Animal-Genome cDNA 20110601C-008190


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008190
         (1027 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029461.1| sphingolipid delta(4)-desaturase DES1 [Bos t...   563   e-161
Alignment   gi|NP_001069719.1| sphingolipid delta(4)-desaturase/C4-hydroxyl...   414   e-120

>ref|NP_001029461.1| sphingolipid delta(4)-desaturase DES1 [Bos taurus].
          Length = 323

 Score =  563 bits (1452), Expect = e-161
 Identities = 262/299 (87%), Positives = 278/299 (92%), Gaps = 1/299 (0%)
 Frame = +1

Query: 133  MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
            MGNRV+REDFEWVYTDQPHA+RRQEILAKYPEIKSLMKPDSNLIWIVI+MVL+Q +AFYL
Sbjct: 1    MGNRVSREDFEWVYTDQPHATRRQEILAKYPEIKSLMKPDSNLIWIVIMMVLTQFVAFYL 60

Query: 313  VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
            VKDLDWKWV+FWAYAFGSC+NHSMTLAIHEVSHNSAFGH K MWNRWFG+FANLPIGVPY
Sbjct: 61   VKDLDWKWVLFWAYAFGSCVNHSMTLAIHEVSHNSAFGHYKAMWNRWFGIFANLPIGVPY 120

Query: 493  SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
            SVSFKRYHMDHHRYLG+DGIDVDIPTDFEGWFFCTTFRKF+WVILQPLFYAFRPLFINPK
Sbjct: 121  SVSFKRYHMDHHRYLGADGIDVDIPTDFEGWFFCTTFRKFIWVILQPLFYAFRPLFINPK 180

Query: 673  PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            PISYLEIINTVIQ+TFD+V+YYVLG+KSLVYML+ASL GLGLHPISGHFIAEHYMFLKGH
Sbjct: 181  PISYLEIINTVIQITFDIVVYYVLGVKSLVYMLAASLFGLGLHPISGHFIAEHYMFLKGH 240

Query: 853  ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
            ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGK+ P   K         P Y S  KVLYD
Sbjct: 241  ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYD 299


>ref|NP_001069719.1| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 [Bos taurus].
          Length = 323

 Score =  414 bits (1063), Expect(2) = e-120
 Identities = 178/274 (64%), Positives = 222/274 (81%)
 Frame = +1

Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
           MGNR  R DFEWVYTDQPH  RR+E+LAKYP IK+LM+PD  L W V  MVL+QL+A +L
Sbjct: 1   MGNRAGRSDFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPYLKWTVTAMVLAQLLACWL 60

Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
            + L W+W+ FWAYAFG C+NHS+TLAIH++SHN+AFG  +P  NRWF +FANLP+G+PY
Sbjct: 61  AQGLAWRWLFFWAYAFGGCVNHSLTLAIHDISHNTAFGTGRPSRNRWFAIFANLPVGLPY 120

Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
           + SFK+YH+DHHRYLG DG+DVD+PT FEG  FCT  RK +W+ LQP FY  RPL ++PK
Sbjct: 121 AASFKKYHVDHHRYLGGDGLDVDVPTYFEGRLFCTPARKLLWLALQPFFYTLRPLCVHPK 180

Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            ++ +E+ NT++Q+  D  IY + G+K +VY+L++SLLGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 AMTRMELCNTLVQLAADATIYALWGLKPMVYLLASSLLGLGLHPISGHFVAEHYMFLKGH 240

Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
           ETYSYYGPLN +TFNVGYH EHHDFP+IP    P
Sbjct: 241 ETYSYYGPLNWITFNVGYHMEHHDFPSIPSCNLP 274



 Score = 37.7 bits (86), Expect(2) = e-120
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 945 NLPLVRKIATEYYDHLP 995
           NLPLVRKIA EYYDHLP
Sbjct: 272 NLPLVRKIAPEYYDHLP 288


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,120,448
Number of extensions: 935353
Number of successful extensions: 2074
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2071
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008190
         (1027 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_547516.2| PREDICTED: similar to degenerative spermatocyte...   499   e-141
Alignment   gi|XP_547976.2| PREDICTED: similar to sphingolipid C4-hydroxyla...   406   e-117

>ref|XP_547516.2| PREDICTED: similar to degenerative spermatocyte homolog 1, lipid
            desaturase [Canis familiaris].
          Length = 434

 Score =  499 bits (1284), Expect = e-141
 Identities = 229/276 (82%), Positives = 251/276 (90%), Gaps = 1/276 (0%)
 Frame = +1

Query: 202  QEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDWKWVIFWAYAFGSCINHS 381
            +++++KYPEIKSLMKPD NLIWI+ +MVL+QL+AFYLVKDLDWKWVIFWAYAFGSCINHS
Sbjct: 135  KKLMSKYPEIKSLMKPDPNLIWIITMMVLTQLVAFYLVKDLDWKWVIFWAYAFGSCINHS 194

Query: 382  MTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKRYHMDHHRYLGSDGIDVD 561
            +TLAIHEVSHNSAFGH + MWNRWFG+FANLPIGVPYS+SFKRYHMDHHRYLG DGIDVD
Sbjct: 195  VTLAIHEVSHNSAFGHYRAMWNRWFGMFANLPIGVPYSISFKRYHMDHHRYLGGDGIDVD 254

Query: 562  IPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLEIINTVIQVTFDVVIYYV 741
            IPTDFEGWFFCTTFRKF+WV+LQPLFYAFRPLFINPKPI+YLEIINTVIQV FD+ +YYV
Sbjct: 255  IPTDFEGWFFCTTFRKFIWVVLQPLFYAFRPLFINPKPITYLEIINTVIQVIFDITVYYV 314

Query: 742  LGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH 921
             G+KSLVYML+ASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH
Sbjct: 315  FGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH 374

Query: 922  DFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
            DFPNIPGK+ P   K         P Y S  +VLYD
Sbjct: 375  DFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIRVLYD 410


>ref|XP_547976.2| PREDICTED: similar to sphingolipid C4-hydroxylase/delta
           4-desaturase [Canis familiaris].
          Length = 323

 Score =  406 bits (1044), Expect(2) = e-117
 Identities = 172/274 (62%), Positives = 222/274 (81%)
 Frame = +1

Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
           MGN   R DFEWVYTDQPH  RR+E+LAKYP IK+LM+PD  L W V+ +VL+QL+A  L
Sbjct: 1   MGNSAGRADFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPRLKWTVLALVLAQLLACRL 60

Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
            ++L W+W++FWAYAFG C+NHS+TLAIH++SHN+AFG  +   NRW  VFANLP+G+PY
Sbjct: 61  ARELPWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGSGRAAHNRWLAVFANLPVGLPY 120

Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
           + SFK+YH+DHHRYLG DG+DVD+PT  EG  FCT  RK +W+ LQPLFY+ RPL ++PK
Sbjct: 121 AASFKKYHVDHHRYLGGDGLDVDVPTRLEGRLFCTPARKLLWLALQPLFYSLRPLCVHPK 180

Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            ++ +E++N ++Q+  D  ++ + G+K + Y+L++SLLGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 ALTRMEVLNALVQLAADAALFALWGLKPVAYLLASSLLGLGLHPISGHFVAEHYMFLKGH 240

Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
           ETYSYYGPLN +TFNVGYH EHHDFP+IPG   P
Sbjct: 241 ETYSYYGPLNWITFNVGYHVEHHDFPSIPGCNLP 274



 Score = 35.4 bits (80), Expect(2) = e-117
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 945 NLPLVRKIATEYYDHLP 995
           NLP VRKIA EYYDHLP
Sbjct: 272 NLPQVRKIAPEYYDHLP 288


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,717,136
Number of extensions: 953416
Number of successful extensions: 2276
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2275
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008190
         (1027 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003357686.1| PREDICTED: sphingolipid delta(4)-desaturase ...   586   e-168

>ref|XP_003357686.1| PREDICTED: sphingolipid delta(4)-desaturase DES1 [Sus scrofa].
          Length = 323

 Score =  586 bits (1511), Expect = e-168
 Identities = 281/299 (93%), Positives = 281/299 (93%), Gaps = 1/299 (0%)
 Frame = +1

Query: 133  MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
            MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL
Sbjct: 1    MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 60

Query: 313  VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
            VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY
Sbjct: 61   VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 120

Query: 493  SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
            SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK
Sbjct: 121  SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 180

Query: 673  PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH
Sbjct: 181  PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 240

Query: 853  ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
            ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGK  P   K         P Y S  KVLYD
Sbjct: 241  ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKNLPLVRKIAAEYYDNLPHYNSWIKVLYD 299


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,388,439
Number of extensions: 622522
Number of successful extensions: 1306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1304
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008190
         (1027 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031879.1| sphingolipid delta(4)-desaturase DES1 [Mus musc...   531   e-151
Alignment   gi|NP_081575.2| sphingolipid delta(4)-desaturase/C4-hydroxylase...   426   e-123
Alignment   gi|NP_001028991.1| hypothetical protein LOC619326 [Mus musculus].    436   e-122
Alignment   gi|NP_001164473.1| sphingolipid delta(4)-desaturase/C4-hydroxyl...   426   e-119

>ref|NP_031879.1| sphingolipid delta(4)-desaturase DES1 [Mus musculus].
          Length = 323

 Score =  531 bits (1369), Expect = e-151
 Identities = 244/299 (81%), Positives = 269/299 (89%), Gaps = 1/299 (0%)
 Frame = +1

Query: 133  MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
            MG+RV+RE+FEWVYTDQPHA+RR+EILAKYPEIKSLMKPD NLIWIV +M+L QL +FYL
Sbjct: 1    MGSRVSREEFEWVYTDQPHAARRKEILAKYPEIKSLMKPDHNLIWIVAMMLLVQLASFYL 60

Query: 313  VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
            VKDLDWKWVIFW+Y FGSC+NHSMTLAIHE+SHN  FGH K +WNRWFG+FANL +GVPY
Sbjct: 61   VKDLDWKWVIFWSYVFGSCLNHSMTLAIHEISHNFPFGHHKALWNRWFGMFANLSLGVPY 120

Query: 493  SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
            S+SFKRYHMDHHRYLG+D IDVDIPTDFEGWFFCTTFRKF+WVILQPLFYAFRPLFINPK
Sbjct: 121  SISFKRYHMDHHRYLGADKIDVDIPTDFEGWFFCTTFRKFVWVILQPLFYAFRPLFINPK 180

Query: 673  PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            PI+YLEIINTVIQ+TFD++IYYV G+KSLVYML+A+LLGLGLHPISGHFIAEHYMFLKGH
Sbjct: 181  PITYLEIINTVIQITFDIIIYYVFGVKSLVYMLAATLLGLGLHPISGHFIAEHYMFLKGH 240

Query: 853  ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
            ETYSYYGPLNLLTFNVGYHNEHHDFPN+PGK  P   K         P Y S  KVLYD
Sbjct: 241  ETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPMVRKIASEYYDDLPHYNSWIKVLYD 299


>ref|NP_081575.2| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 isoform 1 [Mus
           musculus].
          Length = 323

 Score =  426 bits (1094), Expect(2) = e-123
 Identities = 183/274 (66%), Positives = 229/274 (83%)
 Frame = +1

Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
           MGN  AR DFEWVY+DQPH  RR+E+LAKYP IK+LM+PD ++ W V  MVL Q++A +L
Sbjct: 1   MGNSAARSDFEWVYSDQPHTQRRKEMLAKYPAIKALMRPDPHIKWTVSGMVLVQVLACWL 60

Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
           V+ L W+W++FWAYAFG CINHS+TLAIH++SHN+AFG      NRWF +FANLPIG+PY
Sbjct: 61  VRGLSWRWLLFWAYAFGGCINHSLTLAIHDISHNTAFGTSCVSRNRWFAIFANLPIGLPY 120

Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
           + SFK+YH+DHHRYLG DG+DVDIPT+FEGWFFCT  RK +W++LQP FY+ RPL +NPK
Sbjct: 121 ATSFKKYHVDHHRYLGGDGLDVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPK 180

Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            ++ +EI+N ++Q+ FDV I+ + G+K +VY+L +SLLGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 VVTRMEILNALVQLAFDVTIFALWGIKPIVYLLGSSLLGLGLHPISGHFVAEHYMFLKGH 240

Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
           ETYSYYGPLN +TFNVGYH EHHDFP+IPG   P
Sbjct: 241 ETYSYYGPLNWITFNVGYHMEHHDFPSIPGYYLP 274



 Score = 35.4 bits (80), Expect(2) = e-123
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 948 LPLVRKIATEYYDHLP 995
           LPLVRKIA EYYDHLP
Sbjct: 273 LPLVRKIAPEYYDHLP 288


>ref|NP_001028991.1| hypothetical protein LOC619326 [Mus musculus].
          Length = 320

 Score =  436 bits (1120), Expect = e-122
 Identities = 200/292 (68%), Positives = 232/292 (79%), Gaps = 1/292 (0%)
 Frame = +1

Query: 154  EDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDWK 333
            ED EWVY D+ H  RR+EILAKYPEIKSLMKPD NLIWI+ +++L QL   YLVKDL+WK
Sbjct: 8    EDAEWVYNDRLHNDRRREILAKYPEIKSLMKPDPNLIWIITIIILIQLALLYLVKDLEWK 67

Query: 334  WVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKRY 513
            WVIF AY FG  INHS+ +A HE+SHN  FGH K +WNRWFG+FANLPIG+P S+SFK+Y
Sbjct: 68   WVIFCAYVFGGSINHSLIIASHEISHNFPFGHRKALWNRWFGIFANLPIGIPCSISFKKY 127

Query: 514  HMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLEI 693
            H DHHR+LG DG+DV +P   EGWFFCT +RK +W+  QPLF  FR LFIN KPISYLEI
Sbjct: 128  HTDHHRFLGVDGVDVGVPHYLEGWFFCTAYRKLVWIAFQPLFITFRLLFINRKPISYLEI 187

Query: 694  INTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYYG 873
            INTV+Q+TFD+++YYV G+KSLVYML AS+LGLGLHPISG+ I +HYMFLK  ET+SYYG
Sbjct: 188  INTVVQITFDIIVYYVFGVKSLVYMLVASMLGLGLHPISGNLIGDHYMFLKDQETFSYYG 247

Query: 874  PLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
            PLNLLTFNVGYHNEHHDFPNIPGK  P   K         P + S  KVLYD
Sbjct: 248  PLNLLTFNVGYHNEHHDFPNIPGKDLPLVRKIAAEYYDKLPHHISWIKVLYD 299


>ref|NP_001164473.1| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 isoform 2 [Mus
           musculus].
          Length = 286

 Score =  426 bits (1094), Expect = e-119
 Identities = 183/274 (66%), Positives = 229/274 (83%)
 Frame = +1

Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
           MGN  AR DFEWVY+DQPH  RR+E+LAKYP IK+LM+PD ++ W V  MVL Q++A +L
Sbjct: 1   MGNSAARSDFEWVYSDQPHTQRRKEMLAKYPAIKALMRPDPHIKWTVSGMVLVQVLACWL 60

Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
           V+ L W+W++FWAYAFG CINHS+TLAIH++SHN+AFG      NRWF +FANLPIG+PY
Sbjct: 61  VRGLSWRWLLFWAYAFGGCINHSLTLAIHDISHNTAFGTSCVSRNRWFAIFANLPIGLPY 120

Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
           + SFK+YH+DHHRYLG DG+DVDIPT+FEGWFFCT  RK +W++LQP FY+ RPL +NPK
Sbjct: 121 ATSFKKYHVDHHRYLGGDGLDVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPK 180

Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            ++ +EI+N ++Q+ FDV I+ + G+K +VY+L +SLLGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 VVTRMEILNALVQLAFDVTIFALWGIKPIVYLLGSSLLGLGLHPISGHFVAEHYMFLKGH 240

Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
           ETYSYYGPLN +TFNVGYH EHHDFP+IPG   P
Sbjct: 241 ETYSYYGPLNWITFNVGYHMEHHDFPSIPGYYLP 274


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,504,352
Number of extensions: 798464
Number of successful extensions: 1865
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1862
Number of HSP's successfully gapped: 5
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008190
         (1027 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003667.1| sphingolipid delta(4)-desaturase DES1 [Homo sap...   542   e-154
Alignment   gi|NP_996801.2| sphingolipid delta(4)-desaturase/C4-hydroxylase...   421   e-122

>ref|NP_003667.1| sphingolipid delta(4)-desaturase DES1 [Homo sapiens].
          Length = 323

 Score =  542 bits (1397), Expect = e-154
 Identities = 250/299 (83%), Positives = 274/299 (91%), Gaps = 1/299 (0%)
 Frame = +1

Query: 133  MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
            MG+RV+REDFEWVYTDQPHA RR+EILAKYPEIKSLMKPD NLIWI+I+MVL+QL AFY+
Sbjct: 1    MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI 60

Query: 313  VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
            VKDLDWKWVIF AYAFGSCINHSMTLAIHE++HN+AFG+CK MWNRWFG+FANLPIG+PY
Sbjct: 61   VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY 120

Query: 493  SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
            S+SFKRYHMDHHRYLG+DG+DVDIPTDFEGWFFCT FRKF+WVILQPLFYAFRPLFINPK
Sbjct: 121  SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK 180

Query: 673  PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            PI+YLE+INTV QVTFD++IYY LG+KSLVYML+ASLLGLGLHPISGHFIAEHYMFLKGH
Sbjct: 181  PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH 240

Query: 853  ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
            ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGK+ P   K         P Y S  KVLYD
Sbjct: 241  ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYD 299


>ref|NP_996801.2| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 [Homo
           sapiens].
          Length = 323

 Score =  421 bits (1081), Expect(2) = e-122
 Identities = 177/274 (64%), Positives = 228/274 (83%)
 Frame = +1

Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
           MGN  +R DFEWVYTDQPH  RR+EILAKYP IK+LM+PD  L W V+++VL Q++A +L
Sbjct: 1   MGNSASRSDFEWVYTDQPHTQRRKEILAKYPAIKALMRPDPRLKWAVLVLVLVQMLACWL 60

Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
           V+ L W+W++FWAYAFG C+NHS+TLAIH++SHN+AFG  +   NRW  VFANLP+GVPY
Sbjct: 61  VRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAARNRWLAVFANLPVGVPY 120

Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
           + SFK+YH+DHHRYLG DG+DVD+PT  EGWFFCT  RK +W++LQP FY+ RPL ++PK
Sbjct: 121 AASFKKYHVDHHRYLGGDGLDVDVPTRLEGWFFCTPARKLLWLVLQPFFYSLRPLCVHPK 180

Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
            ++ +E++NT++Q+  D+ I+ + G+K +VY+L++S LGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 AVTRMEVLNTLVQLAADLAIFALWGLKPVVYLLASSFLGLGLHPISGHFVAEHYMFLKGH 240

Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
           ETYSYYGPLN +TFNVGYH EHHDFP+IPG   P
Sbjct: 241 ETYSYYGPLNWITFNVGYHVEHHDFPSIPGYNLP 274



 Score = 37.7 bits (86), Expect(2) = e-122
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 945 NLPLVRKIATEYYDHLP 995
           NLPLVRKIA EYYDHLP
Sbjct: 272 NLPLVRKIAPEYYDHLP 288


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,009,784
Number of extensions: 942058
Number of successful extensions: 2053
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2052
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008190
         (1027 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                        1447   0.0  
Sscrofa_Chr07                                                          62   6e-07

>Sscrofa_Chr10 
||          Length = 79102373

 Score = 1447 bits (730), Expect = 0.0
 Identities = 743/746 (99%), Gaps = 1/746 (0%)
 Strand = Plus / Plus

                                                                            
Query: 214      gcaaagtatcccgagataaaatctttgatgaaacctgattccaacttgatatggattgta 273
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15048937 gcaaagtatcccgagataaaatctttgatgaaacctgattccaacttgatatggattgta 15048996

                                                                            
Query: 274      attttgatggttctcagtcagttaattgcattttatttagtaaaggacttggactggaaa 333
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15048997 attttgatggttctcagtcagttaattgcattttatttagtaaaggacttggactggaaa 15049056

                                                                            
Query: 334      tgggtcatattttgggcatatgcctttggaagctgcattaaccattccatgactctggct 393
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 15049057 tgggtcatattttgggcatatgcctttggaagctgcattaatcattccatgactctggct 15049116

                                                                            
Query: 394      attcatgaagtgtcccacaatagtgcctttggccactgcaaacctatgtggaatcgttgg 453
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049117 attcatgaagtgtcccacaatagtgcctttggccactgcaaacctatgtggaatcgttgg 15049176

                                                                            
Query: 454      tttggagtatttgctaatctccctattggtgttccgtattccgtttcctttaagaggtat 513
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049177 tttggagtatttgctaatctccctattggtgttccgtattccgtttcctttaagaggtat 15049236

                                                                            
Query: 514      cacatggatcatcatcgatacctcggaagtgatggcatcgacgtggatattccaactgat 573
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049237 cacatggatcatcatcgatacctcggaagtgatggcatcgacgtggatattccaactgat 15049296

                                                                            
Query: 574      ttcgaaggctggttcttctgcaccactttcagaaagtttatgtgggttattcttcagccg 633
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049297 ttcgaaggctggttcttctgcaccactttcagaaagtttatgtgggttattcttcagccg 15049356

                                                                            
Query: 634      ctcttttacgcctttcgacctctgttcatcaaccccaagccaatttcctatctggagatt 693
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049357 ctcttttatgcctttcgacctctgttcatcaaccccaagccaatttcctatctggagatt 15049416

                                                                            
Query: 694      atcaatactgtgatccaggtcacttttgacgttgtgatttactacgtcttgggaatgaaa 753
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049417 atcaatactgtgatccaggtcacttttgacgttgtgatttactacgtcttgggaatgaaa 15049476

                                                                            
Query: 754      tctttagtctacatgctgtcagcatccttacttggtctaggtttgcacccaatttctgga 813
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049477 tctttagtctacatgctgtcagcatccttacttggtctaggtttgcacccaatttctgga 15049536

                                                                            
Query: 814      cattttatagctgaacattacatgttcttaaaagggcatgaaacttactcgtattacggg 873
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049537 cattttatagctgaacattacatgttcttaaaagggcatgaaacttactcgtattacggg 15049596

                                                                            
Query: 874      cctctgaacttactcaccttcaacgtgggctaccacaacgagcaccatgacttccccaac 933
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049597 cctctgaacttactcaccttcaacgtgggctaccacaacgagcaccatgacttccccaac 15049656

                                          
Query: 934      attcccggg-aaaaccttcccctggt 958
                ||||||||| ||||||||||||||||
Sbjct: 15049657 attcccgggaaaaaccttcccctggt 15049682



 Score =  281 bits (142), Expect = 4e-73
 Identities = 190/214 (88%)
 Strand = Plus / Plus

                                                                            
Query: 1        ctccgtggctccgccctccgccggctgacacgagtcgggagctgccgccgctgccgtcgc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15042534 ctccgtggctccgccctccgccggctgacacgagtcgggagctgccgccgctgccgtcgc 15042593

                                                                            
Query: 61       cgctttcgccttcacctcggagatcgagagcggggagcaggctcgcgannnnnnnnnnnn 120
                ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 15042594 cgctttcgccttcacctcggagatcgagagcggggagcaggctcgcgagccgccgccgcc 15042653

                                                                            
Query: 121      nnnnnnnnnnnnatggggaaccgagttgcgcgggaagacttcgagtgggtctacactgac 180
                            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15042654 tccgtcgccgccatggggaaccgagttgcgcgggaagacttcgagtgggtctacactgac 15042713

                                                  
Query: 181      cagccccacgccagtcggcgccaggagatcctgg 214
                ||||||||||||||||||||||||||||||||||
Sbjct: 15042714 cagccccacgccagtcggcgccaggagatcctgg 15042747



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 68/74 (91%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                            
Query: 956      ggtgaggaaaatagcaacggagtactatgaccacct-ccccactatattccctggat-aa 1013
                |||||||||||||||| |||||||||||||| |||| |||||||||| | ||||||| ||
Sbjct: 15052734 ggtgaggaaaatagcagcggagtactatgacaacctcccccactataattcctggataaa 15052793

                              
Query: 1014     agtactgtatgatt 1027
                ||||||||||||||
Sbjct: 15052794 agtactgtatgatt 15052807


>Sscrofa_Chr07 
||          Length = 134764511

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                        
Query: 887       tcaccttcaacgtgggctaccacaacgagcaccatgacttccccaacattcccgg 941
                 |||||||||||||||||||||||   |||||||| |||||||||| ||| |||||
Sbjct: 128593568 tcaccttcaacgtgggctaccacgtggagcaccacgacttccccagcatccccgg 128593622


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,830,802
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 5
Length of query: 1027
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1006
Effective length of database: 2,808,413,156
Effective search space: 2825263634936
Effective search space used: 2825263634936
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)