Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008182
(1233 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068801.1| protein GPR108 precursor [Bos taurus]. 582 e-166
Alignment gi|NP_001092634.1| protein GPR107 [Bos taurus]. 201 1e-51
Alignment gi|XP_002691201.1| PREDICTED: transmembrane protein 87B [Bos ta... 55 1e-07
Alignment gi|XP_875413.3| PREDICTED: transmembrane protein 87B [Bos tauru... 55 1e-07
>ref|NP_001068801.1| protein GPR108 precursor [Bos taurus].
Length = 548
Score = 582 bits (1500), Expect = e-166
Identities = 302/404 (74%), Positives = 324/404 (80%), Gaps = 1/404 (0%)
Frame = +2
Query: 23 MAVSERRGLARGRPAEWGQRXXXXXXXGGCSGRIHRLTLTGEKRADIQLNSFGFYTNGSL 202
MAVSERRGL RG PAEWG GG SGRIHRLTLTGEKRADIQLNSFGFYTNGSL
Sbjct: 1 MAVSERRGLGRGSPAEWGPWLLLLLLLGGSSGRIHRLTLTGEKRADIQLNSFGFYTNGSL 60
Query: 203 EVDLSLLRLGLQETEEKAPLVGFSLTXXXXXXXXXXXXXXXXDCPLHRNSSNLLVLFLIN 382
EV+LSLLRLG Q+TEEKAPLVGFSLT +CPL +NSS+LLVLFLIN
Sbjct: 61 EVNLSLLRLGRQDTEEKAPLVGFSLTRVRSGSIRSYSNRDSHECPLRKNSSSLLVLFLIN 120
Query: 383 TKDLQVQVRKYGEQKKLFISPGLLPEVPSKPGLPKSEHPDTPKVD-GGXXXXXXXXXXXX 559
TKDL+VQVRKYGEQKKLFIS GLLPE PSKPGLPKSEH TPKVD G
Sbjct: 121 TKDLEVQVRKYGEQKKLFISAGLLPESPSKPGLPKSEHMVTPKVDHAGTTAAPDKAKSKP 180
Query: 560 XVSQGDQQGINGKDQELVLGLGHLNNSYNFSFHVVIGSRAEEGQYNLNFHNCHNSVPGQE 739
QGD+QG++GKDQELVLGLGHLNNSYNFSFHVVIGSRAEEGQYNLNFHNC NSVPG+E
Sbjct: 181 TGLQGDRQGVSGKDQELVLGLGHLNNSYNFSFHVVIGSRAEEGQYNLNFHNCDNSVPGRE 240
Query: 740 QPFDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWL 919
QPFDITVMIREKNPEG+LSAAEIPLFKLYMVMSACFL AG+FWVS+LCKNTYNVFKIHWL
Sbjct: 241 QPFDITVMIREKNPEGYLSAAEIPLFKLYMVMSACFLGAGIFWVSILCKNTYNVFKIHWL 300
Query: 920 MAALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWGL 1099
MAAL FTKS+SLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGW
Sbjct: 301 MAALTFTKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAF 360
Query: 1100 RQVRPVRQGEEDLRDRDPTAGPSQRGLNRIESREEGASNHGIGK 1231
+ + ++ P + +ESREEGAS++GI K
Sbjct: 361 VKYVLSDKEKKIFGIVIPLQVLANVAYIVMESREEGASDYGIWK 404
>ref|NP_001092634.1| protein GPR107 [Bos taurus].
Length = 566
Score = 201 bits (511), Expect = 1e-51
Identities = 132/378 (34%), Positives = 199/378 (52%), Gaps = 6/378 (1%)
Frame = +2
Query: 116 GRIHRLTLTGEKRADIQLNSFGFYTNGSLEVDLSLLRLGLQE-TEEKAPLVGFSLTXXXX 292
GR+H L L + R + LN+FGF+ NG ++V++S L + + +K +GFSL
Sbjct: 39 GRVHHLALKDDVRHKVHLNTFGFFKNGYMKVNVSSLSVNEPKGATDKDFTIGFSLDRTKN 98
Query: 293 XXXXXXXXXXXXDCPLHRNSSNLLVLFLINTKDLQVQVRKYGEQKKLFISPGLLPEV--- 463
C L + S+++ +L L ++ +V++R E + LP++
Sbjct: 99 DGFSSYLDEDVNYCILKKQSASVTLLILDISRS-EVKIRSPPE------AGAQLPKIIFT 151
Query: 464 PSKPGLPKSEHPDTPKVDGGXXXXXXXXXXXXXVSQGDQQGINGKDQELVLGLGHLNNSY 643
+ + +S+ P V G S D + K + + + +
Sbjct: 152 KDEKVVGQSQEPGVNPVSSGSQAPKEQESGKSKRSTVDSKATGEKS----FSVHNNDGAV 207
Query: 644 NFSFHVVIGSRAEEGQYNLNFHNCHNSVPGQEQPFDIT--VMIREKNPEGFLSAAEIPLF 817
+F F I + +EG Y+L FH C S F + + I EKNP+ +LSA EIPL
Sbjct: 208 SFQFFFNISTDDQEGLYSLYFHKCLGSDAWSNDKFSFSLDIEITEKNPDSYLSAGEIPLP 267
Query: 818 KLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMAALAFTKSISLLFHSINYYFINSQG 997
KLY+ M+ F +G W+ +L K +VFKIHWLMAAL FTKS+SL+FH+I+Y++I+SQG
Sbjct: 268 KLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQG 327
Query: 998 HPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQVRPVRQGEEDLRDRDPTAGPSQRG 1177
PIEG AV++YITHLLKGALLFITIALIG+GW + + ++ P +
Sbjct: 328 FPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKVFMVVIPLQVLANVA 387
Query: 1178 LNRIESREEGASNHGIGK 1231
IES EEG + +G+ K
Sbjct: 388 YIIIESTEEGTTEYGLWK 405
>ref|XP_002691201.1| PREDICTED: transmembrane protein 87B [Bos taurus].
Length = 595
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/122 (24%), Positives = 59/122 (48%)
Frame = +2
Query: 746 FDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMA 925
+++ V + P G++SA++ PL YMVM ++ GV W+ ++ +I + +A
Sbjct: 234 WNLNVSLSMLGPYGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIA 293
Query: 926 ALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQ 1105
A+ F + Y INS G +GL + + +K L + + ++ G+G+ +
Sbjct: 294 AVIFLGMLEKAVFYAEYQNINSTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVK 353
Query: 1106 VR 1111
R
Sbjct: 354 PR 355
>ref|XP_875413.3| PREDICTED: transmembrane protein 87B [Bos taurus].
Length = 538
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/122 (24%), Positives = 59/122 (48%)
Frame = +2
Query: 746 FDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMA 925
+++ V + P G++SA++ PL YMVM ++ GV W+ ++ +I + +A
Sbjct: 177 WNLNVSLSMLGPYGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIA 236
Query: 926 ALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQ 1105
A+ F + Y INS G +GL + + +K L + + ++ G+G+ +
Sbjct: 237 AVIFLGMLEKAVFYAEYQNINSTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVK 296
Query: 1106 VR 1111
R
Sbjct: 297 PR 298
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,569,454
Number of extensions: 1137334
Number of successful extensions: 4761
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4727
Number of HSP's successfully gapped: 4
Length of query: 411
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,207,134
Effective search space: 4347383004
Effective search space used: 4347383004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008182
(1233 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533931.2| PREDICTED: similar to G protein-coupled recepto... 558 e-159
Alignment gi|XP_537814.2| PREDICTED: similar to G protein-coupled recepto... 199 5e-51
Alignment gi|XP_854588.1| PREDICTED: similar to CG17660-PA [Canis familia... 53 5e-07
>ref|XP_533931.2| PREDICTED: similar to G protein-coupled receptor 108 [Canis
familiaris].
Length = 593
Score = 558 bits (1439), Expect = e-159
Identities = 297/409 (72%), Positives = 322/409 (78%)
Frame = +2
Query: 5 EAVAPEMAVSERRGLARGRPAEWGQRXXXXXXXGGCSGRIHRLTLTGEKRADIQLNSFGF 184
EA APEMAVSERRGLAR PAEWGQR CSGRIHRL LTGEKRA+I LNSFGF
Sbjct: 53 EAAAPEMAVSERRGLARRSPAEWGQRLLLLLLLDSCSGRIHRLALTGEKRAEIPLNSFGF 112
Query: 185 YTNGSLEVDLSLLRLGLQETEEKAPLVGFSLTXXXXXXXXXXXXXXXXDCPLHRNSSNLL 364
Y NGSLEVDLSLLRLGL+ETEE+ PLVGFSLT +CPL +NSSNLL
Sbjct: 113 YANGSLEVDLSLLRLGLRETEEETPLVGFSLTRVQSGSIRSYSTPNPPNCPLRKNSSNLL 172
Query: 365 VLFLINTKDLQVQVRKYGEQKKLFISPGLLPEVPSKPGLPKSEHPDTPKVDGGXXXXXXX 544
VLFLINTKDL+VQVR+YG+QKKLFISPGLLPEVPS+PG PK E TPKV G
Sbjct: 173 VLFLINTKDLRVQVRRYGDQKKLFISPGLLPEVPSEPGPPKPELTVTPKVGSGTIAVLSK 232
Query: 545 XXXXXXVSQGDQQGINGKDQELVLGLGHLNNSYNFSFHVVIGSRAEEGQYNLNFHNCHNS 724
VSQGD +GKD ELVLGLGHLNNSYNFSFHVVIGSRAEEGQY+LNFHNC+NS
Sbjct: 233 AQSKPTVSQGD----HGKDSELVLGLGHLNNSYNFSFHVVIGSRAEEGQYSLNFHNCYNS 288
Query: 725 VPGQEQPFDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVF 904
PGQEQPFD+TVMIREKNPEGFLSAAEIPLFKLY+VMSACFLAAG+FWVSVLC+NTY VF
Sbjct: 289 EPGQEQPFDLTVMIREKNPEGFLSAAEIPLFKLYLVMSACFLAAGIFWVSVLCRNTYKVF 348
Query: 905 KIHWLMAALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIG 1084
KIHWLMAALAFTKSISLLFHSINYYFINSQGHPIEGLA+MHYITHL ALLFITIALIG
Sbjct: 349 KIHWLMAALAFTKSISLLFHSINYYFINSQGHPIEGLAIMHYITHL---ALLFITIALIG 405
Query: 1085 SGWGLRQVRPVRQGEEDLRDRDPTAGPSQRGLNRIESREEGASNHGIGK 1231
SGW V+ V +E + P Q L IE+REEG+S++ + K
Sbjct: 406 SGWAF--VKYVLSDKE--KKIFGIVIPLQVHLG-IEAREEGSSDYRLWK 449
>ref|XP_537814.2| PREDICTED: similar to G protein-coupled receptor 107 [Canis
familiaris].
Length = 610
Score = 199 bits (506), Expect = 5e-51
Identities = 132/378 (34%), Positives = 198/378 (52%), Gaps = 6/378 (1%)
Frame = +2
Query: 116 GRIHRLTLTGEKRADIQLNSFGFYTNGSLEVDLSLLRLGLQE-TEEKAPLVGFSLTXXXX 292
GR+H L L + R + LN+FGF+ +G + V++S L + +K +GFSL
Sbjct: 94 GRVHHLALKDDVRHKVHLNTFGFFKDGYMVVNVSSLSVNEPVGATDKDTTIGFSLDRTKN 153
Query: 293 XXXXXXXXXXXXDCPLHRNSSNLLVLFLINTKDLQVQVRKYGEQKKLFISPGLLPEV--- 463
C L + S ++ +L L ++ +V+VR E + LP++
Sbjct: 154 DGFSSYLDEDVNYCILKKQSVSVTLLILDISRS-EVRVRSPPE------AGTQLPKIVFS 206
Query: 464 PSKPGLPKSEHPDTPKVDGGXXXXXXXXXXXXXVSQGDQQGINGKDQELVLGLGHLNNSY 643
+ L +S+ P V G S D + K + + + +
Sbjct: 207 KDEKVLGQSQEPGANPVSAGNQTQLKPDSGKSKRSTVDSKATGEKS----FSVHNSDGAV 262
Query: 644 NFSFHVVIGSRAEEGQYNLNFHNCHNS--VPGQEQPFDITVMIREKNPEGFLSAAEIPLF 817
+F F I + +EG Y+L FH C + + + F + + I EKNP+ +LSA EIPL
Sbjct: 263 SFQFFFNISTDDQEGLYSLYFHKCSGNKVLSSDKFSFSLDIEITEKNPDSYLSAGEIPLP 322
Query: 818 KLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMAALAFTKSISLLFHSINYYFINSQG 997
KLY+ M+ F +G W+ +L K +VFKIHWLMAAL FTKS+SL+FH+I+Y++I+SQG
Sbjct: 323 KLYISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQG 382
Query: 998 HPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQVRPVRQGEEDLRDRDPTAGPSQRG 1177
PIEG AV++YITHLLKGALLFITIALIG+GW + + ++ P +
Sbjct: 383 FPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVA 442
Query: 1178 LNRIESREEGASNHGIGK 1231
IES EEG + +G+ K
Sbjct: 443 YIIIESTEEGTTEYGLWK 460
>ref|XP_854588.1| PREDICTED: similar to CG17660-PA [Canis familiaris].
Length = 556
Score = 53.1 bits (126), Expect = 5e-07
Identities = 29/122 (23%), Positives = 59/122 (48%)
Frame = +2
Query: 746 FDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMA 925
+++ V + P G++SA++ PL YMVM ++ GV W+ ++ +I + +A
Sbjct: 195 WNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIA 254
Query: 926 ALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQ 1105
A+ F + Y I+S G +GL + + +K L + + ++ G+G+ +
Sbjct: 255 AVIFLGMLEKAVFYTEYQNISSTGLSTQGLLIFAELISAVKRTLARLLVIIVSLGYGIVK 314
Query: 1106 VR 1111
R
Sbjct: 315 PR 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,638,112
Number of extensions: 1181632
Number of successful extensions: 5156
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5063
Number of HSP's successfully gapped: 3
Length of query: 411
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 306
Effective length of database: 15,374,224
Effective search space: 4704512544
Effective search space used: 4704512544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008182
(1233 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123184.2| PREDICTED: EGF-like module-containing mucin-... 159 4e-39
Alignment gi|XP_003124859.2| PREDICTED: transmembrane protein 87B [Sus sc... 55 6e-08
>ref|XP_003123184.2| PREDICTED: EGF-like module-containing mucin-like hormone
receptor-like 1 [Sus scrofa].
Length = 924
Score = 159 bits (401), Expect = 4e-39
Identities = 80/87 (91%), Positives = 80/87 (91%)
Frame = +2
Query: 5 EAVAPEMAVSERRGLARGRPAEWGQRXXXXXXXGGCSGRIHRLTLTGEKRADIQLNSFGF 184
EAVAPEMAVSERRGLARGRPAEWGQR GGCSGRIHRLTLTGEKRADIQLNSFGF
Sbjct: 25 EAVAPEMAVSERRGLARGRPAEWGQRLFLLLLLGGCSGRIHRLTLTGEKRADIQLNSFGF 84
Query: 185 YTNGSLEVDLSLLRLGLQETEEKAPLV 265
YTNGSLEVDLSLLRLGLQETEEKAPLV
Sbjct: 85 YTNGSLEVDLSLLRLGLQETEEKAPLV 111
>ref|XP_003124859.2| PREDICTED: transmembrane protein 87B [Sus scrofa].
Length = 529
Score = 55.5 bits (132), Expect = 6e-08
Identities = 30/122 (24%), Positives = 59/122 (48%)
Frame = +2
Query: 746 FDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMA 925
+++ V + P G++SA++ PL YMVM ++ GV W+ ++ +I + +A
Sbjct: 189 WNLNVSLSMMGPHGYISASDWPLMIFYMVMCIVYILYGVLWLMWSACYWKDILRIQFWIA 248
Query: 926 ALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQ 1105
A+ F + Y INS G +GL + + +K L + + ++ G+G+ +
Sbjct: 249 AVIFLGMLEKAVFYAEYQNINSTGLSTQGLLIFAELISSVKRTLARLLVIIVSLGYGIVK 308
Query: 1106 VR 1111
R
Sbjct: 309 PR 310
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,176,673
Number of extensions: 739143
Number of successful extensions: 3082
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3072
Number of HSP's successfully gapped: 2
Length of query: 411
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,829,335
Effective search space: 2737093850
Effective search space used: 2737093850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008182
(1233 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084360.2| protein GPR108 precursor [Mus musculus]. 513 e-146
Alignment gi|NP_848875.2| protein GPR107 precursor [Mus musculus]. 209 4e-54
Alignment gi|NP_082524.2| transmembrane protein 87B precursor [Mus muscul... 57 4e-08
>ref|NP_084360.2| protein GPR108 precursor [Mus musculus].
Length = 569
Score = 513 bits (1322), Expect = e-146
Identities = 278/427 (65%), Positives = 311/427 (72%), Gaps = 24/427 (5%)
Frame = +2
Query: 23 MAVSERRGLARGRPAE--WGQRXXXXXXXGGCSGRIHRLTLTGEKRADIQLNSFGFYTNG 196
MAVSERRGL+ P + WG GCSGRIHRLTLTGEKRADIQLNSFGFYTNG
Sbjct: 1 MAVSERRGLSGESPTQCRWGYLSLLVLTLSGCSGRIHRLTLTGEKRADIQLNSFGFYTNG 60
Query: 197 SLEVDLSLLRLGLQETEEKAPLVGFSLTXXXXXXXXXXXXXXXXDCPLHRNSSNLLVLFL 376
SLEV+LSLLRL LQETE+K P VGFSL+ +CPL RNSSN LVLFL
Sbjct: 61 SLEVELSLLRLSLQETEKKLPKVGFSLSRVRSGSVRSYSRRNSHECPLDRNSSNFLVLFL 120
Query: 377 INTKDLQVQVRKYGEQKKLFISPGLLPEVPSKPGLPKSEHPDTPKVDGGXXXXXXXXXXX 556
IN KDLQVQVRKYGEQK LFISPGLLPE P++ G PK + TPK D
Sbjct: 121 INIKDLQVQVRKYGEQK-LFISPGLLPEAPTQSGPPKPDPAGTPK-DNHVIHPSPTEMSA 178
Query: 557 XXVSQ------GDQ----------------QGINGKDQELVLGLGHLNNSYNFSFHVVIG 670
+Q GD+ Q +GK+++ VLGLGHLN+SYNFSFH+VI
Sbjct: 179 VKENQTAPQVSGDKTTPGEHRHSSERQPPTQDPSGKEKDQVLGLGHLNDSYNFSFHIVIS 238
Query: 671 SRAEEGQYNLNFHNCHNSVPGQEQPFDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFL 850
SRAEEGQY+LNFHNCHNS+PGQEQPFD+TVMIREKNPEGFLSAAEIPLFKLY++MSACFL
Sbjct: 239 SRAEEGQYSLNFHNCHNSIPGQEQPFDLTVMIREKNPEGFLSAAEIPLFKLYLIMSACFL 298
Query: 851 AAGVFWVSVLCKNTYNVFKIHWLMAALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHY 1030
AA +FWVSVLCKNTY+VFKIHWLMAALAFTKS+SLLFHSINYYFINSQGHPIEGLAVMHY
Sbjct: 299 AADIFWVSVLCKNTYSVFKIHWLMAALAFTKSVSLLFHSINYYFINSQGHPIEGLAVMHY 358
Query: 1031 ITHLLKGALLFITIALIGSGWGLRQVRPVRQGEEDLRDRDPTAGPSQRGLNRIESREEGA 1210
ITHLLKGALLFITIALIGSGW + + ++ P + IESREEGA
Sbjct: 359 ITHLLKGALLFITIALIGSGWAFVKYMLSDKEKKIFGIVIPLQVLANVAYIVIESREEGA 418
Query: 1211 SNHGIGK 1231
S++G+ K
Sbjct: 419 SDYGLWK 425
>ref|NP_848875.2| protein GPR107 precursor [Mus musculus].
Length = 551
Score = 209 bits (532), Expect = 4e-54
Identities = 137/379 (36%), Positives = 198/379 (52%), Gaps = 7/379 (1%)
Frame = +2
Query: 116 GRIHRLTLTGEKRADIQLNSFGFYTNGSLEVDLSLLRLGLQE-TEEKAPLVGFSLTXXXX 292
GR+H L L + R + LN+FGF+ +G + V++S L + E +K +GFSL
Sbjct: 33 GRVHHLALKDDVRHKVHLNTFGFFKDGYMVVNVSSLSVNEPEGATDKDAEIGFSLDRTKN 92
Query: 293 XXXXXXXXXXXXDCPLHRNSSNLLVLFLINTKDLQVQVRKYGEQKKLFISPGLLPEV--- 463
C L + S + + L +++ V+VR E K LPE+
Sbjct: 93 DGFSSYLDEDVNYCILKKKSMSSVTLVILDISGSIVKVRSPPEAGKQ------LPEIVFS 146
Query: 464 PSKPGLPKSEHPDTPKVDGGXXXXXXXXXXXXXVSQGDQQGINGKDQELVLGLGHLNNSY 643
+ L +S+ P S D + I + + H N+
Sbjct: 147 KDEKILSQSQEPAVSSNPKDSEARRTLDGFKAGRSTVDSKAITERSFSI-----HKNDGV 201
Query: 644 -NFSFHVVIGSRAEEGQYNLNFHNC--HNSVPGQEQPFDITVMIREKNPEGFLSAAEIPL 814
+F F I + +EG Y+L FH C +N PG++ F + + I EKNP +LSA EIPL
Sbjct: 202 VSFQFFFNISTDDQEGLYSLYFHKCSGNNVKPGEQASFSLNIAITEKNPNSYLSAGEIPL 261
Query: 815 FKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMAALAFTKSISLLFHSINYYFINSQ 994
KLY+ M+ F +G W+ +L K +VFKIHWLMAAL FTKS+SL+FH+I+Y++I+SQ
Sbjct: 262 PKLYVSMALFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQ 321
Query: 995 GHPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQVRPVRQGEEDLRDRDPTAGPSQR 1174
G PIEG AV++YITHLLKGALLFITIALIG+GW + + ++ P +
Sbjct: 322 GFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANV 381
Query: 1175 GLNRIESREEGASNHGIGK 1231
IES EEG + +G+ K
Sbjct: 382 AYIIIESTEEGTTEYGLWK 400
>ref|NP_082524.2| transmembrane protein 87B precursor [Mus musculus].
Length = 555
Score = 56.6 bits (135), Expect = 4e-08
Identities = 31/122 (25%), Positives = 59/122 (48%)
Frame = +2
Query: 746 FDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMA 925
+D+ V + P G++SA++ PL YMVM ++ GV W+ ++ +I + +A
Sbjct: 195 WDLNVSLSMVGPHGYISASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQFWIA 254
Query: 926 ALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQ 1105
A+ F + Y INS G +GL + + +K L + + ++ G+G+ +
Sbjct: 255 AVIFLGMLEKAVFYSEYQNINSTGLSTQGLLIFAELISAVKRTLARLLVIIVSLGYGIVK 314
Query: 1106 VR 1111
R
Sbjct: 315 PR 316
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,496,127
Number of extensions: 946825
Number of successful extensions: 4030
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3990
Number of HSP's successfully gapped: 3
Length of query: 411
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 307
Effective length of database: 12,493,815
Effective search space: 3835601205
Effective search space used: 3835601205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008182
(1233 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073921.1| protein GPR108 [Homo sapiens]. 546 e-155
Alignment gi|NP_001130030.1| protein GPR107 isoform 2 [Homo sapiens]. 207 2e-53
Alignment gi|NP_001130029.1| protein GPR107 isoform 1 [Homo sapiens]. 207 2e-53
Alignment gi|NP_066011.2| protein GPR107 isoform 3 [Homo sapiens]. 207 2e-53
Alignment gi|NP_116213.1| transmembrane protein 87B precursor [Homo sapie... 52 9e-07
>ref|NP_001073921.1| protein GPR108 [Homo sapiens].
Length = 543
Score = 546 bits (1407), Expect = e-155
Identities = 284/403 (70%), Positives = 315/403 (78%)
Frame = +2
Query: 23 MAVSERRGLARGRPAEWGQRXXXXXXXGGCSGRIHRLTLTGEKRADIQLNSFGFYTNGSL 202
MAVSERRGL RG PAEWGQR GGCSGRIH+L LTGEKRADIQLNSFGFYTNGSL
Sbjct: 1 MAVSERRGLGRGSPAEWGQRLLLVLLLGGCSGRIHQLALTGEKRADIQLNSFGFYTNGSL 60
Query: 203 EVDLSLLRLGLQETEEKAPLVGFSLTXXXXXXXXXXXXXXXXDCPLHRNSSNLLVLFLIN 382
EV+LS+LRLGL+E EEK+ LVGFSL+ DCPL +NSS+ LVLFLIN
Sbjct: 61 EVELSVLRLGLREAEEKSLLVGFSLSRVRSGRVRSYSTRDFQDCPLQKNSSSFLVLFLIN 120
Query: 383 TKDLQVQVRKYGEQKKLFISPGLLPEVPSKPGLPKSEHPDTPKVDGGXXXXXXXXXXXXX 562
TKDLQVQVRKYGEQK LFI PGLLPE PSKPGLPK + KVDGG
Sbjct: 121 TKDLQVQVRKYGEQKTLFIFPGLLPEAPSKPGLPKPQATVPRKVDGGGTSAASKPKSTPA 180
Query: 563 VSQGDQQGINGKDQELVLGLGHLNNSYNFSFHVVIGSRAEEGQYNLNFHNCHNSVPGQEQ 742
V QG +GKD++LVLGL HLNNSYNFSFHVVIGS+AEEGQY+LNFHNC+NSVPG+E
Sbjct: 181 VIQGP----SGKDKDLVLGLSHLNNSYNFSFHVVIGSQAEEGQYSLNFHNCNNSVPGKEH 236
Query: 743 PFDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLM 922
PFDITVMIREKNP+GFLSAAE+PLFKLYMVMSACFLAAG+FWVS+LC+NTY+VFKIHWLM
Sbjct: 237 PFDITVMIREKNPDGFLSAAEMPLFKLYMVMSACFLAAGIFWVSILCRNTYSVFKIHWLM 296
Query: 923 AALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWGLR 1102
AALAFTKSISLLFHSINYYFINSQGHPIEGLAVM+YI HLLKGALLFITIALIGSGW
Sbjct: 297 AALAFTKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFI 356
Query: 1103 QVRPVRQGEEDLRDRDPTAGPSQRGLNRIESREEGASNHGIGK 1231
+ + ++ P + IESREEGAS++ + K
Sbjct: 357 KYVLSDKEKKVFGIVIPMQVLANVAYIIIESREEGASDYVLWK 399
>ref|NP_001130030.1| protein GPR107 isoform 2 [Homo sapiens].
Length = 571
Score = 207 bits (526), Expect = 2e-53
Identities = 134/376 (35%), Positives = 200/376 (53%), Gaps = 4/376 (1%)
Frame = +2
Query: 116 GRIHRLTLTGEKRADIQLNSFGFYTNGSLEVDLSLLRLGLQETEEKAPLVGFSLTXXXXX 295
GR+H L L + R + LN+FGF+ +G + V++S L L E E+K +GFSL
Sbjct: 39 GRVHHLALKDDVRHKVHLNTFGFFKDGYMVVNVS--SLSLNEPEDKDVTIGFSLDRTKND 96
Query: 296 XXXXXXXXXXXDCPLHRNSSNLLVLFLINTKDLQVQVRKYGEQKKLFISPGLLPEV---P 466
C L + S ++ +L L ++ +V+V+ E + LP++
Sbjct: 97 GFSSYLDEDVNYCILKKQSVSVTLLILDISRS-EVRVKSPPE------AGTQLPKIIFSR 149
Query: 467 SKPGLPKSEHPDTPKVDGGXXXXXXXXXXXXXVSQGDQQGINGKDQELVLGLGHLNNSYN 646
+ L +S+ P+ G S D + + K + + + +
Sbjct: 150 DEKVLGQSQEPNVNPASAGNQTQKTQDGGKSKRSTVDSKAMGEKS----FSVHNNGGAVS 205
Query: 647 FSFHVVIGSRAEEGQYNLNFHNC-HNSVPGQEQPFDITVMIREKNPEGFLSAAEIPLFKL 823
F F I + +EG Y+L FH C +P + F + + I EKNP+ +LSA EIPL KL
Sbjct: 206 FQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTFSLDIEITEKNPDSYLSAGEIPLPKL 265
Query: 824 YMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMAALAFTKSISLLFHSINYYFINSQGHP 1003
Y+ M+ F +G W+ +L K +VFKIHWLMAAL FTKS+SL+FH+I+Y++I+SQG P
Sbjct: 266 YISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFP 325
Query: 1004 IEGLAVMHYITHLLKGALLFITIALIGSGWGLRQVRPVRQGEEDLRDRDPTAGPSQRGLN 1183
IEG AV++YITHLLKGALLFITIALIG+GW + + ++ P +
Sbjct: 326 IEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYI 385
Query: 1184 RIESREEGASNHGIGK 1231
IES EEG + +G+ K
Sbjct: 386 IIESTEEGTTEYGLWK 401
>ref|NP_001130029.1| protein GPR107 isoform 1 [Homo sapiens].
Length = 600
Score = 207 bits (526), Expect = 2e-53
Identities = 134/376 (35%), Positives = 200/376 (53%), Gaps = 4/376 (1%)
Frame = +2
Query: 116 GRIHRLTLTGEKRADIQLNSFGFYTNGSLEVDLSLLRLGLQETEEKAPLVGFSLTXXXXX 295
GR+H L L + R + LN+FGF+ +G + V++S L L E E+K +GFSL
Sbjct: 39 GRVHHLALKDDVRHKVHLNTFGFFKDGYMVVNVS--SLSLNEPEDKDVTIGFSLDRTKND 96
Query: 296 XXXXXXXXXXXDCPLHRNSSNLLVLFLINTKDLQVQVRKYGEQKKLFISPGLLPEV---P 466
C L + S ++ +L L ++ +V+V+ E + LP++
Sbjct: 97 GFSSYLDEDVNYCILKKQSVSVTLLILDISRS-EVRVKSPPE------AGTQLPKIIFSR 149
Query: 467 SKPGLPKSEHPDTPKVDGGXXXXXXXXXXXXXVSQGDQQGINGKDQELVLGLGHLNNSYN 646
+ L +S+ P+ G S D + + K + + + +
Sbjct: 150 DEKVLGQSQEPNVNPASAGNQTQKTQDGGKSKRSTVDSKAMGEKS----FSVHNNGGAVS 205
Query: 647 FSFHVVIGSRAEEGQYNLNFHNC-HNSVPGQEQPFDITVMIREKNPEGFLSAAEIPLFKL 823
F F I + +EG Y+L FH C +P + F + + I EKNP+ +LSA EIPL KL
Sbjct: 206 FQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTFSLDIEITEKNPDSYLSAGEIPLPKL 265
Query: 824 YMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMAALAFTKSISLLFHSINYYFINSQGHP 1003
Y+ M+ F +G W+ +L K +VFKIHWLMAAL FTKS+SL+FH+I+Y++I+SQG P
Sbjct: 266 YISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFP 325
Query: 1004 IEGLAVMHYITHLLKGALLFITIALIGSGWGLRQVRPVRQGEEDLRDRDPTAGPSQRGLN 1183
IEG AV++YITHLLKGALLFITIALIG+GW + + ++ P +
Sbjct: 326 IEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYI 385
Query: 1184 RIESREEGASNHGIGK 1231
IES EEG + +G+ K
Sbjct: 386 IIESTEEGTTEYGLWK 401
>ref|NP_066011.2| protein GPR107 isoform 3 [Homo sapiens].
Length = 552
Score = 207 bits (526), Expect = 2e-53
Identities = 134/376 (35%), Positives = 200/376 (53%), Gaps = 4/376 (1%)
Frame = +2
Query: 116 GRIHRLTLTGEKRADIQLNSFGFYTNGSLEVDLSLLRLGLQETEEKAPLVGFSLTXXXXX 295
GR+H L L + R + LN+FGF+ +G + V++S L L E E+K +GFSL
Sbjct: 39 GRVHHLALKDDVRHKVHLNTFGFFKDGYMVVNVS--SLSLNEPEDKDVTIGFSLDRTKND 96
Query: 296 XXXXXXXXXXXDCPLHRNSSNLLVLFLINTKDLQVQVRKYGEQKKLFISPGLLPEV---P 466
C L + S ++ +L L ++ +V+V+ E + LP++
Sbjct: 97 GFSSYLDEDVNYCILKKQSVSVTLLILDISRS-EVRVKSPPE------AGTQLPKIIFSR 149
Query: 467 SKPGLPKSEHPDTPKVDGGXXXXXXXXXXXXXVSQGDQQGINGKDQELVLGLGHLNNSYN 646
+ L +S+ P+ G S D + + K + + + +
Sbjct: 150 DEKVLGQSQEPNVNPASAGNQTQKTQDGGKSKRSTVDSKAMGEKS----FSVHNNGGAVS 205
Query: 647 FSFHVVIGSRAEEGQYNLNFHNC-HNSVPGQEQPFDITVMIREKNPEGFLSAAEIPLFKL 823
F F I + +EG Y+L FH C +P + F + + I EKNP+ +LSA EIPL KL
Sbjct: 206 FQFFFNISTDDQEGLYSLYFHKCLGKELPSDKFTFSLDIEITEKNPDSYLSAGEIPLPKL 265
Query: 824 YMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMAALAFTKSISLLFHSINYYFINSQGHP 1003
Y+ M+ F +G W+ +L K +VFKIHWLMAAL FTKS+SL+FH+I+Y++I+SQG P
Sbjct: 266 YISMAFFFFLSGTIWIHILRKRRNDVFKIHWLMAALPFTKSLSLVFHAIDYHYISSQGFP 325
Query: 1004 IEGLAVMHYITHLLKGALLFITIALIGSGWGLRQVRPVRQGEEDLRDRDPTAGPSQRGLN 1183
IEG AV++YITHLLKGALLFITIALIG+GW + + ++ P +
Sbjct: 326 IEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYI 385
Query: 1184 RIESREEGASNHGIGK 1231
IES EEG + +G+ K
Sbjct: 386 IIESTEEGTTEYGLWK 401
>ref|NP_116213.1| transmembrane protein 87B precursor [Homo sapiens].
Length = 555
Score = 52.4 bits (124), Expect = 9e-07
Identities = 27/122 (22%), Positives = 60/122 (49%)
Frame = +2
Query: 746 FDITVMIREKNPEGFLSAAEIPLFKLYMVMSACFLAAGVFWVSVLCKNTYNVFKIHWLMA 925
+++ V + P G++SA++ PL YMVM ++ G+ W++ ++ +I + +A
Sbjct: 194 WNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWIA 253
Query: 926 ALAFTKSISLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWGLRQ 1105
A+ F + Y I++ G +GL + + +K L + + ++ G+G+ +
Sbjct: 254 AVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVK 313
Query: 1106 VR 1111
R
Sbjct: 314 PR 315
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,590,783
Number of extensions: 1147016
Number of successful extensions: 4832
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4766
Number of HSP's successfully gapped: 5
Length of query: 411
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,835,944
Effective search space: 4539798864
Effective search space used: 4539798864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008182
(1233 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 280 2e-72
>Sscrofa_Chr02
|| Length = 162569375
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 3 gggaggcggtggctccagagatggcagtgagcgagaggagggggctcgcccgcgggagac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72697638 gggaggcggtggctccagagatggcagtgagcgagaggagggggctcgcccgcgggagac 72697697
Query: 63 ccgcggagtggggccagcggctctttctgctgctgctgttaggaggctgctctgggcgca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72697698 ccgcggagtggggccagcggctctttctgctgctgctgttaggaggctgctctgggcgca 72697757
Query: 123 tccaccggctgacgctgacgg 143
|||||||||||||||||||||
Sbjct: 72697758 tccaccggctgacgctgacgg 72697778
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 3 gggaggcggtggctccagagatggcagtgagcgagaggagggggctcgcccgcgggagac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72750437 gggaggcggtggctccagagatggcagtgagcgagaggagggggctcgcccgcgggagac 72750496
Query: 63 ccgcggagtggggccagcggctctttctgctgctgctgttaggaggctgctctgggcgca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72750497 ccgcggagtggggccagcggctctttctgctgctgctgttaggaggctgctctgggcgca 72750556
Query: 123 tccaccggctgacgctgacgg 143
|||||||||||||||||||||
Sbjct: 72750557 tccaccggctgacgctgacgg 72750577
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 397 ggtccaggtgcggaagtatggagagcagaagaagctgttcatctctcctgggctccttcc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72753934 ggtccaggtgcggaagtatggagagcagaagaagctgttcatctctcctgggctccttcc 72753993
Query: 457 agaagtgccctccaaaccagggctcccaaaatcagagcacccggatacccctaaggtgga 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72753994 agaagtgccctccaaaccagggctcccaaaatcagagcacccggatacccctaaggtgga 72754053
Query: 517 tggtgg 522
||||||
Sbjct: 72754054 tggtgg 72754059
Score = 250 bits (126), Expect = 2e-63
Identities = 136/138 (98%), Gaps = 1/138 (0%)
Strand = Plus / Plus
Query: 757 ggtcatgatccgggagaagaacccggagggtttcctgtcggcagcggaaatccccctctt 816
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 72755109 ggtcatgatccgggagaagaacccggagggtttcctgtcggcagcgaaaatccccctctt 72755168
Query: 817 caagctgtacatggtcatgtccgcctgcttcctggccgccggtgtcttctgggtgtctgt 876
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 72755169 caagctgtacatggtcatgtccgcctgcttcctgg-cgccggtgtcttctgggtgtctgt 72755227
Query: 877 cctctgcaagaacacgta 894
||||||||||||||||||
Sbjct: 72755228 cctctgcaagaacacgta 72755245
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 142 gggggagaagcgagccgacatccagctgaacagctttggcttctacaccaacggctctct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72698535 gggggagaagcgagccgacatccagctgaacagctttggcttctacaccaacggctctct 72698594
Query: 202 ggaggtagacctgagcctcctgcggctgggcctccaggagacagaagagaaagctccgct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72698595 ggaggtagacctgagcctcctgcggctgggcctccaggagacagaagagaaagctccgct 72698654
Query: 262 ggtg 265
||||
Sbjct: 72698655 ggtg 72698658
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 142 gggggagaagcgagccgacatccagctgaacagctttggcttctacaccaacggctctct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72751496 gggggagaagcgagccgacatccagctgaacagctttggcttctacaccaacggctctct 72751555
Query: 202 ggaggtagacctgagcctcctgcggctgggcctccaggagacagaagagaaagctccgct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72751556 ggaggtagacctgagcctcctgcggctgggcctccaggagacagaagagaaagctccgct 72751615
Query: 262 ggtg 265
||||
Sbjct: 72751616 ggtg 72751619
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 653 ttccatgtggtgatcggctctagggccgaggaaggccagtacaacctcaacttccacaac 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72754498 ttccatgtggtgatcggctctagggccgaggaaggccagtacaacctcaacttccacaac 72754557
Query: 713 tgccacaactccgtgccaggccaggagcaaccattcgacatcacggt 759
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72754558 tgccacaactccgtgccaggccaggagcaaccattcgacatcacggt 72754604
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 314 agccagcactcccacgactgccctctccatagaaacagcagcaacctcctggttctcttc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72752921 agccagcactcccacgactgccctctccatagaaacagcagcaacctcctggttctcttc 72752980
Query: 374 ctcatcaacaccaaggatctgcag 397
||||||||||||||||||||||||
Sbjct: 72752981 ctcatcaacaccaaggatctgcag 72753004
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 581 cagggcatcaatgggaaggaccaggaactggtgttgggcctgggccatctcaacaactcc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72754325 cagggcatcaatgggaaggaccaggaactggtgttgggcctgggccatctcaacaactcc 72754384
Query: 641 tacaatttcagt 652
||||||||||||
Sbjct: 72754385 tacaatttcagt 72754396
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 521 gggaccaccactgcgcccgacaaggccaaggcaacacccacagtgtcccaaggagaccag 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72754182 gggaccaccactgcgcccgacaaggccaaggcaacacccacagtgtcccaaggagaccag 72754241
Query: 581 cagg 584
||||
Sbjct: 72754242 cagg 72754245
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 262 ggtggggttcagtctgacccgagttcgatctggcagtgttcgctcctactca 313
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72752674 ggtggggttcagtctgacccgagttcgatctggcagtgttcgctcctactca 72752725
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,392,207
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 11
Length of query: 1233
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1212
Effective length of database: 2,808,413,156
Effective search space: 3403796745072
Effective search space used: 3403796745072
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)