Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008168
(1858 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001788933.1| PREDICTED: synaptonemal complex protein SC65... 296 5e-80
Alignment gi|XP_002696070.1| PREDICTED: synaptonemal complex protein SC65... 266 4e-71
Alignment gi|NP_001192974.1| cartilage-associated protein [Bos taurus]. 224 2e-58
Alignment gi|XP_002696958.1| PREDICTED: cartilage associated protein [Bos... 224 2e-58
Alignment gi|NP_001096761.1| prolyl 3-hydroxylase 1 [Bos taurus]. 107 3e-23
Alignment gi|NP_001093815.1| prolyl 3-hydroxylase 2 [Bos taurus]. 94 5e-19
>ref|XP_001788933.1| PREDICTED: synaptonemal complex protein SC65, partial [Bos taurus].
Length = 322
Score = 296 bits (757), Expect = 5e-80
Identities = 143/149 (95%), Positives = 147/149 (98%)
Frame = +1
Query: 790 LRRCKRSLPAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKH 969
LRRCKRSLPAF VPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKH
Sbjct: 1 LRRCKRSLPAFHVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKH 60
Query: 970 ELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYL 1149
ELTAKYL+YYRGLLDAA+EPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYL
Sbjct: 61 ELTAKYLSYYRGLLDAADEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYL 120
Query: 1150 AVFARCLAGCEGAHEQVDFKDFYPSIAGI 1236
AVFARCLAGCEGAHEQVDFKDFYP+IA +
Sbjct: 121 AVFARCLAGCEGAHEQVDFKDFYPAIADL 149
>ref|XP_002696070.1| PREDICTED: synaptonemal complex protein SC65-like, partial [Bos
taurus].
Length = 307
Score = 266 bits (681), Expect = 4e-71
Identities = 129/134 (96%), Positives = 133/134 (99%)
Frame = +1
Query: 835 PPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLD 1014
PPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYL+YYRGLLD
Sbjct: 1 PPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLSYYRGLLD 60
Query: 1015 AAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHE 1194
AA+EPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHE
Sbjct: 61 AADEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHE 120
Query: 1195 QVDFKDFYPSIAGI 1236
QVDFKDFYP+IA +
Sbjct: 121 QVDFKDFYPAIADL 134
>ref|NP_001192974.1| cartilage-associated protein [Bos taurus].
Length = 401
Score = 224 bits (571), Expect = 2e-58
Identities = 122/257 (47%), Positives = 157/257 (61%), Gaps = 2/257 (0%)
Frame = +1
Query: 466 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEA 645
S AQYE+YSFR FP ++LMPL +AY HAL+QY E W ES DSEA
Sbjct: 23 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSSEHWAESVGYLEISLRLHRLLRDSEA 82
Query: 646 FCHANCXXXXXXXXXXXXXXXXXPDGGHEDEWAR--ELQLFGHVLERAACLRRCKRSLPA 819
FCH NC P G AR EL+LFG +L RA CL+RCK+ LPA
Sbjct: 83 FCHRNCSAAPQPE----------PTAG----LARYPELRLFGGLLRRAHCLKRCKQGLPA 128
Query: 820 FQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYY 999
F+ P R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P E+ + + YY
Sbjct: 129 FRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYY 188
Query: 1000 RGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGC 1179
+ L D AE+ + DLE + YE++F+RAV+ YN ++R DME AL ++ F CLA C
Sbjct: 189 KSLPD-AEDYIKDLETKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAAC 247
Query: 1180 EGAHEQVDFKDFYPSIA 1230
EG+ E DFKDFY SIA
Sbjct: 248 EGSREIRDFKDFYLSIA 264
>ref|XP_002696958.1| PREDICTED: cartilage associated protein [Bos taurus].
Length = 401
Score = 224 bits (571), Expect = 2e-58
Identities = 122/257 (47%), Positives = 157/257 (61%), Gaps = 2/257 (0%)
Frame = +1
Query: 466 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEA 645
S AQYE+YSFR FP ++LMPL +AY HAL+QY E W ES DSEA
Sbjct: 23 SGRAQYERYSFRSFPRDELMPLESAYRHALDQYSSEHWAESVGYLEISLRLHRLLRDSEA 82
Query: 646 FCHANCXXXXXXXXXXXXXXXXXPDGGHEDEWAR--ELQLFGHVLERAACLRRCKRSLPA 819
FCH NC P G AR EL+LFG +L RA CL+RCK+ LPA
Sbjct: 83 FCHRNCSAAPQPE----------PTAG----LARYPELRLFGGLLRRAHCLKRCKQGLPA 128
Query: 820 FQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYY 999
F+ P R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P E+ + + YY
Sbjct: 129 FRQSQPSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYY 188
Query: 1000 RGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGC 1179
+ L D AE+ + DLE + YE++F+RAV+ YN ++R DME AL ++ F CLA C
Sbjct: 189 KSLPD-AEDYIKDLETKSYESLFIRAVRAYNGENWRTCITDMELALPDFFKAFYECLAAC 247
Query: 1180 EGAHEQVDFKDFYPSIA 1230
EG+ E DFKDFY SIA
Sbjct: 248 EGSREIRDFKDFYLSIA 264
>ref|NP_001096761.1| prolyl 3-hydroxylase 1 [Bos taurus].
Length = 736
Score = 107 bits (268), Expect = 3e-23
Identities = 60/149 (40%), Positives = 83/149 (55%)
Frame = +1
Query: 748 ELQLFGHVLERAACLRRCKRSLPAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKA 927
+L+ FG +L RAACLRRC A + +L +F+ R PY YL A FK N+LEKA
Sbjct: 106 DLRFFGGLLRRAACLRRCLGPSTAHSLS---EELELEFRKRSPYNYLQVAYFKINKLEKA 162
Query: 928 VAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFR 1107
VAAA+TF NP+H + L+YY+ + E DLEA+P+ F V+LY+ +
Sbjct: 163 VAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFKDLEAKPHMHEFRLGVRLYSEEQPQ 222
Query: 1108 GSTEDMERALAEYLAVFARCLAGCEGAHE 1194
+ +E AL EY C A CEG ++
Sbjct: 223 EAVPHLEAALREYFVAAEECRALCEGPYD 251
>ref|NP_001093815.1| prolyl 3-hydroxylase 2 [Bos taurus].
Length = 706
Score = 93.6 bits (231), Expect = 5e-19
Identities = 57/149 (38%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Frame = +1
Query: 748 ELQLFGHVLERAACLRRCKRSL---PAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRL 918
EL F +LERA C R C+ PA + + DFQ R+PY YL A K N++
Sbjct: 104 ELPFFRALLERARCYRSCQSQRLGGPASR-HRASEDVRSDFQRRVPYNYLQRAYIKLNQM 162
Query: 919 EKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSG 1098
EKAVAAA+TF NP+H + + YR + + L D EA+P+ + VK Y +
Sbjct: 163 EKAVAAAHTFFMANPEHMEMQQNIENYRTMAGVEDLQLVDREAKPHLESYSAGVKHYEAD 222
Query: 1099 DFRGSTEDMERALAEYLAVFARCLAGCEG 1185
DF + + E+AL EY C A CEG
Sbjct: 223 DFELAIKYFEQALREYFNEDMECRALCEG 251
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,917,106
Number of extensions: 1944395
Number of successful extensions: 10027
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9902
Number of HSP's successfully gapped: 6
Length of query: 619
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 511
Effective length of database: 14,107,870
Effective search space: 7209121570
Effective search space used: 7209121570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008168
(1858 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849608.1| PREDICTED: similar to Nucleolar autoantigen No5... 424 e-118
Alignment gi|XP_542696.2| PREDICTED: similar to Cartilage-associated prot... 228 2e-59
Alignment gi|XP_848570.1| PREDICTED: similar to leprecan 1 [Canis familia... 108 1e-23
Alignment gi|XP_535843.2| PREDICTED: similar to leprecan-like 1 isoform 1... 94 3e-19
Alignment gi|XP_543846.2| PREDICTED: similar to leprecan-like 2 isoform 1... 62 2e-09
Alignment gi|XP_853513.1| PREDICTED: similar to leprecan-like 2 isoform 2... 55 2e-07
>ref|XP_849608.1| PREDICTED: similar to Nucleolar autoantigen No55 [Canis familiaris].
Length = 443
Score = 424 bits (1089), Expect = e-118
Identities = 211/257 (82%), Positives = 217/257 (84%)
Frame = +1
Query: 466 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEA 645
SA AQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRES DSEA
Sbjct: 15 SAAAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEA 74
Query: 646 FCHANCXXXXXXXXXXXXXXXXXPDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQ 825
FCHANC PDGG +EWARELQLFGHVLERAACLRRCKR+LPAFQ
Sbjct: 75 FCHANCSGPAPPAASPSGPAPG-PDGGRGEEWARELQLFGHVLERAACLRRCKRTLPAFQ 133
Query: 826 VPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRG 1005
VPYPPRQLLRDFQSRLPYQYLHYA FKANRLEKA AAAYTFLQRNPKHELTAKYL+ RG
Sbjct: 134 VPYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAAAAAYTFLQRNPKHELTAKYLSNCRG 193
Query: 1006 LLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEG 1185
LLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLA+FARCLAGCEG
Sbjct: 194 LLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAIFARCLAGCEG 253
Query: 1186 AHEQVDFKDFYPSIAGI 1236
AHEQVDFKDFYP+IA +
Sbjct: 254 AHEQVDFKDFYPAIADL 270
>ref|XP_542696.2| PREDICTED: similar to Cartilage-associated protein precursor [Canis
familiaris].
Length = 412
Score = 228 bits (581), Expect = 2e-59
Identities = 119/252 (47%), Positives = 156/252 (61%)
Frame = +1
Query: 475 AQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEAFCH 654
AQYE+YSFR FP ++LMPL +AY HAL+QY GE W ES DSEAFCH
Sbjct: 26 AQYERYSFRSFPRDELMPLESAYRHALDQYGGERWAESVGYLEISLRLHRLLRDSEAFCH 85
Query: 655 ANCXXXXXXXXXXXXXXXXXPDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQVPY 834
NC P+ + EL+LF +L RA CL+RCK+ LPAF+
Sbjct: 86 RNCSAVPPAEPQPEPQPEPEPEPAGLARYP-ELRLFRGLLRRAHCLKRCKQGLPAFRQSQ 144
Query: 835 PPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLD 1014
P R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P E+ + + YY+ L D
Sbjct: 145 PSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPD 204
Query: 1015 AAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHE 1194
AE+ + DLE + YE++F+RAV+ YN ++R S DME AL ++ F CLA CEG+ E
Sbjct: 205 -AEDYIKDLETKSYESLFIRAVRAYNGENWRTSVTDMELALPDFFKAFYECLAACEGSRE 263
Query: 1195 QVDFKDFYPSIA 1230
DFKDFY SIA
Sbjct: 264 IKDFKDFYLSIA 275
>ref|XP_848570.1| PREDICTED: similar to leprecan 1 [Canis familiaris].
Length = 848
Score = 108 bits (271), Expect = 1e-23
Identities = 61/150 (40%), Positives = 84/150 (56%)
Frame = +1
Query: 745 RELQLFGHVLERAACLRRCKRSLPAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEK 924
R+L+ FG +L RAACLRRC A + +L +F+ R PY YL A FK N+LEK
Sbjct: 109 RDLRFFGALLHRAACLRRCLGPPAAHALS---EELELEFRKRSPYNYLQVAYFKINKLEK 165
Query: 925 AVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDF 1104
AVAAA+TF NP+H + L+YY+ + E DLEA+P+ F V+LY+
Sbjct: 166 AVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLEAKPHMHEFRLGVRLYSEEQP 225
Query: 1105 RGSTEDMERALAEYLAVFARCLAGCEGAHE 1194
+ +E AL EY+ C A CEG ++
Sbjct: 226 HEAVAHLEAALREYVVADTECRALCEGPYD 255
>ref|XP_535843.2| PREDICTED: similar to leprecan-like 1 isoform 1 [Canis familiaris].
Length = 709
Score = 94.4 bits (233), Expect = 3e-19
Identities = 59/151 (39%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Frame = +1
Query: 742 ARELQLFGHVLERAACLRRCKRSL---PAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKAN 912
A EL F +LERA C RRC+ PA + + DFQ R+PY YL A K N
Sbjct: 105 AAELPFFRALLERARCARRCQAERLGGPASRHRVSD-DVRSDFQRRVPYNYLQRAYIKLN 163
Query: 913 RLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYN 1092
+LEKAV AA+TF NP+H + + YR + L D EA+P+ + VK Y
Sbjct: 164 QLEKAVEAAHTFFMANPEHMEMQQNIENYRTMAGVEVLQLVDREAKPHLESYSAGVKYYE 223
Query: 1093 SGDFRGSTEDMERALAEYLAVFARCLAGCEG 1185
+ DF + + E+AL EY C A CEG
Sbjct: 224 ADDFELAIKYFEQALREYFNEDMECRALCEG 254
>ref|XP_543846.2| PREDICTED: similar to leprecan-like 2 isoform 1 [Canis familiaris].
Length = 960
Score = 62.0 bits (149), Expect = 2e-09
Identities = 37/108 (34%), Positives = 53/108 (49%)
Frame = +1
Query: 874 PYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQP 1053
P + +HY Q K +L+ A AAA+TF NP H + + YR + + DLE P
Sbjct: 381 PLERVHYLQLK--KLDLAAAAAHTFFVANPTHLQMREDMAKYRRMSRVRPQSFRDLETPP 438
Query: 1054 YEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHEQ 1197
+ A + ++L + + +E AL E LA C AGCEG EQ
Sbjct: 439 HWAAYDEGLELLGRQEAGLALPRLEEALQEILAQMESCRAGCEGPEEQ 486
>ref|XP_853513.1| PREDICTED: similar to leprecan-like 2 isoform 2 [Canis familiaris].
Length = 744
Score = 55.1 bits (131), Expect = 2e-07
Identities = 32/95 (33%), Positives = 46/95 (48%)
Frame = +1
Query: 913 RLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYN 1092
+L+ A AAA+TF NP H + + YR + + DLE P+ A + ++L
Sbjct: 176 KLDLAAAAAHTFFVANPTHLQMREDMAKYRRMSRVRPQSFRDLETPPHWAAYDEGLELLG 235
Query: 1093 SGDFRGSTEDMERALAEYLAVFARCLAGCEGAHEQ 1197
+ + +E AL E LA C AGCEG EQ
Sbjct: 236 RQEAGLALPRLEEALQEILAQMESCRAGCEGPEEQ 270
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,480,153
Number of extensions: 1971613
Number of successful extensions: 10640
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 10448
Number of HSP's successfully gapped: 6
Length of query: 619
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 510
Effective length of database: 15,240,880
Effective search space: 7772848800
Effective search space used: 7772848800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008168
(1858 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131464.1| PREDICTED: synaptonemal complex protein SC65... 453 e-127
Alignment gi|XP_003360995.1| PREDICTED: cartilage-associated protein-like... 107 2e-23
>ref|XP_003131464.1| PREDICTED: synaptonemal complex protein SC65 [Sus scrofa].
Length = 444
Score = 453 bits (1166), Expect = e-127
Identities = 223/257 (86%), Positives = 224/257 (87%)
Frame = +1
Query: 466 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEA 645
SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRES DSEA
Sbjct: 15 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEA 74
Query: 646 FCHANCXXXXXXXXXXXXXXXXXPDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQ 825
FCHANC PDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQ
Sbjct: 75 FCHANCSGPAPPSAATPGPAPPDPDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQ 134
Query: 826 VPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRG 1005
VPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRG
Sbjct: 135 VPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRG 194
Query: 1006 LLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEG 1185
LLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEG
Sbjct: 195 LLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEG 254
Query: 1186 AHEQVDFKDFYPSIAGI 1236
AHEQVDFKDFYPSIA +
Sbjct: 255 AHEQVDFKDFYPSIADL 271
>ref|XP_003360995.1| PREDICTED: cartilage-associated protein-like, partial [Sus scrofa].
Length = 108
Score = 107 bits (268), Expect = 2e-23
Identities = 54/109 (49%), Positives = 75/109 (68%)
Frame = +1
Query: 907 ANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKL 1086
AN L KA+AAA+TFL ++P E+ + + YY+ L DA E+ + DLE++ YE++F+RAV+
Sbjct: 1 ANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPDA-EDYIKDLESKSYESLFIRAVRA 59
Query: 1087 YNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHEQVDFKDFYPSIAG 1233
YN ++R DME AL ++ F CLA CEG+ E DFKDFY SIAG
Sbjct: 60 YNGENWRTCITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIAG 108
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,466,110
Number of extensions: 1316291
Number of successful extensions: 6359
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6303
Number of HSP's successfully gapped: 2
Length of query: 619
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 514
Effective length of database: 8,729,747
Effective search space: 4487089958
Effective search space used: 4487089958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008168
(1858 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_789800.1| synaptonemal complex protein SC65 [Mus musculus]. 416 e-116
Alignment gi|NP_064306.2| cartilage-associated protein precursor [Mus mus... 227 2e-59
Alignment gi|NP_062757.2| prolyl 3-hydroxylase 1 isoform 2 [Mus musculus]. 106 7e-23
Alignment gi|NP_062756.2| prolyl 3-hydroxylase 1 isoform 1 [Mus musculus]. 106 7e-23
Alignment gi|NP_775555.1| prolyl 3-hydroxylase 2 precursor [Mus musculus]. 92 2e-18
Alignment gi|NP_038562.2| prolyl 3-hydroxylase 3 precursor [Mus musculus]. 65 2e-10
>ref|NP_789800.1| synaptonemal complex protein SC65 [Mus musculus].
Length = 443
Score = 416 bits (1068), Expect = e-116
Identities = 205/260 (78%), Positives = 216/260 (83%), Gaps = 3/260 (1%)
Frame = +1
Query: 466 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEA 645
SAGAQYEKYSFRGFPPEDLMPLA AYGHALEQYEGESWRES DSEA
Sbjct: 15 SAGAQYEKYSFRGFPPEDLMPLATAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEA 74
Query: 646 FCHANCXXXXXXXXXXXXXXXXXPDGGHE---DEWARELQLFGHVLERAACLRRCKRSLP 816
FCHANC PDG H+ ++WAREL+LFGHVLERAACLRRCK++LP
Sbjct: 75 FCHANCSGPATSQPRPASG----PDGDHDGDGEDWARELRLFGHVLERAACLRRCKKTLP 130
Query: 817 AFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNY 996
AFQVPYPPRQLLRDFQSRLPYQYLHYA FKANRLEKAVAAAYTFLQRNPKHELTAKYLNY
Sbjct: 131 AFQVPYPPRQLLRDFQSRLPYQYLHYAHFKANRLEKAVAAAYTFLQRNPKHELTAKYLNY 190
Query: 997 YRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAG 1176
YRG+LD +E LTDLEAQPYEAVFLRAVKLYNSGDFR STEDMERALAEY+ VFARCLAG
Sbjct: 191 YRGMLDIGDESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALAEYMTVFARCLAG 250
Query: 1177 CEGAHEQVDFKDFYPSIAGI 1236
CEGAHEQVDFKDFYP+IA +
Sbjct: 251 CEGAHEQVDFKDFYPAIADL 270
>ref|NP_064306.2| cartilage-associated protein precursor [Mus musculus].
Length = 400
Score = 227 bits (579), Expect = 2e-59
Identities = 120/251 (47%), Positives = 154/251 (61%)
Frame = +1
Query: 478 QYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEAFCHA 657
QYE+YSFR FP ++LMPL +AY HAL+QY GE W ES DSEAFCH
Sbjct: 26 QYERYSFRSFPRDELMPLESAYRHALDQYSGEHWAESVGYLEVSLRLHRLLRDSEAFCHR 85
Query: 658 NCXXXXXXXXXXXXXXXXXPDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQVPYP 837
NC P G EL+LFG VL RA CL+RCK+ LPAF+ P
Sbjct: 86 NCSAATPAPA---------PAGPASHA---ELRLFGSVLRRAQCLKRCKQGLPAFRQSQP 133
Query: 838 PRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDA 1017
R +L DFQ R PY++L +A FKAN L KA+AAA+T+L ++P E+ + + YY+ L
Sbjct: 134 SRSVLADFQQREPYKFLQFAYFKANDLPKAIAAAHTYLLKHPDDEMMKRNMEYYKS-LPG 192
Query: 1018 AEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHEQ 1197
AE+ + DLE + YE++F+RAV+ YN ++R S DME AL ++L F CLA CEG+ E
Sbjct: 193 AEDHIKDLETKSYESLFVRAVRAYNGENWRTSISDMELALPDFLKAFYECLAACEGSREI 252
Query: 1198 VDFKDFYPSIA 1230
DFKDFY SIA
Sbjct: 253 KDFKDFYLSIA 263
>ref|NP_062757.2| prolyl 3-hydroxylase 1 isoform 2 [Mus musculus].
Length = 739
Score = 106 bits (264), Expect = 7e-23
Identities = 61/149 (40%), Positives = 82/149 (55%)
Frame = +1
Query: 748 ELQLFGHVLERAACLRRCKRSLPAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKA 927
+L+ FG VL RAACLRRC A + +L +F R PY YL A FK N+LEKA
Sbjct: 109 DLRFFGAVLRRAACLRRCLGPPSAHLLS---EELDLEFNKRSPYNYLQVAYFKINKLEKA 165
Query: 928 VAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFR 1107
VAAA+TF NP+H + L+YY+ + E DLEA+P+ F V+LY+ +
Sbjct: 166 VAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFRDLEAKPHMHEFRLGVRLYSEEKPQ 225
Query: 1108 GSTEDMERALAEYLAVFARCLAGCEGAHE 1194
+ +E AL EY C A CEG ++
Sbjct: 226 EAVPHLEAALQEYFVADEECRALCEGPYD 254
>ref|NP_062756.2| prolyl 3-hydroxylase 1 isoform 1 [Mus musculus].
Length = 748
Score = 106 bits (264), Expect = 7e-23
Identities = 61/149 (40%), Positives = 82/149 (55%)
Frame = +1
Query: 748 ELQLFGHVLERAACLRRCKRSLPAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKA 927
+L+ FG VL RAACLRRC A + +L +F R PY YL A FK N+LEKA
Sbjct: 109 DLRFFGAVLRRAACLRRCLGPPSAHLLS---EELDLEFNKRSPYNYLQVAYFKINKLEKA 165
Query: 928 VAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFR 1107
VAAA+TF NP+H + L+YY+ + E DLEA+P+ F V+LY+ +
Sbjct: 166 VAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFRDLEAKPHMHEFRLGVRLYSEEKPQ 225
Query: 1108 GSTEDMERALAEYLAVFARCLAGCEGAHE 1194
+ +E AL EY C A CEG ++
Sbjct: 226 EAVPHLEAALQEYFVADEECRALCEGPYD 254
>ref|NP_775555.1| prolyl 3-hydroxylase 2 precursor [Mus musculus].
Length = 703
Score = 91.7 bits (226), Expect = 2e-18
Identities = 59/149 (39%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Frame = +1
Query: 748 ELQLFGHVLERAACLRRCKRSL---PAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRL 918
EL F VLERA C R C+ PA + + DFQ R+PY YL A K N+L
Sbjct: 102 ELPFFRAVLERARCSRSCQSQRLGGPASRHRVS-EDVRSDFQRRVPYNYLQRAYIKLNQL 160
Query: 919 EKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSG 1098
EKA+ AA+TF NP+H + L Y+ E PL D EA+P+ + VK Y +
Sbjct: 161 EKAMEAAHTFFMANPEHMEMQQDLEDYKATA-RVEAPLLDREAKPHLESYNAGVKHYEAD 219
Query: 1099 DFRGSTEDMERALAEYLAVFARCLAGCEG 1185
DF + + E+AL EY C A CEG
Sbjct: 220 DFESAIKYFEQALREYFNEDMECRALCEG 248
>ref|NP_038562.2| prolyl 3-hydroxylase 3 precursor [Mus musculus].
Length = 732
Score = 65.1 bits (157), Expect = 2e-10
Identities = 62/236 (26%), Positives = 87/236 (36%), Gaps = 5/236 (2%)
Frame = +1
Query: 502 GFPPE--DLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEAFCHANCXXXX 675
G PP+ DL+ Y L Y +W + + C A+C
Sbjct: 33 GSPPQAPDLL-----YADGLRAYSAGAWAPAVALLREALRSRAALGRARQECGASCAAEP 87
Query: 676 XXXXXXXXXXXXXPDGGHEDEWARELQLFGHVLERAACLRRC--KRSLPAFQVPYPPRQL 849
P G W E L L RA CL +C +R P
Sbjct: 88 GAALPSQLLGAPHPVSG-PGVW--EPLLLRATLRRAECLTQCAVRRLGPGGAARLRVGSA 144
Query: 850 LRD-FQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEE 1026
LRD F+ R PY YL A ++ +L+ A +AA+TF NP H + + YR + +
Sbjct: 145 LRDAFRRREPYNYLQRAYYQLKKLDLAASAAHTFFVANPTHLQMREDMAKYRRMSAIRPQ 204
Query: 1027 PLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHE 1194
DL Y A + ++L + + +E AL LA C A CEG E
Sbjct: 205 SFRDLVTPLYWAAYDTGLELLEQREAALALPQLEEALQGSLAHMESCRAACEGPEE 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,877,468
Number of extensions: 1575867
Number of successful extensions: 7594
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7492
Number of HSP's successfully gapped: 6
Length of query: 619
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 512
Effective length of database: 12,403,707
Effective search space: 6350697984
Effective search space used: 6350697984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008168
(1858 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006446.1| synaptonemal complex protein SC65 [Homo sapiens]. 419 e-117
Alignment gi|NP_006362.1| cartilage-associated protein precursor [Homo sa... 225 1e-58
Alignment gi|NP_001230175.1| prolyl 3-hydroxylase 1 isoform 3 precursor [... 110 4e-24
Alignment gi|NP_071751.3| prolyl 3-hydroxylase 1 isoform 1 precursor [Hom... 110 4e-24
Alignment gi|NP_001139761.1| prolyl 3-hydroxylase 1 isoform 2 precursor [... 110 4e-24
Alignment gi|NP_060662.2| prolyl 3-hydroxylase 2 isoform a [Homo sapiens]. 89 1e-17
Alignment gi|XP_003403813.1| PREDICTED: cartilage-associated protein-like... 80 5e-15
Alignment gi|NP_055077.2| prolyl 3-hydroxylase 3 precursor [Homo sapiens]. 77 4e-14
>ref|NP_006446.1| synaptonemal complex protein SC65 [Homo sapiens].
Length = 437
Score = 419 bits (1078), Expect = e-117
Identities = 208/257 (80%), Positives = 216/257 (84%)
Frame = +1
Query: 466 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEA 645
SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRES DSEA
Sbjct: 15 SAGAQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESARYLEAALRLHRLLRDSEA 74
Query: 646 FCHANCXXXXXXXXXXXXXXXXXPDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQ 825
FCHANC PDGG DEWA EL+LFG VLERAACLRRCKR+LPAFQ
Sbjct: 75 FCHANCSGPAPAAKPD-------PDGGRADEWACELRLFGRVLERAACLRRCKRTLPAFQ 127
Query: 826 VPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRG 1005
VPYPPRQLLRDFQSRLPYQYLHYA FKANRLEKAVAAAYTFLQRNPKHELTAKYLNYY+G
Sbjct: 128 VPYPPRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQG 187
Query: 1006 LLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEG 1185
+LD A+E LTDLEAQPYEAVFLRAVKLYNSGDFR STEDMERAL+EYLAVFARCLAGCEG
Sbjct: 188 MLDVADESLTDLEAQPYEAVFLRAVKLYNSGDFRSSTEDMERALSEYLAVFARCLAGCEG 247
Query: 1186 AHEQVDFKDFYPSIAGI 1236
AHEQVDFKDFYP+IA +
Sbjct: 248 AHEQVDFKDFYPAIADL 264
>ref|NP_006362.1| cartilage-associated protein precursor [Homo sapiens].
Length = 401
Score = 225 bits (573), Expect = 1e-58
Identities = 118/252 (46%), Positives = 155/252 (61%)
Frame = +1
Query: 475 AQYEKYSFRGFPPEDLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEAFCH 654
AQYE+YSFR FP ++LMPL +AY HAL++Y GE W ES DSEAFCH
Sbjct: 26 AQYERYSFRSFPRDELMPLESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDSEAFCH 85
Query: 655 ANCXXXXXXXXXXXXXXXXXPDGGHEDEWARELQLFGHVLERAACLRRCKRSLPAFQVPY 834
NC P+ EL+LFG +L RA CL+RCK+ LPAF+
Sbjct: 86 RNCSAAPQ------------PEPAAGLASYPELRLFGGLLRRAHCLKRCKQGLPAFRQSQ 133
Query: 835 PPRQLLRDFQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLD 1014
P R++L DFQ R PY++L +A FKAN L KA+AAA+TFL ++P E+ + + YY+ L
Sbjct: 134 PSREVLADFQRREPYKFLQFAYFKANNLPKAIAAAHTFLLKHPDDEMMKRNMAYYKS-LP 192
Query: 1015 AAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHE 1194
AE+ + DLE + YE++F+RAV+ YN ++R S DME AL ++ F CLA CEG+ E
Sbjct: 193 GAEDYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLAACEGSRE 252
Query: 1195 QVDFKDFYPSIA 1230
DFKDFY SIA
Sbjct: 253 IKDFKDFYLSIA 264
>ref|NP_001230175.1| prolyl 3-hydroxylase 1 isoform 3 precursor [Homo sapiens].
Length = 804
Score = 110 bits (275), Expect = 4e-24
Identities = 60/150 (40%), Positives = 83/150 (55%)
Frame = +1
Query: 745 RELQLFGHVLERAACLRRCKRSLPAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEK 924
R+L FG +L RAACLRRC A + ++ +F+ R PY YL A FK N+LEK
Sbjct: 105 RDLSFFGGLLRRAACLRRCLGPPAAHSLS---EEMELEFRKRSPYNYLQVAYFKINKLEK 161
Query: 925 AVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDF 1104
AVAAA+TF NP+H + L+YY+ + E DLE QP+ F V+LY+
Sbjct: 162 AVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQP 221
Query: 1105 RGSTEDMERALAEYLAVFARCLAGCEGAHE 1194
+ + +E AL EY + C A CEG ++
Sbjct: 222 QEAVPHLEAALQEYFVAYEECRALCEGPYD 251
>ref|NP_071751.3| prolyl 3-hydroxylase 1 isoform 1 precursor [Homo sapiens].
Length = 736
Score = 110 bits (275), Expect = 4e-24
Identities = 60/150 (40%), Positives = 83/150 (55%)
Frame = +1
Query: 745 RELQLFGHVLERAACLRRCKRSLPAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEK 924
R+L FG +L RAACLRRC A + ++ +F+ R PY YL A FK N+LEK
Sbjct: 105 RDLSFFGGLLRRAACLRRCLGPPAAHSLS---EEMELEFRKRSPYNYLQVAYFKINKLEK 161
Query: 925 AVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDF 1104
AVAAA+TF NP+H + L+YY+ + E DLE QP+ F V+LY+
Sbjct: 162 AVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQP 221
Query: 1105 RGSTEDMERALAEYLAVFARCLAGCEGAHE 1194
+ + +E AL EY + C A CEG ++
Sbjct: 222 QEAVPHLEAALQEYFVAYEECRALCEGPYD 251
>ref|NP_001139761.1| prolyl 3-hydroxylase 1 isoform 2 precursor [Homo sapiens].
Length = 697
Score = 110 bits (275), Expect = 4e-24
Identities = 60/150 (40%), Positives = 83/150 (55%)
Frame = +1
Query: 745 RELQLFGHVLERAACLRRCKRSLPAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRLEK 924
R+L FG +L RAACLRRC A + ++ +F+ R PY YL A FK N+LEK
Sbjct: 105 RDLSFFGGLLRRAACLRRCLGPPAAHSLS---EEMELEFRKRSPYNYLQVAYFKINKLEK 161
Query: 925 AVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDF 1104
AVAAA+TF NP+H + L+YY+ + E DLE QP+ F V+LY+
Sbjct: 162 AVAAAHTFFVGNPEHMEMQQNLDYYQTMSGVKEADFKDLETQPHMQEFRLGVRLYSEEQP 221
Query: 1105 RGSTEDMERALAEYLAVFARCLAGCEGAHE 1194
+ + +E AL EY + C A CEG ++
Sbjct: 222 QEAVPHLEAALQEYFVAYEECRALCEGPYD 251
>ref|NP_060662.2| prolyl 3-hydroxylase 2 isoform a [Homo sapiens].
Length = 708
Score = 89.4 bits (220), Expect = 1e-17
Identities = 56/149 (37%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Frame = +1
Query: 748 ELQLFGHVLERAACLRRCKRSL---PAFQVPYPPRQLLRDFQSRLPYQYLHYAQFKANRL 918
EL LF +L RA C R C+ PA + + DFQ R+PY YL A K N+L
Sbjct: 106 ELPLFRSLLGRARCYRSCETQRLGGPASRHRVS-EDVRSDFQRRVPYNYLQRAYIKLNQL 164
Query: 919 EKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSG 1098
EKAV AA+TF NP+H + + YR L D EA+P+ + VK Y +
Sbjct: 165 EKAVEAAHTFFVANPEHMEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEAD 224
Query: 1099 DFRGSTEDMERALAEYLAVFARCLAGCEG 1185
DF + E+AL EY C CEG
Sbjct: 225 DFEMAIRHFEQALREYFVEDTECRTLCEG 253
>ref|XP_003403813.1| PREDICTED: cartilage-associated protein-like [Homo sapiens].
Length = 222
Score = 80.5 bits (197), Expect = 5e-15
Identities = 40/79 (50%), Positives = 53/79 (67%)
Frame = +1
Query: 994 YYRGLLDAAEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLA 1173
YY+ L AE+ + DLE + YE++F+RAV+ YN ++R S DME AL ++ F CLA
Sbjct: 8 YYKSL-PGAEDYIKDLETKSYESLFIRAVRAYNGENWRTSITDMELALPDFFKAFYECLA 66
Query: 1174 GCEGAHEQVDFKDFYPSIA 1230
CEG+ E DFKDFY SIA
Sbjct: 67 ACEGSREIKDFKDFYLSIA 85
>ref|NP_055077.2| prolyl 3-hydroxylase 3 precursor [Homo sapiens].
Length = 736
Score = 77.4 bits (189), Expect = 4e-14
Identities = 67/240 (27%), Positives = 92/240 (38%), Gaps = 8/240 (3%)
Frame = +1
Query: 502 GFPPE--DLMPLAAAYGHALEQYEGESWRESXXXXXXXXXXXXXXXDSEAFCHANCXXXX 675
G PP+ DL+ Y L Y +W + C A+C
Sbjct: 31 GAPPQAPDLL-----YADGLRAYAAGAWAPAVALLREALRSQAALGRVRLDCGASCAADP 85
Query: 676 XXXXXXXXXXXXXPDGGH---EDEWARELQLFGHVLERAACLRRC--KRSLPAFQVPYPP 840
PD G + W R QL L RA CL +C +R P
Sbjct: 86 GAALPAVLLGAPEPDSGPGPTQGSWER--QLLRAALRRADCLTQCAARRLGPGGAARLRV 143
Query: 841 RQLLRD-FQSRLPYQYLHYAQFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYRGLLDA 1017
LRD F+ R PY YL A ++ +L+ A AAA+TF NP H + + YR +
Sbjct: 144 GSALRDAFRRREPYNYLQRAYYQLKKLDLAAAAAHTFFVANPMHLQMREDMAKYRRMSGV 203
Query: 1018 AEEPLTDLEAQPYEAVFLRAVKLYNSGDFRGSTEDMERALAEYLAVFARCLAGCEGAHEQ 1197
+ DLE P+ A + ++L + + +E AL LA C A CEG EQ
Sbjct: 204 RPQSFRDLETPPHWAAYDTGLELLGRQEAGLALPRLEEALQGSLAQMESCRADCEGPEEQ 263
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,997,207
Number of extensions: 1916950
Number of successful extensions: 9677
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9586
Number of HSP's successfully gapped: 8
Length of query: 619
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 510
Effective length of database: 14,704,088
Effective search space: 7499084880
Effective search space used: 7499084880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008168
(1858 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1574 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1574 bits (794), Expect = 0.0
Identities = 799/801 (99%)
Strand = Plus / Minus
Query: 1058 aggccgtgttcctccgggctgtgaagctctacaacagcggcgatttccgcggcagcacgg 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193535 aggccgtgttcctccgggctgtgaagctctacaacagcggcgatttccgcggcagcacgg 21193476
Query: 1118 aggacatggagcgggccctggccgagtacctggccgtctttgcccggtgtctggctggct 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193475 aggacatggagcgggccctggccgagtacctggccgtctttgcccggtgtctggctggct 21193416
Query: 1178 gcgagggggcccacgagcaggtggacttcaaggacttctatccatccatagcaggtatct 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193415 gcgagggggcccacgagcaggtggacttcaaggacttctatccatccatagcaggtatct 21193356
Query: 1238 cctgagccagattccggtgggcatccctctcagccacaggtccctgcttcccagaactcc 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193355 cctgagccagattccggtgggcatccctctcagccacaggtccctgcttcccagaactcc 21193296
Query: 1298 tgcagctccttaacacaacattcatcaggtacacgattatggcgcacctactaagtgctt 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193295 tgcagctccttaacacaacattcatcaggtacacgattatggcgcacctactaagtgctt 21193236
Query: 1358 gggaggcagacaggaggaaggcgttatccagactcgcagcgctttcagtctcctgagaga 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193235 gggaggcagacaggaggaaggcgttatccagactcgcagcgctttcagtctcctgagaga 21193176
Query: 1418 ggctaacagatcacctgccactgggtgcagagggctacagtgggcaatgtccaaggtgct 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193175 ggctaacagatcacctgccactgggtgcagagggctacagtgggcaatgtccaaggtgct 21193116
Query: 1478 gggcatcagtgcagagaggatgtgacaccccagaggggtctggggagcctggattctcag 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193115 gggcatcagtgcagagaggatgtgacaccccagaggggtctggggagcctggattctcag 21193056
Query: 1538 gtcttccaggctgagggtgcttcaggtgccaaggtgccaaggtgagaaacagcccagcag 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193055 gtcttccaggctgagggtgcttcaggtgccaaggtgccaaggtgagaaacagcccagcag 21192996
Query: 1598 gtgtgcgcagaaagcagtttgtggccagaaatcaccccgagtctggagatccctcagttg 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21192995 gtgtgcgcagaaagcagtttgtggccagaaatcaccccgagtctggagatccctcagttg 21192936
Query: 1658 ggggaaaaaggactggcctgagcttctttatctgggcctcagtcccacctcccaacctca 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21192935 ggggaaaaaggactggcctgagcttctttatctgggcctcagtcccacctcccaacctca 21192876
Query: 1718 tctgccattccttcagagtgccctggcttcctctggcttcggggtggcggctgaactgtg 1777
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 21192875 tctgccattccttcagagtgccctggcttcctctggcttcggggtggcggctgagctgtg 21192816
Query: 1778 ggggtggtctgcccagcccaccagtagcttccctcagcatcgctcgtcactttatacgcc 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21192815 ggggtggtctgcccagcccaccagtagcttccctcagcatcgctcgtcactttatacgcc 21192756
Query: 1838 ttatcgcatangatcagctgg 1858
|||||||||| ||||||||||
Sbjct: 21192755 ttatcgcataagatcagctgg 21192735
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Minus
Query: 400 agagccggccggcgcggagggggcatggctcggacggcgtgggggctgctgtggctgctg 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194443 agagccggccggcgcggagggggcatggctcggacggcgtgggggctgctgtggctgctg 21194384
Query: 460 ctgggcagcgcaggggcgcagtacgagaagtacagcttccggggcttcccgcccgaggac 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194383 ctgggcagcgcaggggcgcagtacgagaagtacagcttccggggcttcccgcccgaggac 21194324
Query: 520 ctgatgcccctggccgcggcctacgggcacgcgctggagcagtacgagggcgagagctgg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194323 ctgatgcccctggccgcggcctacgggcacgcgctggagcagtacgagggcgagagctgg 21194264
Query: 580 cgcgagagcgcgcgctacctcgaggcggcgctgcggctgcaccggctgctgcgggacagc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194263 cgcgagagcgcgcgctacctcgaggcggcgctgcggctgcaccggctgctgcgggacagc 21194204
Query: 640 gaggccttctgccacgccaactgca 664
|||||||||||||||||||||||||
Sbjct: 21194203 gaggccttctgccacgccaactgca 21194179
Score = 478 bits (241), Expect = e-132
Identities = 306/328 (93%), Gaps = 13/328 (3%)
Strand = Plus / Minus
Query: 1 gtcggtgatggaagga-gagcacgttccagggcttgggcaaaggagagggaggtggcacg 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194833 gtcggtgatggaaggaagagcacgttccagggcttgggcaaaggagagggaggtggcacg 21194774
Query: 60 cccctcgatttctctattttaaggtnnnnnnnnnctgtctttgtgtaggaagggctttct 119
||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 21194773 cccctcgatttctctattttaaggtggggggga-ctgtctttgtataggaagggctttct 21194715
Query: 120 gggctctcccacccctgtgggaagcgttcccc-acccactcaccatctgccgaggggcag 178
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 21194714 gggctctcccacccctgtgggaagcgttcccccacccactcaccatctgccgagg----- 21194660
Query: 179 gacctcaagggcaggagatcaacgactaaggacagcgctgggctttctgaaaagagtgga 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194659 -----caagggcaggagatcaacgactaaggacagcgctgggctttctgaaaagagtgga 21194605
Query: 239 gacgaaggcctcggcccttcgggggatctgactcaaggcatcaccccgcctcgccgcccc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194604 gacgaaggcctcggcccttcgggggatctgactcaaggcatcaccccgcctcgccgcccc 21194545
Query: 299 cagtcccggcgctaagacccagcgggca 326
||||||||||||||||||||||||||||
Sbjct: 21194544 cagtcccggcgctaagacccagcgggca 21194517
Score = 387 bits (195), Expect = e-104
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 713 accccgacggcggtcacgaagacgagtgggcccgcgagctgcagctcttcggccacgtcc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194130 accccgacggcggtcacgaagacgagtgggcccgcgagctgcagctcttcggccacgtcc 21194071
Query: 773 tggagcgcgccgcctgcctgcggcgctgcaagcgttcgctgcccgccttccaggtgccct 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194070 tggagcgcgccgcctgcctgcggcgctgcaagcgttcgctgcccgccttccaggtgccct 21194011
Query: 833 acccgccgcgccagctgctgcgcgacttccagagccgcctgccctaccagtacttgcact 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21194010 acccgccgcgccagctgctgcgcgacttccagagccgcctgccctaccagtacttgcact 21193951
Query: 893 acgcgcagttcaagg 907
|||||||||||||||
Sbjct: 21193950 acgcgcagttcaagg 21193936
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 905 aggctaaccggctggagaaggcggtggccgcggcctacaccttcctccagaggaacccga 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193805 aggctaaccggctggagaaggcggtggccgcggcctacaccttcctccagaggaacccga 21193746
Query: 965 agcacgagctcaccgccaagtacctcaactactatcgggggctgctggacgccgccgagg 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21193745 agcacgagctcaccgccaagtacctcaactactatcgggggctgctggacgccgccgagg 21193686
Query: 1025 agcccctcacggacttggaggcccagccctacgagg 1060
||||||||||||||||||||||||||||||||||||
Sbjct: 21193685 agcccctcacggacttggaggcccagccctacgagg 21193650
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,249,130
Number of extensions: 306
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 7
Length of query: 1858
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1836
Effective length of database: 2,808,408,574
Effective search space: 5156238141864
Effective search space used: 5156238141864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)