Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008172
(1029 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002693096.1| PREDICTED: TEA domain family member 1 (SV40 ... 154 9e-38
Alignment gi|XP_616694.5| PREDICTED: TEA domain family member 1 [Bos taur... 154 9e-38
Alignment gi|XP_002687928.1| PREDICTED: TEA domain family member 4-like, ... 152 4e-37
Alignment gi|XP_605145.3| PREDICTED: TEA domain family member 4-like [Bos... 152 4e-37
Alignment gi|XP_002697256.1| PREDICTED: TEA domain family member 3 [Bos t... 151 1e-36
Alignment gi|XP_591149.4| PREDICTED: TEA domain family member 3 [Bos taur... 140 1e-33
Alignment gi|NP_001096817.1| transcriptional enhancer factor TEF-4 [Bos t... 136 3e-32
>ref|XP_002693096.1| PREDICTED: TEA domain family member 1 (SV40 transcriptional
enhancer factor) [Bos taurus].
Length = 411
Score = 154 bits (390), Expect = 9e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|XP_616694.5| PREDICTED: TEA domain family member 1 [Bos taurus].
Length = 411
Score = 154 bits (390), Expect = 9e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|XP_002687928.1| PREDICTED: TEA domain family member 4-like, partial [Bos taurus].
Length = 476
Score = 152 bits (385), Expect = 4e-37
Identities = 77/102 (75%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Frame = +2
Query: 455 PGFGLENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALA 631
P LE A I + W SP N+ S + DKPIDNDAEGVWSPDIEQSFQEALA
Sbjct: 39 PSGALEGKAGTITSNEWGSPNSPEGSNVSGGSQALDKPIDNDAEGVWSPDIEQSFQEALA 98
Query: 632 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 99 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 140
>ref|XP_605145.3| PREDICTED: TEA domain family member 4-like [Bos taurus].
Length = 579
Score = 152 bits (385), Expect = 4e-37
Identities = 77/102 (75%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Frame = +2
Query: 455 PGFGLENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALA 631
P LE A I + W SP N+ S + DKPIDNDAEGVWSPDIEQSFQEALA
Sbjct: 142 PSGALEGKAGTITSNEWGSPNSPEGSNVSGGSQALDKPIDNDAEGVWSPDIEQSFQEALA 201
Query: 632 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 202 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 243
>ref|XP_002697256.1| PREDICTED: TEA domain family member 3 [Bos taurus].
Length = 530
Score = 151 bits (381), Expect = 1e-36
Identities = 84/129 (65%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Frame = +2
Query: 374 EAAPKFASDSPGAAAAPFAEVYFLEKAPGFGLENPAAK-IEPSSWSGSESPAENMERMSD 550
EA +ASDS G G G E A I +SW+ S SP E E +
Sbjct: 70 EALHTWASDSSGCPV-------------GSGPEPRATSTIASNSWNASSSPGEAREDGPE 116
Query: 551 SADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT 730
DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT
Sbjct: 117 GLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT 176
Query: 731 GKTRTRKQV 757
GKTRTRKQV
Sbjct: 177 GKTRTRKQV 185
>ref|XP_591149.4| PREDICTED: TEA domain family member 3 [Bos taurus].
Length = 530
Score = 140 bits (354), Expect = 1e-33
Identities = 79/129 (61%), Positives = 85/129 (65%), Gaps = 1/129 (0%)
Frame = +2
Query: 374 EAAPKFASDSPGAAAAPFAEVYFLEKAPGFGLENPAAK-IEPSSWSGSESPAENMERMSD 550
EA +ASDS G G G E A I +SW+ S SP E E +
Sbjct: 70 EALHTWASDSSGCPV-------------GSGPEPRATSTIASNSWNASSSPGEAREDGPE 116
Query: 551 SADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT 730
DK +DNDAEGVW PDIEQSFQEALAIYPPCGR KIIL +EGK YGRNELIARYIKLRT
Sbjct: 117 GLDKGLDNDAEGVWKPDIEQSFQEALAIYPPCGRPKIILLEEGKKYGRNELIARYIKLRT 176
Query: 731 GKTRTRKQV 757
GKTRTRKQV
Sbjct: 177 GKTRTRKQV 185
>ref|NP_001096817.1| transcriptional enhancer factor TEF-4 [Bos taurus].
Length = 451
Score = 136 bits (343), Expect = 3e-32
Identities = 69/87 (79%), Positives = 72/87 (82%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQV 100
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,730,258
Number of extensions: 1018166
Number of successful extensions: 3580
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3564
Number of HSP's successfully gapped: 7
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008172
(1029 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864365.1| PREDICTED: similar to TEA domain family member ... 154 1e-37
Alignment gi|XP_851750.1| PREDICTED: similar to TEA domain family member ... 154 1e-37
Alignment gi|XP_864320.1| PREDICTED: similar to TEA domain family member ... 154 1e-37
Alignment gi|XP_854634.1| PREDICTED: similar to TEA domain family member ... 153 2e-37
Alignment gi|XP_538879.2| PREDICTED: similar to Transcriptional enhancer ... 149 3e-36
Alignment gi|XP_864561.1| PREDICTED: similar to TEA domain family member ... 136 3e-32
Alignment gi|XP_851860.1| PREDICTED: similar to TEA domain family member ... 136 3e-32
Alignment gi|XP_864508.1| PREDICTED: similar to TEA domain family member ... 136 3e-32
Alignment gi|XP_864491.1| PREDICTED: similar to TEA domain family member ... 136 3e-32
Alignment gi|XP_864473.1| PREDICTED: similar to TEA domain family member ... 136 3e-32
>ref|XP_864365.1| PREDICTED: similar to TEA domain family member 1 isoform 3 [Canis
familiaris].
Length = 415
Score = 154 bits (390), Expect = 1e-37
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|XP_851750.1| PREDICTED: similar to TEA domain family member 1 isoform 1 [Canis
familiaris].
Length = 428
Score = 154 bits (390), Expect = 1e-37
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|XP_864320.1| PREDICTED: similar to TEA domain family member 1 isoform 2 [Canis
familiaris].
Length = 411
Score = 154 bits (390), Expect = 1e-37
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|XP_854634.1| PREDICTED: similar to TEA domain family member 4 isoform 1 [Canis
familiaris].
Length = 546
Score = 153 bits (387), Expect = 2e-37
Identities = 78/102 (76%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Frame = +2
Query: 455 PGFGLENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALA 631
P LE A I + WS SP N+ S + DKPIDNDAEGVWSPDIEQSFQEALA
Sbjct: 109 PSGALEGKAGTITSNEWSPPNSPEGSNVSGGSQALDKPIDNDAEGVWSPDIEQSFQEALA 168
Query: 632 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 169 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 210
>ref|XP_538879.2| PREDICTED: similar to Transcriptional enhancer factor TEF-5 (TEA
domain family member 3) (TEAD-3) (DTEF-1) [Canis
familiaris].
Length = 920
Score = 149 bits (377), Expect = 3e-36
Identities = 73/90 (81%), Positives = 77/90 (85%)
Frame = +2
Query: 488 IEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 667
I +SW+ S SP E E + DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL
Sbjct: 465 IASNSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 524
Query: 668 SDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
SDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 525 SDEGKMYGRNELIARYIKLRTGKTRTRKQV 554
>ref|XP_864561.1| PREDICTED: similar to TEA domain family member 2 isoform 13 [Canis
familiaris].
Length = 404
Score = 136 bits (343), Expect = 3e-32
Identities = 69/87 (79%), Positives = 72/87 (82%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQV 100
>ref|XP_851860.1| PREDICTED: similar to TEA domain family member 2 isoform 2 [Canis
familiaris].
Length = 446
Score = 136 bits (343), Expect = 3e-32
Identities = 69/87 (79%), Positives = 72/87 (82%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQV 100
>ref|XP_864508.1| PREDICTED: similar to TEA domain family member 2 isoform 12 [Canis
familiaris].
Length = 456
Score = 136 bits (343), Expect = 3e-32
Identities = 69/87 (79%), Positives = 72/87 (82%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQV 100
>ref|XP_864491.1| PREDICTED: similar to TEA domain family member 2 isoform 11 [Canis
familiaris].
Length = 458
Score = 136 bits (343), Expect = 3e-32
Identities = 69/87 (79%), Positives = 72/87 (82%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQV 100
>ref|XP_864473.1| PREDICTED: similar to TEA domain family member 2 isoform 10 [Canis
familiaris].
Length = 426
Score = 136 bits (343), Expect = 3e-32
Identities = 69/87 (79%), Positives = 72/87 (82%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQV 100
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,895,044
Number of extensions: 993078
Number of successful extensions: 3527
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3520
Number of HSP's successfully gapped: 19
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008172
(1029 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136141.1| transcriptional enhancer factor 1 [Sus scrof... 154 6e-38
Alignment gi|NP_001136138.1| TEA domain family member 4 [Sus scrofa]. 152 4e-37
Alignment gi|XP_001926998.3| PREDICTED: transcriptional enhancer factor T... 149 2e-36
Alignment gi|NP_001033055.1| transcription enhancer factor 5 [Sus scrofa]. 149 3e-36
Alignment gi|XP_003362097.1| PREDICTED: transcriptional enhancer factor T... 132 2e-31
>ref|NP_001136141.1| transcriptional enhancer factor 1 [Sus scrofa].
Length = 436
Score = 154 bits (390), Expect = 6e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|NP_001136138.1| TEA domain family member 4 [Sus scrofa].
Length = 434
Score = 152 bits (383), Expect = 4e-37
Identities = 76/98 (77%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Frame = +2
Query: 467 LENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPP 643
+E A I + WS SP N+ S + DKPIDNDAEGVWSPDIEQSFQEALAIYPP
Sbjct: 1 MEGKAGTITSNEWSSPNSPEGSNVSGGSQALDKPIDNDAEGVWSPDIEQSFQEALAIYPP 60
Query: 644 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 61 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 98
>ref|XP_001926998.3| PREDICTED: transcriptional enhancer factor TEF-5-like [Sus scrofa].
Length = 406
Score = 149 bits (377), Expect = 2e-36
Identities = 73/90 (81%), Positives = 77/90 (85%)
Frame = +2
Query: 488 IEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 667
I +SW+ S SP E E + DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL
Sbjct: 42 IASNSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 101
Query: 668 SDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
SDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 102 SDEGKMYGRNELIARYIKLRTGKTRTRKQV 131
>ref|NP_001033055.1| transcription enhancer factor 5 [Sus scrofa].
Length = 435
Score = 149 bits (375), Expect = 3e-36
Identities = 72/87 (82%), Positives = 76/87 (87%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
+SW+ S SP E E + DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 4 NSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 63
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 64 GKMYGRNELIARYIKLRTGKTRTRKQV 90
>ref|XP_003362097.1| PREDICTED: transcriptional enhancer factor TEF-4, partial [Sus
scrofa].
Length = 392
Score = 132 bits (333), Expect = 2e-31
Identities = 69/90 (76%), Positives = 71/90 (78%)
Frame = +2
Query: 509 GSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY 688
GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY
Sbjct: 1 GSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY 60
Query: 689 GRNELIARYIKLRTGKTRTRKQVK*PAWKL 778
GRNELIARYIKLRTGKTRTRKQV W L
Sbjct: 61 GRNELIARYIKLRTGKTRTRKQVSRLTWGL 90
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,249,812
Number of extensions: 739379
Number of successful extensions: 2259
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2247
Number of HSP's successfully gapped: 5
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008172
(1029 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160057.1| transcriptional enhancer factor TEF-1 isofor... 154 8e-38
Alignment gi|NP_001160056.1| transcriptional enhancer factor TEF-1 isofor... 154 8e-38
Alignment gi|NP_033372.1| transcriptional enhancer factor TEF-1 isoform 2... 154 8e-38
Alignment gi|NP_001091696.2| transcriptional enhancer factor TEF-5 isofor... 150 1e-36
Alignment gi|NP_001191085.1| transcriptional enhancer factor TEF-5 isofor... 149 3e-36
Alignment gi|NP_035696.3| transcriptional enhancer factor TEF-5 isoform 2... 149 3e-36
Alignment gi|NP_001074448.2| transcriptional enhancer factor TEF-3 isofor... 139 5e-33
Alignment gi|NP_035697.3| transcriptional enhancer factor TEF-3 isoform a... 139 5e-33
Alignment gi|NP_035695.1| transcriptional enhancer factor TEF-4 [Mus musc... 134 2e-31
>ref|NP_001160057.1| transcriptional enhancer factor TEF-1 isoform 3 [Mus musculus].
Length = 411
Score = 154 bits (390), Expect = 8e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|NP_001160056.1| transcriptional enhancer factor TEF-1 isoform 1 [Mus musculus].
Length = 436
Score = 154 bits (390), Expect = 8e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|NP_033372.1| transcriptional enhancer factor TEF-1 isoform 2 [Mus musculus].
Length = 415
Score = 154 bits (390), Expect = 8e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 533 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 712
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 713 YIKLRTGKTRTRKQV 757
YIKLRTGKTRTRKQV
Sbjct: 61 YIKLRTGKTRTRKQV 75
>ref|NP_001091696.2| transcriptional enhancer factor TEF-5 isoform 1 [Mus musculus].
Length = 465
Score = 150 bits (380), Expect = 1e-36
Identities = 77/101 (76%), Positives = 82/101 (81%), Gaps = 1/101 (0%)
Frame = +2
Query: 458 GFGLENPAAK-IEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAI 634
G G E A I +SW+ + SP E E S+ DK +DNDAEGVWSPDIEQSFQEALAI
Sbjct: 16 GSGPEPKATSTIASNSWTANSSPGEAREDGSEGLDKGLDNDAEGVWSPDIEQSFQEALAI 75
Query: 635 YPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
YPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 76 YPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 116
>ref|NP_001191085.1| transcriptional enhancer factor TEF-5 isoform 2 [Mus musculus].
Length = 439
Score = 149 bits (377), Expect = 3e-36
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
+SW+ + SP E E S+ DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 4 NSWTANSSPGEAREDGSEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 63
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 64 GKMYGRNELIARYIKLRTGKTRTRKQV 90
>ref|NP_035696.3| transcriptional enhancer factor TEF-5 isoform 2 [Mus musculus].
Length = 439
Score = 149 bits (377), Expect = 3e-36
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
+SW+ + SP E E S+ DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 4 NSWTANSSPGEAREDGSEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 63
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 64 GKMYGRNELIARYIKLRTGKTRTRKQV 90
>ref|NP_001074448.2| transcriptional enhancer factor TEF-3 isoform b [Mus musculus].
Length = 384
Score = 139 bits (349), Expect = 5e-33
Identities = 67/88 (76%), Positives = 77/88 (87%), Gaps = 1/88 (1%)
Frame = +2
Query: 497 SSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSD 673
+ WS +SP ++ S + DKPIDNDAEGVWSP+IE+SFQEALAIYPPCGRRKIIL++
Sbjct: 4 NEWSSPDSPEGSSISGGSQALDKPIDNDAEGVWSPEIERSFQEALAIYPPCGRRKIILTE 63
Query: 674 EGKMYGRNELIARYIKLRTGKTRTRKQV 757
EGKMYGRNELIAR+IKLRTGKTRTRKQV
Sbjct: 64 EGKMYGRNELIARHIKLRTGKTRTRKQV 91
>ref|NP_035697.3| transcriptional enhancer factor TEF-3 isoform a [Mus musculus].
Length = 427
Score = 139 bits (349), Expect = 5e-33
Identities = 67/88 (76%), Positives = 77/88 (87%), Gaps = 1/88 (1%)
Frame = +2
Query: 497 SSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSD 673
+ WS +SP ++ S + DKPIDNDAEGVWSP+IE+SFQEALAIYPPCGRRKIIL++
Sbjct: 4 NEWSSPDSPEGSSISGGSQALDKPIDNDAEGVWSPEIERSFQEALAIYPPCGRRKIILTE 63
Query: 674 EGKMYGRNELIARYIKLRTGKTRTRKQV 757
EGKMYGRNELIAR+IKLRTGKTRTRKQV
Sbjct: 64 EGKMYGRNELIARHIKLRTGKTRTRKQV 91
>ref|NP_035695.1| transcriptional enhancer factor TEF-4 [Mus musculus].
Length = 445
Score = 134 bits (336), Expect = 2e-31
Identities = 67/85 (78%), Positives = 70/85 (82%)
Frame = +2
Query: 503 WSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGK 682
W+GSE +E S+ DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGK
Sbjct: 16 WTGSEEGSEEGTGGSEGVGGDGSPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGK 75
Query: 683 MYGRNELIARYIKLRTGKTRTRKQV 757
MYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 76 MYGRNELIARYIKLRTGKTRTRKQV 100
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,329,130
Number of extensions: 806347
Number of successful extensions: 2652
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2645
Number of HSP's successfully gapped: 9
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008172
(1029 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068780.2| transcriptional enhancer factor TEF-1 [Homo sap... 184 1e-46
Alignment gi|NP_003205.2| transcriptional enhancer factor TEF-5 [Homo sap... 149 5e-36
Alignment gi|NP_958849.1| transcriptional enhancer factor TEF-3 isoform 2... 148 7e-36
Alignment gi|NP_003204.2| transcriptional enhancer factor TEF-3 isoform 1... 148 7e-36
Alignment gi|NP_003589.1| transcriptional enhancer factor TEF-4 [Homo sap... 137 1e-32
>ref|NP_068780.2| transcriptional enhancer factor TEF-1 [Homo sapiens].
Length = 426
Score = 184 bits (467), Expect = 1e-46
Identities = 89/90 (98%), Positives = 90/90 (100%)
Frame = +2
Query: 488 IEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 667
+EPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL
Sbjct: 1 MEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 60
Query: 668 SDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
SDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 61 SDEGKMYGRNELIARYIKLRTGKTRTRKQV 90
>ref|NP_003205.2| transcriptional enhancer factor TEF-5 [Homo sapiens].
Length = 435
Score = 149 bits (375), Expect = 5e-36
Identities = 72/87 (82%), Positives = 76/87 (87%)
Frame = +2
Query: 497 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 676
+SW+ S SP E E + DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 4 NSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 63
Query: 677 GKMYGRNELIARYIKLRTGKTRTRKQV 757
GKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 64 GKMYGRNELIARYIKLRTGKTRTRKQV 90
>ref|NP_958849.1| transcriptional enhancer factor TEF-3 isoform 2 [Homo sapiens].
Length = 391
Score = 148 bits (374), Expect = 7e-36
Identities = 75/98 (76%), Positives = 78/98 (79%), Gaps = 1/98 (1%)
Frame = +2
Query: 467 LENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPP 643
+E A I + WS SP S + DKPIDNDAEGVWSPDIEQSFQEALAIYPP
Sbjct: 1 MEGTAGTITSNEWSSPTSPEGSTASGGSQALDKPIDNDAEGVWSPDIEQSFQEALAIYPP 60
Query: 644 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 61 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 98
>ref|NP_003204.2| transcriptional enhancer factor TEF-3 isoform 1 [Homo sapiens].
Length = 434
Score = 148 bits (374), Expect = 7e-36
Identities = 75/98 (76%), Positives = 78/98 (79%), Gaps = 1/98 (1%)
Frame = +2
Query: 467 LENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPP 643
+E A I + WS SP S + DKPIDNDAEGVWSPDIEQSFQEALAIYPP
Sbjct: 1 MEGTAGTITSNEWSSPTSPEGSTASGGSQALDKPIDNDAEGVWSPDIEQSFQEALAIYPP 60
Query: 644 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 61 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 98
>ref|NP_003589.1| transcriptional enhancer factor TEF-4 [Homo sapiens].
Length = 447
Score = 137 bits (346), Expect = 1e-32
Identities = 71/93 (76%), Positives = 75/93 (80%)
Frame = +2
Query: 479 AAKIEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRK 658
AA + S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRK
Sbjct: 8 AALDDGSGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRK 67
Query: 659 IILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 757
IILSDEGKMYGRNELIARYIKLRTGKTRTRKQV
Sbjct: 68 IILSDEGKMYGRNELIARYIKLRTGKTRTRKQV 100
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,115,245
Number of extensions: 968784
Number of successful extensions: 3687
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3669
Number of HSP's successfully gapped: 5
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008172
(1029 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 670 0.0
gb|GL896292.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 90 3e-15
Sscrofa_Chr05 90 3e-15
>Sscrofa_Chr02
|| Length = 162569375
Score = 670 bits (338), Expect = 0.0
Identities = 340/341 (99%)
Strand = Plus / Minus
Query: 689 ggtaggaatgaattaatagccagatacatcaaactcaggacagggaagacgaggaccaga 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49912044 ggtaggaatgaattaatagccagatacatcaaactcaggacagggaagacgaggaccaga 49911985
Query: 749 aaacaggtaaaataacctgcctggaaactgtgcatgtcagcgaatggcccaaaagggcat 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49911984 aaacaggtaaaataacctgcctggaaactgtgcatgtcagcgaatggcccaaaagggcat 49911925
Query: 809 tttggctgcagtggctgtctgtgctttggctcctaggagcccccaattggagttccctgt 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49911924 tttggctgcagtggctgtctgtgctttggctcctaggagcccccaattggagttccctgt 49911865
Query: 869 aaggacgtcactgttatagatgtttgaaattggctcagttttcactgttcatcatttcag 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49911864 aaggacgtcactgttatagatgtttgaaattggctcagttttcactgttcatcatttcag 49911805
Query: 929 tgaccctttattatgtggtccagagttccttctacacacaaatgggaaagtgtcgctgct 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49911804 tgaccctttattatgtggtccagagttccttctacacacaaatgggaaagtgtcgctgct 49911745
Query: 989 tangacagtgtatgaactgctcctgtactgtattgtaaaac 1029
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 49911744 taggacagtgtatgaactgctcctgtactgtattgtaaaac 49911704
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Minus
Query: 432 aggtttattttcttgaaaaggctccaggcttcggcttggaaaatccggccgccaaaattg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50007345 aggtttattttcttgaaaaggctccaggcttcggcttggaaaatccggccgccaaaattg 50007286
Query: 492 agcccagcagctggagcggcagtgagagccctgccgaaaatatggaaaggatgagtgact 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50007285 agcccagcagctggagcggcagtgagagccctgccgaaaatatggaaaggatgagtgact 50007226
Query: 552 ctgcagataagcccattgacaatgatgcagaaggggtctggagccccgacattgagcaga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50007225 ctgcagataagcccattgacaatgatgcagaaggggtctggagccccgacattgagcaga 50007166
Query: 612 gctttcaggaagccttggctatctatccaccatgtgggaggaggaaaatcatcttatcag 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50007165 gctttcaggaagccttggctatctatccaccatgtgggaggaggaaaatcatcttatcag 50007106
Query: 672 atgaaggcaagatgtatggta 692
|||||||||||||||||||||
Sbjct: 50007105 atgaaggcaagatgtatggta 50007085
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1 atttcattcctgtcctcattccgaacattcttagcatcgctcgcgccttgccgcgccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50101222 atttcattcctgtcctcattccgaacattcttagcatcgctcgcgccttgccgcgccgcc 50101163
Query: 61 cgagccgagccgagcctctgca 82
||||||||||||||||||||||
Sbjct: 50101162 cgagccgagccgagcctctgca 50101141
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 120 accaagcactttgcagactcgcttccaccctgcgggccagt 160
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 50101103 accaagcactttgcagactcgcttccaccctgcgggccagt 50101063
Score = 63.9 bits (32), Expect = 2e-07
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 198 ggggacaggccatgcagtgaagnnnnnnnaccccgtccacctttgcccggagc 250
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 50101025 ggggacaggccatgcagtgaagcccccccaccccgtccacctttgcccggagc 50100973
>gb|GL896292.1| Sus scrofa unplaced genomic scaffold chrU_scaffold647
Length = 15493
Score = 89.7 bits (45), Expect = 3e-15
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 587 gtctggagccccgacattgagcagagctttcaggaagccttggctatctatccaccatgt 646
|||||||| || ||||| ||||||||||| ||||| ||| |||| ||||| ||||| |||
Sbjct: 13090 gtctggagtccagacatcgagcagagcttccaggaggccctggccatctacccaccctgt 13031
Query: 647 gggaggaggaaaatcatcttatcagatgaaggcaagatgtatggt 691
|| || ||||||||||| | || |||||||||||||||||||||
Sbjct: 13030 ggtcggcggaaaatcatcctgtcggatgaaggcaagatgtatggt 12986
>Sscrofa_Chr05
|| Length = 111506441
Score = 89.7 bits (45), Expect = 3e-15
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 560 aagcccattgacaatgatgcagaaggggtctggagccccgacattgagcagagctttcag 619
||||||||||||||||| ||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 69455231 aagcccattgacaatgacgcagagggcgtgtggagccccgacatcgagcagagcttccag 69455172
Query: 620 gaagccttggctatctatccaccatgtgggaggaggaaaatcatcttatcagatgaaggc 679
|| ||| |||| ||||| || || || || || | || |||||| |||| ||||| |||
Sbjct: 69455171 gaggccctggccatctacccgccctgcggtcggcgcaagatcatcctatcggatgagggc 69455112
Query: 680 aagatgtatggta 692
|||||||| ||||
Sbjct: 69455111 aagatgtacggta 69455099
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,465,907
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 7
Length of query: 1029
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1008
Effective length of database: 2,808,413,156
Effective search space: 2830880461248
Effective search space used: 2830880461248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)