Query: 421 DLSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSL 594
+L +Y LD +S L + LS + T+ A++ L YL+ L L+ NPI ++
Sbjct: 229 NLEIDYWPLLDLMPANSLYGLNLTSLSITNTNLSTVPFLAFKHLVYLTHLNLSYNPISTI 288
Query: 595 ALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNL 774
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ L
Sbjct: 289 EAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRAL 347
Query: 775 EHLDLSKNKI 804
E L ++ N +
Sbjct: 348 EVLSINNNPL 357
>ref|NP_932787.1| leucine-rich repeat-containing protein 24 precursor [Mus musculus].
Length = 521
Score = 79.3 bits (194), Expect = 5e-15
Identities = 53/160 (33%), Positives = 80/160 (50%)
Frame = +1
Query: 358 QCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAY 537
+C L +P IP + L L N ++HL+ S + L+ L L ++ ++ A+
Sbjct: 43 ECGALRLRVVPPGIPPGTQTLFLQDNSIAHLEQGSLAPLAALRHLYLHNNTLRALESGAF 102
Query: 538 QGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVA 717
+ L L LTGN ++ L GAF GL L+ L LA L DF HL L+EL++
Sbjct: 103 RAQPRLLELALTGNRLRGLRGGAFVGLVQLRVLYLAGNQLAKLLDFTFLHLPRLQELHLQ 162
Query: 718 HNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVL 837
N I + + + L +L LDLS+N++ I E LQ L
Sbjct: 163 ENSIELLE-DQALAGLSSLALLDLSRNQLGTISKEALQPL 201
>ref|NP_001157792.1| chondroadherin-like [Mus musculus].
Length = 748
Score = 77.8 bits (190), Expect = 1e-14
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 9/190 (4%)
Frame = +1
Query: 286 MAFLSCLRSESWDPCVQVVPNISY--------QCMELNFYKIPDNIPTSVKILDLSFNYL 441
+ F+ L+S +W Q P C N ++P+ IP + LDL N L
Sbjct: 14 LLFMVLLQSPAWHVAAQRCPQTCVCDNSRRHVTCRHQNLTEVPNTIPELTQRLDLQGNIL 73
Query: 442 SHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLP 621
L + +F P L LDL C+++ + + A++GL L L L N + +L A GL
Sbjct: 74 KVLPAAAFQDLPHLTHLDLRNCQVEMVAEGAFRGLGRLLLLNLASNRLSTLPQEALDGLG 133
Query: 622 SLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEY-FSNLPNLEHLDLSKN 798
SL++L L L G L +L LN+AHN + LP F L L LS N
Sbjct: 134 SLRRLELEGNMLEELRPGTFGALGSLTTLNLAHNAL--VYLPAMAFQGLLRTRWLQLSHN 191
Query: 799 KIENIYHEHL 828
+ + E L
Sbjct: 192 ALSVLAPEAL 201
Score = 51.6 bits (122), Expect = 1e-06
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = +1
Query: 406 SVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPI 585
+++ L LS N+++ + + EL+ L L R ++ + A +GL L L L+GNP+
Sbjct: 545 ALRCLYLSGNHITQVSPGALGPARELEKLHLDRNRLREVPTGALEGLPALKELQLSGNPL 604
Query: 586 QSLALGAFSGL-PSLQKLVAVETNLASLEDFPIGHL-KTLKELNVAHNHIHSFKLPEYFS 759
++L GAF + SLQ+L ++L + L K L+ L + N + S P
Sbjct: 605 RALPDGAFQPVGRSLQQLFLNSSDLEQISPRAFSGLGKGLRSLYLHKNQLQSLPAP---L 661
Query: 760 NLPNLEHLDLSKN 798
L LE +DLS N
Sbjct: 662 GLSGLELVDLSGN 674
Score = 49.7 bits (117), Expect = 4e-06
Identities = 37/134 (27%), Positives = 63/134 (47%)
Frame = +1
Query: 406 SVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPI 585
S++ L+L N L L +F + L L+L+ + + A+QGL L L+ N +
Sbjct: 134 SLRRLELEGNMLEELRPGTFGALGSLTTLNLAHNALVYLPAMAFQGLLRTRWLQLSHNAL 193
Query: 586 QSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNL 765
LA A +GLP+L++L L +L + ++L L + HN + ++ E L
Sbjct: 194 SVLAPEALAGLPALRRLSLHHNELQALPGAALSQARSLARLELGHNPL-TYTGEEDGLAL 252
Query: 766 PNLEHLDLSKNKIE 807
P L L L ++
Sbjct: 253 PGLRELALDHGSLQ 266
>ref|NP_848840.3| leucine-rich repeat-containing protein 4C precursor [Mus musculus].
Length = 640
Score = 75.5 bits (184), Expect = 7e-14
Identities = 45/151 (29%), Positives = 78/151 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C+ N ++PD I T+ ++L+L N + + NSF L++L LSR I+TI+ A+
Sbjct: 62 CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 121
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L+TL L N + ++ GAF L L++L + S+ + + +L+ L++
Sbjct: 122 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 181
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
S+ F L NL +L+L+ + I
Sbjct: 182 LKRLSYISEGAFEGLSNLRYLNLAMCNLREI 212
Score = 61.6 bits (148), Expect = 1e-09
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Frame = +1
Query: 268 VATIP--AMAFLSCLRSESW--DPCVQVVPNISYQCMELNFYKIPDNIPTSVKILDLS-F 432
+ TIP A +LS L+ E W + ++ +P+ + F +IP S++ LDL
Sbjct: 136 LTTIPNGAFVYLSKLK-ELWLRNNPIESIPSYA-------FNRIP-----SLRRLDLGEL 182
Query: 433 NYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFS 612
LS++ +F L+ L+L+ C ++ I + L L L L+GN + ++ G+F
Sbjct: 183 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQ 240
Query: 613 GLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLS 792
GL LQKL +++ + +E +L++L E+N+AHN++ + + F+ L +LE + L
Sbjct: 241 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLH 299
Query: 793 KN 798
N
Sbjct: 300 HN 301
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,513,359
Number of extensions: 841448
Number of successful extensions: 3090
Number of sequences better than 1.0e-05: 108
Number of HSP's gapped: 2790
Number of HSP's successfully gapped: 175
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008162
(1070 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612564.1| toll-like receptor 4 precursor [Homo sapiens]. 377 e-104
Alignment gi|NP_005573.2| CD180 antigen precursor [Homo sapiens]. 129 5e-30
Alignment gi|NP_116197.4| leucine-rich repeat neuronal 6A [Homo sapiens]. 89 5e-18
Alignment gi|NP_689783.1| leucine-rich repeat and immunoglobulin-like dom... 85 1e-16
Alignment gi|NP_003256.1| toll-like receptor 3 precursor [Homo sapiens]. 78 1e-14
Alignment gi|NP_001004432.1| leucine-rich repeat and immunoglobulin-like ... 76 5e-14
Alignment gi|NP_065980.1| leucine-rich repeat-containing protein 4C precu... 75 8e-14
Alignment gi|NP_612490.1| chondroadherin-like protein precursor [Homo sap... 75 1e-13
Alignment gi|NP_001019849.2| leucine-rich repeat-containing protein 24 pr... 74 2e-13
Alignment gi|NP_056379.1| leucine-rich repeat transmembrane neuronal prot... 72 1e-12
>ref|NP_612564.1| toll-like receptor 4 precursor [Homo sapiens].
Length = 839
Score = 377 bits (967), Expect = e-104
Identities = 194/266 (72%), Positives = 219/266 (82%)
Frame = +1
Query: 244 MIPRIRLAVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILD 423
M+ RLA IPAMAFLSC+R ESW+PCV+VVPNI+YQCMELNFYKIPDN+P S K LD
Sbjct: 1 MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 60
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALG 603
LSFN L HL S SF SFPELQVLDLSRCEIQTI+D AYQ L++LSTLILTGNPIQSLALG
Sbjct: 61 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 120
Query: 604 AFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHL 783
AFSGL SLQKLVAVETNLASLE+FPIGHLKTLKELNVAHN I SFKLPEYFSNL NLEHL
Sbjct: 121 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 180
Query: 784 DLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSS 963
DLS NKI++IY L+VLHQ+ FI+PGAF +IRL+ LTLR+NF+S
Sbjct: 181 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 240
Query: 964 DVMKTCIQGLAGSKINQLGFGELKNE 1041
+VMKTCIQGLAG ++++L GE +NE
Sbjct: 241 NVMKTCIQGLAGLEVHRLVLGEFRNE 266
Score = 48.9 bits (115), Expect = 8e-06
Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 49/181 (27%)
Frame = +1
Query: 403 TSVKILDLSFN-------------YLSHLD--------SNSFSSFPELQ---VLDLSRCE 510
TS+K LDLSFN L HLD + FS F L+ LD+S
Sbjct: 399 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 458
Query: 511 IQTIDDDAYQGLNYLSTLILTGNPIQS-------------------------LALGAFSG 615
+ + + GL+ L L + GN Q L+ AF+
Sbjct: 459 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 518
Query: 616 LPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSK 795
L SLQ L N SL+ FP L +L+ L+ + NHI + K E +L L+L++
Sbjct: 519 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 578
Query: 796 N 798
N
Sbjct: 579 N 579
>ref|NP_005573.2| CD180 antigen precursor [Homo sapiens].
Length = 661
Score = 129 bits (324), Expect = 5e-30
Identities = 81/247 (32%), Positives = 122/247 (49%), Gaps = 1/247 (0%)
Frame = +1
Query: 301 CLRSESWDP-CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFP 477
C SWD C++ N +Y C L +IPD +P + + L+ SFN+L + + +FS
Sbjct: 18 CKVITSWDQMCIEKEANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLM 77
Query: 478 ELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNL 657
L LDL+RC+I I +D +Q + LSTL+LTGNP+ +A + +G SL+ L ++T +
Sbjct: 78 NLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGI 137
Query: 658 ASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVL 837
++LE P+ +L+ L+ L + NHI S K P+ F NL+ LD N I I E ++ L
Sbjct: 138 SNLEFIPVHNLENLESLYLGSNHISSIKFPKDFP-ARNLKVLDFQNNAIHYISREDMRSL 196
Query: 838 HQVXXXXXXXXXXXXXXXFIEPGAFYKIRLNGLTLRSNFNSSDVMKTCIQGLAGSKINQL 1017
Q IE GAF L NF + + GL S L
Sbjct: 197 EQAINLSLNFNGNNVKG--IELGAFDSTIFQSL----NFGGTPNLSVIFNGLQNSTTQSL 250
Query: 1018 GFGELKN 1038
G ++
Sbjct: 251 WLGTFED 257
>ref|NP_116197.4| leucine-rich repeat neuronal 6A [Homo sapiens].
Length = 620
Score = 89.4 bits (220), Expect = 5e-18
Identities = 55/160 (34%), Positives = 82/160 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C F +P+ IPT ++LDL N + L+ + F+SFP L+ L+L+ + ++ A+
Sbjct: 57 CHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 116
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L TL L N ++ + LG F+GL +L KL E + L D+ L LK L V
Sbjct: 117 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 176
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLH 840
N + + FS L +LE L L K + +I E L LH
Sbjct: 177 NDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 215
>ref|NP_689783.1| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 2 precursor [Homo sapiens].
Length = 606
Score = 84.7 bits (208), Expect = 1e-16
Identities = 59/173 (34%), Positives = 82/173 (47%)
Frame = +1
Query: 328 CVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRC 507
C N S C IP+ IP KILDLS N L ++ F S+P L+ +DLS
Sbjct: 32 CECSAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLKSVNPEEFISYPLLEEIDLSDN 91
Query: 508 EIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGH 687
I ++ A+ L L +L L GN ++ + LG F+GL +L KL E + L D+
Sbjct: 92 IIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQD 151
Query: 688 LKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQV 846
L LK L V N + + FS L +LE L L K + + E L L +
Sbjct: 152 LHNLKSLEVGDNDL-VYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSL 203
Score = 50.1 bits (118), Expect = 4e-06
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Frame = +1
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLS--RCEIQTIDDDAYQGLNYLSTLILTGNPIQSLA 597
L +Y LD +S L + LS + T+ A++ L YL+ L L+ NPI ++
Sbjct: 230 LEIDYWPLLDMMPANSLYGLNLTSLSVTNTNLSTVPFLAFKHLVYLTHLNLSYNPISTIE 289
Query: 598 LGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLE 777
G FS L LQ+L V L ++E L+ L+ LNV+ N + + + FS+ LE
Sbjct: 290 AGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLE-ENVFSSPRALE 348
Query: 778 HLDLSKNKI 804
L ++ N +
Sbjct: 349 VLSINNNPL 357
>ref|NP_003256.1| toll-like receptor 3 precursor [Homo sapiens].
Length = 904
Score = 78.2 bits (191), Expect = 1e-14
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 2/221 (0%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C L ++PD++PT++ +L+L+ N L L + +F+ + +L LD+ I ++ + Q
Sbjct: 37 CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ 96
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
L L L L N + L+ F+ +L +L + ++ +++ P K L L+++H
Sbjct: 97 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 156
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENIYHEHLQVLHQVXXXXXXXXXXXXXXXFIE 900
N + S KL L NL+ L LS NKI+ + E L +
Sbjct: 157 NGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIF--ANSSLKKLELSSNQIKEFS 213
Query: 901 PGAFYKI-RLNGLTLRS-NFNSSDVMKTCIQGLAGSKINQL 1017
PG F+ I RL GL L + S K C++ LA + I L
Sbjct: 214 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE-LANTSIRNL 253
Score = 50.4 bits (119), Expect = 3e-06
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Frame = +1
Query: 424 LSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDD--DAYQGLNYLSTLILTGNPIQSLA 597
LS+N L NSF+ P LQ L L R ++ +D +Q L L+ L L+ N I ++
Sbjct: 463 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 522
Query: 598 LGAFSGLPSLQKLVAVETNLASL-----EDFPIGHLKTLKELNVAHNHIHSF-KLP-EYF 756
GL L+ L NLA L PI LK L L++ + + F ++P E F
Sbjct: 523 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 582
Query: 757 SNLPNLEHLDLSKNKIENI 813
+L L+ +DL N + +
Sbjct: 583 KDLFELKIIDLGLNNLNTL 601
>ref|NP_001004432.1| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 4 precursor [Homo sapiens].
Length = 593
Score = 76.3 bits (186), Expect = 5e-14
Identities = 57/182 (31%), Positives = 80/182 (43%), Gaps = 4/182 (2%)
Frame = +1
Query: 280 PAMAFLSCLRSESWDPCVQVVPNISYQ----CMELNFYKIPDNIPTSVKILDLSFNYLSH 447
P + FL L S C V S C +P +P ++LDLS N L
Sbjct: 15 PPLLFLLLLPGGSGGSCPAVCDCTSQPQAVLCGHRQLEAVPGGLPLDTELLDLSGNRLWG 74
Query: 448 LDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPSL 627
L S LQ LDLS ++ T++ A+ GL L TL L GN ++ + G FSGL +L
Sbjct: 75 LQQGMLSRLSLLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIMGPGVFSGLSAL 134
Query: 628 QKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKIE 807
L + D G L +L++L V NH+ F P F+ L L L L + +
Sbjct: 135 TLLDLRLNQIVLFLDGAFGELGSLQKLEVGDNHL-VFVAPGAFAGLAKLSTLTLERCNLS 193
Query: 808 NI 813
+
Sbjct: 194 TV 195
>ref|NP_065980.1| leucine-rich repeat-containing protein 4C precursor [Homo sapiens].
Length = 640
Score = 75.5 bits (184), Expect = 8e-14
Identities = 45/151 (29%), Positives = 78/151 (51%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C+ N ++PD I T+ ++L+L N + + NSF L++L LSR I+TI+ A+
Sbjct: 62 CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 121
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L+TL L N + ++ GAF L L++L + S+ + + +L+ L++
Sbjct: 122 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 181
Query: 721 NHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
S+ F L NL +L+L+ + I
Sbjct: 182 LKRLSYISEGAFEGLSNLRYLNLAMCNLREI 212
Score = 61.6 bits (148), Expect = 1e-09
Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 5/182 (2%)
Frame = +1
Query: 268 VATIP--AMAFLSCLRSESW--DPCVQVVPNISYQCMELNFYKIPDNIPTSVKILDLS-F 432
+ TIP A +LS L+ E W + ++ +P+ + F +IP S++ LDL
Sbjct: 136 LTTIPNGAFVYLSKLK-ELWLRNNPIESIPSYA-------FNRIP-----SLRRLDLGEL 182
Query: 433 NYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFS 612
LS++ +F L+ L+L+ C ++ I + L L L L+GN + ++ G+F
Sbjct: 183 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQ 240
Query: 613 GLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLS 792
GL LQKL +++ + +E +L++L E+N+AHN++ + + F+ L +LE + L
Sbjct: 241 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLH 299
Query: 793 KN 798
N
Sbjct: 300 HN 301
>ref|NP_612490.1| chondroadherin-like protein precursor [Homo sapiens].
Length = 762
Score = 74.7 bits (182), Expect = 1e-13
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Frame = +1
Query: 361 CMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQ 540
C N ++PD IP + LDL N L + + +F P L LDL CE++ + + A++
Sbjct: 48 CRYQNLTEVPDAIPELTQRLDLQGNLLKVIPAAAFQGVPHLTHLDLRHCEVELVAEGAFR 107
Query: 541 GLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAH 720
GL L L L N ++ L A GL SL++L L L G L L LN+AH
Sbjct: 108 GLGRLLLLNLASNHLRELPQEALDGLGSLRRLELEGNALEELRPGTFGALGALATLNLAH 167
Query: 721 NHIHSFKLPEY-FSNLPNLEHLDLSKNKIENIYHEHL 828
N + LP F L + L LS N + + E L
Sbjct: 168 NAL--VYLPAMAFQGLLRVRWLRLSHNALSVLAPEAL 202
>ref|NP_001019849.2| leucine-rich repeat-containing protein 24 precursor [Homo sapiens].
Length = 513
Score = 73.9 bits (180), Expect = 2e-13
Identities = 57/191 (29%), Positives = 90/191 (47%)
Frame = +1
Query: 265 AVATIPAMAFLSCLRSESWDPCVQVVPNISYQCMELNFYKIPDNIPTSVKILDLSFNYLS 444
A A +P + L LR+ P + + +C L +P IP + L L N ++
Sbjct: 5 APALLPLLLLLLPLRAAGC-PAACRCYSATVECGALRLRVVPLGIPPGTQTLFLQDNNIA 63
Query: 445 HLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLALGAFSGLPS 624
L+ + + L+ L L ++ ++ A++ L L LT N ++ L GAF GL
Sbjct: 64 RLEPGALAPLAALRRLYLHNNSLRALEAGAFRAQPRLLELALTSNRLRGLRSGAFVGLAQ 123
Query: 625 LQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLEHLDLSKNKI 804
L+ L LA L DF HL L+EL++ N I + + + L +L LDLS+N++
Sbjct: 124 LRVLYLAGNQLARLLDFTFLHLPRLQELHLQENSIELLE-DQALAGLSSLALLDLSRNQL 182
Query: 805 ENIYHEHLQVL 837
I E LQ L
Sbjct: 183 GTISREALQPL 193
Score = 50.8 bits (120), Expect = 2e-06
Identities = 39/131 (29%), Positives = 66/131 (50%)
Frame = +1
Query: 406 SVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPI 585
+++ L L N L L++ +F + P L L L+ ++ + A+ GL L L L GN +
Sbjct: 75 ALRRLYLHNNSLRALEAGAFRAQPRLLELALTSNRLRGLRSGAFVGLAQLRVLYLAGNQL 134
Query: 586 QSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNL 765
L F LP LQ+L E ++ LED + L +L L+++ N + + E L
Sbjct: 135 ARLLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDLSRNQLGTIS-REALQPL 193
Query: 766 PNLEHLDLSKN 798
+L+ L L++N
Sbjct: 194 ASLQVLRLTEN 204
>ref|NP_056379.1| leucine-rich repeat transmembrane neuronal protein 2 precursor
[Homo sapiens].
Length = 516
Score = 71.6 bits (174), Expect = 1e-12
Identities = 47/153 (30%), Positives = 79/153 (51%)
Frame = +1
Query: 355 YQCMELNFYKIPDNIPTSVKILDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDA 534
+ C F+ +P+ L L N+++ L+ + F+SF +L L L +I T+ +DA
Sbjct: 45 FYCDSQGFHSVPNATDKGSLGLSLRHNHITELERDQFASFSQLTWLHLDHNQISTVKEDA 104
Query: 535 YQGLNYLSTLILTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNV 714
+QGL L LIL+ N I L F+ L +LQ L L+SL L+ L+ L++
Sbjct: 105 FQGLYKLKELILSSNKIFYLPNTTFTQLINLQNLDLSFNQLSSLHPELFYGLRKLQTLHL 164
Query: 715 AHNHIHSFKLPEYFSNLPNLEHLDLSKNKIENI 813
N + + + F + +LE LDLS N++ ++
Sbjct: 165 RSNSLRTIPV-RLFWDCRSLEFLDLSTNRLRSL 196
Score = 49.3 bits (116), Expect = 6e-06
Identities = 42/132 (31%), Positives = 61/132 (46%)
Frame = +1
Query: 418 LDLSFNYLSHLDSNSFSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQSLA 597
LDLSFN LS L F +LQ L L ++TI + L L L+ N ++SLA
Sbjct: 138 LDLSFNQLSSLHPELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEFLDLSTNRLRSLA 197
Query: 598 LGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLKELNVAHNHIHSFKLPEYFSNLPNLE 777
F+GL L++L L + L +L L + N I + ++ LE
Sbjct: 198 RNGFAGLIKLRELHLEHNQLTKINFAHFLRLSSLHTLFLQWNKISNLTCGMEWT-WGTLE 256
Query: 778 HLDLSKNKIENI 813
LDL+ N+I+ I
Sbjct: 257 KLDLTGNEIKAI 268
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,369,328
Number of extensions: 995382
Number of successful extensions: 3585
Number of sequences better than 1.0e-05: 120
Number of HSP's gapped: 3255
Number of HSP's successfully gapped: 190
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008162
(1070 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118734.1| Sus scrofa unplaced genomic scaffold ChrUScaf2125 1045 0.0
Sscrofa_Chr01 1045 0.0
>gb|JH118734.1| Sus scrofa unplaced genomic scaffold ChrUScaf2125
Length = 112571
Score = 1045 bits (527), Expect = 0.0
Identities = 562/571 (98%), Gaps = 2/571 (0%)
Strand = Plus / Plus
Query: 502 agatgtgaaattcagacaattgacgatgatgcatatcagggcctaaattacctttccaca 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39459 agatgtgaaattcagacaattgacgatgatgcatatcagggcctaaattacctttccacc 39518
Query: 562 ttgatactgacgggaaatcctatccagagtttagccctgggagccttttctggactacca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39519 ttgatactgacgggaaatcctatccagagtttagccctgggagccttttctggactacca 39578
Query: 622 agtttacagaagctggttgccgttgagacaaacctagcatctctagaggacttccccatt 681
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 39579 agtttacagaagctggttgccgttgagacaaacctagcgtctctagaggacttccccatt 39638
Query: 682 ggacatcttaaaaccttgaaggagcttaatgtggctcacaatcatatccattctttcaag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39639 ggacatcttaaaaccttgaaggagcttaatgtggctcacaatcatatccattctttcaag 39698
Query: 742 ttacctgaatatttttctaacctgcccaacctggagcatttggatctttctaagaacaaa 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39699 ttacctgaatatttttctaacctgcccaacctggagcatttggatctttctaagaacaaa 39758
Query: 802 atcgaaaatatttatcatgaacacttgcaggttctacatcaagtgcccctacacaatctc 861
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 39759 atcgaaaatatttatcatgaacacttgcaggttctacatcaagtgcccctactcaatctc 39818
Query: 862 tctttagacttgtccctgaaccctttaaactttattgaaccaggtgccttttacaaaatt 921
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 39819 tctttagacttgtccctgaaccctttaaactttattgaaccaggtgcctttaacaaaatt 39878
Query: 922 aggctcaatggattgactttgcgaagtaattttaatagttcggatgtaatgaaaacttgt 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39879 aggctcaatggattgactttgcgaagtaattttaatagttcggatgtaatgaaaacttgt 39938
Query: 982 attcaaggtctggctggttcaaaaatcaatcagttgggttttggagaattaaaaaatgaa 1041
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct: 39939 attcaaggtctggctggttcaaaaatcaatcagttggttttgggagaatttaaaaatgaa 39998
Query: 1042 a-gaacttggaaag-tttgacaaatctgtcc 1070
| |||||||||||| ||||||||||||||||
Sbjct: 39999 aggaacttggaaagttttgacaaatctgtcc 40029
Score = 648 bits (327), Expect = 0.0
Identities = 337/339 (99%), Gaps = 1/339 (0%)
Strand = Plus / Plus
Query: 1 tcttcttcta-cttcccctctggtgacagaggagataaatattagagaaacaaaagtcca 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32416 tcttcttctaacttcccctctggtgacagaggagataaatattagagaaacaaaagtcca 32475
Query: 60 gaatgcgaaggctgccattctcacttcctcttaccccttaacccagtgctgctttgaata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32476 gaatgcgaaggctgccattctcacttcctcttaccccttaacccagtgctgctttgaata 32535
Query: 120 gagtcagtgcccccgggcagtgtgctgaggagagaagacggcagtgcctcggaggctgct 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 32536 gagtcagtgcccccgggcagtgtgctgaggagagaagacggcagtgcctgggaggctgct 32595
Query: 180 ctgaccagcagatacagagggtcatgctttctccgggtcacttctgttcacggaaaatgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32596 ctgaccagcagatacagagggtcatgctttctccgggtcacttctgttcacggaaaatgc 32655
Query: 240 caggatgattcctcgcatccgcctggctgtggccacgatcccagccatggcctttctctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32656 caggatgattcctcgcatccgcctggctgtggccacgatcccagccatggcctttctctc 32715
Query: 300 ctgcctgagatctgagagctgggacccttgcgtgcaggt 338
|||||||||||||||||||||||||||||||||||||||
Sbjct: 32716 ctgcctgagatctgagagctgggacccttgcgtgcaggt 32754
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 334 caggtggttcctaacattagttaccaatgcatggagctgaatttctacaaaatccctgac 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36620 caggtggttcctaacattagttaccaatgcatggagctgaatttctacaaaatccctgac 36679
Query: 394 aacatccccacatcagtcaagatactggacctgagctttaactacctgagtcatttagac 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36680 aacatccccacatcagtcaagatactggacctgagctttaactacctgagtcatttagac 36739
Query: 454 agcaatagcttctccagctttccagaactgcaggtgctggatttatccag 503
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36740 agcaatagcttctccagctttccagaactgcaggtgctggatttatccag 36789
>Sscrofa_Chr01
|| Length = 315321322
Score = 1045 bits (527), Expect = 0.0
Identities = 562/571 (98%), Gaps = 2/571 (0%)
Strand = Plus / Plus
Query: 502 agatgtgaaattcagacaattgacgatgatgcatatcagggcctaaattacctttccaca 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289782774 agatgtgaaattcagacaattgacgatgatgcatatcagggcctaaattacctttccacc 289782833
Query: 562 ttgatactgacgggaaatcctatccagagtttagccctgggagccttttctggactacca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289782834 ttgatactgacgggaaatcctatccagagtttagccctgggagccttttctggactacca 289782893
Query: 622 agtttacagaagctggttgccgttgagacaaacctagcatctctagaggacttccccatt 681
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 289782894 agtttacagaagctggttgccgttgagacaaacctagcgtctctagaggacttccccatt 289782953
Query: 682 ggacatcttaaaaccttgaaggagcttaatgtggctcacaatcatatccattctttcaag 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289782954 ggacatcttaaaaccttgaaggagcttaatgtggctcacaatcatatccattctttcaag 289783013
Query: 742 ttacctgaatatttttctaacctgcccaacctggagcatttggatctttctaagaacaaa 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289783014 ttacctgaatatttttctaacctgcccaacctggagcatttggatctttctaagaacaaa 289783073
Query: 802 atcgaaaatatttatcatgaacacttgcaggttctacatcaagtgcccctacacaatctc 861
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 289783074 atcgaaaatatttatcatgaacacttgcaggttctacatcaagtgcccctactcaatctc 289783133
Query: 862 tctttagacttgtccctgaaccctttaaactttattgaaccaggtgccttttacaaaatt 921
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 289783134 tctttagacttgtccctgaaccctttaaactttattgaaccaggtgcctttaacaaaatt 289783193
Query: 922 aggctcaatggattgactttgcgaagtaattttaatagttcggatgtaatgaaaacttgt 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289783194 aggctcaatggattgactttgcgaagtaattttaatagttcggatgtaatgaaaacttgt 289783253
Query: 982 attcaaggtctggctggttcaaaaatcaatcagttgggttttggagaattaaaaaatgaa 1041
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct: 289783254 attcaaggtctggctggttcaaaaatcaatcagttggttttgggagaatttaaaaatgaa 289783313
Query: 1042 a-gaacttggaaag-tttgacaaatctgtcc 1070
| |||||||||||| ||||||||||||||||
Sbjct: 289783314 aggaacttggaaagttttgacaaatctgtcc 289783344
Score = 648 bits (327), Expect = 0.0
Identities = 337/339 (99%), Gaps = 1/339 (0%)
Strand = Plus / Plus
Query: 1 tcttcttcta-cttcccctctggtgacagaggagataaatattagagaaacaaaagtcca 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289775820 tcttcttctaacttcccctctggtgacagaggagataaatattagagaaacaaaagtcca 289775879
Query: 60 gaatgcgaaggctgccattctcacttcctcttaccccttaacccagtgctgctttgaata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289775880 gaatgcgaaggctgccattctcacttcctcttaccccttaacccagtgctgctttgaata 289775939
Query: 120 gagtcagtgcccccgggcagtgtgctgaggagagaagacggcagtgcctcggaggctgct 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 289775940 gagtcagtgcccccgggcagtgtgctgaggagagaagacggcagtgcctgggaggctgct 289775999
Query: 180 ctgaccagcagatacagagggtcatgctttctccgggtcacttctgttcacggaaaatgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289776000 ctgaccagcagatacagagggtcatgctttctccgggtcacttctgttcacggaaaatgc 289776059
Query: 240 caggatgattcctcgcatccgcctggctgtggccacgatcccagccatggcctttctctc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289776060 caggatgattcctcgcatccgcctggctgtggccacgatcccagccatggcctttctctc 289776119
Query: 300 ctgcctgagatctgagagctgggacccttgcgtgcaggt 338
|||||||||||||||||||||||||||||||||||||||
Sbjct: 289776120 ctgcctgagatctgagagctgggacccttgcgtgcaggt 289776158
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 334 caggtggttcctaacattagttaccaatgcatggagctgaatttctacaaaatccctgac 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289780024 caggtggttcctaacattagttaccaatgcatggagctgaatttctacaaaatccctgac 289780083
Query: 394 aacatccccacatcagtcaagatactggacctgagctttaactacctgagtcatttagac 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289780084 aacatccccacatcagtcaagatactggacctgagctttaactacctgagtcatttagac 289780143
Query: 454 agcaatagcttctccagctttccagaactgcaggtgctggatttatccag 503
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289780144 agcaatagcttctccagctttccagaactgcaggtgctggatttatccag 289780193
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,798,559
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 6
Length of query: 1070
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1049
Effective length of database: 2,808,413,156
Effective search space: 2946025400644
Effective search space used: 2946025400644
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)