Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008181
(977 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093776.1| dickkopf-related protein 3 [Bos taurus]. 457 e-129
Alignment gi|XP_002698755.1| PREDICTED: dickkopf homolog 4-like [Bos taur... 64 2e-10
Alignment gi|XP_586277.3| PREDICTED: dickkopf homolog 4-like [Bos taurus]. 64 2e-10
Alignment gi|NP_001039934.1| dickkopf-like protein 1 [Bos taurus]. 58 1e-08
>ref|NP_001093776.1| dickkopf-related protein 3 [Bos taurus].
Length = 349
Score = 457 bits (1175), Expect = e-129
Identities = 211/243 (86%), Positives = 219/243 (90%)
Frame = +1
Query: 247 ESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPP 426
E G AL+YPQEEATLNEMFREVEELMEDTQ+KLRS K SSEV LAHLPP
Sbjct: 33 EPGPALSYPQEEATLNEMFREVEELMEDTQYKLRSAVEEMEAEEAAAKTSSEVTLAHLPP 92
Query: 427 TYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDESKRSHECIIDED 606
+YHNETNTETK+GNNTI VHREIHKITNNRTGQMVFSETVITSMGD+E KRSHECIIDED
Sbjct: 93 SYHNETNTETKVGNNTIHVHREIHKITNNRTGQMVFSETVITSMGDEEGKRSHECIIDED 152
Query: 607 CGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQR 786
CG RYCQF+SFEYSCQPCRDQQTLCTRDSECCGDQLCVWG C+K +T G NGTICDNQR
Sbjct: 153 CGPSRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGRCTKTSTAGSNGTICDNQR 212
Query: 787 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL 966
DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL
Sbjct: 213 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL 272
Query: 967 CQP 975
CQP
Sbjct: 273 CQP 275
>ref|XP_002698755.1| PREDICTED: dickkopf homolog 4-like [Bos taurus].
Length = 216
Score = 64.3 bits (155), Expect = 2e-10
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 42/188 (22%)
Frame = +1
Query: 535 SETVITSMGDDESKRSHECIIDEDCGAGRYC-QFASFEYSCQPCRDQQTLCTRDSECCGD 711
S + +S G +++ +C+ D+DC A ++C Q + C CR + C + CC
Sbjct: 23 SNYIKSSSGAQRARKGSQCVSDKDCSARKFCLQRYDEKPFCATCRGPRRRCQLSTMCCPG 82
Query: 712 QLCVWGHCS--KAATKG----------------------GN-------------GTICDN 780
LC+ C+ + A KG GN G C
Sbjct: 83 TLCMNNFCTPVEEAAKGPEKGTDDKDNIDTEETTEHPTQGNSNTTKPQPRKRHRGERCLR 142
Query: 781 QRDCQPGLCCAFQRGLLFPVCTPLPVEGELC----HDPASRLLDLITWELEPDGALDRCP 948
+C PGLCCA +C P+ +EG +C H+ + ++D+ RC
Sbjct: 143 DFNCGPGLCCAHH--YRTKICKPVLLEGHVCSRRGHNNNTHVVDI----------FQRCH 190
Query: 949 CASGLLCQ 972
CA GL+CQ
Sbjct: 191 CAPGLVCQ 198
>ref|XP_586277.3| PREDICTED: dickkopf homolog 4-like [Bos taurus].
Length = 216
Score = 64.3 bits (155), Expect = 2e-10
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 42/188 (22%)
Frame = +1
Query: 535 SETVITSMGDDESKRSHECIIDEDCGAGRYC-QFASFEYSCQPCRDQQTLCTRDSECCGD 711
S + +S G +++ +C+ D+DC A ++C Q + C CR + C + CC
Sbjct: 23 SNYIKSSSGAQRARKGSQCVSDKDCSARKFCLQRYDEKPFCATCRGPRRRCQLSTMCCPG 82
Query: 712 QLCVWGHCS--KAATKG----------------------GN-------------GTICDN 780
LC+ C+ + A KG GN G C
Sbjct: 83 TLCMNNFCTPVEEAAKGPEKGTDDKDNIDTEETTEHPTQGNSNTTKPQPRKRHRGERCLR 142
Query: 781 QRDCQPGLCCAFQRGLLFPVCTPLPVEGELC----HDPASRLLDLITWELEPDGALDRCP 948
+C PGLCCA +C P+ +EG +C H+ + ++D+ RC
Sbjct: 143 DFNCGPGLCCAHH--YRTKICKPVLLEGHVCSRRGHNNNTHVVDI----------FQRCH 190
Query: 949 CASGLLCQ 972
CA GL+CQ
Sbjct: 191 CAPGLVCQ 198
>ref|NP_001039934.1| dickkopf-like protein 1 [Bos taurus].
Length = 233
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = +1
Query: 394 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDE 570
S+ ++ LP YH E N E ++GNNT+ H +I K+T+N+TG++V SE V+ S+ E
Sbjct: 64 SAPMDFRGLPRNYHQEENQERRLGNNTLSSHLQIDKVTDNKTGEVVISEKVVASIEPGE 122
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,463,640
Number of extensions: 1129344
Number of successful extensions: 6434
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6355
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008181
(977 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534060.2| PREDICTED: similar to Dickkopf related protein-... 388 e-108
Alignment gi|XP_851728.1| PREDICTED: similar to Dickkopf-like protein 1 p... 55 1e-07
>ref|XP_534060.2| PREDICTED: similar to Dickkopf related protein-3 precursor (Dkk-3)
(Dickkopf-3) (hDkk-3) [Canis familiaris].
Length = 277
Score = 388 bits (997), Expect = e-108
Identities = 171/194 (88%), Positives = 185/194 (95%)
Frame = +1
Query: 394 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDES 573
+SEVNLA+LP +YHNETNTET++GNNTI VHREIHK+TNN+TG+ VFSETVITS+GD+E
Sbjct: 10 TSEVNLANLPSSYHNETNTETRVGNNTIHVHREIHKVTNNQTGRTVFSETVITSVGDEEG 69
Query: 574 KRSHECIIDEDCGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATK 753
K+SHECIIDEDCG RYCQFASFEY+CQ CRDQQTLCTRD ECCGDQLCVWGHC+K AT+
Sbjct: 70 KKSHECIIDEDCGPTRYCQFASFEYTCQSCRDQQTLCTRDGECCGDQLCVWGHCAKTATR 129
Query: 754 GGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGA 933
GGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGA
Sbjct: 130 GGNGTICDNQRDCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGA 189
Query: 934 LDRCPCASGLLCQP 975
LDRCPCASGLLCQP
Sbjct: 190 LDRCPCASGLLCQP 203
>ref|XP_851728.1| PREDICTED: similar to Dickkopf-like protein 1 precursor (Soggy-1
protein) (SGY-1) isoform 1 [Canis familiaris].
Length = 243
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/59 (38%), Positives = 39/59 (66%)
Frame = +1
Query: 394 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDE 570
S+ ++ LP YH E N E ++GNNT+ H +I K+T+N+TG+++ S+ V+ S+ E
Sbjct: 74 SAPMDFRGLPRNYHQEENQEHRLGNNTLSSHLQIDKVTDNKTGEVLISKQVVASIEPGE 132
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,984,825
Number of extensions: 1158243
Number of successful extensions: 6703
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6647
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008181
(977 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034838.1| dickkopf-related protein 3 [Sus scrofa]. 491 e-139
>ref|NP_001034838.1| dickkopf-related protein 3 [Sus scrofa].
Length = 349
Score = 491 bits (1264), Expect = e-139
Identities = 229/243 (94%), Positives = 231/243 (95%)
Frame = +1
Query: 247 ESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPP 426
ESGRALNYPQEEATLNEMFREVEELMEDTQHKLRS KISSEVNLAHLPP
Sbjct: 33 ESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKISSEVNLAHLPP 92
Query: 427 TYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDESKRSHECIIDED 606
TYHNETNTETKIGNNTIQVHREIHKITNN+TGQMVFSETVITSMGDDESKRSHECIIDED
Sbjct: 93 TYHNETNTETKIGNNTIQVHREIHKITNNQTGQMVFSETVITSMGDDESKRSHECIIDED 152
Query: 607 CGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQR 786
CGAGRYCQF+SFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQR
Sbjct: 153 CGAGRYCQFSSFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQR 212
Query: 787 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL 966
DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL
Sbjct: 213 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL 272
Query: 967 CQP 975
CQP
Sbjct: 273 CQP 275
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,580,894
Number of extensions: 729737
Number of successful extensions: 4262
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4219
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008181
(977 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056629.1| dickkopf-related protein 3 precursor [Mus muscu... 443 e-124
Alignment gi|NP_056604.2| dickkopf-like protein 1 precursor [Mus musculus]. 51 1e-06
>ref|NP_056629.1| dickkopf-related protein 3 precursor [Mus musculus].
Length = 349
Score = 443 bits (1139), Expect = e-124
Identities = 200/243 (82%), Positives = 218/243 (89%)
Frame = +1
Query: 247 ESGRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPP 426
E G ALNYPQEEATLNEMFREVEELMEDTQHKLRS K SSEVNLA LPP
Sbjct: 33 EPGPALNYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKTSSEVNLASLPP 92
Query: 427 TYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDESKRSHECIIDED 606
YHNET+TET++GNNT+ VH+E+HKITNN++GQ+VFSETVITS+GD+E KRSHECIIDED
Sbjct: 93 NYHNETSTETRVGNNTVHVHQEVHKITNNQSGQVVFSETVITSVGDEEGKRSHECIIDED 152
Query: 607 CGAGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQR 786
CG RYCQF+SF+Y+CQPCRDQQ LCTRDSECCGDQLC WGHC++ ATKGGNGTICDNQR
Sbjct: 153 CGPTRYCQFSSFKYTCQPCRDQQMLCTRDSECCGDQLCAWGHCTQKATKGGNGTICDNQR 212
Query: 787 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLL 966
DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDP S+LLDLITWELEP+GALDRCPCASGLL
Sbjct: 213 DCQPGLCCAFQRGLLFPVCTPLPVEGELCHDPTSQLLDLITWELEPEGALDRCPCASGLL 272
Query: 967 CQP 975
CQP
Sbjct: 273 CQP 275
>ref|NP_056604.2| dickkopf-like protein 1 precursor [Mus musculus].
Length = 230
Score = 51.2 bits (121), Expect = 1e-06
Identities = 22/55 (40%), Positives = 37/55 (67%)
Frame = +1
Query: 394 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSM 558
SS ++ LP +H E N E ++GN+T+ H +I K+T+N+TG+++ SE V S+
Sbjct: 63 SSPMDFRDLPRNFHQEENQEHRMGNHTLSSHLQIDKVTDNQTGEVLISEKVEASI 117
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,266,136
Number of extensions: 936244
Number of successful extensions: 5015
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4953
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008181
(977 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018067.1| dickkopf-related protein 3 precursor [Homo s... 447 e-126
Alignment gi|NP_037385.2| dickkopf-related protein 3 precursor [Homo sapi... 447 e-126
Alignment gi|NP_056965.3| dickkopf-related protein 3 precursor [Homo sapi... 447 e-126
Alignment gi|NP_055234.1| dickkopf-like protein 1 isoform 1 precursor [Ho... 55 7e-08
Alignment gi|NP_001184231.1| dickkopf-like protein 1 isoform 3 [Homo sapi... 54 2e-07
>ref|NP_001018067.1| dickkopf-related protein 3 precursor [Homo sapiens].
Length = 350
Score = 447 bits (1149), Expect = e-126
Identities = 204/241 (84%), Positives = 218/241 (90%)
Frame = +1
Query: 253 GRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPPTY 432
G AL+YPQEEATLNEMFREVEELMEDTQHKLRS K SSEVNLA+LPP+Y
Sbjct: 35 GPALSYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSY 94
Query: 433 HNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDESKRSHECIIDEDCG 612
HNETNT+TK+GNNTI VHREIHKITNN+TGQMVFSETVITS+GD+E +RSHECIIDEDCG
Sbjct: 95 HNETNTDTKVGNNTIHVHREIHKITNNQTGQMVFSETVITSVGDEEGRRSHECIIDEDCG 154
Query: 613 AGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDC 792
YCQFASF+Y+CQPCR Q+ LCTRDSECCGDQLCVWGHC+K AT+G NGTICDNQRDC
Sbjct: 155 PSMYCQFASFQYTCQPCRGQRMLCTRDSECCGDQLCVWGHCTKMATRGSNGTICDNQRDC 214
Query: 793 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 972
QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ
Sbjct: 215 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 274
Query: 973 P 975
P
Sbjct: 275 P 275
>ref|NP_037385.2| dickkopf-related protein 3 precursor [Homo sapiens].
Length = 350
Score = 447 bits (1149), Expect = e-126
Identities = 204/241 (84%), Positives = 218/241 (90%)
Frame = +1
Query: 253 GRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPPTY 432
G AL+YPQEEATLNEMFREVEELMEDTQHKLRS K SSEVNLA+LPP+Y
Sbjct: 35 GPALSYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSY 94
Query: 433 HNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDESKRSHECIIDEDCG 612
HNETNT+TK+GNNTI VHREIHKITNN+TGQMVFSETVITS+GD+E +RSHECIIDEDCG
Sbjct: 95 HNETNTDTKVGNNTIHVHREIHKITNNQTGQMVFSETVITSVGDEEGRRSHECIIDEDCG 154
Query: 613 AGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDC 792
YCQFASF+Y+CQPCR Q+ LCTRDSECCGDQLCVWGHC+K AT+G NGTICDNQRDC
Sbjct: 155 PSMYCQFASFQYTCQPCRGQRMLCTRDSECCGDQLCVWGHCTKMATRGSNGTICDNQRDC 214
Query: 793 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 972
QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ
Sbjct: 215 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 274
Query: 973 P 975
P
Sbjct: 275 P 275
>ref|NP_056965.3| dickkopf-related protein 3 precursor [Homo sapiens].
Length = 350
Score = 447 bits (1149), Expect = e-126
Identities = 204/241 (84%), Positives = 218/241 (90%)
Frame = +1
Query: 253 GRALNYPQEEATLNEMFREVEELMEDTQHKLRSXXXXXXXXXXXXKISSEVNLAHLPPTY 432
G AL+YPQEEATLNEMFREVEELMEDTQHKLRS K SSEVNLA+LPP+Y
Sbjct: 35 GPALSYPQEEATLNEMFREVEELMEDTQHKLRSAVEEMEAEEAAAKASSEVNLANLPPSY 94
Query: 433 HNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSMGDDESKRSHECIIDEDCG 612
HNETNT+TK+GNNTI VHREIHKITNN+TGQMVFSETVITS+GD+E +RSHECIIDEDCG
Sbjct: 95 HNETNTDTKVGNNTIHVHREIHKITNNQTGQMVFSETVITSVGDEEGRRSHECIIDEDCG 154
Query: 613 AGRYCQFASFEYSCQPCRDQQTLCTRDSECCGDQLCVWGHCSKAATKGGNGTICDNQRDC 792
YCQFASF+Y+CQPCR Q+ LCTRDSECCGDQLCVWGHC+K AT+G NGTICDNQRDC
Sbjct: 155 PSMYCQFASFQYTCQPCRGQRMLCTRDSECCGDQLCVWGHCTKMATRGSNGTICDNQRDC 214
Query: 793 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 972
QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ
Sbjct: 215 QPGLCCAFQRGLLFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCPCASGLLCQ 274
Query: 973 P 975
P
Sbjct: 275 P 275
>ref|NP_055234.1| dickkopf-like protein 1 isoform 1 precursor [Homo sapiens].
Length = 242
Score = 55.5 bits (132), Expect = 7e-08
Identities = 23/55 (41%), Positives = 38/55 (69%)
Frame = +1
Query: 394 SSEVNLAHLPPTYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSM 558
S+ ++ LP YH E N E ++GNNT+ H +I K+T+N+TG+++ SE V+ S+
Sbjct: 73 SAPMDFRGLPGNYHKEENQEHQLGNNTLSSHLQIDKMTDNKTGEVLISENVVASI 127
>ref|NP_001184231.1| dickkopf-like protein 1 isoform 3 [Homo sapiens].
Length = 167
Score = 54.3 bits (129), Expect = 2e-07
Identities = 22/47 (46%), Positives = 34/47 (72%)
Frame = +1
Query: 418 LPPTYHNETNTETKIGNNTIQVHREIHKITNNRTGQMVFSETVITSM 558
LP YH E N E ++GNNT+ H +I K+T+N+TG+++ SE V+ S+
Sbjct: 6 LPGNYHKEENQEHQLGNNTLSSHLQIDKMTDNKTGEVLISENVVASI 52
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,210,113
Number of extensions: 1127424
Number of successful extensions: 6043
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5971
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008181
(977 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 402 e-109
>Sscrofa_Chr02
|| Length = 162569375
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Plus
Query: 161 tcgggagcaccctgctgtgcctgctgctggcggcggcggtccccacggcccccgccccgg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50700028 tcgggagcaccctgctgtgcctgctgctggcggcggcggtccccacggcccccgccccgg 50700087
Query: 221 ctccgacggtgacctcggctccagttgagtcgggtcgggctctcaactacccgcaagagg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50700088 ctccgacggtgacctcggctccagttgagtcgggtcgggctctcaactacccgcaagagg 50700147
Query: 281 aggccaccctcaacgagatgttccgcgaggttgaggaactgatggaagacacgcagcaca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50700148 aggccaccctcaacgagatgttccgcgaggttgaggaactgatggaagacacgcagcaca 50700207
Query: 341 aactgcgcagcgcggtggaggag 363
|||||||||||||||||||||||
Sbjct: 50700208 aactgcgcagcgcggtggaggag 50700230
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 822 aggtctgctgtttcctgtgtgcacacccctgcccgtggagggcgagctctgccacgaccc 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50755925 aggtctgctgtttcctgtgtgcacacccctgcccgtggagggcgagctctgccacgaccc 50755984
Query: 882 tgccagccggcttctggacctcatcacctgggagctggagcctgatggagctttggaccg 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50755985 tgccagccggcttctggacctcatcacctgggagctggagcctgatggagctttggaccg 50756044
Query: 942 atgcccgtgtgccagtggcctcctctgccagcccca 977
||||||||||||||||||||||||||||||||||||
Sbjct: 50756045 atgcccgtgtgccagtggcctcctctgccagcccca 50756080
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 679 ctctgcacccgggacagtgagtgctgcggagaccagctgtgcgtctggggtcactgctcc 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50754538 ctctgcacccgggacagtgagtgctgcggagaccagctgtgcgtctggggtcactgctcc 50754597
Query: 739 aaagcagccaccaaaggcggcaatgggaccatctgtgacaaccagagggactgccagccg 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50754598 aaagcagccaccaaaggcggcaatgggaccatctgtgacaaccagagggactgccagccg 50754657
Query: 799 gggctgtgctgtgccttccagagaggt 825
|||||||||||||||||||||||||||
Sbjct: 50754658 gggctgtgctgtgccttccagagaggt 50754684
Score = 278 bits (140), Expect = 5e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 362 agatggaggcagaagaggctgcggctaaaatatcatcagaagtgaacctcgcgcacttac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50708710 agatggaggcagaagaggctgcggctaaaatatcatcagaagtgaacctcgcgcacttac 50708769
Query: 422 cgcccacctatcacaatgagaccaacacggaaaccaagattggaaataataccatccaag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50708770 cgcccacctatcacaatgagaccaacacggaaaccaagattggaaataataccatccaag 50708829
Query: 482 tccaccgggaaattcacaag 501
||||||||||||||||||||
Sbjct: 50708830 tccaccgggaaattcacaag 50708849
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ccgccgctctcccagcactcgggcccagcccaccgcgccgctcctgctccgcagcccgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50699301 ccgccgctctcccagcactcgggcccagcccaccgcgccgctcctgctccgcagcccgga 50699360
Query: 61 ggcagcccccgccgaggcctggcagatccagacccga 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 50699361 ggcagcccccgccgaggcctggcagatccagacccga 50699397
Score = 176 bits (89), Expect = 1e-41
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 586 gagtgcatcattgatgaggactgcggggctggcaggtactgccagtttgccagcttcgag 645
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 50753340 gagtgcatcattgatgaggactgcggggctggcaggtactgccagttttccagcttcgag 50753399
Query: 646 tactcctgccagccgtgccgggaccagcagaca 678
|||||||||||||||||||||||||||||||||
Sbjct: 50753400 tactcctgccagccgtgccgggaccagcagaca 50753432
Score = 165 bits (83), Expect = 6e-38
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 500 agatcaccaacaaccggactggacagatggttttttctgagacggtcattacgtcgatgg 559
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50713425 agatcaccaacaaccagactggacagatggttttttctgagacggtcattacgtcgatgg 50713484
Query: 560 gagatgacgaaagcaaaaggagccacg 586
|||||||||||||||||||||||||||
Sbjct: 50713485 gagatgacgaaagcaaaaggagccacg 50713511
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,895,286
Number of extensions: 166
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 7
Length of query: 977
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 956
Effective length of database: 2,808,413,156
Effective search space: 2684842977136
Effective search space used: 2684842977136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)