Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008175
(995 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002693064.1| PREDICTED: Nicotinamide N-methyltransferase-... 257 1e-68
Alignment gi|XP_588443.2| PREDICTED: Nicotinamide N-methyltransferase-lik... 257 1e-68
Alignment gi|NP_001179577.1| indolethylamine N-methyltransferase [Bos tau... 246 3e-65
Alignment gi|XP_002686891.1| PREDICTED: indolethylamine N-methyltransfera... 246 3e-65
Alignment gi|NP_803471.2| phenylethanolamine N-methyltransferase [Bos tau... 169 3e-42
>ref|XP_002693064.1| PREDICTED: Nicotinamide N-methyltransferase-like [Bos taurus].
Length = 263
Score = 257 bits (656), Expect = 1e-68
Identities = 138/254 (54%), Positives = 172/254 (67%), Gaps = 3/254 (1%)
Frame = +3
Query: 123 DAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLIDIGSGPTI 302
D Y +F P YLE YY + D++L LLK F G++G LLIDIGSGPTI
Sbjct: 10 DVYQENFEPTSYLE-YYRMN-QDPVGDEVLHFLLKHYNATFKPGGLEGKLLIDIGSGPTI 67
Query: 303 YQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGNRVKGTEKE 482
YQ LSACESF+EIIATDYTD+NLQELEKWLKK PGAFDWSPVV YVCELEGNR K EKE
Sbjct: 68 YQFLSACESFQEIIATDYTDKNLQELEKWLKKMPGAFDWSPVVKYVCELEGNRDKWAEKE 127
Query: 483 EKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTALGNLRSLLK 662
E++RRAV +VLKCDV + PL LPPAD L+S+LCL AACP R AL +LR+LL+
Sbjct: 128 ERVRRAVTQVLKCDVLKERPLEPAVLPPADGLISSLCLEAACPTPQACRDALRHLRTLLR 187
Query: 663 PGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQSYSSTMAN 842
PGG LVL +++++M+G++RFS+L L G+ IE E ++++ + + N
Sbjct: 188 PGGHLVLSGGFETTFFMVGDKRFSTLPLNEKFLREALQEAGFIIEKLEKVTRAAETHLDN 247
Query: 843 NE---GLFSLVGRK 875
GLF LV R+
Sbjct: 248 RSDYTGLFFLVARR 261
>ref|XP_588443.2| PREDICTED: Nicotinamide N-methyltransferase-like [Bos taurus].
Length = 263
Score = 257 bits (656), Expect = 1e-68
Identities = 138/254 (54%), Positives = 172/254 (67%), Gaps = 3/254 (1%)
Frame = +3
Query: 123 DAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLIDIGSGPTI 302
D Y +F P YLE YY + D++L LLK F G++G LLIDIGSGPTI
Sbjct: 10 DVYQENFEPTSYLE-YYRMN-QDPVGDEVLHFLLKHYNATFKPGGLEGKLLIDIGSGPTI 67
Query: 303 YQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGNRVKGTEKE 482
YQ LSACESF+EIIATDYTD+NLQELEKWLKK PGAFDWSPVV YVCELEGNR K EKE
Sbjct: 68 YQFLSACESFQEIIATDYTDKNLQELEKWLKKMPGAFDWSPVVKYVCELEGNRDKWAEKE 127
Query: 483 EKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTALGNLRSLLK 662
E++RRAV +VLKCDV + PL LPPAD L+S+LCL AACP R AL +LR+LL+
Sbjct: 128 ERVRRAVTQVLKCDVLKERPLEPAVLPPADGLISSLCLEAACPTPQACRDALRHLRTLLR 187
Query: 663 PGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQSYSSTMAN 842
PGG LVL +++++M+G++RFS+L L G+ IE E ++++ + + N
Sbjct: 188 PGGHLVLSGGFETTFFMVGDKRFSTLPLNEKFLREALQEAGFIIEKLEKVTRAAETHLDN 247
Query: 843 NE---GLFSLVGRK 875
GLF LV R+
Sbjct: 248 RSDYTGLFFLVARR 261
>ref|NP_001179577.1| indolethylamine N-methyltransferase [Bos taurus].
Length = 263
Score = 246 bits (627), Expect = 3e-65
Identities = 128/259 (49%), Positives = 164/259 (63%)
Frame = +3
Query: 99 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 278
ME + Y + F PQ+YL+ YY F + AE+++L+ L LF+ F G+ GD+LI
Sbjct: 1 MEGELYKGEDYKTEFQPQNYLKTYYAFDSGTIAENEVLKFNLNNLFETFSPGGMGGDILI 60
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQLLSACE F+EII +DYT+ NL+E++KWLKKE GA+DWSP V YVCELEG+
Sbjct: 61 DIGSGPTIYQLLSACEVFREIIMSDYTELNLREVDKWLKKELGAYDWSPAVQYVCELEGD 120
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 638
R K EKE ++RR VKR+L CDV Q PLG+ +P ADC+LS L L AC D+ YR A+
Sbjct: 121 RSKWQEKEARVRRTVKRLLTCDVNQPRPLGSAQVPAADCVLSLLALECACRDVDAYRAAI 180
Query: 639 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQ 818
NL LLKPGG LV + AL+ YM+G ++F L L G + +
Sbjct: 181 QNLVGLLKPGGHLVTLVALRCCEYMVGSRKFFVLSLEQETVEKALQEAGCQVLKCQYSPI 240
Query: 819 SYSSTMANNEGLFSLVGRK 875
YS NEG +V RK
Sbjct: 241 KYSEAFCLNEGFCFVVARK 259
>ref|XP_002686891.1| PREDICTED: indolethylamine N-methyltransferase-like [Bos taurus].
Length = 263
Score = 246 bits (627), Expect = 3e-65
Identities = 128/259 (49%), Positives = 164/259 (63%)
Frame = +3
Query: 99 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 278
ME + Y + F PQ+YL+ YY F + AE+++L+ L LF+ F G+ GD+LI
Sbjct: 1 MEGELYKGEDYKTEFQPQNYLKTYYAFDSGTIAENEVLKFNLNNLFETFSPGGMGGDILI 60
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQLLSACE F+EII +DYT+ NL+E++KWLKKE GA+DWSP V YVCELEG+
Sbjct: 61 DIGSGPTIYQLLSACEVFREIIMSDYTELNLREVDKWLKKELGAYDWSPAVQYVCELEGD 120
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 638
R K EKE ++RR VKR+L CDV Q PLG+ +P ADC+LS L L AC D+ YR A+
Sbjct: 121 RSKWQEKEARVRRTVKRLLTCDVNQPRPLGSAQVPAADCVLSLLALECACRDVDAYRAAI 180
Query: 639 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQ 818
NL LLKPGG LV + AL+ YM+G ++F L L G + +
Sbjct: 181 QNLVGLLKPGGHLVTLVALRCCEYMVGSRKFFVLSLEQETVEKALQEAGCQVLKCQYSPI 240
Query: 819 SYSSTMANNEGLFSLVGRK 875
YS NEG +V RK
Sbjct: 241 KYSEAFCLNEGFCFVVARK 259
>ref|NP_803471.2| phenylethanolamine N-methyltransferase [Bos taurus].
Length = 283
Score = 169 bits (428), Expect = 3e-42
Identities = 96/215 (44%), Positives = 128/215 (59%), Gaps = 4/215 (1%)
Frame = +3
Query: 102 ESGFTSKDAYLSHFNPQDYLEKYYNFGAKH-SAEDQILRHLLKILFKIFCLDGVKGDLLI 278
+ G + + F P+ YL Y S D + L+ L + F V G LI
Sbjct: 17 DPGLAAVSSAYQRFEPRAYLRNNYAPPRGDLSCPDGVGPWKLRCLAQTFATGEVSGRTLI 76
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQLLSAC F++I TD+ + N QEL WL++EPGAFDWS +VC +EG
Sbjct: 77 DIGSGPTIYQLLSACAHFEDITMTDFLEVNRQELRLWLREEPGAFDWSVYSQHVCLIEGK 136
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGA---VPLPPADCLLSTLCLHAACPDLPTYR 629
EKE +LR VKR+L DV + PLGA PL PAD L+S CL A PDL +++
Sbjct: 137 GESWQEKECQLRARVKRILPIDVHRPQPLGAGGLAPL-PADALVSAFCLEAVSPDLASFQ 195
Query: 630 TALGNLRSLLKPGGFLVLVDALKSSYYMIGEQRFS 734
AL ++ +LL+PGG L+L+ AL+ S+Y+ GE R +
Sbjct: 196 RALDHITTLLRPGGHLLLIGALEESWYLAGEARLA 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,688,522
Number of extensions: 1032995
Number of successful extensions: 4500
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4461
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008175
(995 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546514.2| PREDICTED: similar to nicotinamide N-methyltran... 446 e-125
Alignment gi|XP_546515.2| PREDICTED: similar to nicotinamide N-methyltran... 244 9e-65
Alignment gi|XP_548143.2| PREDICTED: similar to Phenylethanolamine N-meth... 169 3e-42
>ref|XP_546514.2| PREDICTED: similar to nicotinamide N-methyltransferase [Canis
familiaris].
Length = 264
Score = 446 bits (1148), Expect = e-125
Identities = 221/264 (83%), Positives = 233/264 (88%)
Frame = +3
Query: 99 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 278
MES FTSKD YL HFNP+DYLEKYYNFG +HSAE++ILRHLLK LFKIFCLDGVKGDLLI
Sbjct: 1 MESSFTSKDTYLRHFNPRDYLEKYYNFGTRHSAENEILRHLLKNLFKIFCLDGVKGDLLI 60
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQLLSACESFKEIIATDYTDQNLQEL+KWLKKEPGAFDWSPVVTYVCELEGN
Sbjct: 61 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELQKWLKKEPGAFDWSPVVTYVCELEGN 120
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 638
RVKG EKEEKLRR VK+VLKCDVTQS PLGA+ LPPADCLLSTLCL AACPDLP Y AL
Sbjct: 121 RVKGLEKEEKLRRVVKQVLKCDVTQSRPLGAMSLPPADCLLSTLCLDAACPDLPAYCAAL 180
Query: 639 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQ 818
NL SLLKPGGFLV+VDALKSSYYMIGEQRFSSLCLG GY++E FEVI Q
Sbjct: 181 RNLGSLLKPGGFLVVVDALKSSYYMIGEQRFSSLCLGREAVEAAVREAGYSVERFEVICQ 240
Query: 819 SYSSTMANNEGLFSLVGRKLSPCV 890
YSSTM++NEGLFSLVGRKLS V
Sbjct: 241 GYSSTMSDNEGLFSLVGRKLSKSV 264
>ref|XP_546515.2| PREDICTED: similar to nicotinamide N-methyltransferase [Canis
familiaris].
Length = 270
Score = 244 bits (623), Expect = 9e-65
Identities = 138/264 (52%), Positives = 171/264 (64%), Gaps = 10/264 (3%)
Frame = +3
Query: 114 TSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLK---ILFKIFCL----DGVKGDL 272
T D Y ++F P YL YY G ++ D +L+ LK FK C+ G++G L
Sbjct: 7 TGLDVYQTYFEPTTYLG-YYKMG-QNPVGDDVLQFSLKHYNATFKPECVCSKAGGLRGKL 64
Query: 273 LIDIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELE 452
LIDIGSGPTIYQLLSACESF+EIIATDYTD+N ELEKWLKK PGAFDWSPVV YVCELE
Sbjct: 65 LIDIGSGPTIYQLLSACESFEEIIATDYTDKNRLELEKWLKKMPGAFDWSPVVKYVCELE 124
Query: 453 GNRVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRT 632
G+R K EKEE+LRR V+RVLKCDV + PL LP ADCLLS+LCL +AC L +R
Sbjct: 125 GDRDKWAEKEERLRRTVRRVLKCDVGKERPLEPAVLPLADCLLSSLCLESACGTLEAFRD 184
Query: 633 ALGNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVI 812
AL +LR LL+P G LVL + ++YM+G+ RF+ L L G+TIE E
Sbjct: 185 ALRHLRPLLRPRGHLVLTGSFDCTFYMVGDSRFTVLPLKEKVLREVLQESGFTIERLEKA 244
Query: 813 SQSYSSTM---ANNEGLFSLVGRK 875
+ + + ++ GLF LV +K
Sbjct: 245 QRGPETVLEKCSDYTGLFFLVAQK 268
>ref|XP_548143.2| PREDICTED: similar to Phenylethanolamine N-methyltransferase
(PNMTase) (Noradrenaline N-methyltransferase) [Canis
familiaris].
Length = 291
Score = 169 bits (429), Expect = 3e-42
Identities = 97/200 (48%), Positives = 123/200 (61%), Gaps = 4/200 (2%)
Frame = +3
Query: 141 FNPQDYLEKYYNFGAKH-SAEDQILRHLLKILFKIFCLDGVKGDLLIDIGSGPTIYQLLS 317
F P+ YL Y S+ D + L+ L + F V G LIDIGSGPTIYQLLS
Sbjct: 38 FEPRAYLRNNYAPPRGDLSSPDGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTIYQLLS 97
Query: 318 ACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGNRVKGTEKEEKLRR 497
AC F++I TD+ + N QEL WL++EPGA DWS VC +EG EKE +LR
Sbjct: 98 ACTHFEDITMTDFLEVNRQELGLWLREEPGALDWSMYSQRVCIMEGKGESWREKERQLRA 157
Query: 498 AVKRVLKCDVTQSWPLGA---VPLPPADCLLSTLCLHAACPDLPTYRTALGNLRSLLKPG 668
VKRVL DV Q PLGA PL PAD L+S CL A PDLP+++ AL ++ +LL+PG
Sbjct: 158 RVKRVLHIDVHQPQPLGAGNLAPL-PADALVSAFCLEAVSPDLPSFQRALDHITTLLRPG 216
Query: 669 GFLVLVDALKSSYYMIGEQR 728
G L+L+ AL+ S+Y+ GE R
Sbjct: 217 GHLLLIGALEESWYLAGEAR 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,386,096
Number of extensions: 1064892
Number of successful extensions: 4306
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4288
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008175
(995 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116618.1| nicotinamide N-methyltransferase [Sus scrofa]. 514 e-146
Alignment gi|XP_003134858.2| PREDICTED: hypothetical protein LOC100512997... 236 1e-62
Alignment gi|NP_001116636.1| phenylethanolamine N-methyltransferase [Sus ... 169 3e-42
Alignment gi|XP_003361579.1| PREDICTED: indolethylamine N-methyltransfera... 139 2e-33
>ref|NP_001116618.1| nicotinamide N-methyltransferase [Sus scrofa].
Length = 264
Score = 514 bits (1324), Expect = e-146
Identities = 253/264 (95%), Positives = 253/264 (95%)
Frame = +3
Query: 99 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 278
MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI
Sbjct: 1 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 60
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN
Sbjct: 61 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 120
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 638
RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL
Sbjct: 121 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 180
Query: 639 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQ 818
GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLG GYTIEHFEVISQ
Sbjct: 181 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGQEAVEAAVREAGYTIEHFEVISQ 240
Query: 819 SYSSTMANNEGLFSLVGRKLSPCV 890
SYSSTMANNEGLFSLVGRKLSPCV
Sbjct: 241 SYSSTMANNEGLFSLVGRKLSPCV 264
>ref|XP_003134858.2| PREDICTED: hypothetical protein LOC100512997 [Sus scrofa].
Length = 600
Score = 236 bits (603), Expect = 1e-62
Identities = 123/239 (51%), Positives = 157/239 (65%)
Frame = +3
Query: 159 LEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLIDIGSGPTIYQLLSACESFKE 338
L+ YY + AE++IL+ LK LF+ F GV GD+LIDIG+GPTIYQLLSACE F+E
Sbjct: 358 LKTYYTXDSGTVAENEILKFNLKNLFQTFSSGGVGGDILIDIGTGPTIYQLLSACEVFRE 417
Query: 339 IIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGNRVKGTEKEEKLRRAVKRVLK 518
II +DYTDQNL+E+EKWLK+EPGA+DWSP V YVCELEG+R + EKE +LRR V R+LK
Sbjct: 418 IIVSDYTDQNLREVEKWLKEEPGAYDWSPAVQYVCELEGDRSRWQEKEARLRRTVTRLLK 477
Query: 519 CDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTALGNLRSLLKPGGFLVLVDALK 698
CDVT+ PLG + PADC+L+ L L AC D+ TYR A+ NL SLLKPGG+LV L
Sbjct: 478 CDVTEPHPLGPAQVLPADCVLTLLALECACHDVDTYRAAIRNLVSLLKPGGYLVTAVTLG 537
Query: 699 SSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQSYSSTMANNEGLFSLVGRK 875
Y++G + F L L G + + SY+ T ++G+ V RK
Sbjct: 538 FQGYIVGNKNFFGLHLEKETVEKALQDAGCQVLRCQHSPISYTETFCISKGMCFAVARK 596
>ref|NP_001116636.1| phenylethanolamine N-methyltransferase [Sus scrofa].
Length = 283
Score = 169 bits (427), Expect = 3e-42
Identities = 94/202 (46%), Positives = 123/202 (60%), Gaps = 3/202 (1%)
Frame = +3
Query: 138 HFNPQDYLEKYYNFGAKH-SAEDQILRHLLKILFKIFCLDGVKGDLLIDIGSGPTIYQLL 314
HF P+ YL Y S+ D + L+ L + F V G LIDIGSGPTIYQLL
Sbjct: 29 HFEPRAYLRNNYAPPRGDLSSPDGVGPWKLRCLAQTFATGEVSGRALIDIGSGPTIYQLL 88
Query: 315 SACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGNRVKGTEKEEKLR 494
SAC F++I TD+ + N QEL WL++EPGAFDWS +VC +EG EKE +LR
Sbjct: 89 SACAHFEDITMTDFLEVNRQELGLWLREEPGAFDWSVYSQHVCLIEGKGESCQEKERQLR 148
Query: 495 RAVKRVLKCDVTQSWPLGAVPLP--PADCLLSTLCLHAACPDLPTYRTALGNLRSLLKPG 668
VKR+L DV Q PLG L PAD L+S CL A PDL +++ AL ++ +LL+ G
Sbjct: 149 ARVKRILPIDVHQPQPLGTGSLAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRSG 208
Query: 669 GFLVLVDALKSSYYMIGEQRFS 734
G L+L+ AL+ S+Y+ GE R +
Sbjct: 209 GHLLLIGALEESWYLAGEARLA 230
>ref|XP_003361579.1| PREDICTED: indolethylamine N-methyltransferase-like [Sus scrofa].
Length = 217
Score = 139 bits (350), Expect = 2e-33
Identities = 94/245 (38%), Positives = 123/245 (50%)
Frame = +3
Query: 141 FNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLIDIGSGPTIYQLLSA 320
F+ QDYL+ YY F + AE++IL+ LK LF+ F GV GD+LIDIG+GPTIYQLLSA
Sbjct: 14 FDSQDYLKTYYTFDSGTVAENEILKFNLKNLFQTFSSGGVGGDILIDIGTGPTIYQLLSA 73
Query: 321 CESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGNRVKGTEKEEKLRRA 500
CE F+EII + E PG W EKE +LRR
Sbjct: 74 CEVFREIIXDEGARSGPGE-----SPLPGLSRWQ-----------------EKEARLRRT 111
Query: 501 VKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTALGNLRSLLKPGGFLV 680
V R+LKCDVT+ PLG + PADC+L+ L L AC D+ TYR A+ +LV
Sbjct: 112 VTRLLKCDVTEPHPLGPAQVLPADCVLTLLALECACHDVDTYRAAI----------XYLV 161
Query: 681 LVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQSYSSTMANNEGLFS 860
L Y++G + F L L T+E + SY+ T ++G+
Sbjct: 162 TAVTLGFQGYIVGNKNFFGLHLEKE-----------TVE--KAFPISYTETFCISKGMCF 208
Query: 861 LVGRK 875
V RK
Sbjct: 209 AVARK 213
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,328,355
Number of extensions: 667210
Number of successful extensions: 2811
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2805
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008175
(995 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035054.1| nicotinamide N-methyltransferase [Mus musculus]. 431 e-121
Alignment gi|NP_033375.1| indolethylamine N-methyltransferase [Mus muscul... 258 5e-69
Alignment gi|NP_032916.1| phenylethanolamine N-methyltransferase [Mus mus... 169 3e-42
>ref|NP_035054.1| nicotinamide N-methyltransferase [Mus musculus].
Length = 264
Score = 431 bits (1108), Expect = e-121
Identities = 212/259 (81%), Positives = 229/259 (88%)
Frame = +3
Query: 99 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 278
MESGFTSKD YLSHFNP+DYLEKYY+FG++H AE++ILRHLLK LFKIFCL VKG+LLI
Sbjct: 1 MESGFTSKDTYLSHFNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLI 60
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQLLSACESF EII +DYTDQNL EL+KWLKKEPGAFDWSPVVTYVC+LEGN
Sbjct: 61 DIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGN 120
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 638
R+KG EKEEKLRRA+K+VLKCDVTQS PLG V LPPADCLLSTLCL AACPDLP YRTAL
Sbjct: 121 RMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTAL 180
Query: 639 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQ 818
NL SLLKPGGFLV+VDALKSSYYMIGEQ+FSSL LG GYTIE FEVISQ
Sbjct: 181 RNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ 240
Query: 819 SYSSTMANNEGLFSLVGRK 875
+YSST +NNEGLFSLVGRK
Sbjct: 241 NYSSTTSNNEGLFSLVGRK 259
>ref|NP_033375.1| indolethylamine N-methyltransferase [Mus musculus].
Length = 264
Score = 258 bits (659), Expect = 5e-69
Identities = 129/249 (51%), Positives = 168/249 (67%)
Frame = +3
Query: 129 YLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLIDIGSGPTIYQ 308
Y F P+DYL YY+F + AE +I++ L+ L++ F GV GD+LIDIGSGPTIYQ
Sbjct: 12 YEKEFTPKDYLTTYYSFHSGPVAEQEIVKFSLQNLYQTFSTGGVGGDVLIDIGSGPTIYQ 71
Query: 309 LLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGNRVKGTEKEEK 488
LLSACE F+EII TDYT QNLQEL+KWLKKEPGA+DWS +V + CELEG+R + EKE K
Sbjct: 72 LLSACEVFREIIVTDYTPQNLQELQKWLKKEPGAYDWSSIVQHACELEGDRSRWQEKEAK 131
Query: 489 LRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTALGNLRSLLKPG 668
LRR V RVL+CDVT++ PLG+ +P ADC+L+ L + ACPD+ TYR AL L LLKPG
Sbjct: 132 LRRTVTRVLRCDVTKTPPLGSAQVPLADCVLTFLAMECACPDIDTYRAALRRLAGLLKPG 191
Query: 669 GFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQSYSSTMANNE 848
G LV + L+ +YM+G ++FS + L G + +S SYS +++
Sbjct: 192 GHLVTLVTLRFQHYMVGPKKFSGVYLEKEVVEKAIQDAGCQVLKCNCVSLSYSEAYCSHD 251
Query: 849 GLFSLVGRK 875
GL +V RK
Sbjct: 252 GLCFVVARK 260
>ref|NP_032916.1| phenylethanolamine N-methyltransferase [Mus musculus].
Length = 295
Score = 169 bits (428), Expect = 3e-42
Identities = 102/249 (40%), Positives = 139/249 (55%), Gaps = 5/249 (2%)
Frame = +3
Query: 63 GSGPQGTQEGDT-MESGFTSKDAYLSHFNPQDYLEKYYNFGAKH-SAEDQILRHLLKILF 236
GS P+ E D ++G + F P+ YL Y S D + L+ +
Sbjct: 14 GSDPKHAAEMDPDSDAGQVAVALAYQRFEPRAYLRNNYAPPRGDLSNPDGVGPWKLRCMA 73
Query: 237 KIFCLDGVKGDLLIDIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFD 416
++F V G +LIDIGSGPTIYQLLSAC F++I TD+ + N QEL WL++EPGAFD
Sbjct: 74 QVFATGEVSGRVLIDIGSGPTIYQLLSACAHFEDITMTDFLEVNRQELGLWLREEPGAFD 133
Query: 417 WSPVVTYVCELEGNRVKGTEKEEKLRRAVKRVLKCDVTQSWPLGA---VPLPPADCLLST 587
WS + C +E EKE +LR VKRVL DV + PLG VPL PAD L+S
Sbjct: 134 WSVYSQHACLIEDKGESWQEKERQLRARVKRVLPIDVHKPQPLGTPSLVPL-PADALVSA 192
Query: 588 LCLHAACPDLPTYRTALGNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXX 767
CL A PDL +++ AL ++ +LL+PGG L+L+ AL+ S+Y+ GE R S + +
Sbjct: 193 FCLEAVSPDLTSFQRALHHITTLLRPGGHLLLIGALEESWYLAGEARLSVVPVSEEEVRE 252
Query: 768 XXXXXGYTI 794
GY +
Sbjct: 253 ALVLGGYEV 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,540,612
Number of extensions: 871092
Number of successful extensions: 3600
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3583
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008175
(995 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006160.1| nicotinamide N-methyltransferase [Homo sapiens]. 445 e-125
Alignment gi|NP_006765.4| indolethylamine N-methyltransferase isoform 1 [... 258 6e-69
Alignment gi|NP_001186148.1| indolethylamine N-methyltransferase isoform ... 254 7e-68
Alignment gi|NP_002677.1| phenylethanolamine N-methyltransferase [Homo sa... 165 5e-41
>ref|NP_006160.1| nicotinamide N-methyltransferase [Homo sapiens].
Length = 264
Score = 445 bits (1144), Expect = e-125
Identities = 221/261 (84%), Positives = 234/261 (89%)
Frame = +3
Query: 99 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 278
MESGFTSKD YLSHFNP+DYLEKYY FG++HSAE QIL+HLLK LFKIFCLDGVKGDLLI
Sbjct: 1 MESGFTSKDTYLSHFNPRDYLEKYYKFGSRHSAESQILKHLLKNLFKIFCLDGVKGDLLI 60
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQLLSACESFKEI+ TDY+DQNLQELEKWLKKEP AFDWSPVVTYVC+LEGN
Sbjct: 61 DIGSGPTIYQLLSACESFKEIVVTDYSDQNLQELEKWLKKEPEAFDWSPVVTYVCDLEGN 120
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 638
RVKG EKEEKLR+AVK+VLKCDVTQS PLGAVPLPPADC+LSTLCL AACPDLPTY AL
Sbjct: 121 RVKGPEKEEKLRQAVKQVLKCDVTQSQPLGAVPLPPADCVLSTLCLDAACPDLPTYCRAL 180
Query: 639 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQ 818
NL SLLKPGGFLV++DALKSSYYMIGEQ+FSSL LG GYTIE FEVISQ
Sbjct: 181 RNLGSLLKPGGFLVIMDALKSSYYMIGEQKFSSLPLGREAVEAAVKEAGYTIEWFEVISQ 240
Query: 819 SYSSTMANNEGLFSLVGRKLS 881
SYSSTMANNEGLFSLV RKLS
Sbjct: 241 SYSSTMANNEGLFSLVARKLS 261
>ref|NP_006765.4| indolethylamine N-methyltransferase isoform 1 [Homo sapiens].
Length = 263
Score = 258 bits (659), Expect = 6e-69
Identities = 134/259 (51%), Positives = 167/259 (64%)
Frame = +3
Query: 99 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 278
M+ GFT D Y HF P+DYL YY+F S E ++L+ L+ L K F G++GD LI
Sbjct: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLI 60
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQ+L+AC+SF++I +D+TD+N +ELEKWLKKEPGA+DW+P V + CELEGN
Sbjct: 61 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 638
+ EKEEKLR AVKRVLKCDV PL LP ADC+L+ L + AC L YR AL
Sbjct: 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 180
Query: 639 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQ 818
NL SLLKPGG LV L+ YM+G++ FS + L G+ IE Q
Sbjct: 181 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ 240
Query: 819 SYSSTMANNEGLFSLVGRK 875
SYS T A N G+ +V RK
Sbjct: 241 SYSVTNAANNGVCFIVARK 259
>ref|NP_001186148.1| indolethylamine N-methyltransferase isoform 2 [Homo sapiens].
Length = 262
Score = 254 bits (650), Expect = 7e-68
Identities = 134/259 (51%), Positives = 167/259 (64%)
Frame = +3
Query: 99 MESGFTSKDAYLSHFNPQDYLEKYYNFGAKHSAEDQILRHLLKILFKIFCLDGVKGDLLI 278
M+ GFT D Y HF P+DYL YY+F S E ++L+ L+ L K F G++GD LI
Sbjct: 1 MKGGFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFG-PGLQGDTLI 59
Query: 279 DIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKEPGAFDWSPVVTYVCELEGN 458
DIGSGPTIYQ+L+AC+SF++I +D+TD+N +ELEKWLKKEPGA+DW+P V + CELEGN
Sbjct: 60 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 119
Query: 459 RVKGTEKEEKLRRAVKRVLKCDVTQSWPLGAVPLPPADCLLSTLCLHAACPDLPTYRTAL 638
+ EKEEKLR AVKRVLKCDV PL LP ADC+L+ L + AC L YR AL
Sbjct: 120 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 179
Query: 639 GNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXXXXXXXXXXXGYTIEHFEVISQ 818
NL SLLKPGG LV L+ YM+G++ FS + L G+ IE Q
Sbjct: 180 CNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKEEVEQAVLDAGFDIEQLLHSPQ 239
Query: 819 SYSSTMANNEGLFSLVGRK 875
SYS T A N G+ +V RK
Sbjct: 240 SYSVTNAANNGVCFIVARK 258
>ref|NP_002677.1| phenylethanolamine N-methyltransferase [Homo sapiens].
Length = 282
Score = 165 bits (418), Expect = 5e-41
Identities = 88/193 (45%), Positives = 120/193 (62%), Gaps = 2/193 (1%)
Frame = +3
Query: 222 LKILFKIFCLDGVKGDLLIDIGSGPTIYQLLSACESFKEIIATDYTDQNLQELEKWLKKE 401
L+ L + F V G LIDIGSGPT+YQLLSAC F++I TD+ + N QEL +WL++E
Sbjct: 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEE 117
Query: 402 PGAFDWSPVVTYVCELEGNRVKGTEKEEKLRRAVKRVLKCDVTQSWPLGA-VPLP-PADC 575
PGAF+WS + C +EG +KE +LR VKRVL DV Q PLGA P P PAD
Sbjct: 118 PGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADA 177
Query: 576 LLSTLCLHAACPDLPTYRTALGNLRSLLKPGGFLVLVDALKSSYYMIGEQRFSSLCLGXX 755
L+S CL A PDL +++ AL ++ +LL+PGG L+L+ AL+ S+Y+ GE R + + +
Sbjct: 178 LVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEE 237
Query: 756 XXXXXXXXXGYTI 794
GY +
Sbjct: 238 EVREALVRSGYKV 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,547,276
Number of extensions: 1041069
Number of successful extensions: 4400
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4383
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008175
(995 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 500 e-139
Sscrofa_Chr18 109 3e-21
gb|JH118806.1| Sus scrofa unplaced genomic scaffold ChrUScaf2560 62 6e-07
>Sscrofa_Chr09
|| Length = 153670197
Score = 500 bits (252), Expect = e-139
Identities = 252/252 (100%)
Strand = Plus / Plus
Query: 1 ggaattactgaaagccagagactcaggcaaagagtttctgcttctggtggagaggaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46628624 ggaattactgaaagccagagactcaggcaaagagtttctgcttctggtggagaggaaagg 46628683
Query: 61 agggcagtggacctcaggggactcaagagggagacacaatggaatctggcttcacctcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46628684 agggcagtggacctcaggggactcaagagggagacacaatggaatctggcttcacctcca 46628743
Query: 121 aggatgcttatctgagccattttaaccctcaggattacctagaaaaatattacaactttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46628744 aggatgcttatctgagccattttaaccctcaggattacctagaaaaatattacaactttg 46628803
Query: 181 gggccaaacactccgcagaagaccagattcttaggcatcttctgaaaatccttttcaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46628804 gggccaaacactccgcagaagaccagattcttaggcatcttctgaaaatccttttcaaga 46628863
Query: 241 tattttgcctag 252
||||||||||||
Sbjct: 46628864 tattttgcctag 46628875
Score = 416 bits (210), Expect = e-114
Identities = 210/210 (100%)
Strand = Plus / Plus
Query: 251 agatggtgtgaagggggacctcctgattgacatcggctctggccccaccatctatcagct 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46630672 agatggtgtgaagggggacctcctgattgacatcggctctggccccaccatctatcagct 46630731
Query: 311 cctctctgcttgtgagtctttcaaggagatcattgccaccgactacacggaccagaacct 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46630732 cctctctgcttgtgagtctttcaaggagatcattgccaccgactacacggaccagaacct 46630791
Query: 371 gcaggagctggagaagtggctgaagaaggagccaggggcctttgactggtccccagtggt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46630792 gcaggagctggagaagtggctgaagaaggagccaggggcctttgactggtccccagtggt 46630851
Query: 431 gacctatgtgtgtgagctcgaagggaacag 460
||||||||||||||||||||||||||||||
Sbjct: 46630852 gacctatgtgtgtgagctcgaagggaacag 46630881
Score = 149 bits (75), Expect = 3e-33
Identities = 131/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Minus
Query: 270 ctcctgattgacatcggctctggccccaccatctatcagctcctctctgcttgtgagtct 329
|||||||| |||||| ||||||||||||||||||||||||||||||| || || |||||
Sbjct: 46698723 ctcctgatggacatcagctctggccccaccatctatcagctcctctccgccagtaagtct 46698664
Query: 330 ttcaaggagatcattgccaccgactacacggaccagaacctg-caggagctggagaagtg 388
||| |||| ||||||||||| ||||||| || |||| | ||| |||||||||||||||||
Sbjct: 46698663 ttcgaggaaatcattgccactgactacatgg-ccaggaactgccaggagctggagaagtg 46698605
Query: 389 gctgaagaaggagccaggggcctttga 415
|||||| |||||||||| |||||||||
Sbjct: 46698604 gctgaaaaaggagccagaggcctttga 46698578
>Sscrofa_Chr18
|| Length = 61220071
Score = 109 bits (55), Expect = 3e-21
Identities = 136/163 (83%)
Strand = Plus / Plus
Query: 264 ggggacctcctgattgacatcggctctggccccaccatctatcagctcctctctgcttgt 323
|||||| ||||||||||||| ||| | |||||||||||||| ||||| ||||| || |||
Sbjct: 46639024 ggggacatcctgattgacattggcacaggccccaccatctaccagctgctctccgcctgt 46639083
Query: 324 gagtctttcaaggagatcattgccaccgactacacggaccagaacctgcaggagctggag 383
||| ||| ||||||||| | | |||||||||| ||||||||||| | ||| |||||
Sbjct: 46639084 gaggtcttccgggagatcatcgtctccgactacacagaccagaacctccgcgaggtggag 46639143
Query: 384 aagtggctgaagaaggagccaggggcctttgactggtccccag 426
|||||| ||||| ||||||| || |||| |||||||||||||
Sbjct: 46639144 aagtggttgaaggaggagccgggagcctacgactggtccccag 46639186
>gb|JH118806.1| Sus scrofa unplaced genomic scaffold ChrUScaf2560
Length = 31059
Score = 61.9 bits (31), Expect = 6e-07
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 264 ggggacctcctgattgacatcggctctggccccaccatctatcagctcctctctgcttgt 323
|||||| ||||||||||||| ||| | |||||||||||||| ||||| ||||| || |||
Sbjct: 26108 ggggacatcctgattgacattggcacaggccccaccatctaccagctgctctccgcctgt 26167
Query: 324 gag 326
|||
Sbjct: 26168 gag 26170
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,180,483
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 5
Length of query: 995
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 974
Effective length of database: 2,808,413,156
Effective search space: 2735394413944
Effective search space used: 2735394413944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)