Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008189
(1000 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029461.1| sphingolipid delta(4)-desaturase DES1 [Bos t... 556 e-158
Alignment gi|NP_001069719.1| sphingolipid delta(4)-desaturase/C4-hydroxyl... 411 e-115
>ref|NP_001029461.1| sphingolipid delta(4)-desaturase DES1 [Bos taurus].
Length = 323
Score = 556 bits (1433), Expect = e-158
Identities = 254/282 (90%), Positives = 271/282 (96%), Gaps = 1/282 (0%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
REDFEWVYTDQPHA+RRQEILAKYPEIKSLMKPDSNLIWIVI+MVL+Q +AFYLVKDLDW
Sbjct: 7 REDFEWVYTDQPHATRRQEILAKYPEIKSLMKPDSNLIWIVIMMVLTQFVAFYLVKDLDW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
KWV+FWAYAFGSC+NHSMTLAIHEVSHNSAFGH K MWNRWFG+FANLPIGVPYSVSFKR
Sbjct: 67 KWVLFWAYAFGSCVNHSMTLAIHEVSHNSAFGHYKAMWNRWFGIFANLPIGVPYSVSFKR 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YHMDHHRYLG+DGIDVDIPTDFEGWFFCTTFRKF+WVILQPLFYAFRPLFINPKPISYLE
Sbjct: 127 YHMDHHRYLGADGIDVDIPTDFEGWFFCTTFRKFIWVILQPLFYAFRPLFINPKPISYLE 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
IINTVIQ+TFD+V+YYVLG+KSLVYML+ASL GLGLHPISGHFIAEHYMFLKGHETYSYY
Sbjct: 187 IINTVIQITFDIVVYYVLGVKSLVYMLAASLFGLGLHPISGHFIAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
GPLNLLTFNVGYHNEHHDFPNIPGK+ P ++ YYDNLP
Sbjct: 247 GPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLP 288
>ref|NP_001069719.1| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 [Bos taurus].
Length = 323
Score = 411 bits (1057), Expect = e-115
Identities = 180/282 (63%), Positives = 226/282 (80%), Gaps = 1/282 (0%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
R DFEWVYTDQPH RR+E+LAKYP IK+LM+PD L W V MVL+QL+A +L + L W
Sbjct: 7 RSDFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPYLKWTVTAMVLAQLLACWLAQGLAW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
+W+ FWAYAFG C+NHS+TLAIH++SHN+AFG +P NRWF +FANLP+G+PY+ SFK+
Sbjct: 67 RWLFFWAYAFGGCVNHSLTLAIHDISHNTAFGTGRPSRNRWFAIFANLPVGLPYAASFKK 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YH+DHHRYLG DG+DVD+PT FEG FCT RK +W+ LQP FY RPL ++PK ++ +E
Sbjct: 127 YHVDHHRYLGGDGLDVDVPTYFEGRLFCTPARKLLWLALQPFFYTLRPLCVHPKAMTRME 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
+ NT++Q+ D IY + G+K +VY+L++SLLGLGLHPISGHF+AEHYMFLKGHETYSYY
Sbjct: 187 LCNTLVQLAADATIYALWGLKPMVYLLASSLLGLGLHPISGHFVAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
GPLN +TFNVGYH EHHDFP+IP N P + YYD+LP
Sbjct: 247 GPLNWITFNVGYHMEHHDFPSIPSCNLPLVRKIAPEYYDHLP 288
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,771,717
Number of extensions: 827068
Number of successful extensions: 2006
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008189
(1000 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547516.2| PREDICTED: similar to degenerative spermatocyte... 503 e-142
Alignment gi|XP_547976.2| PREDICTED: similar to sphingolipid C4-hydroxyla... 406 e-113
>ref|XP_547516.2| PREDICTED: similar to degenerative spermatocyte homolog 1, lipid
desaturase [Canis familiaris].
Length = 434
Score = 503 bits (1295), Expect = e-142
Identities = 227/265 (85%), Positives = 250/265 (94%), Gaps = 1/265 (0%)
Frame = +3
Query: 177 QEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDWKWVIFWAYAFGSCINHS 356
+++++KYPEIKSLMKPD NLIWI+ +MVL+QL+AFYLVKDLDWKWVIFWAYAFGSCINHS
Sbjct: 135 KKLMSKYPEIKSLMKPDPNLIWIITMMVLTQLVAFYLVKDLDWKWVIFWAYAFGSCINHS 194
Query: 357 MTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKRYHMDHHRYLGSDGIDVD 536
+TLAIHEVSHNSAFGH + MWNRWFG+FANLPIGVPYS+SFKRYHMDHHRYLG DGIDVD
Sbjct: 195 VTLAIHEVSHNSAFGHYRAMWNRWFGMFANLPIGVPYSISFKRYHMDHHRYLGGDGIDVD 254
Query: 537 IPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLEIINTVIQVTFDVVIYYV 716
IPTDFEGWFFCTTFRKF+WV+LQPLFYAFRPLFINPKPI+YLEIINTVIQV FD+ +YYV
Sbjct: 255 IPTDFEGWFFCTTFRKFIWVVLQPLFYAFRPLFINPKPITYLEIINTVIQVIFDITVYYV 314
Query: 717 LGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH 896
G+KSLVYML+ASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH
Sbjct: 315 FGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH 374
Query: 897 DFPNIPGKNFPW*GN-SSGYYDNLP 968
DFPNIPGK+ P ++ YYDNLP
Sbjct: 375 DFPNIPGKSLPLVRKIAAEYYDNLP 399
>ref|XP_547976.2| PREDICTED: similar to sphingolipid C4-hydroxylase/delta
4-desaturase [Canis familiaris].
Length = 323
Score = 406 bits (1044), Expect = e-113
Identities = 175/282 (62%), Positives = 227/282 (80%), Gaps = 1/282 (0%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
R DFEWVYTDQPH RR+E+LAKYP IK+LM+PD L W V+ +VL+QL+A L ++L W
Sbjct: 7 RADFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPRLKWTVLALVLAQLLACRLARELPW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
+W++FWAYAFG C+NHS+TLAIH++SHN+AFG + NRW VFANLP+G+PY+ SFK+
Sbjct: 67 RWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGSGRAAHNRWLAVFANLPVGLPYAASFKK 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YH+DHHRYLG DG+DVD+PT EG FCT RK +W+ LQPLFY+ RPL ++PK ++ +E
Sbjct: 127 YHVDHHRYLGGDGLDVDVPTRLEGRLFCTPARKLLWLALQPLFYSLRPLCVHPKALTRME 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
++N ++Q+ D ++ + G+K + Y+L++SLLGLGLHPISGHF+AEHYMFLKGHETYSYY
Sbjct: 187 VLNALVQLAADAALFALWGLKPVAYLLASSLLGLGLHPISGHFVAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
GPLN +TFNVGYH EHHDFP+IPG N P + YYD+LP
Sbjct: 247 GPLNWITFNVGYHVEHHDFPSIPGCNLPQVRKIAPEYYDHLP 288
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,342,076
Number of extensions: 854602
Number of successful extensions: 2056
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2056
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008189
(1000 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357686.1| PREDICTED: sphingolipid delta(4)-desaturase ... 580 e-166
>ref|XP_003357686.1| PREDICTED: sphingolipid delta(4)-desaturase DES1 [Sus scrofa].
Length = 323
Score = 580 bits (1495), Expect = e-166
Identities = 273/282 (96%), Positives = 275/282 (97%), Gaps = 1/282 (0%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW
Sbjct: 7 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR
Sbjct: 67 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE
Sbjct: 127 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY
Sbjct: 187 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
GPLNLLTFNVGYHNEHHDFPNIPGKN P ++ YYDNLP
Sbjct: 247 GPLNLLTFNVGYHNEHHDFPNIPGKNLPLVRKIAAEYYDNLP 288
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,670,383
Number of extensions: 525934
Number of successful extensions: 1241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008189
(1000 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031879.1| sphingolipid delta(4)-desaturase DES1 [Mus musc... 528 e-150
Alignment gi|NP_001028991.1| hypothetical protein LOC619326 [Mus musculus]. 439 e-123
Alignment gi|NP_081575.2| sphingolipid delta(4)-desaturase/C4-hydroxylase... 422 e-118
Alignment gi|NP_001164473.1| sphingolipid delta(4)-desaturase/C4-hydroxyl... 418 e-117
>ref|NP_031879.1| sphingolipid delta(4)-desaturase DES1 [Mus musculus].
Length = 323
Score = 528 bits (1360), Expect = e-150
Identities = 238/282 (84%), Positives = 263/282 (93%), Gaps = 1/282 (0%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
RE+FEWVYTDQPHA+RR+EILAKYPEIKSLMKPD NLIWIV +M+L QL +FYLVKDLDW
Sbjct: 7 REEFEWVYTDQPHAARRKEILAKYPEIKSLMKPDHNLIWIVAMMLLVQLASFYLVKDLDW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
KWVIFW+Y FGSC+NHSMTLAIHE+SHN FGH K +WNRWFG+FANL +GVPYS+SFKR
Sbjct: 67 KWVIFWSYVFGSCLNHSMTLAIHEISHNFPFGHHKALWNRWFGMFANLSLGVPYSISFKR 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YHMDHHRYLG+D IDVDIPTDFEGWFFCTTFRKF+WVILQPLFYAFRPLFINPKPI+YLE
Sbjct: 127 YHMDHHRYLGADKIDVDIPTDFEGWFFCTTFRKFVWVILQPLFYAFRPLFINPKPITYLE 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
IINTVIQ+TFD++IYYV G+KSLVYML+A+LLGLGLHPISGHFIAEHYMFLKGHETYSYY
Sbjct: 187 IINTVIQITFDIIIYYVFGVKSLVYMLAATLLGLGLHPISGHFIAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
GPLNLLTFNVGYHNEHHDFPN+PGKN P +S YYD+LP
Sbjct: 247 GPLNLLTFNVGYHNEHHDFPNVPGKNLPMVRKIASEYYDDLP 288
>ref|NP_001028991.1| hypothetical protein LOC619326 [Mus musculus].
Length = 320
Score = 439 bits (1130), Expect = e-123
Identities = 197/281 (70%), Positives = 231/281 (82%), Gaps = 1/281 (0%)
Frame = +3
Query: 129 EDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDWK 308
ED EWVY D+ H RR+EILAKYPEIKSLMKPD NLIWI+ +++L QL YLVKDL+WK
Sbjct: 8 EDAEWVYNDRLHNDRRREILAKYPEIKSLMKPDPNLIWIITIIILIQLALLYLVKDLEWK 67
Query: 309 WVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKRY 488
WVIF AY FG INHS+ +A HE+SHN FGH K +WNRWFG+FANLPIG+P S+SFK+Y
Sbjct: 68 WVIFCAYVFGGSINHSLIIASHEISHNFPFGHRKALWNRWFGIFANLPIGIPCSISFKKY 127
Query: 489 HMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLEI 668
H DHHR+LG DG+DV +P EGWFFCT +RK +W+ QPLF FR LFIN KPISYLEI
Sbjct: 128 HTDHHRFLGVDGVDVGVPHYLEGWFFCTAYRKLVWIAFQPLFITFRLLFINRKPISYLEI 187
Query: 669 INTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYYG 848
INTV+Q+TFD+++YYV G+KSLVYML AS+LGLGLHPISG+ I +HYMFLK ET+SYYG
Sbjct: 188 INTVVQITFDIIVYYVFGVKSLVYMLVASMLGLGLHPISGNLIGDHYMFLKDQETFSYYG 247
Query: 849 PLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
PLNLLTFNVGYHNEHHDFPNIPGK+ P ++ YYD LP
Sbjct: 248 PLNLLTFNVGYHNEHHDFPNIPGKDLPLVRKIAAEYYDKLP 288
>ref|NP_081575.2| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 isoform 1 [Mus
musculus].
Length = 323
Score = 422 bits (1084), Expect = e-118
Identities = 184/282 (65%), Positives = 232/282 (82%), Gaps = 1/282 (0%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
R DFEWVY+DQPH RR+E+LAKYP IK+LM+PD ++ W V MVL Q++A +LV+ L W
Sbjct: 7 RSDFEWVYSDQPHTQRRKEMLAKYPAIKALMRPDPHIKWTVSGMVLVQVLACWLVRGLSW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
+W++FWAYAFG CINHS+TLAIH++SHN+AFG NRWF +FANLPIG+PY+ SFK+
Sbjct: 67 RWLLFWAYAFGGCINHSLTLAIHDISHNTAFGTSCVSRNRWFAIFANLPIGLPYATSFKK 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YH+DHHRYLG DG+DVDIPT+FEGWFFCT RK +W++LQP FY+ RPL +NPK ++ +E
Sbjct: 127 YHVDHHRYLGGDGLDVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPKVVTRME 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
I+N ++Q+ FDV I+ + G+K +VY+L +SLLGLGLHPISGHF+AEHYMFLKGHETYSYY
Sbjct: 187 ILNALVQLAFDVTIFALWGIKPIVYLLGSSLLGLGLHPISGHFVAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
GPLN +TFNVGYH EHHDFP+IPG P + YYD+LP
Sbjct: 247 GPLNWITFNVGYHMEHHDFPSIPGYYLPLVRKIAPEYYDHLP 288
>ref|NP_001164473.1| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 isoform 2 [Mus
musculus].
Length = 286
Score = 418 bits (1074), Expect = e-117
Identities = 179/268 (66%), Positives = 225/268 (83%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
R DFEWVY+DQPH RR+E+LAKYP IK+LM+PD ++ W V MVL Q++A +LV+ L W
Sbjct: 7 RSDFEWVYSDQPHTQRRKEMLAKYPAIKALMRPDPHIKWTVSGMVLVQVLACWLVRGLSW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
+W++FWAYAFG CINHS+TLAIH++SHN+AFG NRWF +FANLPIG+PY+ SFK+
Sbjct: 67 RWLLFWAYAFGGCINHSLTLAIHDISHNTAFGTSCVSRNRWFAIFANLPIGLPYATSFKK 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YH+DHHRYLG DG+DVDIPT+FEGWFFCT RK +W++LQP FY+ RPL +NPK ++ +E
Sbjct: 127 YHVDHHRYLGGDGLDVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPKVVTRME 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
I+N ++Q+ FDV I+ + G+K +VY+L +SLLGLGLHPISGHF+AEHYMFLKGHETYSYY
Sbjct: 187 ILNALVQLAFDVTIFALWGIKPIVYLLGSSLLGLGLHPISGHFVAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFP 929
GPLN +TFNVGYH EHHDFP+IPG P
Sbjct: 247 GPLNWITFNVGYHMEHHDFPSIPGYYLP 274
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,668,023
Number of extensions: 725665
Number of successful extensions: 1722
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1721
Number of HSP's successfully gapped: 4
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008189
(1000 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003667.1| sphingolipid delta(4)-desaturase DES1 [Homo sap... 537 e-153
Alignment gi|NP_996801.2| sphingolipid delta(4)-desaturase/C4-hydroxylase... 420 e-118
>ref|NP_003667.1| sphingolipid delta(4)-desaturase DES1 [Homo sapiens].
Length = 323
Score = 537 bits (1383), Expect = e-153
Identities = 243/282 (86%), Positives = 267/282 (94%), Gaps = 1/282 (0%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
REDFEWVYTDQPHA RR+EILAKYPEIKSLMKPD NLIWI+I+MVL+QL AFY+VKDLDW
Sbjct: 7 REDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYIVKDLDW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
KWVIF AYAFGSCINHSMTLAIHE++HN+AFG+CK MWNRWFG+FANLPIG+PYS+SFKR
Sbjct: 67 KWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPYSISFKR 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YHMDHHRYLG+DG+DVDIPTDFEGWFFCT FRKF+WVILQPLFYAFRPLFINPKPI+YLE
Sbjct: 127 YHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPKPITYLE 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
+INTV QVTFD++IYY LG+KSLVYML+ASLLGLGLHPISGHFIAEHYMFLKGHETYSYY
Sbjct: 187 VINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
GPLNLLTFNVGYHNEHHDFPNIPGK+ P ++ YYDNLP
Sbjct: 247 GPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLP 288
>ref|NP_996801.2| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 [Homo
sapiens].
Length = 323
Score = 420 bits (1080), Expect = e-118
Identities = 180/282 (63%), Positives = 232/282 (82%), Gaps = 1/282 (0%)
Frame = +3
Query: 126 REDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDW 305
R DFEWVYTDQPH RR+EILAKYP IK+LM+PD L W V+++VL Q++A +LV+ L W
Sbjct: 7 RSDFEWVYTDQPHTQRRKEILAKYPAIKALMRPDPRLKWAVLVLVLVQMLACWLVRGLAW 66
Query: 306 KWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKR 485
+W++FWAYAFG C+NHS+TLAIH++SHN+AFG + NRW VFANLP+GVPY+ SFK+
Sbjct: 67 RWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAARNRWLAVFANLPVGVPYAASFKK 126
Query: 486 YHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLE 665
YH+DHHRYLG DG+DVD+PT EGWFFCT RK +W++LQP FY+ RPL ++PK ++ +E
Sbjct: 127 YHVDHHRYLGGDGLDVDVPTRLEGWFFCTPARKLLWLVLQPFFYSLRPLCVHPKAVTRME 186
Query: 666 IINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYY 845
++NT++Q+ D+ I+ + G+K +VY+L++S LGLGLHPISGHF+AEHYMFLKGHETYSYY
Sbjct: 187 VLNTLVQLAADLAIFALWGLKPVVYLLASSFLGLGLHPISGHFVAEHYMFLKGHETYSYY 246
Query: 846 GPLNLLTFNVGYHNEHHDFPNIPGKNFPW*GN-SSGYYDNLP 968
GPLN +TFNVGYH EHHDFP+IPG N P + YYD+LP
Sbjct: 247 GPLNWITFNVGYHVEHHDFPSIPGYNLPLVRKIAPEYYDHLP 288
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,752,089
Number of extensions: 851198
Number of successful extensions: 1895
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1895
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008189
(1000 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1463 0.0
Sscrofa_Chr07 62 6e-07
>Sscrofa_Chr10
|| Length = 79102373
Score = 1463 bits (738), Expect = 0.0
Identities = 745/746 (99%), Gaps = 1/746 (0%)
Strand = Plus / Plus
Query: 189 gcaaagtatcccgagataaaatctttgatgaaacctgattccaacttgatatggattgta 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15048937 gcaaagtatcccgagataaaatctttgatgaaacctgattccaacttgatatggattgta 15048996
Query: 249 attttgatggttctcagtcagttaattgcattttatttagtaaaggacttggactggaaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15048997 attttgatggttctcagtcagttaattgcattttatttagtaaaggacttggactggaaa 15049056
Query: 309 tgggtcatattttgggcatatgcctttggaagctgcattaatcattccatgactctggct 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049057 tgggtcatattttgggcatatgcctttggaagctgcattaatcattccatgactctggct 15049116
Query: 369 attcatgaagtgtcccacaatagtgcctttggccactgcaaacctatgtggaatcgttgg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049117 attcatgaagtgtcccacaatagtgcctttggccactgcaaacctatgtggaatcgttgg 15049176
Query: 429 tttggagtatttgctaatctccctattggtgttccgtattccgtttcctttaagaggtat 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049177 tttggagtatttgctaatctccctattggtgttccgtattccgtttcctttaagaggtat 15049236
Query: 489 cacatggatcatcatcgatacctcggaagtgatggcatcgacgtggatattccaactgat 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049237 cacatggatcatcatcgatacctcggaagtgatggcatcgacgtggatattccaactgat 15049296
Query: 549 ttcgaaggctggttcttctgcaccactttcagaaagtttatgtgggttattcttcagccg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049297 ttcgaaggctggttcttctgcaccactttcagaaagtttatgtgggttattcttcagccg 15049356
Query: 609 ctcttttatgcctttcgacctctgttcatcaaccccaagccaatttcctatctggagatt 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049357 ctcttttatgcctttcgacctctgttcatcaaccccaagccaatttcctatctggagatt 15049416
Query: 669 atcaatactgtgatccaggtcacttttgacgttgtgatttactacgtcttgggaatgaaa 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049417 atcaatactgtgatccaggtcacttttgacgttgtgatttactacgtcttgggaatgaaa 15049476
Query: 729 tctttagtctacatgctgtcagcatccttacttggtctaggtttgcacccaatttctgga 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049477 tctttagtctacatgctgtcagcatccttacttggtctaggtttgcacccaatttctgga 15049536
Query: 789 cattttatagctgaacattacatgttcttaaaagggcatgaaacttactcgtattacggg 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049537 cattttatagctgaacattacatgttcttaaaagggcatgaaacttactcgtattacggg 15049596
Query: 849 cctctgaacttactcaccttcaacgtgggctaccacaacgagcaccatgacttccccaac 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049597 cctctgaacttactcaccttcaacgtgggctaccacaacgagcaccatgacttccccaac 15049656
Query: 909 attcccgggaaaaa-cttcccctggt 933
|||||||||||||| |||||||||||
Sbjct: 15049657 attcccgggaaaaaccttcccctggt 15049682
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 tgacacgagtcgggagctgccgccgctgccgtcgccgctttcgccttcacctcggagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15042559 tgacacgagtcgggagctgccgccgctgccgtcgccgctttcgccttcacctcggagatc 15042618
Query: 61 gagagcggggagcaggctcgcgagccgccgccgcctccgtcgccgccatggggaaccgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15042619 gagagcggggagcaggctcgcgagccgccgccgcctccgtcgccgccatggggaaccgag 15042678
Query: 121 ttgcgcgggaagacttcgagtgggtctacactgaccagccccacgccagtcggcgccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15042679 ttgcgcgggaagacttcgagtgggtctacactgaccagccccacgccagtcggcgccagg 15042738
Query: 181 agatcctgg 189
|||||||||
Sbjct: 15042739 agatcctgg 15042747
Score = 75.8 bits (38), Expect = 4e-11
Identities = 62/66 (93%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 938 aaatagcagcgga-tactatgacaacctcccc-actatatttcctggat-aaagtactgt 994
||||||||||||| |||||||||||||||||| |||||| ||||||||| ||||||||||
Sbjct: 15052742 aaatagcagcggagtactatgacaacctcccccactataattcctggataaaagtactgt 15052801
Query: 995 atgatt 1000
||||||
Sbjct: 15052802 atgatt 15052807
>Sscrofa_Chr07
|| Length = 134764511
Score = 61.9 bits (31), Expect = 6e-07
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 862 tcaccttcaacgtgggctaccacaacgagcaccatgacttccccaacattcccgg 916
||||||||||||||||||||||| |||||||| |||||||||| ||| |||||
Sbjct: 128593568 tcaccttcaacgtgggctaccacgtggagcaccacgacttccccagcatccccgg 128593622
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,265,411
Number of extensions: 235
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 4
Length of query: 1000
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 979
Effective length of database: 2,808,413,156
Effective search space: 2749436479724
Effective search space used: 2749436479724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)