Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008170
(981 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069840.1| G1/S-specific cyclin-D2 [Bos taurus]. 433 e-121
Alignment gi|NP_001029881.1| G1/S-specific cyclin-D3 [Bos taurus]. 283 2e-76
Alignment gi|NP_001039738.1| G1/S-specific cyclin-D1 [Bos taurus]. 279 2e-75
Alignment gi|NP_001068591.1| cyclin-A2 [Bos taurus]. 75 7e-14
Alignment gi|NP_001015665.1| G1/S-specific cyclin-E2 [Bos taurus]. 72 1e-12
Alignment gi|XP_002691847.1| PREDICTED: cyclin A1 [Bos taurus]. 71 2e-12
Alignment gi|XP_600212.3| PREDICTED: cyclin A1 [Bos taurus]. 71 2e-12
Alignment gi|NP_001039337.1| G2/mitotic-specific cyclin-B1 [Bos taurus]. 67 2e-11
Alignment gi|NP_001179705.1| G1/S-specific cyclin-E1 [Bos taurus]. 65 1e-10
Alignment gi|XP_002694960.1| PREDICTED: cyclin E1 [Bos taurus]. 65 1e-10
>ref|NP_001069840.1| G1/S-specific cyclin-D2 [Bos taurus].
Length = 289
Score = 433 bits (1113), Expect = e-121
Identities = 216/232 (93%), Positives = 218/232 (93%)
Frame = +3
Query: 282 MELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 461
MELLC EV+PVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA
Sbjct: 1 MELLCGEVEPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 60
Query: 462 TWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 641
TWML FPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA
Sbjct: 61 TWMLEVCEEQKCEEEVFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 120
Query: 642 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKH 821
EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQP+EKLSLIRKH
Sbjct: 121 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPSEKLSLIRKH 180
Query: 822 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQ DEDVSSLTGDALVDLL
Sbjct: 181 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEDVSSLTGDALVDLL 232
>ref|NP_001029881.1| G1/S-specific cyclin-D3 [Bos taurus].
Length = 292
Score = 283 bits (723), Expect = 2e-76
Identities = 141/233 (60%), Positives = 177/233 (75%), Gaps = 1/233 (0%)
Frame = +3
Query: 282 MELLCCE-VDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 458
MELLCCE RA PD LL D RVLQ+LL +EERY+P+ SYF+CVQ++I+P+MR+M+
Sbjct: 1 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML 60
Query: 459 ATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLT 638
A WML FPLA+NYLDR+L+ VPT K LQLLGAVCM LASKL+ET PLT
Sbjct: 61 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT 120
Query: 639 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRK 818
EKLCIYTD+S+ P++L +WE++VLGKLKW+LAAV HDF+ IL +L P ++ +L++K
Sbjct: 121 IEKLCIYTDHSVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPRDRQALVKK 180
Query: 819 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
HAQTF+ALCATD+ FAMYPPSMIATGS+GAA+ GL S +GD L +LL
Sbjct: 181 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGL----GACSTSGDELTELL 229
>ref|NP_001039738.1| G1/S-specific cyclin-D1 [Bos taurus].
Length = 295
Score = 279 bits (714), Expect = 2e-75
Identities = 140/216 (64%), Positives = 164/216 (75%)
Frame = +3
Query: 276 LAMELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRM 455
+A +LLCCE++ +RRA PDANLL+D RVL+ +L EE P SYFKCVQK+I P MR++
Sbjct: 1 MAHQLLCCEMETIRRAYPDANLLND-RVLRAMLKAEETCAPSVSYFKCVQKEILPSMRKI 59
Query: 456 VATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPL 635
VATWML FPLA+NYLDRFL+ P K+ LQLLGA CMF+ASK+KETIPL
Sbjct: 60 VATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPL 119
Query: 636 TAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIR 815
TAEKLCIYTDNSI+P ELL ELV++ KLKWNLAA+TPHDFIEH L K+P E +IR
Sbjct: 120 TAEKLCIYTDNSIRPDELLHMELVLVNKLKWNLAAMTPHDFIEHFLSKMPVAEENKQIIR 179
Query: 816 KHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGL 923
KHAQTF+ALCATD KF PPSM+A GSV AA GL
Sbjct: 180 KHAQTFVALCATDVKFISNPPSMVAAGSVAAAAQGL 215
>ref|NP_001068591.1| cyclin-A2 [Bos taurus].
Length = 430
Score = 75.5 bits (184), Expect = 7e-14
Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 2/240 (0%)
Frame = +3
Query: 201 PLPYPLQKLPNFSSPEIAGERVGTQLAMELLCCEVDPVR-RAVPDANLLHDDRVLQNLLT 377
PL YP+ +F SP + M ++ + PV VPD H+D + L
Sbjct: 141 PLDYPMDG--SFESPHT--------MEMSVVLEDEKPVSVNEVPD---YHED-IHTYLRE 186
Query: 378 IEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVP 557
+E + P+ Y K Q DI MR ++ W++ LA+NY+DRFL+ +
Sbjct: 187 MEVKCKPKVGYMK-KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS 245
Query: 558 TPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLA 737
+ LQL+G M LASK +E P + TD++ +++L E +VL L ++LA
Sbjct: 246 VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLA 305
Query: 738 AVTPHDFI-EHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAI 914
A T + F+ ++ L + P + SL + ++L D + Y PS+IA + A+
Sbjct: 306 APTINQFLTQYFLHQQPANCKVESLAMFLGE--LSLIDAD-PYLKYLPSVIAAAAFHLAL 362
>ref|NP_001015665.1| G1/S-specific cyclin-E2 [Bos taurus].
Length = 404
Score = 71.6 bits (174), Expect = 1e-12
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 1/142 (0%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+PD + V N+L E RY+ +F+ + +++P MR ++ W+L
Sbjct: 102 LPDLSWGCSQDVWLNMLKKETRYVHD-KHFEVLHSELEPQMRSILLDWLLEVCEVYTLHR 160
Query: 504 XXFPLAINYLDRF-LAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DRF L K LQL+G +F+ASKL+E ++ TD +
Sbjct: 161 ETFYLAQDFFDRFMLTQKDINKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSE 220
Query: 681 QELLEWELVVLGKLKWNLAAVT 746
+++L EL +L LKW L VT
Sbjct: 221 EDILRMELAILKALKWELCPVT 242
>ref|XP_002691847.1| PREDICTED: cyclin A1 [Bos taurus].
Length = 421
Score = 70.9 bits (172), Expect = 2e-12
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 3/212 (1%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E R+ P+ Y + Q DI MR ++ W+ LA+N+
Sbjct: 169 EEIHQYLREAEIRHRPKAHYMR-KQPDITESMRTILVDWLAEVGEEYKLRAETLYLAVNF 227
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G + LASK +E P ++ TD++ ++LL E ++
Sbjct: 228 LDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITDDTYTKRQLLRMEHLL 287
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L ++L T + F+ LR+ +L + A+ ++L D F Y PS+IA
Sbjct: 288 LKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 344
Query: 891 TGSVGAAICGLQP---DEDVSSLTGDALVDLL 977
+ A + E +++ TG +L +++
Sbjct: 345 AAAYCLANYTVNRHFWPETLATFTGYSLTEIV 376
>ref|XP_600212.3| PREDICTED: cyclin A1 [Bos taurus].
Length = 421
Score = 70.9 bits (172), Expect = 2e-12
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 3/212 (1%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E R+ P+ Y + Q DI MR ++ W+ LA+N+
Sbjct: 169 EEIHQYLREAEIRHRPKAHYMR-KQPDITESMRTILVDWLAEVGEEYKLRAETLYLAVNF 227
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G + LASK +E P ++ TD++ ++LL E ++
Sbjct: 228 LDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITDDTYTKRQLLRMEHLL 287
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L ++L T + F+ LR+ +L + A+ ++L D F Y PS+IA
Sbjct: 288 LKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 344
Query: 891 TGSVGAAICGLQP---DEDVSSLTGDALVDLL 977
+ A + E +++ TG +L +++
Sbjct: 345 AAAYCLANYTVNRHFWPETLATFTGYSLTEIV 376
>ref|NP_001039337.1| G2/mitotic-specific cyclin-B1 [Bos taurus].
Length = 427
Score = 67.0 bits (162), Expect = 2e-11
Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 8/227 (3%)
Frame = +3
Query: 258 ERVGTQLAMELLCCEVDPVRRAVPDANLLH--DDRVLQNLLTIEERYLPQCSYFKCVQ-- 425
E G A E LC V AV D + D + + YL Q + V+
Sbjct: 125 ETSGCAPAEEYLCQAFSDVILAVSDVDAEDGADPNLCSEYVKDIYAYLRQLEEEQAVKPK 184
Query: 426 ----KDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAV 593
+++ MR ++ W++ + ++ +DRF+ PK LQL+G
Sbjct: 185 YLMGREVTGNMRAILIDWLVQVQIKFRLLQETMYMTVSIIDRFMQDTYVPKKMLQLVGVT 244
Query: 594 CMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHIL 773
MF+ASK +E P TDN+ ++ + E+ +L L ++L P H L
Sbjct: 245 AMFVASKYEEMYPPEIGDFAFVTDNTYTKFQIRQMEMKILRALNFSLGRPLP----LHFL 300
Query: 774 RKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAI 914
R+ + E + A+ + L D+ +PPS IA G+ A+
Sbjct: 301 RRASKIGEVDVELHTLAKYLMELTMLDYDMVHFPPSQIAAGAFCLAL 347
>ref|NP_001179705.1| G1/S-specific cyclin-E1 [Bos taurus].
Length = 411
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+P N + + V + +L E+ YL + +QP MR ++ W++
Sbjct: 106 LPVLNWANREEVWKIMLNKEKTYLRD-KHLMQRHPLLQPKMRAILLDWLMEVCEVYKLHR 164
Query: 504 XXFPLAINYLDRFLAGVPTP-KTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DR++A KT LQL+G +F+A+KL+E P + TD +
Sbjct: 165 ETFYLAQDFFDRYMATQQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 224
Query: 681 QELLEWELVVLGKLKWNLAAVT 746
E+L EL+++ LKW+L+ +T
Sbjct: 225 DEILTMELIIMKALKWHLSPLT 246
>ref|XP_002694960.1| PREDICTED: cyclin E1 [Bos taurus].
Length = 554
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+P N + + V + +L E+ YL + +QP MR ++ W++
Sbjct: 249 LPVLNWANREEVWKIMLNKEKTYLRD-KHLMQRHPLLQPKMRAILLDWLMEVCEVYKLHR 307
Query: 504 XXFPLAINYLDRFLAGVPTP-KTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DR++A KT LQL+G +F+A+KL+E P + TD +
Sbjct: 308 ETFYLAQDFFDRYMATQQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 367
Query: 681 QELLEWELVVLGKLKWNLAAVT 746
E+L EL+++ LKW+L+ +T
Sbjct: 368 DEILTMELIIMKALKWHLSPLT 389
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,516,568
Number of extensions: 842513
Number of successful extensions: 3987
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3970
Number of HSP's successfully gapped: 22
Length of query: 327
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,273,310
Effective search space: 3197221440
Effective search space used: 3197221440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008170
(981 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854586.1| PREDICTED: similar to G1/S-specific cyclin D2 [... 436 e-122
Alignment gi|NP_001005757.1| G1/S-specific cyclin-D1 [Canis lupus familia... 279 3e-75
Alignment gi|XP_852046.1| PREDICTED: similar to G1/S-specific cyclin D3 i... 208 7e-54
Alignment gi|XP_864857.1| PREDICTED: similar to G1/S-specific cyclin D3 i... 200 2e-51
Alignment gi|XP_864879.1| PREDICTED: similar to G1/S-specific cyclin D3 i... 119 3e-27
Alignment gi|XP_544185.2| PREDICTED: similar to cyclin E2 isoform 1 [Cani... 74 2e-13
Alignment gi|XP_540965.2| PREDICTED: similar to Cyclin A2 (Cyclin A) isof... 74 2e-13
Alignment gi|XP_541724.2| PREDICTED: similar to cyclin E1 isoform 1 [Cani... 69 5e-12
Alignment gi|XP_534494.2| PREDICTED: similar to cyclin A1 (predicted) [Ca... 69 7e-12
Alignment gi|XP_851164.1| PREDICTED: similar to G2/mitotic-specific cycli... 65 7e-11
>ref|XP_854586.1| PREDICTED: similar to G1/S-specific cyclin D2 [Canis familiaris].
Length = 289
Score = 436 bits (1120), Expect = e-122
Identities = 216/232 (93%), Positives = 219/232 (94%)
Frame = +3
Query: 282 MELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 461
MELLCCEVDPVRRAVPDANLL+DDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA
Sbjct: 1 MELLCCEVDPVRRAVPDANLLYDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 60
Query: 462 TWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 641
TWML FPLA+NYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA
Sbjct: 61 TWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 120
Query: 642 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKH 821
EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQP+EKLSLIRKH
Sbjct: 121 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPSEKLSLIRKH 180
Query: 822 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQ DEDVSSLTGDALVDLL
Sbjct: 181 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEDVSSLTGDALVDLL 232
>ref|NP_001005757.1| G1/S-specific cyclin-D1 [Canis lupus familiaris].
Length = 295
Score = 279 bits (713), Expect = 3e-75
Identities = 143/234 (61%), Positives = 171/234 (73%)
Frame = +3
Query: 276 LAMELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRM 455
+A +LLCCEV+ +RRA PDANLL+D RVL+ +L EE P SYFKCVQK+I P MR++
Sbjct: 1 MAHQLLCCEVETIRRAYPDANLLND-RVLRAMLKAEETCAPSVSYFKCVQKEILPSMRKI 59
Query: 456 VATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPL 635
VATWML FPLA+NYL+RFL+ P K+ LQLLGA CMF+ASK+KETIPL
Sbjct: 60 VATWMLEVCEEQKCEEEVFPLAMNYLNRFLSLEPVKKSRLQLLGATCMFVASKMKETIPL 119
Query: 636 TAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIR 815
TAEKLCIYTDNSI+P ELL+ EL+++ KLKWNLAA+TPHDFIEH L K+P E +IR
Sbjct: 120 TAEKLCIYTDNSIRPDELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPVAEENKQIIR 179
Query: 816 KHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
KHAQTF+ALCATD KF PPSM+A GSV AA+ GL S L+ L L
Sbjct: 180 KHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLHLGSSNSFLSYHRLTRFL 233
>ref|XP_852046.1| PREDICTED: similar to G1/S-specific cyclin D3 isoform 1 [Canis
familiaris].
Length = 242
Score = 208 bits (529), Expect = 7e-54
Identities = 101/156 (64%), Positives = 126/156 (80%)
Frame = +3
Query: 510 FPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQEL 689
FPLA+NYLDR+L+ VPT K LQLLGAVCM LASKL+ET PLT EKLCIYTD+S+ P++L
Sbjct: 28 FPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHSVSPRQL 87
Query: 690 LEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAM 869
+WE++VLGKLKW+LAAV HDF+ IL +L P ++ +L++KHAQTF+ALCATD+ FAM
Sbjct: 88 RDWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPQDRQALVKKHAQTFLALCATDYTFAM 147
Query: 870 YPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
YPPSMIATGS+GAA+ GL S +GD L +LL
Sbjct: 148 YPPSMIATGSIGAAVQGL----GACSTSGDELTELL 179
>ref|XP_864857.1| PREDICTED: similar to G1/S-specific cyclin D3 isoform 2 [Canis
familiaris].
Length = 211
Score = 200 bits (508), Expect = 2e-51
Identities = 97/152 (63%), Positives = 122/152 (80%)
Frame = +3
Query: 522 INYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWE 701
+NYLDR+L+ VPT K LQLLGAVCM LASKL+ET PLT EKLCIYTD+S+ P++L +WE
Sbjct: 1 MNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHSVSPRQLRDWE 60
Query: 702 LVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPS 881
++VLGKLKW+LAAV HDF+ IL +L P ++ +L++KHAQTF+ALCATD+ FAMYPPS
Sbjct: 61 VLVLGKLKWDLAAVIAHDFLALILHRLSLPQDRQALVKKHAQTFLALCATDYTFAMYPPS 120
Query: 882 MIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
MIATGS+GAA+ GL S +GD L +LL
Sbjct: 121 MIATGSIGAAVQGL----GACSTSGDELTELL 148
>ref|XP_864879.1| PREDICTED: similar to G1/S-specific cyclin D3 isoform 3 [Canis
familiaris].
Length = 220
Score = 119 bits (299), Expect = 3e-27
Identities = 58/97 (59%), Positives = 75/97 (77%)
Frame = +3
Query: 687 LLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFA 866
L +WE++VLGKLKW+LAAV HDF+ IL +L P ++ +L++KHAQTF+ALCATD+ FA
Sbjct: 65 LEDWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPQDRQALVKKHAQTFLALCATDYTFA 124
Query: 867 MYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
MYPPSMIATGS+GAA+ GL S +GD L +LL
Sbjct: 125 MYPPSMIATGSIGAAVQGL----GACSTSGDELTELL 157
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = +3
Query: 282 MELLCCE-VDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 458
MELLCCE RA PD LL D RVLQ+LL +EERY+P+ SYF+CVQ++I+P+MR+M+
Sbjct: 1 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML 60
Query: 459 ATWMLXXXXXXXXXXXXFPLAINYLDRFLA 548
A WML + LA FLA
Sbjct: 61 AYWMLEDWEVLVLGKLKWDLAAVIAHDFLA 90
>ref|XP_544185.2| PREDICTED: similar to cyclin E2 isoform 1 [Canis familiaris].
Length = 466
Score = 74.3 bits (181), Expect = 2e-13
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+PD + V N+L E RY+ +F+ + D++P MR ++ W+L
Sbjct: 164 LPDLSWGCSKDVWLNMLKKESRYVHD-KHFEVLHSDLEPQMRSILLDWLLEVCEVYTLHR 222
Query: 504 XXFPLAINYLDRF-LAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DRF L K LQL+G +F+ASKL+E ++ TD +
Sbjct: 223 ETFYLAQDFFDRFMLTQKDINKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSE 282
Query: 681 QELLEWELVVLGKLKWNLAAVT 746
+++L EL++L LKW L VT
Sbjct: 283 EDILRMELIILKALKWELCPVT 304
>ref|XP_540965.2| PREDICTED: similar to Cyclin A2 (Cyclin A) isoform 1 [Canis
familiaris].
Length = 432
Score = 73.9 bits (180), Expect = 2e-13
Identities = 69/261 (26%), Positives = 110/261 (42%), Gaps = 3/261 (1%)
Frame = +3
Query: 201 PLPYPLQKLPNFSSPEIAGERVGTQLAMELLCCEVDPVRRAVPDANLLHDDRVLQNLLTI 380
PL YP+ +F SP M++ D +V + H+D + L +
Sbjct: 143 PLDYPMDG--SFESPH----------TMDISIVLEDEKPLSVNEVPDYHED-IHTYLREM 189
Query: 381 EERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPT 560
E + P+ Y K Q DI MR ++ W++ LA+NY+DRFL+ +
Sbjct: 190 EVKCKPKVGYMK-KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV 248
Query: 561 PKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAA 740
+ LQL+G M LASK +E P + TD++ +++L E +VL L ++LAA
Sbjct: 249 LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLAA 308
Query: 741 VTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAA--- 911
T + F+ N K+ + + A + Y PS+IA + A
Sbjct: 309 PTVNQFLTQYFLHQQSANCKVESLAMFLGELSLIDAD--PYLKYLPSVIAAAAFHLALYT 366
Query: 912 ICGLQPDEDVSSLTGDALVDL 974
+ G E + TG L L
Sbjct: 367 VTGQSWPESLVQKTGYTLESL 387
>ref|XP_541724.2| PREDICTED: similar to cyclin E1 isoform 1 [Canis familiaris].
Length = 456
Score = 69.3 bits (168), Expect = 5e-12
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 1/142 (0%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+P N + D V + +L E+ YL +F +QP MR ++ W++
Sbjct: 151 LPLLNWANRDEVWKIMLNKEKTYLRD-KHFMQRHPLLQPKMRAILLDWLMEVCEVYKLHR 209
Query: 504 XXFPLAINYLDRFLAGVPT-PKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DR++A KT LQL+G +F+A+KL+E P + TD +
Sbjct: 210 ETFYLAQDFFDRYMATQQNIVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 269
Query: 681 QELLEWELVVLGKLKWNLAAVT 746
+E+L EL+++ LKW+L+ +T
Sbjct: 270 EEILSMELIIMKALKWHLSPLT 291
>ref|XP_534494.2| PREDICTED: similar to cyclin A1 (predicted) [Canis familiaris].
Length = 458
Score = 68.9 bits (167), Expect = 7e-12
Identities = 42/143 (29%), Positives = 72/143 (50%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E R+ P+ Y + Q DI MR ++ W++ LA+N+
Sbjct: 206 EEIHQYLREAEIRHRPKAHYMR-KQPDITESMRTILVDWLVEVGEEYKLRAETLYLAVNF 264
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G + LASK +E P ++ TD++ ++LL E ++
Sbjct: 265 LDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITDDTYTKRQLLRMEHLL 324
Query: 711 LGKLKWNLAAVTPHDFIEHILRK 779
L L ++L T + F+ LR+
Sbjct: 325 LKVLAFDLTVPTTNQFLLQYLRR 347
>ref|XP_851164.1| PREDICTED: similar to G2/mitotic-specific cyclin B1 isoform 1
[Canis familiaris].
Length = 425
Score = 65.5 bits (158), Expect = 7e-11
Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 8/227 (3%)
Frame = +3
Query: 258 ERVGTQLAMELLCCEVDPVRRAVPDANLLH--DDRVLQNLLTIEERYLPQCSYFKCVQ-- 425
E G A E LC V AV D + D + + YL Q + V+
Sbjct: 123 ETSGCAPAEEYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYLRQLEEEQAVKPK 182
Query: 426 ----KDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAV 593
+++ MR ++ W++ + ++ +DRF+ PK LQL+G
Sbjct: 183 YLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVT 242
Query: 594 CMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHIL 773
MF+ASK +E P TDN+ ++ + E+ +L L + L P H L
Sbjct: 243 AMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRSLNFGLGRPLP----LHFL 298
Query: 774 RKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAI 914
R+ + E A+ + L D+ +PPS IA G+ A+
Sbjct: 299 RRASKIGEVDVEQHTLAKYLMELSMLDYDMVHFPPSQIAAGAFCLAL 345
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,068,797
Number of extensions: 872421
Number of successful extensions: 4263
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 4243
Number of HSP's successfully gapped: 35
Length of query: 327
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,440,896
Effective search space: 3458760704
Effective search space used: 3458760704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008170
(981 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999253.1| G1/S-specific cyclin-D2 [Sus scrofa]. 441 e-124
Alignment gi|NP_001072146.1| G1/S-specific cyclin-D3 [Sus scrofa]. 278 3e-75
Alignment gi|XP_001928285.1| PREDICTED: cyclin-A1 [Sus scrofa]. 77 2e-14
Alignment gi|XP_003361818.1| PREDICTED: cyclin-A1-like [Sus scrofa]. 75 7e-14
Alignment gi|NP_001230860.1| cyclin E2 [Sus scrofa]. 74 9e-14
Alignment gi|NP_001171397.1| cyclin-A2 [Sus scrofa]. 73 2e-13
Alignment gi|XP_003127053.1| PREDICTED: g1/S-specific cyclin-E1 [Sus scro... 67 2e-11
Alignment gi|NP_001164239.1| G2/mitotic-specific cyclin-B1 [Sus scrofa]. 65 7e-11
Alignment gi|XP_003129146.1| PREDICTED: cyclin-I isoform 2 [Sus scrofa]. 61 8e-10
Alignment gi|NP_001107754.1| G2/mitotic-specific cyclin-B2 [Sus scrofa]. 60 1e-09
>ref|NP_999253.1| G1/S-specific cyclin-D2 [Sus scrofa].
Length = 288
Score = 441 bits (1134), Expect = e-124
Identities = 219/232 (94%), Positives = 219/232 (94%)
Frame = +3
Query: 282 MELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 461
MELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA
Sbjct: 1 MELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 60
Query: 462 TWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 641
TWML FPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA
Sbjct: 61 TWMLEVCEEQKCEEEVFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 120
Query: 642 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKH 821
EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKH
Sbjct: 121 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKH 180
Query: 822 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQ DEDVSSLTGDALVDLL
Sbjct: 181 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEDVSSLTGDALVDLL 232
>ref|NP_001072146.1| G1/S-specific cyclin-D3 [Sus scrofa].
Length = 292
Score = 278 bits (712), Expect = 3e-75
Identities = 139/233 (59%), Positives = 176/233 (75%), Gaps = 1/233 (0%)
Frame = +3
Query: 282 MELLCCE-VDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 458
MELLCCE RA PD + D RVLQ+LL +EERY+P+ SYF+CVQ++I+P+MR+M+
Sbjct: 1 MELLCCEGTRHAPRAGPDPRVGGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML 60
Query: 459 ATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLT 638
A WML FPLA+NYLDR+L+ VPT K LQLLGAVCM LASKL+ET PLT
Sbjct: 61 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT 120
Query: 639 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRK 818
EKLCIYTD+S+ P++L +WE++VLGKLKW+LAAV HDF+ IL +L P ++ +L++K
Sbjct: 121 IEKLCIYTDHSVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLALILHRLALPRDRQALVKK 180
Query: 819 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
HAQTF+ALCATD+ FAMYPPSMIATGS+GAA+ GL S +GD L +LL
Sbjct: 181 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGL----GACSTSGDELTELL 229
>ref|XP_001928285.1| PREDICTED: cyclin-A1 [Sus scrofa].
Length = 421
Score = 76.6 bits (187), Expect = 2e-14
Identities = 55/183 (30%), Positives = 90/183 (49%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E RY P+ Y + Q DI MR ++ W++ LA+N+
Sbjct: 169 EEIHQYLREAEMRYRPKAHYMR-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 227
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G + LASK +E P ++ TD++ ++LL E ++
Sbjct: 228 LDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITDDTYTKRQLLRMEHLL 287
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L +NL A T + F+ LR+ +L + A+ ++L D F Y PS+IA
Sbjct: 288 LKVLAFNLTAPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 344
Query: 891 TGS 899
+
Sbjct: 345 AAA 347
>ref|XP_003361818.1| PREDICTED: cyclin-A1-like [Sus scrofa].
Length = 545
Score = 74.7 bits (182), Expect = 7e-14
Identities = 54/183 (29%), Positives = 90/183 (49%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E RY P+ Y + Q DI MR ++ W++ LA+N+
Sbjct: 293 EEIHQYLREAEMRYRPKAHYMR-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 351
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G + LASK +E P ++ TD++ ++LL E ++
Sbjct: 352 LDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPEVDEFVYITDDTYTKRQLLRMEHLL 411
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L ++L A T + F+ LR+ +L + A+ ++L D F Y PS+IA
Sbjct: 412 LKVLAFDLTAPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 468
Query: 891 TGS 899
+
Sbjct: 469 AAA 471
>ref|NP_001230860.1| cyclin E2 [Sus scrofa].
Length = 405
Score = 74.3 bits (181), Expect = 9e-14
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+PD + V N+L E RY+ +F+ + D++P MR ++ W+L
Sbjct: 103 LPDLSWGCSQDVWLNMLKKETRYVHD-KHFEVLHSDLEPQMRSILLDWLLEVCEVYTLHR 161
Query: 504 XXFPLAINYLDRF-LAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DRF L K LQL+G +F+ASKL+E ++ TD +
Sbjct: 162 ETFYLAQDFFDRFMLTQKDINKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSE 221
Query: 681 QELLEWELVVLGKLKWNLAAVT 746
+++L EL++L LKW L VT
Sbjct: 222 EDILRMELIILKALKWELCPVT 243
>ref|NP_001171397.1| cyclin-A2 [Sus scrofa].
Length = 432
Score = 73.2 bits (178), Expect = 2e-13
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 1/188 (0%)
Frame = +3
Query: 201 PLPYPLQKLPNFSSPEIAGERVGTQLAMELLCCEVDPVR-RAVPDANLLHDDRVLQNLLT 377
PL YP+ +F SP + M ++ + PV VPD H+D + L
Sbjct: 143 PLDYPMDG--SFESPHT--------MDMSIVLEDEKPVSVNEVPD---YHED-IHTYLRE 188
Query: 378 IEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVP 557
+E + P+ Y K Q DI MR ++ W++ LA+NY+DRFL+ +
Sbjct: 189 MEVKCKPKVGYMK-KQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS 247
Query: 558 TPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLA 737
+ LQL+G M LASK +E P + TD++ +++L E +VL L ++LA
Sbjct: 248 VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLAFDLA 307
Query: 738 AVTPHDFI 761
A T + F+
Sbjct: 308 APTINQFL 315
>ref|XP_003127053.1| PREDICTED: g1/S-specific cyclin-E1 [Sus scrofa].
Length = 410
Score = 67.0 bits (162), Expect = 2e-11
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 14/207 (6%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+P N + + V + +L E+ YL + +QP MR ++ W++
Sbjct: 105 LPILNWANREEVWKIMLNKEKTYLRD-KHLMQRHPLLQPKMRAILLDWLMEVCEVYKLHR 163
Query: 504 XXFPLAINYLDRFLAGVPTP-KTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DR++A KT LQL+G +F+A+KL+E P + TD +
Sbjct: 164 ETFYLAQDFFDRYMATQQNVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSG 223
Query: 681 QELLEWELVVLGKLKWNLAAVT-------------PHDFIEHILRKLPQPNEKLSLIRKH 821
E+L EL+++ LKW+L+ +T +DF E +L + PQ I
Sbjct: 224 DEILTMELIIMKALKWHLSPLTIVSWLNVYMQVAYLNDFYEVLLPQYPQQ------IFIQ 277
Query: 822 AQTFIALCATDFKFAMYPPSMIATGSV 902
+ LC D +P ++A ++
Sbjct: 278 IAELLDLCVLDVGCLEFPYGVLAASAL 304
>ref|NP_001164239.1| G2/mitotic-specific cyclin-B1 [Sus scrofa].
Length = 435
Score = 64.7 bits (156), Expect = 7e-11
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 10/224 (4%)
Frame = +3
Query: 258 ERVGTQLAMELLCCEVDPVRRAVPDA--------NLLHD--DRVLQNLLTIEERYLPQCS 407
E G A E LC V AV D NL + + L +EE +
Sbjct: 133 ETSGCAPAEEYLCQAFSDVILAVNDVDAEDGGDPNLCSEYVKDIYDYLRQLEEEQAVRPK 192
Query: 408 YFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLG 587
Y + +++ MR ++ W++ + ++ +DRF+ PK LQL+G
Sbjct: 193 YL--LGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVG 250
Query: 588 AVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEH 767
MF+ASK +E P TDN+ ++ + E+ +L L + L P H
Sbjct: 251 VTAMFIASKYEEMYPPEIGDFAFVTDNTYTKYQIRQMEMKILRALNFCLGRPLP----LH 306
Query: 768 ILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGS 899
LR+ + E + A+ + L D+ +PPS IA G+
Sbjct: 307 FLRRASKIGEVDVELHTLAKYLMELTMLDYDMVHFPPSQIAAGA 350
>ref|XP_003129146.1| PREDICTED: cyclin-I isoform 2 [Sus scrofa].
Length = 364
Score = 61.2 bits (147), Expect = 8e-10
Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 20/190 (10%)
Frame = +3
Query: 423 QKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMF 602
+K++ P R V W+ F LA + LDRFLA V +L + C F
Sbjct: 24 EKNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFF 83
Query: 603 LASKL---KETIP----LTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFI 761
LA+K E IP L + C E+L E ++L KL W+L TP DF+
Sbjct: 84 LAAKTVEEDERIPVLKVLARDSFC-----GCSSSEILRMERIILDKLNWDLHTATPLDFL 138
Query: 762 E-----------HILRKLPQ--PNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSV 902
+L LP+ P++ L+++ K + C + + SM+A V
Sbjct: 139 HIFHAIAVSTRPQLLFSLPKLSPSQHLAVLTKQ----LLHCMACNQLLQFKGSMLALAMV 194
Query: 903 GAAICGLQPD 932
+ L PD
Sbjct: 195 SLEMEKLIPD 204
>ref|NP_001107754.1| G2/mitotic-specific cyclin-B2 [Sus scrofa].
Length = 396
Score = 60.5 bits (145), Expect = 1e-09
Identities = 40/158 (25%), Positives = 67/158 (42%)
Frame = +3
Query: 426 KDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFL 605
+DI MR ++ W++ + + +DRFL P + LQL+G + L
Sbjct: 157 RDINGRMRAILVDWLVQVHSKFRLLQETLYMCVAIMDRFLQVQPVSRKKLQLVGITALLL 216
Query: 606 ASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLP 785
ASK +E + TDN+ ++ E E ++L +LK+ L P H LR+
Sbjct: 217 ASKYEEMFSPNIKDFVYITDNAYTSSQIREMETLILKELKFELGRPLP----LHFLRRAS 272
Query: 786 QPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGS 899
+ E A+ + L D+ Y PS +A +
Sbjct: 273 KAGEVDVEQHTLAKYLMELTLVDYDMVHYHPSKVAAAA 310
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,653,667
Number of extensions: 545161
Number of successful extensions: 2572
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2562
Number of HSP's successfully gapped: 20
Length of query: 327
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,879,129
Effective search space: 2024441412
Effective search space used: 2024441412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008170
(981 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033959.1| G1/S-specific cyclin-D2 [Mus musculus]. 411 e-115
Alignment gi|NP_001075105.1| G1/S-specific cyclin-D3 [Mus musculus]. 279 2e-75
Alignment gi|NP_001075104.1| G1/S-specific cyclin-D3 [Mus musculus]. 279 2e-75
Alignment gi|NP_031658.1| G1/S-specific cyclin-D3 [Mus musculus]. 279 2e-75
Alignment gi|NP_031657.1| G1/S-specific cyclin-D1 [Mus musculus]. 278 6e-75
Alignment gi|NP_033958.2| cyclin-A2 [Mus musculus]. 78 1e-14
Alignment gi|NP_001032211.1| G1/S-specific cyclin-E2 isoform 1 [Mus muscu... 77 3e-14
Alignment gi|NP_033960.1| G1/S-specific cyclin-E2 isoform 2 [Mus musculus]. 77 3e-14
Alignment gi|NP_031654.2| cyclin-A1 [Mus musculus]. 69 4e-12
Alignment gi|NP_001074531.1| cyclin-O [Mus musculus]. 69 7e-12
>ref|NP_033959.1| G1/S-specific cyclin-D2 [Mus musculus].
Length = 289
Score = 411 bits (1057), Expect = e-115
Identities = 205/232 (88%), Positives = 213/232 (91%)
Frame = +3
Query: 282 MELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 461
MELLCCEVDPVRRAVPD NLL +DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA
Sbjct: 1 MELLCCEVDPVRRAVPDRNLL-EDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 59
Query: 462 TWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 641
TWML FPLA+NYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA
Sbjct: 60 TWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 119
Query: 642 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKH 821
EKLCIYTDNS+KPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQ EKLSLIRKH
Sbjct: 120 EKLCIYTDNSVKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQKEKLSLIRKH 179
Query: 822 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQ D++V++LT DAL +LL
Sbjct: 180 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDDEVNTLTCDALTELL 231
>ref|NP_001075105.1| G1/S-specific cyclin-D3 [Mus musculus].
Length = 292
Score = 279 bits (714), Expect = 2e-75
Identities = 139/233 (59%), Positives = 175/233 (75%), Gaps = 1/233 (0%)
Frame = +3
Query: 282 MELLCCE-VDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 458
MELLCCE RA PD LL D RVLQ+LL +EERY+P+ SYF+CVQK+I+P+MR+M+
Sbjct: 1 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQKEIKPHMRKML 60
Query: 459 ATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLT 638
A WML FPLA+NYLDR+L+ VPT K LQLLG VC+ LASKL+ET PLT
Sbjct: 61 AYWMLEVCEEQRCEEDVFPLAMNYLDRYLSCVPTRKAQLQLLGTVCLLLASKLRETTPLT 120
Query: 639 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRK 818
EKLCIYTD ++ P +L EWE++VLGKLKW+LAAV HDF+ IL +L P+++ +L++K
Sbjct: 121 IEKLCIYTDQAVAPWQLREWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPSDRQALVKK 180
Query: 819 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
HAQTF+ALCATD+ FAMYPPSMIATGS+GAA+ GL S++ D L +LL
Sbjct: 181 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVLGL----GACSMSADELTELL 229
>ref|NP_001075104.1| G1/S-specific cyclin-D3 [Mus musculus].
Length = 292
Score = 279 bits (714), Expect = 2e-75
Identities = 139/233 (59%), Positives = 175/233 (75%), Gaps = 1/233 (0%)
Frame = +3
Query: 282 MELLCCE-VDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 458
MELLCCE RA PD LL D RVLQ+LL +EERY+P+ SYF+CVQK+I+P+MR+M+
Sbjct: 1 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQKEIKPHMRKML 60
Query: 459 ATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLT 638
A WML FPLA+NYLDR+L+ VPT K LQLLG VC+ LASKL+ET PLT
Sbjct: 61 AYWMLEVCEEQRCEEDVFPLAMNYLDRYLSCVPTRKAQLQLLGTVCLLLASKLRETTPLT 120
Query: 639 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRK 818
EKLCIYTD ++ P +L EWE++VLGKLKW+LAAV HDF+ IL +L P+++ +L++K
Sbjct: 121 IEKLCIYTDQAVAPWQLREWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPSDRQALVKK 180
Query: 819 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
HAQTF+ALCATD+ FAMYPPSMIATGS+GAA+ GL S++ D L +LL
Sbjct: 181 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVLGL----GACSMSADELTELL 229
>ref|NP_031658.1| G1/S-specific cyclin-D3 [Mus musculus].
Length = 292
Score = 279 bits (714), Expect = 2e-75
Identities = 139/233 (59%), Positives = 175/233 (75%), Gaps = 1/233 (0%)
Frame = +3
Query: 282 MELLCCE-VDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 458
MELLCCE RA PD LL D RVLQ+LL +EERY+P+ SYF+CVQK+I+P+MR+M+
Sbjct: 1 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQKEIKPHMRKML 60
Query: 459 ATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLT 638
A WML FPLA+NYLDR+L+ VPT K LQLLG VC+ LASKL+ET PLT
Sbjct: 61 AYWMLEVCEEQRCEEDVFPLAMNYLDRYLSCVPTRKAQLQLLGTVCLLLASKLRETTPLT 120
Query: 639 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRK 818
EKLCIYTD ++ P +L EWE++VLGKLKW+LAAV HDF+ IL +L P+++ +L++K
Sbjct: 121 IEKLCIYTDQAVAPWQLREWEVLVLGKLKWDLAAVIAHDFLALILHRLSLPSDRQALVKK 180
Query: 819 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
HAQTF+ALCATD+ FAMYPPSMIATGS+GAA+ GL S++ D L +LL
Sbjct: 181 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVLGL----GACSMSADELTELL 229
>ref|NP_031657.1| G1/S-specific cyclin-D1 [Mus musculus].
Length = 295
Score = 278 bits (710), Expect = 6e-75
Identities = 138/213 (64%), Positives = 165/213 (77%)
Frame = +3
Query: 285 ELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVAT 464
+LLCCEV+ +RRA PD NLL+D RVL+ +L EE P SYFKCVQK+I P MR++VAT
Sbjct: 4 QLLCCEVETIRRAYPDTNLLND-RVLRAMLKTEETCAPSVSYFKCVQKEIVPSMRKIVAT 62
Query: 465 WMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAE 644
WML FPLA+NYLDRFL+ P K+ LQLLGA CMF+ASK+KETIPLTAE
Sbjct: 63 WMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPLKKSRLQLLGATCMFVASKMKETIPLTAE 122
Query: 645 KLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHA 824
KLCIYTDNSI+P+ELL+ EL+++ KLKWNLAA+TPHDFIEH L K+P+ +E IRKHA
Sbjct: 123 KLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEADENKQTIRKHA 182
Query: 825 QTFIALCATDFKFAMYPPSMIATGSVGAAICGL 923
QTF+ALCATD KF PPSM+A GSV AA+ GL
Sbjct: 183 QTFVALCATDVKFISNPPSMVAAGSVVAAMQGL 215
>ref|NP_033958.2| cyclin-A2 [Mus musculus].
Length = 422
Score = 77.8 bits (190), Expect = 1e-14
Identities = 73/263 (27%), Positives = 115/263 (43%), Gaps = 5/263 (1%)
Frame = +3
Query: 201 PLPYPLQKLPNFSSPEIAGERVGTQLAMEL-LCCEVDPVR-RAVPDANLLHDDRVLQNLL 374
PL YP+ +F SP AM++ + E PV VPD + + + L
Sbjct: 134 PLDYPMDG--SFESPH----------AMDMSIVLEDKPVNVNEVPD----YQEDIHTYLR 177
Query: 375 TIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGV 554
+E + P+ Y K Q DI MR ++ W++ LA+NY+DRFL+ +
Sbjct: 178 EMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSM 236
Query: 555 PTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNL 734
+ LQL+G M LASK +E P + TD++ +++L E +VL L ++L
Sbjct: 237 SVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDL 296
Query: 735 AAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAA- 911
AA T + F+ L N K+ + + A + Y PS+IA + A
Sbjct: 297 AAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDAD--PYLKYLPSLIAGAAFHLAL 354
Query: 912 --ICGLQPDEDVSSLTGDALVDL 974
+ G E ++ TG L L
Sbjct: 355 YTVTGQSWPESLAQQTGYTLESL 377
>ref|NP_001032211.1| G1/S-specific cyclin-E2 isoform 1 [Mus musculus].
Length = 404
Score = 76.6 bits (187), Expect = 3e-14
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 2/175 (1%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+PD + V QN+L E RY+ +F+ + D++P MR ++ W+L
Sbjct: 102 LPDLSWACSQEVWQNMLQKENRYVHD-KHFQVLHSDLEPQMRSILLDWLLEVCEVYTLHR 160
Query: 504 XXFPLAINYLDRF-LAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DRF L K LQL+G +F+ASKL+E ++ TD +
Sbjct: 161 ETFYLAQDFFDRFMLTQKDVNKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSE 220
Query: 681 QELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQ-TFIAL 842
++L+ EL +L LKW L VT ++ L+ + L+ +++Q TFI +
Sbjct: 221 VDILKMELNILKALKWELCPVTVISWLNLFLQVDAVKDVPKVLLPQYSQETFIQI 275
>ref|NP_033960.1| G1/S-specific cyclin-E2 isoform 2 [Mus musculus].
Length = 403
Score = 76.6 bits (187), Expect = 3e-14
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 2/175 (1%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+PD + V QN+L E RY+ +F+ + D++P MR ++ W+L
Sbjct: 101 LPDLSWACSQEVWQNMLQKENRYVHD-KHFQVLHSDLEPQMRSILLDWLLEVCEVYTLHR 159
Query: 504 XXFPLAINYLDRF-LAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DRF L K LQL+G +F+ASKL+E ++ TD +
Sbjct: 160 ETFYLAQDFFDRFMLTQKDVNKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSE 219
Query: 681 QELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQ-TFIAL 842
++L+ EL +L LKW L VT ++ L+ + L+ +++Q TFI +
Sbjct: 220 VDILKMELNILKALKWELCPVTVISWLNLFLQVDAVKDVPKVLLPQYSQETFIQI 274
>ref|NP_031654.2| cyclin-A1 [Mus musculus].
Length = 421
Score = 69.3 bits (168), Expect = 4e-12
Identities = 50/183 (27%), Positives = 89/183 (48%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + + L E R+ P+ Y + Q DI MR ++ W++ LA+N+
Sbjct: 169 EEIHRYLREAEVRHRPKAHYMR-KQPDITEGMRAILVDWLVEVGEEYKLRTETLYLAVNF 227
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G + LASK +E P ++ TD++ ++LL E ++
Sbjct: 228 LDRFLSCMSVLRGKLQLVGTAAILLASKYEEIYPPDVDEFVYITDDTYTKRQLLRMEHLL 287
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L ++L T + F+ LR+ +L + A+ ++L D F Y PS++A
Sbjct: 288 LKVLAFDLTVPTTNQFLLQYLRRQGVCIRTENLAKYVAE--LSLLEAD-PFLKYLPSLVA 344
Query: 891 TGS 899
+
Sbjct: 345 AAA 347
>ref|NP_001074531.1| cyclin-O [Mus musculus].
Length = 352
Score = 68.6 bits (166), Expect = 7e-12
Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 8/194 (4%)
Frame = +3
Query: 423 QKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMF 602
Q + R + +W+L L +N LDRFL P QLLG C+
Sbjct: 127 QPQVTAESRCKLLSWLLQVHRQFGLSFESLCLTVNTLDRFLLTTPVAADCFQLLGVTCLL 186
Query: 603 LASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKL 782
+A K E P ++L + Q+L E +VL KL ++L A T + F+EH +
Sbjct: 187 IACKQVEVHPPRLKQLLALCGGAFSRQQLCNLECIVLHKLHFSLGAPTINFFLEHFTQWR 246
Query: 783 PQPNEKLSLIRKHAQTF----IALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSL 950
+ + AQT L TD+ F Y PS++A + A LQ ++
Sbjct: 247 MEAGQAEVTEALEAQTLARGVAELSLTDYAFTTYTPSLMAICCLALADGLLQHQHEMDLR 306
Query: 951 TGD----ALVDLLG 980
G+ L D LG
Sbjct: 307 LGEHPEATLQDCLG 320
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,888,389
Number of extensions: 705647
Number of successful extensions: 3031
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3012
Number of HSP's successfully gapped: 19
Length of query: 327
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,553,887
Effective search space: 2824624575
Effective search space used: 2824624575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008170
(981 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001750.1| G1/S-specific cyclin-D2 [Homo sapiens]. 409 e-114
Alignment gi|NP_001751.1| G1/S-specific cyclin-D3 isoform 2 [Homo sapiens]. 283 1e-76
Alignment gi|NP_444284.1| G1/S-specific cyclin-D1 [Homo sapiens]. 281 8e-76
Alignment gi|NP_001129489.1| G1/S-specific cyclin-D3 isoform 1 [Homo sapi... 201 1e-51
Alignment gi|NP_001129597.1| G1/S-specific cyclin-D3 isoform 3 [Homo sapi... 121 8e-28
Alignment gi|NP_477097.1| G1/S-specific cyclin-E2 [Homo sapiens]. 75 7e-14
Alignment gi|NP_001104517.1| cyclin-A1 isoform c [Homo sapiens]. 75 9e-14
Alignment gi|NP_001104516.1| cyclin-A1 isoform c [Homo sapiens]. 75 9e-14
Alignment gi|NP_001104515.1| cyclin-A1 isoform b [Homo sapiens]. 75 9e-14
Alignment gi|NP_003905.1| cyclin-A1 isoform a [Homo sapiens]. 75 9e-14
>ref|NP_001750.1| G1/S-specific cyclin-D2 [Homo sapiens].
Length = 289
Score = 409 bits (1052), Expect = e-114
Identities = 206/232 (88%), Positives = 210/232 (90%)
Frame = +3
Query: 282 MELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 461
MELLC EVDPVRRAV D NLL DDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA
Sbjct: 1 MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA 60
Query: 462 TWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTA 641
TWML FPLA+NYLDRFLAGVPTPK+HLQLLGAVCMFLASKLKET PLTA
Sbjct: 61 TWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTA 120
Query: 642 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKH 821
EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQ EKLSLIRKH
Sbjct: 121 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKH 180
Query: 822 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQ DE+VSSLT DAL +LL
Sbjct: 181 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELL 232
>ref|NP_001751.1| G1/S-specific cyclin-D3 isoform 2 [Homo sapiens].
Length = 292
Score = 283 bits (725), Expect = 1e-76
Identities = 140/233 (60%), Positives = 178/233 (76%), Gaps = 1/233 (0%)
Frame = +3
Query: 282 MELLCCE-VDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 458
MELLCCE RA PD LL D RVLQ+LL +EERY+P+ SYF+CVQ++I+P+MR+M+
Sbjct: 1 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML 60
Query: 459 ATWMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLT 638
A WML FPLA+NYLDR+L+ VPT K LQLLGAVCM LASKL+ET PLT
Sbjct: 61 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT 120
Query: 639 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRK 818
EKLCIYTD+++ P++L +WE++VLGKLKW+LAAV HDF+ IL +L P ++ +L++K
Sbjct: 121 IEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKK 180
Query: 819 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
HAQTF+ALCATD+ FAMYPPSMIATGS+GAA+ GL S++GD L +LL
Sbjct: 181 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGL----GACSMSGDELTELL 229
>ref|NP_444284.1| G1/S-specific cyclin-D1 [Homo sapiens].
Length = 295
Score = 281 bits (718), Expect = 8e-76
Identities = 138/213 (64%), Positives = 166/213 (77%)
Frame = +3
Query: 285 ELLCCEVDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVAT 464
+LLCCEV+ +RRA PDANLL+D RVL+ +L EE P SYFKCVQK++ P MR++VAT
Sbjct: 4 QLLCCEVETIRRAYPDANLLND-RVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVAT 62
Query: 465 WMLXXXXXXXXXXXXFPLAINYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAE 644
WML FPLA+NYLDRFL+ P K+ LQLLGA CMF+ASK+KETIPLTAE
Sbjct: 63 WMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAE 122
Query: 645 KLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHA 824
KLCIYTDNSI+P+ELL+ EL+++ KLKWNLAA+TPHDFIEH L K+P+ E +IRKHA
Sbjct: 123 KLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHA 182
Query: 825 QTFIALCATDFKFAMYPPSMIATGSVGAAICGL 923
QTF+ALCATD KF PPSM+A GSV AA+ GL
Sbjct: 183 QTFVALCATDVKFISNPPSMVAAGSVVAAVQGL 215
>ref|NP_001129489.1| G1/S-specific cyclin-D3 isoform 1 [Homo sapiens].
Length = 211
Score = 201 bits (510), Expect = 1e-51
Identities = 96/152 (63%), Positives = 123/152 (80%)
Frame = +3
Query: 522 INYLDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWE 701
+NYLDR+L+ VPT K LQLLGAVCM LASKL+ET PLT EKLCIYTD+++ P++L +WE
Sbjct: 1 MNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWE 60
Query: 702 LVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPS 881
++VLGKLKW+LAAV HDF+ IL +L P ++ +L++KHAQTF+ALCATD+ FAMYPPS
Sbjct: 61 VLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPS 120
Query: 882 MIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
MIATGS+GAA+ GL S++GD L +LL
Sbjct: 121 MIATGSIGAAVQGL----GACSMSGDELTELL 148
>ref|NP_001129597.1| G1/S-specific cyclin-D3 isoform 3 [Homo sapiens].
Length = 220
Score = 121 bits (304), Expect = 8e-28
Identities = 58/97 (59%), Positives = 76/97 (78%)
Frame = +3
Query: 687 LLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFA 866
L +WE++VLGKLKW+LAAV HDF+ IL +L P ++ +L++KHAQTF+ALCATD+ FA
Sbjct: 65 LEDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFA 124
Query: 867 MYPPSMIATGSVGAAICGLQPDEDVSSLTGDALVDLL 977
MYPPSMIATGS+GAA+ GL S++GD L +LL
Sbjct: 125 MYPPSMIATGSIGAAVQGL----GACSMSGDELTELL 157
Score = 84.3 bits (207), Expect = 2e-16
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = +3
Query: 282 MELLCCE-VDPVRRAVPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV 458
MELLCCE RA PD LL D RVLQ+LL +EERY+P+ SYF+CVQ++I+P+MR+M+
Sbjct: 1 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML 60
Query: 459 ATWMLXXXXXXXXXXXXFPLAINYLDRFLA 548
A WML + LA FLA
Sbjct: 61 AYWMLEDWEVLVLGKLKWDLAAVIAHDFLA 90
>ref|NP_477097.1| G1/S-specific cyclin-E2 [Homo sapiens].
Length = 404
Score = 75.5 bits (184), Expect = 7e-14
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 2/175 (1%)
Frame = +3
Query: 324 VPDANLLHDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXX 503
+PD + V N+L E RY+ +F+ + D++P MR ++ W+L
Sbjct: 102 LPDLSWGCSKEVWLNMLKKESRYVHD-KHFEVLHSDLEPQMRSILLDWLLEVCEVYTLHR 160
Query: 504 XXFPLAINYLDRF-LAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKP 680
F LA ++ DRF L K LQL+G +F+ASKL+E ++ TD +
Sbjct: 161 ETFYLAQDFFDRFMLTQKDINKNMLQLIGITSLFIASKLEEIYAPKLQEFAYVTDGACSE 220
Query: 681 QELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQ-TFIAL 842
+++L EL++L LKW L VT ++ L+ + L+ +++Q TFI +
Sbjct: 221 EDILRMELIILKALKWELCPVTIISWLNLFLQVDALKDAPKVLLPQYSQETFIQI 275
>ref|NP_001104517.1| cyclin-A1 isoform c [Homo sapiens].
Length = 421
Score = 75.1 bits (183), Expect = 9e-14
Identities = 57/189 (30%), Positives = 92/189 (48%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E R+ P+ Y K Q DI MR ++ W++ LA+N+
Sbjct: 169 EEIYQYLREAEIRHRPKAHYMK-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 227
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G M LASK +E P ++ TD++ ++LL+ E ++
Sbjct: 228 LDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLL 287
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L ++L T + F+ LR+ +L + A+ ++L D F Y PS+IA
Sbjct: 288 LKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 344
Query: 891 TGSVGAAIC 917
AA C
Sbjct: 345 ----AAAFC 349
>ref|NP_001104516.1| cyclin-A1 isoform c [Homo sapiens].
Length = 421
Score = 75.1 bits (183), Expect = 9e-14
Identities = 57/189 (30%), Positives = 92/189 (48%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E R+ P+ Y K Q DI MR ++ W++ LA+N+
Sbjct: 169 EEIYQYLREAEIRHRPKAHYMK-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 227
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G M LASK +E P ++ TD++ ++LL+ E ++
Sbjct: 228 LDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLL 287
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L ++L T + F+ LR+ +L + A+ ++L D F Y PS+IA
Sbjct: 288 LKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 344
Query: 891 TGSVGAAIC 917
AA C
Sbjct: 345 ----AAAFC 349
>ref|NP_001104515.1| cyclin-A1 isoform b [Homo sapiens].
Length = 464
Score = 75.1 bits (183), Expect = 9e-14
Identities = 57/189 (30%), Positives = 92/189 (48%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E R+ P+ Y K Q DI MR ++ W++ LA+N+
Sbjct: 212 EEIYQYLREAEIRHRPKAHYMK-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 270
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G M LASK +E P ++ TD++ ++LL+ E ++
Sbjct: 271 LDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLL 330
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L ++L T + F+ LR+ +L + A+ ++L D F Y PS+IA
Sbjct: 331 LKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 387
Query: 891 TGSVGAAIC 917
AA C
Sbjct: 388 ----AAAFC 392
>ref|NP_003905.1| cyclin-A1 isoform a [Homo sapiens].
Length = 465
Score = 75.1 bits (183), Expect = 9e-14
Identities = 57/189 (30%), Positives = 92/189 (48%)
Frame = +3
Query: 351 DRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVATWMLXXXXXXXXXXXXFPLAINY 530
+ + Q L E R+ P+ Y K Q DI MR ++ W++ LA+N+
Sbjct: 213 EEIYQYLREAEIRHRPKAHYMK-KQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNF 271
Query: 531 LDRFLAGVPTPKTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIKPQELLEWELVV 710
LDRFL+ + + LQL+G M LASK +E P ++ TD++ ++LL+ E ++
Sbjct: 272 LDRFLSCMSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLL 331
Query: 711 LGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIA 890
L L ++L T + F+ LR+ +L + A+ ++L D F Y PS+IA
Sbjct: 332 LKVLAFDLTVPTTNQFLLQYLRRQGVCVRTENLAKYVAE--LSLLEAD-PFLKYLPSLIA 388
Query: 891 TGSVGAAIC 917
AA C
Sbjct: 389 ----AAAFC 393
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,293,302
Number of extensions: 849263
Number of successful extensions: 3779
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3765
Number of HSP's successfully gapped: 22
Length of query: 327
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,901,872
Effective search space: 3338019328
Effective search space used: 3338019328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008170
(981 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 319 2e-84
Sscrofa_Chr02 90 3e-15
>Sscrofa_Chr05
|| Length = 111506441
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 692 ggagtgggagctggtggtgctgggcaagttgaagtggaacctggcggctgtcacccccca 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68331944 ggagtgggagctggtggtgctgggcaagttgaagtggaacctggcggctgtcacccccca 68331885
Query: 752 cgacttcatcgagcacattcttcgcaagctgcctcagcccaatgagaagctgtctctgat 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68331884 cgacttcatcgagcacattcttcgcaagctgcctcagcccaatgagaagctgtctctgat 68331825
Query: 812 tcgcaagcacgcgcagactttcatcgctctgtgcgccactg 852
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 68331824 tcgcaagcacgcgcagactttcatcgctctgtgcgccactg 68331784
Score = 236 bits (119), Expect = 2e-59
Identities = 125/127 (98%)
Strand = Plus / Minus
Query: 852 gacttcaagttcgccatgtacccgccgtcgatgattgcaactggaagtgtgggggccgcc 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68323897 gacttcaagttcgccatgtacccgccgtcgatgattgcaactggaagtgtgggggccgcc 68323838
Query: 912 atctgcgggctccagccagacgaggacgtgagctcgctcacgggtgacgccctggtggac 971
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68323837 atctgcgggctccagcaggacgaggacgtgagctcgctcacgggtgacgccctggtggac 68323778
Query: 972 ctgctgg 978
|||||||
Sbjct: 68323777 ctgctgg 68323771
>Sscrofa_Chr02
|| Length = 162569375
Score = 89.7 bits (45), Expect = 3e-15
Identities = 166/204 (81%), Gaps = 8/204 (3%)
Strand = Plus / Plus
Query: 475 aggtctgtgaggagcagaagtgtgaagaagaggtcttccctctggccatcaattacctgg 534
||||||| |||||||||||||| || || ||||||||||| |||||||| || |||||||
Sbjct: 2342274 aggtctgcgaggagcagaagtgcgaggaggaggtcttcccgctggccatgaactacctgg 2342333
Query: 535 accgcttcttggcc--ggagtccc--aactccgaagacccatctgcagcttctgggggcc 590
|||||||| || || |||| || || |||| || |||||||| ||||| |||
Sbjct: 2342334 accgcttcctgtccctggagcccgtgaaa----aagagccgcctgcagctgctgggagcc 2342389
Query: 591 gtgtgcatgttcctggcgtccaagctcaaagagaccattccgctgacggctgagaagttg 650
||||||||| |||| || ||| | || |||||||| || |||||||| |||||||||
Sbjct: 2342390 acctgcatgttcgtggcctcgaagatgaaggagaccatccccctgacggccgagaagttg 2342449
Query: 651 tgcatttacaccgacaactccatc 674
||||| ||||||||||||||||||
Sbjct: 2342450 tgcatctacaccgacaactccatc 2342473
Score = 58.0 bits (29), Expect = 9e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 723 aagtggaacctggcggctgtcaccccccacgacttcatcgagcac 767
||||||||||||||||| | ||||| ||||||||||||||||||
Sbjct: 2343065 aagtggaacctggcggccatgaccccgcacgacttcatcgagcac 2343109
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,145,022
Number of extensions: 202
Number of successful extensions: 202
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 5
Length of query: 981
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 960
Effective length of database: 2,808,413,156
Effective search space: 2696076629760
Effective search space used: 2696076629760
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)