Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008187
(1339 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098491.1| phenylalanyl-tRNA synthetase, beta subunit [... 657 0.0
Alignment gi|NP_001095768.1| leucine-rich repeat-containing protein 47 [B... 104 2e-22
>ref|NP_001098491.1| phenylalanyl-tRNA synthetase, beta subunit [Bos taurus].
Length = 589
Score = 657 bits (1696), Expect(3) = 0.0
Identities = 325/354 (91%), Positives = 336/354 (94%)
Frame = +3
Query: 36 MPTVSVKRDVLFRALGRTYTNEEFDELCFEFGLELDXXXXXXXXXXXXQGNEKAQGASDV 215
MPTVSVKRD+LFRALGRTYT+EEFDELCFEFGLELD QGNEKA GASDV
Sbjct: 1 MPTVSVKRDLLFRALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNEKAHGASDV 60
Query: 216 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPMYKRVMPNGEIQKLIITEETAKIRPY 395
VLYKIDVPANRYDLLCLEGLVRGLQVFKERIK PMYKRVMP GEIQKLIITEETAKIRPY
Sbjct: 61 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKTPMYKRVMPKGEIQKLIITEETAKIRPY 120
Query: 396 AVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKKPAD 575
AVAAVLRN+KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKKP+D
Sbjct: 121 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKKPSD 180
Query: 576 IKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGN 755
IKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDS GVVLSMPPIINGN
Sbjct: 181 IKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSKGVVLSMPPIINGN 240
Query: 756 HSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEVVFPNGKLHTFP 935
HSKITVNT+NVFIECTGTDFTKAKIVLD IVT FSEYC+NQFTVEAAEVVFPNGKLHTFP
Sbjct: 241 HSKITVNTKNVFIECTGTDFTKAKIVLDVIVTTFSEYCENQFTVEAAEVVFPNGKLHTFP 300
Query: 936 ELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEIEVPPT 1097
ELAYRKE+VRADLINKK+GIRETPENLAKLLTRMCLKSEVIGDG+QIE+E+PPT
Sbjct: 301 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMCLKSEVIGDGNQIEVEIPPT 354
Score = 76.3 bits (186), Expect(3) = 0.0
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 1088 PSDRADIIHACDIIEDAAIAYGDIHIQMTLPKTYTIANQFPL 1213
P RADIIHACDIIEDAAIAYG +IQMTLPKTYTIANQFPL
Sbjct: 352 PPTRADIIHACDIIEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Score = 27.3 bits (59), Expect(3) = 0.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 1207 PPNKFTELLRHDMXXXXXXXXXXXXXCSQE 1296
P NK TELLR DM CSQE
Sbjct: 392 PLNKLTELLRQDMAAAGFTEALTFALCSQE 421
>ref|NP_001095768.1| leucine-rich repeat-containing protein 47 [Bos taurus].
Length = 581
Score = 104 bits (260), Expect = 2e-22
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 15/191 (7%)
Frame = +3
Query: 372 ETAKIRPYAVAAVLRNMKFTK-DRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPF 548
E +RP+ V AV+R M + F+ Q KLH+++C KR + I THDL + GP
Sbjct: 326 EVRDVRPFFVGAVVRGMDLRPGNALKRFLSCQTKLHEDLCEKRTVATIATHDLGAVRGPL 385
Query: 549 TYTAKKPADIKFKPLNKSKEYTACELMNIYKTDNQ-------------LKHYLHIIENKP 689
Y A+ P D K PL + +E A +L+ + + + L YLH+++ K
Sbjct: 386 LYAARPPQDFKIIPLGR-REVKAKDLVRQLQLEAEEHRKQKKRQNVSGLHRYLHLLDGKE 444
Query: 690 LYPVIYDSNGVVLSMPPIINGNHSKITVNTRNVFIECT-GTDFTKAKIVLDTIVTMFSEY 866
YP + D++G V+S PPI N +KI T ++F+E T K ++D ++ +E
Sbjct: 445 HYPCLVDADGDVISFPPITNSEKTKIKKTTSDLFLEVTSAASLQICKDIMDALILKMAEI 504
Query: 867 CDNQFTVEAAE 899
N++T+E E
Sbjct: 505 --NKYTLENRE 513
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,447,048
Number of extensions: 1037643
Number of successful extensions: 2193
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2192
Number of HSP's successfully gapped: 4
Length of query: 446
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 341
Effective length of database: 14,207,134
Effective search space: 4844632694
Effective search space used: 4844632694
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008187
(1339 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864045.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 645 0.0
Alignment gi|XP_536085.2| PREDICTED: similar to Phenylalanyl-tRNA synthet... 645 0.0
Alignment gi|XP_864028.1| PREDICTED: similar to Phenylalanyl-tRNA synthet... 463 e-148
Alignment gi|XP_546742.2| PREDICTED: similar to Y54E10A.6 [Canis familiar... 110 4e-24
>ref|XP_864045.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase beta chain
(Phenylalanine--tRNA ligase beta chain) (PheRS) isoform 3
[Canis familiaris].
Length = 607
Score = 645 bits (1665), Expect(3) = 0.0
Identities = 319/354 (90%), Positives = 335/354 (94%)
Frame = +3
Query: 36 MPTVSVKRDVLFRALGRTYTNEEFDELCFEFGLELDXXXXXXXXXXXXQGNEKAQGASDV 215
MPTVSVKRD+LF+ALGR YT+EEFDELCFEFGLELD QGNEKA+GASDV
Sbjct: 1 MPTVSVKRDLLFQALGRNYTDEEFDELCFEFGLELDEITSEKEIISKEQGNEKAEGASDV 60
Query: 216 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPMYKRVMPNGEIQKLIITEETAKIRPY 395
VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAP+YKRV PNGEIQKLIITEETAKIRPY
Sbjct: 61 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVTPNGEIQKLIITEETAKIRPY 120
Query: 396 AVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKKPAD 575
AVAAVLRN+KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAK+P+D
Sbjct: 121 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD 180
Query: 576 IKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGN 755
IKFKPLNK+KEYTACELMNIYKTDN LKHYLHIIENKPLYPVIYDSNGVVLSMPP+INGN
Sbjct: 181 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPVINGN 240
Query: 756 HSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEVVFPNGKLHTFP 935
HSKITVNTRNVFIECTGTDFTKAKIVLD IVTMFSEYC+NQF VEAAEVVFPNGK +TFP
Sbjct: 241 HSKITVNTRNVFIECTGTDFTKAKIVLDVIVTMFSEYCENQFMVEAAEVVFPNGKSYTFP 300
Query: 936 ELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEIEVPPT 1097
ELAYRKEIVRADLINKK+GIRETPEN+AKLLTRM LKSEVIGDG+QIEIE+PPT
Sbjct: 301 ELAYRKEIVRADLINKKVGIRETPENIAKLLTRMYLKSEVIGDGNQIEIEIPPT 354
Score = 75.9 bits (185), Expect(3) = 0.0
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +2
Query: 1088 PSDRADIIHACDIIEDAAIAYGDIHIQMTLPKTYTIANQFPL 1213
P RADIIHACDI+EDAAIAYG +IQMTLPKTYTIANQFPL
Sbjct: 352 PPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Score = 27.3 bits (59), Expect(3) = 0.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 1207 PPNKFTELLRHDMXXXXXXXXXXXXXCSQE 1296
P NK TELLR DM CSQE
Sbjct: 392 PLNKLTELLRQDMAAAGFTEALTFALCSQE 421
>ref|XP_536085.2| PREDICTED: similar to Phenylalanyl-tRNA synthetase beta chain
(Phenylalanine--tRNA ligase beta chain) (PheRS) isoform 1
[Canis familiaris].
Length = 589
Score = 645 bits (1665), Expect(3) = 0.0
Identities = 319/354 (90%), Positives = 335/354 (94%)
Frame = +3
Query: 36 MPTVSVKRDVLFRALGRTYTNEEFDELCFEFGLELDXXXXXXXXXXXXQGNEKAQGASDV 215
MPTVSVKRD+LF+ALGR YT+EEFDELCFEFGLELD QGNEKA+GASDV
Sbjct: 1 MPTVSVKRDLLFQALGRNYTDEEFDELCFEFGLELDEITSEKEIISKEQGNEKAEGASDV 60
Query: 216 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPMYKRVMPNGEIQKLIITEETAKIRPY 395
VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAP+YKRV PNGEIQKLIITEETAKIRPY
Sbjct: 61 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVTPNGEIQKLIITEETAKIRPY 120
Query: 396 AVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKKPAD 575
AVAAVLRN+KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAK+P+D
Sbjct: 121 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD 180
Query: 576 IKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGN 755
IKFKPLNK+KEYTACELMNIYKTDN LKHYLHIIENKPLYPVIYDSNGVVLSMPP+INGN
Sbjct: 181 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPVINGN 240
Query: 756 HSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEVVFPNGKLHTFP 935
HSKITVNTRNVFIECTGTDFTKAKIVLD IVTMFSEYC+NQF VEAAEVVFPNGK +TFP
Sbjct: 241 HSKITVNTRNVFIECTGTDFTKAKIVLDVIVTMFSEYCENQFMVEAAEVVFPNGKSYTFP 300
Query: 936 ELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEIEVPPT 1097
ELAYRKEIVRADLINKK+GIRETPEN+AKLLTRM LKSEVIGDG+QIEIE+PPT
Sbjct: 301 ELAYRKEIVRADLINKKVGIRETPENIAKLLTRMYLKSEVIGDGNQIEIEIPPT 354
Score = 75.9 bits (185), Expect(3) = 0.0
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +2
Query: 1088 PSDRADIIHACDIIEDAAIAYGDIHIQMTLPKTYTIANQFPL 1213
P RADIIHACDI+EDAAIAYG +IQMTLPKTYTIANQFPL
Sbjct: 352 PPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Score = 27.3 bits (59), Expect(3) = 0.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 1207 PPNKFTELLRHDMXXXXXXXXXXXXXCSQE 1296
P NK TELLR DM CSQE
Sbjct: 392 PLNKLTELLRQDMAAAGFTEALTFALCSQE 421
>ref|XP_864028.1| PREDICTED: similar to Phenylalanyl-tRNA synthetase beta chain
(Phenylalanine--tRNA ligase beta chain) (PheRS) isoform 2
[Canis familiaris].
Length = 491
Score = 463 bits (1191), Expect(3) = e-148
Identities = 225/245 (91%), Positives = 238/245 (97%)
Frame = +3
Query: 363 ITEETAKIRPYAVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSG 542
+ +TAKIRPYAVAAVLRN+KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSG
Sbjct: 12 LQRKTAKIRPYAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSG 71
Query: 543 PFTYTAKKPADIKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGV 722
PFTYTAK+P+DIKFKPLNK+KEYTACELMNIYKTDN LKHYLHIIENKPLYPVIYDSNGV
Sbjct: 72 PFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGV 131
Query: 723 VLSMPPIINGNHSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEV 902
VLSMPP+INGNHSKITVNTRNVFIECTGTDFTKAKIVLD IVTMFSEYC+NQF VEAAEV
Sbjct: 132 VLSMPPVINGNHSKITVNTRNVFIECTGTDFTKAKIVLDVIVTMFSEYCENQFMVEAAEV 191
Query: 903 VFPNGKLHTFPELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEI 1082
VFPNGK +TFPELAYRKEIVRADLINKK+GIRETPEN+AKLLTRM LKSEVIGDG+QIEI
Sbjct: 192 VFPNGKSYTFPELAYRKEIVRADLINKKVGIRETPENIAKLLTRMYLKSEVIGDGNQIEI 251
Query: 1083 EVPPT 1097
E+PPT
Sbjct: 252 EIPPT 256
Score = 75.9 bits (185), Expect(3) = e-148
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +2
Query: 1088 PSDRADIIHACDIIEDAAIAYGDIHIQMTLPKTYTIANQFPL 1213
P RADIIHACDI+EDAAIAYG +IQMTLPKTYTIANQFPL
Sbjct: 254 PPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 295
Score = 27.3 bits (59), Expect(3) = e-148
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 1207 PPNKFTELLRHDMXXXXXXXXXXXXXCSQE 1296
P NK TELLR DM CSQE
Sbjct: 294 PLNKLTELLRQDMAAAGFTEALTFALCSQE 323
>ref|XP_546742.2| PREDICTED: similar to Y54E10A.6 [Canis familiaris].
Length = 589
Score = 110 bits (274), Expect = 4e-24
Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 15/187 (8%)
Frame = +3
Query: 384 IRPYAVAAVLRNMKFTK-DRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTA 560
+RP+ V AV+R M + F+ Q KLH++IC KR I THDL + GP YTA
Sbjct: 338 VRPFIVGAVVRGMDLQAGNALRRFLTSQTKLHEDICEKRTAATIATHDLRAVRGPLVYTA 397
Query: 561 KKPADIKFKPLNKSKEYTACELMNIYKTDNQ-------------LKHYLHIIENKPLYPV 701
+ P D+K PL + KE A +L+ + + + L YLH+++ K YP
Sbjct: 398 RPPQDLKIVPLGR-KEVKAKDLVRQLQLEAEEHRKQKKRQNVSGLHRYLHLLDGKENYPC 456
Query: 702 IYDSNGVVLSMPPIINGNHSKITVNTRNVFIECT-GTDFTKAKIVLDTIVTMFSEYCDNQ 878
+ D++G V+S PPI N +KI T ++F+E T T K ++D +V +E N+
Sbjct: 457 LVDADGDVISFPPITNSEKTKIKKTTSDLFLEVTSATSLQTCKEIMDALVLKMAEI--NK 514
Query: 879 FTVEAAE 899
+T+E E
Sbjct: 515 YTLENKE 521
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,331,212
Number of extensions: 1067039
Number of successful extensions: 2334
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2333
Number of HSP's successfully gapped: 13
Length of query: 446
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 340
Effective length of database: 15,340,888
Effective search space: 5215901920
Effective search space used: 5215901920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008187
(1339 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133727.2| PREDICTED: phenylalanyl-tRNA synthetase beta... 486 e-157
Alignment gi|XP_003356179.1| PREDICTED: leucine-rich repeat-containing pr... 91 1e-18
>ref|XP_003133727.2| PREDICTED: phenylalanyl-tRNA synthetase beta chain-like [Sus scrofa].
Length = 483
Score = 486 bits (1252), Expect(3) = e-157
Identities = 239/242 (98%), Positives = 242/242 (100%)
Frame = +3
Query: 372 ETAKIRPYAVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFT 551
+++KIRPYAVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFT
Sbjct: 61 QSSKIRPYAVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFT 120
Query: 552 YTAKKPADIKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGVVLS 731
YTAKKPADIKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGVVLS
Sbjct: 121 YTAKKPADIKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGVVLS 180
Query: 732 MPPIINGNHSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEVVFP 911
MPPIINGNHSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEVVFP
Sbjct: 181 MPPIINGNHSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEVVFP 240
Query: 912 NGKLHTFPELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEIEVP 1091
NGKLHTFPELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEIEVP
Sbjct: 241 NGKLHTFPELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEIEVP 300
Query: 1092 PT 1097
PT
Sbjct: 301 PT 302
Score = 76.3 bits (186), Expect(3) = e-157
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 1088 PSDRADIIHACDIIEDAAIAYGDIHIQMTLPKTYTIANQFPL 1213
P RADIIHACDIIEDAAIAYG +IQMTLPKTYTIANQFPL
Sbjct: 300 PPTRADIIHACDIIEDAAIAYGYNNIQMTLPKTYTIANQFPL 341
Score = 32.7 bits (73), Expect(3) = e-157
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +1
Query: 1207 PPNKFTELLRHDMXXXXXXXXXXXXXCSQE 1296
P NKFTELLRHDM CSQE
Sbjct: 340 PLNKFTELLRHDMAAAGFTEALTFALCSQE 369
>ref|XP_003356179.1| PREDICTED: leucine-rich repeat-containing protein 47-like [Sus
scrofa].
Length = 227
Score = 90.9 bits (224), Expect = 1e-18
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 14/158 (8%)
Frame = +3
Query: 468 KLHQNICRKRALVAIGTHDLDTLSGPFTYTAKKPADIKFKPLNKSKEYTACELMNIYKTD 647
KLH+++C KR I THDL + GP YTA+ P D+K PL + +E A +L+ + +
Sbjct: 5 KLHEDLCEKRTAATIATHDLRAIRGPLLYTARPPQDLKIVPLGR-REVKAKDLVRQLQLE 63
Query: 648 NQ-------------LKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGNHSKITVNTRNV 788
+ L YLH+++ + YP + D++G +S PPI N +KI T ++
Sbjct: 64 AEEHRKQKKRQNVSGLHRYLHLLDGQERYPCLLDADGDAISFPPITNSEKTKIKKTTCDL 123
Query: 789 FIECT-GTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAE 899
F+E T K +LD ++ +E N++T+E E
Sbjct: 124 FLEVTSAASLQICKDILDALILKMAEL--NKYTLENKE 159
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,467,439
Number of extensions: 659203
Number of successful extensions: 1313
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1312
Number of HSP's successfully gapped: 5
Length of query: 446
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 344
Effective length of database: 8,804,438
Effective search space: 3028726672
Effective search space used: 3028726672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008187
(1339 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035941.2| phenylalanyl-tRNA synthetase beta chain [Mus mu... 630 0.0
Alignment gi|NP_957678.1| leucine-rich repeat-containing protein 47 [Mus ... 108 9e-24
>ref|NP_035941.2| phenylalanyl-tRNA synthetase beta chain [Mus musculus].
Length = 589
Score = 630 bits (1626), Expect(4) = 0.0
Identities = 309/354 (87%), Positives = 331/354 (93%)
Frame = +3
Query: 36 MPTVSVKRDVLFRALGRTYTNEEFDELCFEFGLELDXXXXXXXXXXXXQGNEKAQGASDV 215
MPTVSVKRD+LF+ALGRTYT+EEFDELCFEFGLELD QG+ KAQGASDV
Sbjct: 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKQIISKEQGHGKAQGASDV 60
Query: 216 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPMYKRVMPNGEIQKLIITEETAKIRPY 395
VLYKIDVPANRYDLLCLEGL RGLQVFKERIKAP+YKRVMP G+IQKL+ITEETAK+RP+
Sbjct: 61 VLYKIDVPANRYDLLCLEGLARGLQVFKERIKAPVYKRVMPKGDIQKLVITEETAKVRPF 120
Query: 396 AVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKKPAD 575
AVAAVLRN+KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAK+P+D
Sbjct: 121 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD 180
Query: 576 IKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGN 755
IKFKPLNK+KEYTACELMNIYKTDN LKHYLHIIE+KPLYPVIYDSNGVVLSMPPIINGN
Sbjct: 181 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIESKPLYPVIYDSNGVVLSMPPIINGN 240
Query: 756 HSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEVVFPNGKLHTFP 935
HSKITVNTRN+FIECTGTDFTKAKIVLD IVTMFSE+C+NQFTVEA EVV PNGK TFP
Sbjct: 241 HSKITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEHCENQFTVEAVEVVSPNGKSSTFP 300
Query: 936 ELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEIEVPPT 1097
EL YRKE+VRADLINKK+GIRETP NLAKLLTRMCLKSEVIGDG+QIE+E+PPT
Sbjct: 301 ELPYRKEMVRADLINKKVGIRETPANLAKLLTRMCLKSEVIGDGNQIEVEIPPT 354
Score = 75.5 bits (184), Expect(4) = 0.0
Identities = 35/42 (83%), Positives = 38/42 (90%)
Frame = +2
Query: 1088 PSDRADIIHACDIIEDAAIAYGDIHIQMTLPKTYTIANQFPL 1213
P RAD+IHACDI+EDAAIAYG +IQMTLPKTYTIANQFPL
Sbjct: 352 PPTRADVIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Score = 26.2 bits (56), Expect(4) = 0.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 1207 PPNKFTELLRHDMXXXXXXXXXXXXXCSQE 1296
P NK TELLR DM CSQE
Sbjct: 392 PLNKLTELLRLDMAAAGFTEALTFALCSQE 421
Score = 22.3 bits (46), Expect(4) = 0.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 1296 EMADKRGLEFSATK 1337
++ADK GL+ SATK
Sbjct: 422 DIADKLGLDISATK 435
>ref|NP_957678.1| leucine-rich repeat-containing protein 47 [Mus musculus].
Length = 581
Score = 108 bits (270), Expect = 9e-24
Identities = 61/182 (33%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Frame = +3
Query: 363 ITEETAKIRPYAVAAVLRNMKFTK-DRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLS 539
++ E +RPY V A++R M + F+ Q KLH ++C KR I THDL +
Sbjct: 324 VSPEVKDVRPYIVGAIVRGMDLQPGNALRRFLNSQTKLHDDLCEKRTAATIATHDLQAVR 383
Query: 540 GPFTYTAKKPADIKFKPLNKSKEYTACELMNIYKTDNQ-------------LKHYLHIIE 680
GP Y A+ P D+K PL + KE A EL+ + + + L YLH+++
Sbjct: 384 GPLLYAARPPEDLKIVPLGR-KEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLD 442
Query: 681 NKPLYPVIYDSNGVVLSMPPIINGNHSKITVNTRNVFIECT-GTDFTKAKIVLDTIVTMF 857
K YP + D+ G V+S PPI N +KI T N+F+E T T K ++D+++
Sbjct: 443 GKENYPCLVDAEGDVISFPPITNSEKTKIKKTTCNLFLEVTSATSLQLCKDIMDSLILRM 502
Query: 858 SE 863
+E
Sbjct: 503 AE 504
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,278,539
Number of extensions: 924794
Number of successful extensions: 1976
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1975
Number of HSP's successfully gapped: 5
Length of query: 446
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 341
Effective length of database: 12,463,779
Effective search space: 4250148639
Effective search space used: 4250148639
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008187
(1339 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005678.3| phenylalanyl-tRNA synthetase beta chain [Homo s... 642 0.0
Alignment gi|NP_065761.1| leucine-rich repeat-containing protein 47 [Homo... 104 2e-22
>ref|NP_005678.3| phenylalanyl-tRNA synthetase beta chain [Homo sapiens].
Length = 589
Score = 642 bits (1655), Expect(3) = 0.0
Identities = 317/354 (89%), Positives = 336/354 (94%)
Frame = +3
Query: 36 MPTVSVKRDVLFRALGRTYTNEEFDELCFEFGLELDXXXXXXXXXXXXQGNEKAQGASDV 215
MPTVSVKRD+LF+ALGRTYT+EEFDELCFEFGLELD QGN KA GASDV
Sbjct: 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60
Query: 216 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPMYKRVMPNGEIQKLIITEETAKIRPY 395
VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAP+YKRVMP+G+IQKLIITEETAKIRP+
Sbjct: 61 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF 120
Query: 396 AVAAVLRNMKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKKPAD 575
AVAAVLRN+KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAK+P+D
Sbjct: 121 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD 180
Query: 576 IKFKPLNKSKEYTACELMNIYKTDNQLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGN 755
IKFKPLNK+KEYTACELMNIYKTDN LKHYLHIIENKPLYPVIYDSNGVVLSMPPIING+
Sbjct: 181 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD 240
Query: 756 HSKITVNTRNVFIECTGTDFTKAKIVLDTIVTMFSEYCDNQFTVEAAEVVFPNGKLHTFP 935
HS+ITVNTRN+FIECTGTDFTKAKIVLD IVTMFSEYC+NQFTVEAAEVVFPNGK HTFP
Sbjct: 241 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP 300
Query: 936 ELAYRKEIVRADLINKKIGIRETPENLAKLLTRMCLKSEVIGDGHQIEIEVPPT 1097
ELAYRKE+VRADLINKK+GIRETPENLAKLLTRM LKSEVIGDG+QIEIE+PPT
Sbjct: 301 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPT 354
Score = 75.9 bits (185), Expect(3) = 0.0
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +2
Query: 1088 PSDRADIIHACDIIEDAAIAYGDIHIQMTLPKTYTIANQFPL 1213
P RADIIHACDI+EDAAIAYG +IQMTLPKTYTIANQFPL
Sbjct: 352 PPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Score = 30.4 bits (67), Expect(3) = 0.0
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 1207 PPNKFTELLRHDMXXXXXXXXXXXXXCSQE 1296
P NK TELLRHDM CSQE
Sbjct: 392 PLNKLTELLRHDMAAAGFTEALTFALCSQE 421
>ref|NP_065761.1| leucine-rich repeat-containing protein 47 [Homo sapiens].
Length = 583
Score = 104 bits (259), Expect = 2e-22
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Frame = +3
Query: 363 ITEETAKIRPYAVAAVLRNMKFTK-DRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLS 539
++ E +RPY V AV+R M + F+ Q KLH+++C KR + TH+L +
Sbjct: 325 VSPEVRDVRPYIVGAVVRGMDLQPGNALKRFLTSQTKLHEDLCEKRTAATLATHELRAVK 384
Query: 540 GPFTYTAKKPADIKFKPLNKSKEYTACELMNIYKTDNQ-------------LKHYLHIIE 680
GP Y A+ P D+K PL + KE A EL+ + + + L YLH+++
Sbjct: 385 GPLLYCARPPQDLKIVPLGR-KEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLD 443
Query: 681 NKPLYPVIYDSNGVVLSMPPIINGNHSKITVNTRNVFIECT-GTDFTKAKIVLDTIVTMF 857
YP + D++G V+S PPI N +K+ T ++F+E T T K V+D ++
Sbjct: 444 GNENYPCLVDADGDVISFPPITNSEKTKVKKTTSDLFLEVTSATSLQICKDVMDALILKM 503
Query: 858 SEYCDNQFTVEAAE 899
+E ++T+E E
Sbjct: 504 AEM--KKYTLENKE 515
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,774,967
Number of extensions: 1071746
Number of successful extensions: 2296
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2295
Number of HSP's successfully gapped: 4
Length of query: 446
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 340
Effective length of database: 14,802,980
Effective search space: 5033013200
Effective search space used: 5033013200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008187
(1339 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 365 4e-98
>Sscrofa_Chr15
|| Length = 157681621
Score = 365 bits (184), Expect = 4e-98
Identities = 206/212 (97%), Gaps = 1/212 (0%)
Strand = Plus / Plus
Query: 994 tcagagaaactccagaaaatcttgccaagcttctgaccaggatgtgtttaaagtcagaag 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137978572 tcagagaaactccagaaaatcttgccaagcttctgaccaggatgtgtttaaagtcagaag 137978631
Query: 1054 tcataggcgatgggcatcagattgagattgaggtccctccga-cagagccgacattatcc 1112
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 137978632 tcataggcgatgggcatcagattgagattgaggtccctccgaccagagccgacattatcc 137978691
Query: 1113 atgcctgtgatatcatagaagatgcagccattgcttatggggatatacacattcagatga 1172
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 137978692 atgcctgtgatatcatagaagatgcagccattgcttatggatataacaacattcagatga 137978751
Query: 1173 ctctcccgaaaacatacaccatagctaatcaa 1204
||||||||||||||||||||||||||||||||
Sbjct: 137978752 ctctcccgaaaacatacaccatagctaatcaa 137978783
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 150 acttctgagaaggaaattataagtaaggaacaaggtaatgaaaaggcacagggggcctct 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138047107 acttctgagaaggaaattataagtaaggaacaaggtaatgaaaaggcacagggggcctct 138047166
Query: 210 gatgttgttctctacaaaattgacgtccctgccaatagatatgatctcctttgtctggaa 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138047167 gatgttgttctctacaaaattgacgtccctgccaatagatatgatctcctttgtctggaa 138047226
Query: 270 ggattggttcgaggacttcaagtcttcaaagaaagg 305
||||||||||||||||||||||||||||||||||||
Sbjct: 138047227 ggattggttcgaggacttcaagtcttcaaagaaagg 138047262
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 489 aggaaaagagcacttgttgctattggtacccatgatttggacactttgtcaggcccattt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137967574 aggaaaagagcacttgttgctattggtacccatgatttggacactttgtcaggcccattt 137967633
Query: 549 acttacactgcaaagaagcctgcagacatcaaattcaaacctctaaataagagcaaggaa 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137967634 acttacactgcaaagaagcctgcagacatcaaattcaaacctctaaataagagcaaggaa 137967693
Query: 609 tatacagcctgtgaactgatgaacatatacaag 641
|||||||||||||||||||||||||||||||||
Sbjct: 137967694 tatacagcctgtgaactgatgaacatatacaag 137967726
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 373 agacagctaaaatacgcccgtatgctgttgcagcggttctacgaaacatgaagtttacta 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137963812 agacagctaaaatacgcccgtatgctgttgcagcggttctacgaaacatgaagtttacta 137963871
Query: 433 aagatcggtatgacagcttcattgaacttcaggagaaattacatcagaacatctgcagg 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137963872 aagatcggtatgacagcttcattgaacttcaggagaaattacatcagaacatctgcagg 137963930
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 640 agactgacaatcaacttaaacattatttacatataattgaaaacaaacctctgtatccag 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137969096 agactgacaatcaacttaaacattatttacatataattgaaaacaaacctctgtatccag 137969155
Query: 700 ttatctatgacagcaatggtgtagtcctttccatgcctccaatcatcaatgg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137969156 ttatctatgacagcaatggtgtagtcctttccatgcctccaatcatcaatgg 137969207
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 2 gctctctgcgccggcgcagtaggctccactcgccatgccgactgtcagcgtgaagcgcga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138035448 gctctctgcgccggcgcagtaggctccactcgccatgccgactgtcagcgtgaagcgcga 138035507
Query: 62 tgtgctcttccgagctctgggccggacctaca 93
||||||||||||||||||||||||||||||||
Sbjct: 138035508 tgtgctcttccgagctctgggccggacctaca 138035539
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 750 ggaaatcattccaaaataacagtgaatactagaaatgtatttattgaatgcacaggaact 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137970268 ggaaatcattccaaaataacagtgaatactagaaatgtatttattgaatgcacaggaact 137970327
Query: 810 gactttactaagg 822
|||||||||||||
Sbjct: 137970328 gactttactaagg 137970340
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 820 aggcaaaaatagttcttgatactattgtcaccatgttcagtgaatattgtgataatcagt 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137972209 aggcaaaaatagttcttgatactattgtcaccatgttcagtgaatattgtgataatcagt 137972268
Query: 880 ttacg 884
|||||
Sbjct: 137972269 ttacg 137972273
Score = 123 bits (62), Expect = 3e-25
Identities = 75/78 (96%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1205 ttccccctaa-taagttcacagaactcctgagacatgacatggcagctgctggattcact 1263
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 137979279 ttccccctaaataagttcacagaactcctgagacatgacatggcggctgctggattcact 137979338
Query: 1264 ggagcacttacctttgcc 1281
| ||||||||||||||||
Sbjct: 137979339 gaagcacttacctttgcc 137979356
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 94 ccaatgaagaatttgatgaactatgttttgaatttggtctggaactcgatgaaatt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138043218 ccaatgaagaatttgatgaactatgttttgaatttggtctggaactcgatgaaatt 138043273
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 884 ggttgaagcagctgaggtagtttttcctaatggaaaattacatacctttccag 936
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137973204 ggttgaagcagctgaggtagtttttcctaatggaaaattacatacctttccag 137973256
Score = 89.7 bits (45), Expect = 4e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 936 gaactggcttaccgaaaggagatagtgagagctgatctaattaac 980
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137978240 gaactggcttaccgaaaggagatagtgagagctgatctaattaac 137978284
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,003,715
Number of extensions: 261
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 12
Length of query: 1339
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1318
Effective length of database: 2,808,413,156
Effective search space: 3701488539608
Effective search space used: 3701488539608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)