Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008180
(1087 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093776.1| dickkopf-related protein 3 [Bos taurus]. 488 e-138
Alignment gi|XP_002698755.1| PREDICTED: dickkopf homolog 4-like [Bos taur... 69 7e-12
Alignment gi|XP_586277.3| PREDICTED: dickkopf homolog 4-like [Bos taurus]. 69 7e-12
Alignment gi|NP_001039934.1| dickkopf-like protein 1 [Bos taurus]. 58 2e-08
Alignment gi|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus]. 49 8e-06
Alignment gi|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus]. 49 8e-06
>ref|NP_001093776.1| dickkopf-related protein 3 [Bos taurus].
Length = 349
Score = 488 bits (1255), Expect = e-138
Identities = 225/258 (87%), Positives = 234/258 (90%)
Frame = +3
Query: 306 ESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPP 485
E G AL+YPQEEATLNEMFREVEELMEDTQ+KLRS K SSEV LAHLPP
Sbjct: 33 EPGPALSYPQEEATLNEMFREVEELMEDTQYKLRSAVEEMEAEEAAAKTSSEVTLAHLPP 92
Query: 486 TYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDED 665
+YHNETNTETK+GNNTI VHREIHKITNN+TGQMVFSETVITSMGD+E KRSHECIIDED
Sbjct: 93 SYHNETNTETKVGNNTIHVHREIHKITNNRTGQMVFSETVITSMGDEEGKRSHECIIDED 152
Query: 666 CGAGRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQR 845
CG RYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWG C+K +T G NGTICDNQR
Sbjct: 153 CGPSRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGRCTKTSTAGSNGTICDNQR 212
Query: 846 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL 1025
DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL
Sbjct: 213 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL 272
Query: 1026 CQPHSHSLVYVCQPTFVG 1079
CQPHSHSLVYVC+PTFVG
Sbjct: 273 CQPHSHSLVYVCKPTFVG 290
>ref|XP_002698755.1| PREDICTED: dickkopf homolog 4-like [Bos taurus].
Length = 216
Score = 68.9 bits (167), Expect = 7e-12
Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 47/204 (23%)
Frame = +3
Query: 594 SETVITSMGDDESKRSHECIIDEDCGAGRYC-QFSSFEYSCQPCRDQQTLCTRDSECCGD 770
S + +S G +++ +C+ D+DC A ++C Q + C CR + C + CC
Sbjct: 23 SNYIKSSSGAQRARKGSQCVSDKDCSARKFCLQRYDEKPFCATCRGPRRRCQLSTMCCPG 82
Query: 771 QLCVWGHCS--KAATKG----------------------GN-------------GTICDN 839
LC+ C+ + A KG GN G C
Sbjct: 83 TLCMNNFCTPVEEAAKGPEKGTDDKDNIDTEETTEHPTQGNSNTTKPQPRKRHRGERCLR 142
Query: 840 QRDCQPGLCCAFQRGLLFPVCTPLPVEGELC----HDPASRLLDLITWELEPDGALDRCP 1007
+C PGLCCA +C P+ +EG +C H+ + ++D+ RC
Sbjct: 143 DFNCGPGLCCAHH--YRTKICKPVLLEGHVCSRRGHNNNTHVVDI----------FQRCH 190
Query: 1008 CASGLLCQPHS-----HSLVYVCQ 1064
CA GL+CQ + H+ ++VCQ
Sbjct: 191 CAPGLVCQSQAAQDPVHTQLHVCQ 214
>ref|XP_586277.3| PREDICTED: dickkopf homolog 4-like [Bos taurus].
Length = 216
Score = 68.9 bits (167), Expect = 7e-12
Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 47/204 (23%)
Frame = +3
Query: 594 SETVITSMGDDESKRSHECIIDEDCGAGRYC-QFSSFEYSCQPCRDQQTLCTRDSECCGD 770
S + +S G +++ +C+ D+DC A ++C Q + C CR + C + CC
Sbjct: 23 SNYIKSSSGAQRARKGSQCVSDKDCSARKFCLQRYDEKPFCATCRGPRRRCQLSTMCCPG 82
Query: 771 QLCVWGHCS--KAATKG----------------------GN-------------GTICDN 839
LC+ C+ + A KG GN G C
Sbjct: 83 TLCMNNFCTPVEEAAKGPEKGTDDKDNIDTEETTEHPTQGNSNTTKPQPRKRHRGERCLR 142
Query: 840 QRDCQPGLCCAFQRGLLFPVCTPLPVEGELC----HDPASRLLDLITWELEPDGALDRCP 1007
+C PGLCCA +C P+ +EG +C H+ + ++D+ RC
Sbjct: 143 DFNCGPGLCCAHH--YRTKICKPVLLEGHVCSRRGHNNNTHVVDI----------FQRCH 190
Query: 1008 CASGLLCQPHS-----HSLVYVCQ 1064
CA GL+CQ + H+ ++VCQ
Sbjct: 191 CAPGLVCQSQAAQDPVHTQLHVCQ 214
>ref|NP_001039934.1| dickkopf-like protein 1 [Bos taurus].
Length = 233
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = +3
Query: 453 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDE 629
S+ ++ LP YH E N E ++GNNT+ H +I K+T+N+TG++V SE V+ S+ E
Sbjct: 64 SAPMDFRGLPRNYHQEENQERRLGNNTLSSHLQIDKVTDNKTGEVVISEKVVASIEPGE 122
>ref|XP_002695690.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 48.9 bits (115), Expect = 8e-06
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Frame = +3
Query: 639 SHECIIDEDCGAGRYCQFSSFEYSCQP------CRDQQTLCTRDSECCGDQLCVWGHCSK 800
S EC D DCG G+ C C P C +Q C D +C + CV C
Sbjct: 203 SRECSEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQ---CREDRDCAAGEKCVSNGCGH 259
Query: 801 AATKGGNGTICDNQ----RDCQPGLCCAFQRGLLFPVCTPLP 914
+ +IC+ Q RDC G C + VC+P P
Sbjct: 260 VCSPAPQASICEFQCFRDRDCGAGRQCVSEG--CNRVCSPAP 299
>ref|XP_593741.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 431
Score = 48.9 bits (115), Expect = 8e-06
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Frame = +3
Query: 639 SHECIIDEDCGAGRYCQFSSFEYSCQP------CRDQQTLCTRDSECCGDQLCVWGHCSK 800
S EC D DCG G+ C C P C +Q C D +C + CV C
Sbjct: 203 SRECSEDRDCGRGKQCVQDGCRRVCSPLMSVGVCVEQ---CREDRDCAAGEKCVSNGCGH 259
Query: 801 AATKGGNGTICDNQ----RDCQPGLCCAFQRGLLFPVCTPLP 914
+ +IC+ Q RDC G C + VC+P P
Sbjct: 260 VCSPAPQASICEFQCFRDRDCGAGRQCVSEG--CNRVCSPAP 299
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,660,103
Number of extensions: 1199446
Number of successful extensions: 9005
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8804
Number of HSP's successfully gapped: 8
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008180
(1087 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534060.2| PREDICTED: similar to Dickkopf related protein-... 418 e-117
Alignment gi|XP_851728.1| PREDICTED: similar to Dickkopf-like protein 1 p... 55 2e-07
>ref|XP_534060.2| PREDICTED: similar to Dickkopf related protein-3 precursor (Dkk-3)
(Dickkopf-3) (hDkk-3) [Canis familiaris].
Length = 277
Score = 418 bits (1075), Expect = e-117
Identities = 184/210 (87%), Positives = 200/210 (95%)
Frame = +3
Query: 453 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDES 632
+SEVNLA+LP +YHNETNTET++GNNTI VHREIHK+TNNQTG+ VFSETVITS+GD+E
Sbjct: 10 TSEVNLANLPSSYHNETNTETRVGNNTIHVHREIHKVTNNQTGRTVFSETVITSVGDEEG 69
Query: 633 KRSHECIIDEDCGAGRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATK 812
K+SHECIIDEDCG RYCQF+SFEY+CQ CRDQQTLCTRD ECCGDQLCVWGHC+K AT+
Sbjct: 70 KKSHECIIDEDCGPTRYCQFASFEYTCQSCRDQQTLCTRDGECCGDQLCVWGHCAKTATR 129
Query: 813 GGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGA 992
GGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGA
Sbjct: 130 GGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGA 189
Query: 993 LDRCPCASGLLCQPHSHSLVYVCQPTFVGS 1082
LDRCPCASGLLCQPHSHSLVYVC+P F+GS
Sbjct: 190 LDRCPCASGLLCQPHSHSLVYVCKPAFMGS 219
>ref|XP_851728.1| PREDICTED: similar to Dickkopf-like protein 1 precursor (Soggy-1
protein) (SGY-1) isoform 1 [Canis familiaris].
Length = 243
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/59 (38%), Positives = 39/59 (66%)
Frame = +3
Query: 453 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDE 629
S+ ++ LP YH E N E ++GNNT+ H +I K+T+N+TG+++ S+ V+ S+ E
Sbjct: 74 SAPMDFRGLPRNYHQEENQEHRLGNNTLSSHLQIDKVTDNKTGEVLISKQVVASIEPGE 132
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,334,216
Number of extensions: 1232861
Number of successful extensions: 9492
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9329
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008180
(1087 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034838.1| dickkopf-related protein 3 [Sus scrofa]. 529 e-151
>ref|NP_001034838.1| dickkopf-related protein 3 [Sus scrofa].
Length = 349
Score = 529 bits (1363), Expect = e-151
Identities = 253/291 (86%), Positives = 253/291 (86%)
Frame = +3
Query: 210 MRRLGSXXXXXXXXXXXXXXXXXXXXXXXXXXESGRALNYPQEEATLNEMFREVEELMED 389
MRRLGS ESGRALNYPQEEATLNEMFREVEELMED
Sbjct: 1 MRRLGSTLLCLLLAAAVPTAPAPAPTVTSAPVESGRALNYPQEEATLNEMFREVEELMED 60
Query: 390 TQHKLRSXXXXXXXXXXXXKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITN 569
TQHKLRS KISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITN
Sbjct: 61 TQHKLRSAVEEMEAEEAAAKISSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITN 120
Query: 570 NQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFSSFEYSCQPCRDQQTLCTR 749
NQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFSSFEYSCQPCRDQQTLCTR
Sbjct: 121 NQTGQMVFSETVITSMGDDESKRSHECIIDEDCGAGRYCQFSSFEYSCQPCRDQQTLCTR 180
Query: 750 DSECCGDQLCVWGHCSKAATKGGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGEL 929
DSECCGDQLCVWGHCSKAATKGGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGEL
Sbjct: 181 DSECCGDQLCVWGHCSKAATKGGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGEL 240
Query: 930 CHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGS 1082
CHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGS
Sbjct: 241 CHDPASRLLDLITWELEPDGALDRCPCASGLLCQPHSHSLVYVCQPTFVGS 291
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,646,399
Number of extensions: 775226
Number of successful extensions: 5903
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5796
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008180
(1087 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056629.1| dickkopf-related protein 3 precursor [Mus muscu... 475 e-134
Alignment gi|NP_056604.2| dickkopf-like protein 1 precursor [Mus musculus]. 53 5e-07
>ref|NP_056629.1| dickkopf-related protein 3 precursor [Mus musculus].
Length = 349
Score = 475 bits (1223), Expect = e-134
Identities = 215/259 (83%), Positives = 233/259 (89%)
Frame = +3
Query: 306 ESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPP 485
E G ALNYPQEEATLNEMFREVEELMEDTQHKLRS K SSEVNLA LPP
Sbjct: 33 EPGPALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKTSSEVNLASLPP 92
Query: 486 TYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDED 665
YHNET+TET++GNNT+ VH+E+HKITNNQ+GQ+VFSETVITS+GD+E KRSHECIIDED
Sbjct: 93 NYHNETSTETRVGNNTVHVHQEVHKITNNQSGQVVFSETVITSVGDEEGKRSHECIIDED 152
Query: 666 CGAGRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQR 845
CG RYCQFSSF+Y+CQPCRDQQ LCTRDSECCGDQLC WGHC++ ATKGGNGTICDNQR
Sbjct: 153 CGPTRYCQFSSFKYTCQPCRDQQMLCTRDSECCGDQLCAWGHCTQKATKGGNGTICDNQR 212
Query: 846 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL 1025
DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDP S+LLDLITWELEP+GALDRCPCASGLL
Sbjct: 213 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPTSQLLDLITWELEPEGALDRCPCASGLL 272
Query: 1026 CQPHSHSLVYVCQPTFVGS 1082
CQPHSHSLVY+C+P FVGS
Sbjct: 273 CQPHSHSLVYMCKPAFVGS 291
>ref|NP_056604.2| dickkopf-like protein 1 precursor [Mus musculus].
Length = 230
Score = 52.8 bits (125), Expect = 5e-07
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +3
Query: 453 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSM 617
SS ++ LP +H E N E ++GN+T+ H +I K+T+NQTG+++ SE V S+
Sbjct: 63 SSPMDFRDLPRNFHQEENQEHRMGNHTLSSHLQIDKVTDNQTGEVLISEKVEASI 117
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,982,674
Number of extensions: 990643
Number of successful extensions: 6722
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6573
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008180
(1087 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018067.1| dickkopf-related protein 3 precursor [Homo s... 480 e-135
Alignment gi|NP_037385.2| dickkopf-related protein 3 precursor [Homo sapi... 480 e-135
Alignment gi|NP_056965.3| dickkopf-related protein 3 precursor [Homo sapi... 480 e-135
Alignment gi|NP_055234.1| dickkopf-like protein 1 isoform 1 precursor [Ho... 55 1e-07
Alignment gi|NP_001184231.1| dickkopf-like protein 1 isoform 3 [Homo sapi... 54 3e-07
>ref|NP_001018067.1| dickkopf-related protein 3 precursor [Homo sapiens].
Length = 350
Score = 480 bits (1235), Expect = e-135
Identities = 219/257 (85%), Positives = 234/257 (91%)
Frame = +3
Query: 312 GRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPPTY 491
G AL+YPQEEATLNEMFREVEELMEDTQHKLRS K SSEVNLA+LPP+Y
Sbjct: 35 GPALSYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSY 94
Query: 492 HNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCG 671
HNETNT+TK+GNNTI VHREIHKITNNQTGQMVFSETVITS+GD+E +RSHECIIDEDCG
Sbjct: 95 HNETNTDTKVGNNTIHVHREIHKITNNQTGQMVFSETVITSVGDEEGRRSHECIIDEDCG 154
Query: 672 AGRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDC 851
YCQF+SF+Y+CQPCR Q+ LCTRDSECCGDQLCVWGHC+K AT+G NGTICDNQRDC
Sbjct: 155 PSMYCQFASFQYTCQPCRGQRMLCTRDSECCGDQLCVWGHCTKMATRGSNGTICDNQRDC 214
Query: 852 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 1031
QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ
Sbjct: 215 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 274
Query: 1032 PHSHSLVYVCQPTFVGS 1082
PHSHSLVYVC+PTFVGS
Sbjct: 275 PHSHSLVYVCKPTFVGS 291
>ref|NP_037385.2| dickkopf-related protein 3 precursor [Homo sapiens].
Length = 350
Score = 480 bits (1235), Expect = e-135
Identities = 219/257 (85%), Positives = 234/257 (91%)
Frame = +3
Query: 312 GRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPPTY 491
G AL+YPQEEATLNEMFREVEELMEDTQHKLRS K SSEVNLA+LPP+Y
Sbjct: 35 GPALSYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSY 94
Query: 492 HNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCG 671
HNETNT+TK+GNNTI VHREIHKITNNQTGQMVFSETVITS+GD+E +RSHECIIDEDCG
Sbjct: 95 HNETNTDTKVGNNTIHVHREIHKITNNQTGQMVFSETVITSVGDEEGRRSHECIIDEDCG 154
Query: 672 AGRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDC 851
YCQF+SF+Y+CQPCR Q+ LCTRDSECCGDQLCVWGHC+K AT+G NGTICDNQRDC
Sbjct: 155 PSMYCQFASFQYTCQPCRGQRMLCTRDSECCGDQLCVWGHCTKMATRGSNGTICDNQRDC 214
Query: 852 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 1031
QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ
Sbjct: 215 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 274
Query: 1032 PHSHSLVYVCQPTFVGS 1082
PHSHSLVYVC+PTFVGS
Sbjct: 275 PHSHSLVYVCKPTFVGS 291
>ref|NP_056965.3| dickkopf-related protein 3 precursor [Homo sapiens].
Length = 350
Score = 480 bits (1235), Expect = e-135
Identities = 219/257 (85%), Positives = 234/257 (91%)
Frame = +3
Query: 312 GRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPPTY 491
G AL+YPQEEATLNEMFREVEELMEDTQHKLRS K SSEVNLA+LPP+Y
Sbjct: 35 GPALSYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSY 94
Query: 492 HNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDEDCG 671
HNETNT+TK+GNNTI VHREIHKITNNQTGQMVFSETVITS+GD+E +RSHECIIDEDCG
Sbjct: 95 HNETNTDTKVGNNTIHVHREIHKITNNQTGQMVFSETVITSVGDEEGRRSHECIIDEDCG 154
Query: 672 AGRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDC 851
YCQF+SF+Y+CQPCR Q+ LCTRDSECCGDQLCVWGHC+K AT+G NGTICDNQRDC
Sbjct: 155 PSMYCQFASFQYTCQPCRGQRMLCTRDSECCGDQLCVWGHCTKMATRGSNGTICDNQRDC 214
Query: 852 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 1031
QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ
Sbjct: 215 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 274
Query: 1032 PHSHSLVYVCQPTFVGS 1082
PHSHSLVYVC+PTFVGS
Sbjct: 275 PHSHSLVYVCKPTFVGS 291
>ref|NP_055234.1| dickkopf-like protein 1 isoform 1 precursor [Homo sapiens].
Length = 242
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/55 (41%), Positives = 38/55 (69%)
Frame = +3
Query: 453 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSM 617
S+ ++ LP YH E N E ++GNNT+ H +I K+T+N+TG+++ SE V+ S+
Sbjct: 73 SAPMDFRGLPGNYHKEENQEHQLGNNTLSSHLQIDKMTDNKTGEVLISENVVASI 127
>ref|NP_001184231.1| dickkopf-like protein 1 isoform 3 [Homo sapiens].
Length = 167
Score = 53.9 bits (128), Expect = 3e-07
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +3
Query: 477 LPPTYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSM 617
LP YH E N E ++GNNT+ H +I K+T+N+TG+++ SE V+ S+
Sbjct: 6 LPGNYHKEENQEHQLGNNTLSSHLQIDKMTDNKTGEVLISENVVASI 52
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,459,164
Number of extensions: 1199106
Number of successful extensions: 8409
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8243
Number of HSP's successfully gapped: 5
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008180
(1087 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 488 e-135
>Sscrofa_Chr02
|| Length = 162569375
Score = 488 bits (246), Expect = e-135
Identities = 246/246 (100%)
Strand = Plus / Plus
Query: 177 ggcggcggcacccgcggcgggcgcagagcggagatgcggcggctcgggagcaccctgctg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50699985 ggcggcggcacccgcggcgggcgcagagcggagatgcggcggctcgggagcaccctgctg 50700044
Query: 237 tgcctgctgctggcggcggcggtccccacggcccccgccccggctccgacggtgacctcg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50700045 tgcctgctgctggcggcggcggtccccacggcccccgccccggctccgacggtgacctcg 50700104
Query: 297 gctccagttgagtcgggtcgggctctcaactacccgcaagaggaggccaccctcaacgag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50700105 gctccagttgagtcgggtcgggctctcaactacccgcaagaggaggccaccctcaacgag 50700164
Query: 357 atgttccgcgaggttgaggaactgatggaagacacgcagcacaaactgcgcagcgcggtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50700165 atgttccgcgaggttgaggaactgatggaagacacgcagcacaaactgcgcagcgcggtg 50700224
Query: 417 gaggag 422
||||||
Sbjct: 50700225 gaggag 50700230
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 1 ctggcgggcgggcggggcgagcgctgcgggctcgcccgggtaccagccctgccgcatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50699242 ctggcgggcgggcggggcgagcgctgcgggctcgcccgggtaccagccctgccgcatccc 50699301
Query: 61 cgccgctctcccagcactcgggcccagcccaccgcgccgctcctgctccgcagcccggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50699302 cgccgctctcccagcactcgggcccagcccaccgcgccgctcctgctccgcagcccggag 50699361
Query: 121 gcagcccccgccgaggcctggcagatccagacccgagcgcagcgcggtccatgctggg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50699362 gcagcccccgccgaggcctggcagatccagacccgagcgcagcgcggtccatgctggg 50699419
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 881 aggtctgctgtttcctgtgtgcacacccctgcccgtggagggcgagctctgccacgaccc 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50755925 aggtctgctgtttcctgtgtgcacacccctgcccgtggagggcgagctctgccacgaccc 50755984
Query: 941 tgccagccggcttctggacctcatcacctgggagctggagcctgatggagctttggaccg 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50755985 tgccagccggcttctggacctcatcacctgggagctggagcctgatggagctttggaccg 50756044
Query: 1001 atgcccgtgtgccagtggcctcctctgccagccccacag 1039
|||||||||||||||||||||||||||||||||||||||
Sbjct: 50756045 atgcccgtgtgccagtggcctcctctgccagccccacag 50756083
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 738 ctctgcacccgggacagtgagtgctgcggagaccagctgtgcgtctggggtcactgctcc 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50754538 ctctgcacccgggacagtgagtgctgcggagaccagctgtgcgtctggggtcactgctcc 50754597
Query: 798 aaagcagccaccaaaggcggcaatgggaccatctgtgacaaccagagggactgccagccg 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50754598 aaagcagccaccaaaggcggcaatgggaccatctgtgacaaccagagggactgccagccg 50754657
Query: 858 gggctgtgctgtgccttccagagaggt 884
|||||||||||||||||||||||||||
Sbjct: 50754658 gggctgtgctgtgccttccagagaggt 50754684
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 421 agatggaggcagaagaggctgcggctaaaatatcatcagaagtgaacctcgcgcacttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50708710 agatggaggcagaagaggctgcggctaaaatatcatcagaagtgaacctcgcgcacttac 50708769
Query: 481 cgcccacctatcacaatgagaccaacacggaaaccaagattggaaataataccatccaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50708770 cgcccacctatcacaatgagaccaacacggaaaccaagattggaaataataccatccaag 50708829
Query: 541 tccaccgggaaattcacaag 560
||||||||||||||||||||
Sbjct: 50708830 tccaccgggaaattcacaag 50708849
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 645 gagtgcatcattgatgaggactgcggggctggcaggtactgccagttttccagcttcgag 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50753340 gagtgcatcattgatgaggactgcggggctggcaggtactgccagttttccagcttcgag 50753399
Query: 705 tactcctgccagccgtgccgggaccagcagaca 737
|||||||||||||||||||||||||||||||||
Sbjct: 50753400 tactcctgccagccgtgccgggaccagcagaca 50753432
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 559 agatcaccaacaaccagactggacagatggttttttctgagacggtcattacgtcgatgg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50713425 agatcaccaacaaccagactggacagatggttttttctgagacggtcattacgtcgatgg 50713484
Query: 619 gagatgacgaaagcaaaaggagccacg 645
|||||||||||||||||||||||||||
Sbjct: 50713485 gagatgacgaaagcaaaaggagccacg 50713511
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 1037 cagccacagcctggtgtacgtgtgccagcccacctttgtcgggagcc 1083
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50756952 cagccacagcctggtgtacgtgtgccagcccacctttgtcgggagcc 50756998
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,980,387
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 8
Length of query: 1087
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1066
Effective length of database: 2,808,413,156
Effective search space: 2993768424296
Effective search space used: 2993768424296
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)