Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008173
(921 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002693096.1| PREDICTED: TEA domain family member 1 (SV40 ... 269 3e-72
Alignment gi|XP_616694.5| PREDICTED: TEA domain family member 1 [Bos taur... 269 3e-72
Alignment gi|XP_002687928.1| PREDICTED: TEA domain family member 4-like, ... 226 2e-59
Alignment gi|XP_605145.3| PREDICTED: TEA domain family member 4-like [Bos... 226 2e-59
Alignment gi|XP_002697256.1| PREDICTED: TEA domain family member 3 [Bos t... 209 3e-54
Alignment gi|XP_591149.4| PREDICTED: TEA domain family member 3 [Bos taur... 199 4e-51
Alignment gi|NP_001096817.1| transcriptional enhancer factor TEF-4 [Bos t... 198 5e-51
>ref|XP_002693096.1| PREDICTED: TEA domain family member 1 (SV40 transcriptional
enhancer factor) [Bos taurus].
Length = 411
Score = 269 bits (687), Expect = 3e-72
Identities = 134/135 (99%), Positives = 135/135 (100%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 875
YIKLRTGKTRTRKQVSSHIQVLA+RKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 120
Query: 876 IHNKLGLPGIPRPTF 920
IHNKLGLPGIPRPTF
Sbjct: 121 IHNKLGLPGIPRPTF 135
>ref|XP_616694.5| PREDICTED: TEA domain family member 1 [Bos taurus].
Length = 411
Score = 269 bits (687), Expect = 3e-72
Identities = 134/135 (99%), Positives = 135/135 (100%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 875
YIKLRTGKTRTRKQVSSHIQVLA+RKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 120
Query: 876 IHNKLGLPGIPRPTF 920
IHNKLGLPGIPRPTF
Sbjct: 121 IHNKLGLPGIPRPTF 135
>ref|XP_002687928.1| PREDICTED: TEA domain family member 4-like, partial [Bos taurus].
Length = 476
Score = 226 bits (577), Expect = 2e-59
Identities = 118/161 (73%), Positives = 128/161 (79%), Gaps = 4/161 (2%)
Frame = +3
Query: 438 PGFGLENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALA 614
P LE A I + W SP N+ S + DKPIDNDAEGVWSPDIEQSFQEALA
Sbjct: 39 PSGALEGKAGTITSNEWGSPNSPEGSNVSGGSQALDKPIDNDAEGVWSPDIEQSFQEALA 98
Query: 615 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSK 794
IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RK+R+ +K
Sbjct: 99 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKAREIQAK 158
Query: 795 LKDQTAKDKALQHMAAMSSAQIVSATAIHNKLGL---PGIP 908
LKDQ AKDKALQ MAAMSSAQI+SA A H+K+ L PG P
Sbjct: 159 LKDQAAKDKALQSMAAMSSAQIISAAAFHSKMTLTRGPGYP 199
>ref|XP_605145.3| PREDICTED: TEA domain family member 4-like [Bos taurus].
Length = 579
Score = 226 bits (577), Expect = 2e-59
Identities = 118/161 (73%), Positives = 128/161 (79%), Gaps = 4/161 (2%)
Frame = +3
Query: 438 PGFGLENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALA 614
P LE A I + W SP N+ S + DKPIDNDAEGVWSPDIEQSFQEALA
Sbjct: 142 PSGALEGKAGTITSNEWGSPNSPEGSNVSGGSQALDKPIDNDAEGVWSPDIEQSFQEALA 201
Query: 615 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSK 794
IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RK+R+ +K
Sbjct: 202 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKAREIQAK 261
Query: 795 LKDQTAKDKALQHMAAMSSAQIVSATAIHNKLGL---PGIP 908
LKDQ AKDKALQ MAAMSSAQI+SA A H+K+ L PG P
Sbjct: 262 LKDQAAKDKALQSMAAMSSAQIISAAAFHSKMTLTRGPGYP 302
>ref|XP_002697256.1| PREDICTED: TEA domain family member 3 [Bos taurus].
Length = 530
Score = 209 bits (532), Expect = 3e-54
Identities = 119/194 (61%), Positives = 135/194 (69%), Gaps = 6/194 (3%)
Frame = +3
Query: 357 EAAPKFASDSPGAAAAPFAEVYFLEKAPGFGLENPAAK-IEPSSWSGSESPAENMERMSD 533
EA +ASDS G G G E A I +SW+ S SP E E +
Sbjct: 70 EALHTWASDSSGCPV-------------GSGPEPRATSTIASNSWNASSSPGEAREDGPE 116
Query: 534 SADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT 713
DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT
Sbjct: 117 GLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT 176
Query: 714 GKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKALQHMAAMSSAQIVSATAIH 881
GKTRTRKQVSSHIQVLA++K R++ +K DQ +KDKALQ MA+MSSAQIVSA+ +
Sbjct: 177 GKTRTRKQVSSHIQVLARKKVREYQVGIKAMNLDQVSKDKALQSMASMSSAQIVSASVLQ 236
Query: 882 NKLGLPG-IPRPTF 920
NK P +P+ F
Sbjct: 237 NKFSPPSPLPQAVF 250
>ref|XP_591149.4| PREDICTED: TEA domain family member 3 [Bos taurus].
Length = 530
Score = 199 bits (505), Expect = 4e-51
Identities = 114/194 (58%), Positives = 131/194 (67%), Gaps = 6/194 (3%)
Frame = +3
Query: 357 EAAPKFASDSPGAAAAPFAEVYFLEKAPGFGLENPAAK-IEPSSWSGSESPAENMERMSD 533
EA +ASDS G G G E A I +SW+ S SP E E +
Sbjct: 70 EALHTWASDSSGCPV-------------GSGPEPRATSTIASNSWNASSSPGEAREDGPE 116
Query: 534 SADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT 713
DK +DNDAEGVW PDIEQSFQEALAIYPPCGR KIIL +EGK YGRNELIARYIKLRT
Sbjct: 117 GLDKGLDNDAEGVWKPDIEQSFQEALAIYPPCGRPKIILLEEGKKYGRNELIARYIKLRT 176
Query: 714 GKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKALQHMAAMSSAQIVSATAIH 881
GKTRTRKQVSSHIQVLA++K R++ +K DQ +KDKALQ MA+MSSAQIVSA+ +
Sbjct: 177 GKTRTRKQVSSHIQVLARKKVREYQVGIKAMNLDQVSKDKALQSMASMSSAQIVSASVLQ 236
Query: 882 NKLGLPG-IPRPTF 920
NK P +P+ F
Sbjct: 237 NKFSPPSPLPQAVF 250
>ref|NP_001096817.1| transcriptional enhancer factor TEF-4 [Bos taurus].
Length = 451
Score = 198 bits (504), Expect = 5e-51
Identities = 106/149 (71%), Positives = 116/149 (77%), Gaps = 4/149 (2%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKAL 827
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSR+ SKLK DQ +KDKA
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKALNVDQVSKDKAF 133
Query: 828 QHMAAMSSAQIVSATAIHNKLGLPGIPRP 914
Q MA MSSAQ++SA ++ KLG G P
Sbjct: 134 QTMATMSSAQLISAPSLQAKLGPAGPQTP 162
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,128,471
Number of extensions: 937964
Number of successful extensions: 3672
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3653
Number of HSP's successfully gapped: 7
Length of query: 307
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,306,398
Effective search space: 2932811590
Effective search space used: 2932811590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008173
(921 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851750.1| PREDICTED: similar to TEA domain family member ... 267 1e-71
Alignment gi|XP_864320.1| PREDICTED: similar to TEA domain family member ... 267 1e-71
Alignment gi|XP_864365.1| PREDICTED: similar to TEA domain family member ... 261 7e-70
Alignment gi|XP_854634.1| PREDICTED: similar to TEA domain family member ... 223 2e-58
Alignment gi|XP_864491.1| PREDICTED: similar to TEA domain family member ... 204 1e-52
Alignment gi|XP_864459.1| PREDICTED: similar to TEA domain family member ... 204 1e-52
Alignment gi|XP_538879.2| PREDICTED: similar to Transcriptional enhancer ... 203 2e-52
Alignment gi|XP_851860.1| PREDICTED: similar to TEA domain family member ... 203 2e-52
Alignment gi|XP_864334.1| PREDICTED: similar to TEA domain family member ... 198 7e-51
Alignment gi|XP_864508.1| PREDICTED: similar to TEA domain family member ... 197 9e-51
>ref|XP_851750.1| PREDICTED: similar to TEA domain family member 1 isoform 1 [Canis
familiaris].
Length = 428
Score = 267 bits (682), Expect = 1e-71
Identities = 133/135 (98%), Positives = 134/135 (99%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 875
YIKLRTGKTRTRKQVSSHIQVLA+RKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 120
Query: 876 IHNKLGLPGIPRPTF 920
IHNKLGLPGIPRP F
Sbjct: 121 IHNKLGLPGIPRPAF 135
>ref|XP_864320.1| PREDICTED: similar to TEA domain family member 1 isoform 2 [Canis
familiaris].
Length = 411
Score = 267 bits (682), Expect = 1e-71
Identities = 133/135 (98%), Positives = 134/135 (99%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 875
YIKLRTGKTRTRKQVSSHIQVLA+RKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 120
Query: 876 IHNKLGLPGIPRPTF 920
IHNKLGLPGIPRP F
Sbjct: 121 IHNKLGLPGIPRPAF 135
>ref|XP_864365.1| PREDICTED: similar to TEA domain family member 1 isoform 3 [Canis
familiaris].
Length = 415
Score = 261 bits (667), Expect = 7e-70
Identities = 133/139 (95%), Positives = 134/139 (96%), Gaps = 4/139 (2%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKALQHMAAMSSAQIV 863
YIKLRTGKTRTRKQVSSHIQVLA+RKSRDFHSKLK DQTAKDKALQHMAAMSSAQIV
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKVTSMDQTAKDKALQHMAAMSSAQIV 120
Query: 864 SATAIHNKLGLPGIPRPTF 920
SATAIHNKLGLPGIPRP F
Sbjct: 121 SATAIHNKLGLPGIPRPAF 139
>ref|XP_854634.1| PREDICTED: similar to TEA domain family member 4 isoform 1 [Canis
familiaris].
Length = 546
Score = 223 bits (569), Expect = 2e-58
Identities = 117/161 (72%), Positives = 127/161 (78%), Gaps = 4/161 (2%)
Frame = +3
Query: 438 PGFGLENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALA 614
P LE A I + WS SP N+ S + DKPIDNDAEGVWSPDIEQSFQEALA
Sbjct: 109 PSGALEGKAGTITSNEWSPPNSPEGSNVSGGSQALDKPIDNDAEGVWSPDIEQSFQEALA 168
Query: 615 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSK 794
IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RK+R+ +K
Sbjct: 169 IYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKAREIQAK 228
Query: 795 LKDQTAKDKALQHMAAMSSAQIVSATAIHNKLGL---PGIP 908
LKDQ AKDKALQ MA MS AQ +SATA H+K+ L PG P
Sbjct: 229 LKDQAAKDKALQSMAPMSPAQAISATAFHSKMALARGPGHP 269
>ref|XP_864491.1| PREDICTED: similar to TEA domain family member 2 isoform 11 [Canis
familiaris].
Length = 458
Score = 204 bits (518), Expect = 1e-52
Identities = 105/144 (72%), Positives = 116/144 (80%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMA 839
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSR+ SKLKDQ +KDKA Q MA
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKDQVSKDKAFQTMA 133
Query: 840 AMSSAQIVSATAIHNKLGLPGIPR 911
MSSAQ++SA ++ KL P + R
Sbjct: 134 TMSSAQLISAPSLQAKLAFPVLVR 157
>ref|XP_864459.1| PREDICTED: similar to TEA domain family member 2 isoform 9 [Canis
familiaris].
Length = 455
Score = 204 bits (518), Expect = 1e-52
Identities = 105/144 (72%), Positives = 116/144 (80%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMA 839
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSR+ SKLKDQ +KDKA Q MA
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKDQVSKDKAFQTMA 133
Query: 840 AMSSAQIVSATAIHNKLGLPGIPR 911
MSSAQ++SA ++ KL P + R
Sbjct: 134 TMSSAQLISAPSLQAKLAFPVLVR 157
>ref|XP_538879.2| PREDICTED: similar to Transcriptional enhancer factor TEF-5 (TEA
domain family member 3) (TEAD-3) (DTEF-1) [Canis
familiaris].
Length = 920
Score = 203 bits (517), Expect = 2e-52
Identities = 113/176 (64%), Positives = 125/176 (71%), Gaps = 26/176 (14%)
Frame = +3
Query: 471 IEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 650
I +SW+ S SP E E + DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL
Sbjct: 465 IASNSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 524
Query: 651 SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHI---------------------QVLAK 767
SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHI QVLA+
Sbjct: 525 SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREYQVGIKVSSHLQVLAR 584
Query: 768 RKSRDFHSKLK----DQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPG-IPRPTF 920
RKSR+ SKLK DQ +KDKALQ MA+MSSAQIVSA+ + NK P +P+ F
Sbjct: 585 RKSREIQSKLKAMNLDQVSKDKALQSMASMSSAQIVSASVLQNKFSPPSPLPQAVF 640
>ref|XP_851860.1| PREDICTED: similar to TEA domain family member 2 isoform 2 [Canis
familiaris].
Length = 446
Score = 203 bits (517), Expect = 2e-52
Identities = 105/141 (74%), Positives = 115/141 (81%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMA 839
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSR+ SKLKDQ +KDKA Q MA
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKDQVSKDKAFQTMA 133
Query: 840 AMSSAQIVSATAIHNKLGLPG 902
MSSAQ++SA ++ KLG G
Sbjct: 134 TMSSAQLISAPSLQAKLGPAG 154
>ref|XP_864334.1| PREDICTED: similar to TEA domain family member 2 isoform 3 [Canis
familiaris].
Length = 453
Score = 198 bits (503), Expect = 7e-51
Identities = 106/148 (71%), Positives = 116/148 (78%), Gaps = 4/148 (2%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKAL 827
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSR+ SKLK DQ +KDKA
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKALNVDQVSKDKAF 133
Query: 828 QHMAAMSSAQIVSATAIHNKLGLPGIPR 911
Q MA MSSAQ++SA ++ KLG G R
Sbjct: 134 QTMATMSSAQLISAPSLQAKLGPAGPQR 161
>ref|XP_864508.1| PREDICTED: similar to TEA domain family member 2 isoform 12 [Canis
familiaris].
Length = 456
Score = 197 bits (502), Expect = 9e-51
Identities = 105/145 (72%), Positives = 115/145 (79%), Gaps = 4/145 (2%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 14 SGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 73
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKAL 827
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSR+ SKLK DQ +KDKA
Sbjct: 74 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKALNVDQVSKDKAF 133
Query: 828 QHMAAMSSAQIVSATAIHNKLGLPG 902
Q MA MSSAQ++SA ++ KLG G
Sbjct: 134 QTMATMSSAQLISAPSLQAKLGPAG 158
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,334,243
Number of extensions: 914490
Number of successful extensions: 3642
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3626
Number of HSP's successfully gapped: 19
Length of query: 307
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 205
Effective length of database: 15,474,232
Effective search space: 3172217560
Effective search space used: 3172217560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008173
(921 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136141.1| transcriptional enhancer factor 1 [Sus scrof... 251 5e-67
Alignment gi|NP_001136138.1| TEA domain family member 4 [Sus scrofa]. 227 6e-60
Alignment gi|NP_001033055.1| transcription enhancer factor 5 [Sus scrofa]. 205 3e-53
Alignment gi|XP_003362097.1| PREDICTED: transcriptional enhancer factor T... 182 2e-46
Alignment gi|XP_001926998.3| PREDICTED: transcriptional enhancer factor T... 174 5e-44
>ref|NP_001136141.1| transcriptional enhancer factor 1 [Sus scrofa].
Length = 436
Score = 251 bits (640), Expect = 5e-67
Identities = 134/160 (83%), Positives = 135/160 (84%), Gaps = 25/160 (15%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQ---------------------VSSHIQVLAKRKSRDFHSKLK---- 800
YIKLRTGKTRTRKQ VSSHIQVLA+RKSRDFHSKLK
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARKKVREIQAAIKVSSHIQVLARRKSRDFHSKLKVTSM 120
Query: 801 DQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTF 920
DQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTF
Sbjct: 121 DQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTF 160
>ref|NP_001136138.1| TEA domain family member 4 [Sus scrofa].
Length = 434
Score = 227 bits (579), Expect = 6e-60
Identities = 117/157 (74%), Positives = 128/157 (81%), Gaps = 4/157 (2%)
Frame = +3
Query: 450 LENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPP 626
+E A I + WS SP N+ S + DKPIDNDAEGVWSPDIEQSFQEALAIYPP
Sbjct: 1 MEGKAGTITSNEWSSPNSPEGSNVSGGSQALDKPIDNDAEGVWSPDIEQSFQEALAIYPP 60
Query: 627 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQ 806
CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RK+R+ +KLKDQ
Sbjct: 61 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLKDQ 120
Query: 807 TAKDKALQHMAAMSSAQIVSATAIHNKLGL---PGIP 908
AKDKALQ MA MSSAQI+SA+A HNK+ L PG P
Sbjct: 121 AAKDKALQSMATMSSAQIISASAFHNKMALARGPGYP 157
>ref|NP_001033055.1| transcription enhancer factor 5 [Sus scrofa].
Length = 435
Score = 205 bits (521), Expect = 3e-53
Identities = 106/152 (69%), Positives = 121/152 (79%), Gaps = 5/152 (3%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
+SW+ S SP E E + DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 4 NSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 63
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKAL 827
GKMYGRNELIARYIKLRTGKTRTRKQVSSH QVLA++K R++ +K DQ +KDKAL
Sbjct: 64 GKMYGRNELIARYIKLRTGKTRTRKQVSSHTQVLARKKVREYQVGIKAMNLDQVSKDKAL 123
Query: 828 QHMAAMSSAQIVSATAIHNKLGLPG-IPRPTF 920
Q MA+MSSAQIVSA+ + NK P +P+ F
Sbjct: 124 QSMASMSSAQIVSASVLQNKFSPPSPLPQAVF 155
>ref|XP_003362097.1| PREDICTED: transcriptional enhancer factor TEF-4, partial [Sus
scrofa].
Length = 392
Score = 182 bits (463), Expect = 2e-46
Identities = 98/141 (69%), Positives = 107/141 (75%)
Frame = +3
Query: 492 GSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY 671
GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY
Sbjct: 1 GSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMY 60
Query: 672 GRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMAAMSS 851
GRNELIARYIKLRTGKTRTRKQVS L +RKSR+ SKLKDQ +KDKA Q MA MSS
Sbjct: 61 GRNELIARYIKLRTGKTRTRKQVSRLTWGLLRRKSREIQSKLKDQVSKDKAFQTMATMSS 120
Query: 852 AQIVSATAIHNKLGLPGIPRP 914
AQ++SA ++ KLG G P
Sbjct: 121 AQLISAPSLQAKLGPAGPQAP 141
>ref|XP_001926998.3| PREDICTED: transcriptional enhancer factor TEF-5-like [Sus scrofa].
Length = 406
Score = 174 bits (442), Expect = 5e-44
Identities = 92/144 (63%), Positives = 105/144 (72%)
Frame = +3
Query: 471 IEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 650
I +SW+ S SP E E + DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL
Sbjct: 42 IASNSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 101
Query: 651 SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQ 830
SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA++K R++ +K LQ
Sbjct: 102 SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREYQVGIK----VSSHLQ 157
Query: 831 HMAAMSSAQIVSATAIHNKLGLPG 902
+A S +I S + + G G
Sbjct: 158 VLARRKSREIQSKLKVDREGGAAG 181
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,991,996
Number of extensions: 692068
Number of successful extensions: 2318
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2302
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 208
Effective length of database: 8,879,129
Effective search space: 1846858832
Effective search space used: 1846858832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008173
(921 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160057.1| transcriptional enhancer factor TEF-1 isofor... 269 3e-72
Alignment gi|NP_033372.1| transcriptional enhancer factor TEF-1 isoform 2... 263 1e-70
Alignment gi|NP_001160056.1| transcriptional enhancer factor TEF-1 isofor... 251 7e-67
Alignment gi|NP_035697.3| transcriptional enhancer factor TEF-3 isoform a... 214 1e-55
Alignment gi|NP_001091696.2| transcriptional enhancer factor TEF-5 isofor... 209 3e-54
Alignment gi|NP_001191085.1| transcriptional enhancer factor TEF-5 isofor... 207 7e-54
Alignment gi|NP_035696.3| transcriptional enhancer factor TEF-5 isoform 2... 207 7e-54
Alignment gi|NP_035695.1| transcriptional enhancer factor TEF-4 [Mus musc... 201 7e-52
Alignment gi|NP_001074448.2| transcriptional enhancer factor TEF-3 isofor... 166 2e-41
>ref|NP_001160057.1| transcriptional enhancer factor TEF-1 isoform 3 [Mus musculus].
Length = 411
Score = 269 bits (687), Expect = 3e-72
Identities = 134/135 (99%), Positives = 135/135 (100%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 875
YIKLRTGKTRTRKQVSSHIQVLA+RKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQHMAAMSSAQIVSATA 120
Query: 876 IHNKLGLPGIPRPTF 920
IHNKLGLPGIPRPTF
Sbjct: 121 IHNKLGLPGIPRPTF 135
>ref|NP_033372.1| transcriptional enhancer factor TEF-1 isoform 2 [Mus musculus].
Length = 415
Score = 263 bits (672), Expect = 1e-70
Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 4/139 (2%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKALQHMAAMSSAQIV 863
YIKLRTGKTRTRKQVSSHIQVLA+RKSRDFHSKLK DQTAKDKALQHMAAMSSAQIV
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKVTSMDQTAKDKALQHMAAMSSAQIV 120
Query: 864 SATAIHNKLGLPGIPRPTF 920
SATAIHNKLGLPGIPRPTF
Sbjct: 121 SATAIHNKLGLPGIPRPTF 139
>ref|NP_001160056.1| transcriptional enhancer factor TEF-1 isoform 1 [Mus musculus].
Length = 436
Score = 251 bits (640), Expect = 7e-67
Identities = 134/160 (83%), Positives = 135/160 (84%), Gaps = 25/160 (15%)
Frame = +3
Query: 516 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 695
MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR
Sbjct: 1 MERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR 60
Query: 696 YIKLRTGKTRTRKQ---------------------VSSHIQVLAKRKSRDFHSKLK---- 800
YIKLRTGKTRTRKQ VSSHIQVLA+RKSRDFHSKLK
Sbjct: 61 YIKLRTGKTRTRKQVSSHIQVLARKKVREIQAAIKVSSHIQVLARRKSRDFHSKLKVTSM 120
Query: 801 DQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTF 920
DQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTF
Sbjct: 121 DQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPGIPRPTF 160
>ref|NP_035697.3| transcriptional enhancer factor TEF-3 isoform a [Mus musculus].
Length = 427
Score = 214 bits (544), Expect = 1e-55
Identities = 109/147 (74%), Positives = 126/147 (85%), Gaps = 4/147 (2%)
Frame = +3
Query: 480 SSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSD 656
+ WS +SP ++ S + DKPIDNDAEGVWSP+IE+SFQEALAIYPPCGRRKIIL++
Sbjct: 4 NEWSSPDSPEGSSISGGSQALDKPIDNDAEGVWSPEIERSFQEALAIYPPCGRRKIILTE 63
Query: 657 EGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHM 836
EGKMYGRNELIAR+IKLRTGKTRTRKQVSSHIQVLA+RK+R+ +KLKDQ AK+KALQ M
Sbjct: 64 EGKMYGRNELIARHIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLKDQAAKNKALQSM 123
Query: 837 AAMSSAQIVSATAIHNKLGL---PGIP 908
AAMSSAQIVSATA H+K+ L PG P
Sbjct: 124 AAMSSAQIVSATAFHSKMALARGPGYP 150
>ref|NP_001091696.2| transcriptional enhancer factor TEF-5 isoform 1 [Mus musculus].
Length = 465
Score = 209 bits (531), Expect = 3e-54
Identities = 112/166 (67%), Positives = 128/166 (77%), Gaps = 6/166 (3%)
Frame = +3
Query: 441 GFGLENPAAK-IEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAI 617
G G E A I +SW+ + SP E E S+ DK +DNDAEGVWSPDIEQSFQEALAI
Sbjct: 16 GSGPEPKATSTIASNSWTANSSPGEAREDGSEGLDKGLDNDAEGVWSPDIEQSFQEALAI 75
Query: 618 YPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKL 797
YPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA++K R++ +
Sbjct: 76 YPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREYQVGI 135
Query: 798 K----DQTAKDKALQHMAAMSSAQIVSATAIHNKLGLPG-IPRPTF 920
K DQ +KDKALQ MA+MSSAQIVSA+ + NK P +P+ F
Sbjct: 136 KAMNLDQVSKDKALQSMASMSSAQIVSASVLQNKFSPPSPLPQAVF 181
>ref|NP_001191085.1| transcriptional enhancer factor TEF-5 isoform 2 [Mus musculus].
Length = 439
Score = 207 bits (528), Expect = 7e-54
Identities = 107/152 (70%), Positives = 123/152 (80%), Gaps = 5/152 (3%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
+SW+ + SP E E S+ DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 4 NSWTANSSPGEAREDGSEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 63
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKAL 827
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA++K R++ +K DQ +KDKAL
Sbjct: 64 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREYQVGIKAMNLDQVSKDKAL 123
Query: 828 QHMAAMSSAQIVSATAIHNKLGLPG-IPRPTF 920
Q MA+MSSAQIVSA+ + NK P +P+ F
Sbjct: 124 QSMASMSSAQIVSASVLQNKFSPPSPLPQAVF 155
>ref|NP_035696.3| transcriptional enhancer factor TEF-5 isoform 2 [Mus musculus].
Length = 439
Score = 207 bits (528), Expect = 7e-54
Identities = 107/152 (70%), Positives = 123/152 (80%), Gaps = 5/152 (3%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
+SW+ + SP E E S+ DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 4 NSWTANSSPGEAREDGSEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 63
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKAL 827
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA++K R++ +K DQ +KDKAL
Sbjct: 64 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREYQVGIKAMNLDQVSKDKAL 123
Query: 828 QHMAAMSSAQIVSATAIHNKLGLPG-IPRPTF 920
Q MA+MSSAQIVSA+ + NK P +P+ F
Sbjct: 124 QSMASMSSAQIVSASVLQNKFSPPSPLPQAVF 155
>ref|NP_035695.1| transcriptional enhancer factor TEF-4 [Mus musculus].
Length = 445
Score = 201 bits (511), Expect = 7e-52
Identities = 105/144 (72%), Positives = 116/144 (80%)
Frame = +3
Query: 486 WSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGK 665
W+GSE +E S+ DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGK
Sbjct: 16 WTGSEEGSEEGTGGSEGVGGDGSPDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGK 75
Query: 666 MYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQHMAAM 845
MYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSR+ SKLKDQ +KDKA Q MA M
Sbjct: 76 MYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKDQVSKDKAFQTMATM 135
Query: 846 SSAQIVSATAIHNKLGLPGIPRPT 917
SSAQ++SA ++ KLG P P+ T
Sbjct: 136 SSAQLISAPSLQAKLG-PSGPQAT 158
>ref|NP_001074448.2| transcriptional enhancer factor TEF-3 isoform b [Mus musculus].
Length = 384
Score = 166 bits (421), Expect = 2e-41
Identities = 81/108 (75%), Positives = 95/108 (87%), Gaps = 1/108 (0%)
Frame = +3
Query: 480 SSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSD 656
+ WS +SP ++ S + DKPIDNDAEGVWSP+IE+SFQEALAIYPPCGRRKIIL++
Sbjct: 4 NEWSSPDSPEGSSISGGSQALDKPIDNDAEGVWSPEIERSFQEALAIYPPCGRRKIILTE 63
Query: 657 EGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK 800
EGKMYGRNELIAR+IKLRTGKTRTRKQVSSHIQVLA+RK+R+ +KLK
Sbjct: 64 EGKMYGRNELIARHIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLK 111
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,037,380
Number of extensions: 726948
Number of successful extensions: 2743
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2729
Number of HSP's successfully gapped: 9
Length of query: 307
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 206
Effective length of database: 12,583,923
Effective search space: 2592288138
Effective search space used: 2592288138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008173
(921 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068780.2| transcriptional enhancer factor TEF-1 [Homo sap... 298 4e-81
Alignment gi|NP_003204.2| transcriptional enhancer factor TEF-3 isoform 1... 222 3e-58
Alignment gi|NP_003205.2| transcriptional enhancer factor TEF-5 [Homo sap... 207 1e-53
Alignment gi|NP_003589.1| transcriptional enhancer factor TEF-4 [Homo sap... 204 7e-53
Alignment gi|NP_958849.1| transcriptional enhancer factor TEF-3 isoform 2... 176 3e-44
>ref|NP_068780.2| transcriptional enhancer factor TEF-1 [Homo sapiens].
Length = 426
Score = 298 bits (764), Expect = 4e-81
Identities = 148/150 (98%), Positives = 150/150 (100%)
Frame = +3
Query: 471 IEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 650
+EPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL
Sbjct: 1 MEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIIL 60
Query: 651 SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDKALQ 830
SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSRDFHSKLKDQTAKDKALQ
Sbjct: 61 SDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRDFHSKLKDQTAKDKALQ 120
Query: 831 HMAAMSSAQIVSATAIHNKLGLPGIPRPTF 920
HMAAMSSAQIVSATAIHNKLGLPGIPRPTF
Sbjct: 121 HMAAMSSAQIVSATAIHNKLGLPGIPRPTF 150
>ref|NP_003204.2| transcriptional enhancer factor TEF-3 isoform 1 [Homo sapiens].
Length = 434
Score = 222 bits (566), Expect = 3e-58
Identities = 116/157 (73%), Positives = 126/157 (80%), Gaps = 4/157 (2%)
Frame = +3
Query: 450 LENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPP 626
+E A I + WS SP S + DKPIDNDAEGVWSPDIEQSFQEALAIYPP
Sbjct: 1 MEGTAGTITSNEWSSPTSPEGSTASGGSQALDKPIDNDAEGVWSPDIEQSFQEALAIYPP 60
Query: 627 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQ 806
CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RK+R+ +KLKDQ
Sbjct: 61 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLKDQ 120
Query: 807 TAKDKALQHMAAMSSAQIVSATAIHNKLGL---PGIP 908
AKDKALQ MAAMSSAQI+SATA H+ + L PG P
Sbjct: 121 AAKDKALQSMAAMSSAQIISATAFHSSMALARGPGRP 157
>ref|NP_003205.2| transcriptional enhancer factor TEF-5 [Homo sapiens].
Length = 435
Score = 207 bits (526), Expect = 1e-53
Identities = 107/152 (70%), Positives = 122/152 (80%), Gaps = 5/152 (3%)
Frame = +3
Query: 480 SSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 659
+SW+ S SP E E + DK +DNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE
Sbjct: 4 NSWNASSSPGEAREDGPEGLDKGLDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDE 63
Query: 660 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK----DQTAKDKAL 827
GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA++K R++ +K DQ +KDKAL
Sbjct: 64 GKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARKKVREYQVGIKAMNLDQVSKDKAL 123
Query: 828 QHMAAMSSAQIVSATAIHNKLGLPG-IPRPTF 920
Q MA+MSSAQIVSA+ + NK P +P+ F
Sbjct: 124 QSMASMSSAQIVSASVLQNKFSPPSPLPQAVF 155
>ref|NP_003589.1| transcriptional enhancer factor TEF-4 [Homo sapiens].
Length = 447
Score = 204 bits (520), Expect = 7e-53
Identities = 107/147 (72%), Positives = 118/147 (80%)
Frame = +3
Query: 462 AAKIEPSSWSGSESPAENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRK 641
AA + S W+GSE +E S+ A DAEGVWSPDIEQSFQEALAIYPPCGRRK
Sbjct: 8 AALDDGSGWTGSEEGSEEGTGGSEGAGGDGGPDAEGVWSPDIEQSFQEALAIYPPCGRRK 67
Query: 642 IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLKDQTAKDK 821
IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RKSR+ SKLKDQ +KDK
Sbjct: 68 IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSREIQSKLKDQVSKDK 127
Query: 822 ALQHMAAMSSAQIVSATAIHNKLGLPG 902
A Q MA MSSAQ++SA ++ KLG G
Sbjct: 128 AFQTMATMSSAQLISAPSLQAKLGPTG 154
>ref|NP_958849.1| transcriptional enhancer factor TEF-3 isoform 2 [Homo sapiens].
Length = 391
Score = 176 bits (446), Expect = 3e-44
Identities = 89/118 (75%), Positives = 96/118 (81%), Gaps = 1/118 (0%)
Frame = +3
Query: 450 LENPAAKIEPSSWSGSESP-AENMERMSDSADKPIDNDAEGVWSPDIEQSFQEALAIYPP 626
+E A I + WS SP S + DKPIDNDAEGVWSPDIEQSFQEALAIYPP
Sbjct: 1 MEGTAGTITSNEWSSPTSPEGSTASGGSQALDKPIDNDAEGVWSPDIEQSFQEALAIYPP 60
Query: 627 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAKRKSRDFHSKLK 800
CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA+RK+R+ +KLK
Sbjct: 61 CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLK 118
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,460,046
Number of extensions: 882431
Number of successful extensions: 3662
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3641
Number of HSP's successfully gapped: 5
Length of query: 307
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 205
Effective length of database: 14,934,836
Effective search space: 3061641380
Effective search space used: 3061641380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008173
(921 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 517 e-144
gb|GL896292.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 90 3e-15
Sscrofa_Chr05 90 3e-15
Sscrofa_Chr01 84 2e-13
>Sscrofa_Chr02
|| Length = 162569375
Score = 517 bits (261), Expect = e-144
Identities = 261/261 (100%)
Strand = Plus / Minus
Query: 415 aggtttattttcttgaaaaggctccaggcttcggcttggaaaatccggccgccaaaattg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50007345 aggtttattttcttgaaaaggctccaggcttcggcttggaaaatccggccgccaaaattg 50007286
Query: 475 agcccagcagctggagcggcagtgagagccctgccgaaaatatggaaaggatgagtgact 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50007285 agcccagcagctggagcggcagtgagagccctgccgaaaatatggaaaggatgagtgact 50007226
Query: 535 ctgcagataagcccattgacaatgatgcagaaggggtctggagccccgacattgagcaga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50007225 ctgcagataagcccattgacaatgatgcagaaggggtctggagccccgacattgagcaga 50007166
Query: 595 gctttcaggaagccttggctatctatccaccatgtgggaggaggaaaatcatcttatcag 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50007165 gctttcaggaagccttggctatctatccaccatgtgggaggaggaaaatcatcttatcag 50007106
Query: 655 atgaaggcaagatgtatggta 675
|||||||||||||||||||||
Sbjct: 50007105 atgaaggcaagatgtatggta 50007085
Score = 238 bits (120), Expect = 4e-60
Identities = 123/124 (99%)
Strand = Plus / Minus
Query: 798 aaggatcagactgcgaaagataaggccctgcagcacatggccgccatgtcatcagcccag 857
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49901836 aaggatcagactgcgaaggataaggccctgcagcacatggccgccatgtcatcagcccag 49901777
Query: 858 atcgtctcggccactgccattcacaacaagctggggctgcccgggattccacgccccacc 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49901776 atcgtctcggccactgccattcacaacaagctggggctgcccgggattccacgccccacc 49901717
Query: 918 ttcc 921
||||
Sbjct: 49901716 ttcc 49901713
Score = 135 bits (68), Expect = 5e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 672 ggtaggaatgaattaatagccagatacatcaaactcaggacagggaagacgaggaccaga 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49912044 ggtaggaatgaattaatagccagatacatcaaactcaggacagggaagacgaggaccaga 49911985
Query: 732 aaacaggt 739
||||||||
Sbjct: 49911984 aaacaggt 49911977
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1 attccgaacattcttagcatcgctcgcgccttgccgcgccgcccgagccgagccgagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50101205 attccgaacattcttagcatcgctcgcgccttgccgcgccgcccgagccgagccgagcct 50101146
Query: 61 ctgca 65
|||||
Sbjct: 50101145 ctgca 50101141
Score = 125 bits (63), Expect = 5e-26
Identities = 66/67 (98%)
Strand = Plus / Minus
Query: 735 caggtgtctagtcacattcaggttcttgccaaaaggaaatctcgtgattttcattccaag 794
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 49909440 caggtgtctagtcacattcaggttcttgccagaaggaaatctcgtgattttcattccaag 49909381
Query: 795 ctaaagg 801
|||||||
Sbjct: 49909380 ctaaagg 49909374
Score = 81.8 bits (41), Expect = 6e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 103 accaagcactttgcagactcgcttccaccctgcgggccagt 143
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 50101103 accaagcactttgcagactcgcttccaccctgcgggccagt 50101063
Score = 63.9 bits (32), Expect = 1e-07
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 181 ggggacaggccatgcagtgaagnnnnnnnaccccgtccacctttgcccggagc 233
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 50101025 ggggacaggccatgcagtgaagcccccccaccccgtccacctttgcccggagc 50100973
>gb|GL896292.1| Sus scrofa unplaced genomic scaffold chrU_scaffold647
Length = 15493
Score = 89.7 bits (45), Expect = 3e-15
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 570 gtctggagccccgacattgagcagagctttcaggaagccttggctatctatccaccatgt 629
|||||||| || ||||| ||||||||||| ||||| ||| |||| ||||| ||||| |||
Sbjct: 13090 gtctggagtccagacatcgagcagagcttccaggaggccctggccatctacccaccctgt 13031
Query: 630 gggaggaggaaaatcatcttatcagatgaaggcaagatgtatggt 674
|| || ||||||||||| | || |||||||||||||||||||||
Sbjct: 13030 ggtcggcggaaaatcatcctgtcggatgaaggcaagatgtatggt 12986
>Sscrofa_Chr05
|| Length = 111506441
Score = 89.7 bits (45), Expect = 3e-15
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 543 aagcccattgacaatgatgcagaaggggtctggagccccgacattgagcagagctttcag 602
||||||||||||||||| ||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 69455231 aagcccattgacaatgacgcagagggcgtgtggagccccgacatcgagcagagcttccag 69455172
Query: 603 gaagccttggctatctatccaccatgtgggaggaggaaaatcatcttatcagatgaaggc 662
|| ||| |||| ||||| || || || || || | || |||||| |||| ||||| |||
Sbjct: 69455171 gaggccctggccatctacccgccctgcggtcggcgcaagatcatcctatcggatgagggc 69455112
Query: 663 aagatgtatggta 675
|||||||| ||||
Sbjct: 69455111 aagatgtacggta 69455099
>Sscrofa_Chr01
|| Length = 315321322
Score = 83.8 bits (42), Expect = 2e-13
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 849 tcagcccagatcgtctcggccactgccattcacaacaagct-ggggctgcccgggattcc 907
|||||||||| |||||||||||||||||||||| |||||| |||||| || ||||||||
Sbjct: 92033504 tcagcccagaatgtctcggccactgccattcacagcaagctgggggcttcctgggattcc 92033563
Query: 908 acgccccaccttcc 921
|||| |||||||||
Sbjct: 92033564 acgctccaccttcc 92033577
Score = 83.8 bits (42), Expect = 2e-13
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 849 tcagcccagatcgtctcggccactgccattcacaacaagct-ggggctgcccgggattcc 907
|||||||||| |||||||||||||||||||||| |||||| |||||| || ||||||||
Sbjct: 92245644 tcagcccagaatgtctcggccactgccattcacagcaagctgggggcttcctgggattcc 92245585
Query: 908 acgccccaccttcc 921
|||| |||||||||
Sbjct: 92245584 acgctccaccttcc 92245571
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,396,116
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 11
Length of query: 921
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 900
Effective length of database: 2,808,413,156
Effective search space: 2527571840400
Effective search space used: 2527571840400
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)