Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008190
(1027 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029461.1| sphingolipid delta(4)-desaturase DES1 [Bos t... 563 e-161
Alignment gi|NP_001069719.1| sphingolipid delta(4)-desaturase/C4-hydroxyl... 414 e-120
>ref|NP_001029461.1| sphingolipid delta(4)-desaturase DES1 [Bos taurus].
Length = 323
Score = 563 bits (1452), Expect = e-161
Identities = 262/299 (87%), Positives = 278/299 (92%), Gaps = 1/299 (0%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MGNRV+REDFEWVYTDQPHA+RRQEILAKYPEIKSLMKPDSNLIWIVI+MVL+Q +AFYL
Sbjct: 1 MGNRVSREDFEWVYTDQPHATRRQEILAKYPEIKSLMKPDSNLIWIVIMMVLTQFVAFYL 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
VKDLDWKWV+FWAYAFGSC+NHSMTLAIHEVSHNSAFGH K MWNRWFG+FANLPIGVPY
Sbjct: 61 VKDLDWKWVLFWAYAFGSCVNHSMTLAIHEVSHNSAFGHYKAMWNRWFGIFANLPIGVPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
SVSFKRYHMDHHRYLG+DGIDVDIPTDFEGWFFCTTFRKF+WVILQPLFYAFRPLFINPK
Sbjct: 121 SVSFKRYHMDHHRYLGADGIDVDIPTDFEGWFFCTTFRKFIWVILQPLFYAFRPLFINPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
PISYLEIINTVIQ+TFD+V+YYVLG+KSLVYML+ASL GLGLHPISGHFIAEHYMFLKGH
Sbjct: 181 PISYLEIINTVIQITFDIVVYYVLGVKSLVYMLAASLFGLGLHPISGHFIAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGK+ P K P Y S KVLYD
Sbjct: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYD 299
>ref|NP_001069719.1| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 [Bos taurus].
Length = 323
Score = 414 bits (1063), Expect(2) = e-120
Identities = 178/274 (64%), Positives = 222/274 (81%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MGNR R DFEWVYTDQPH RR+E+LAKYP IK+LM+PD L W V MVL+QL+A +L
Sbjct: 1 MGNRAGRSDFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPYLKWTVTAMVLAQLLACWL 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
+ L W+W+ FWAYAFG C+NHS+TLAIH++SHN+AFG +P NRWF +FANLP+G+PY
Sbjct: 61 AQGLAWRWLFFWAYAFGGCVNHSLTLAIHDISHNTAFGTGRPSRNRWFAIFANLPVGLPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
+ SFK+YH+DHHRYLG DG+DVD+PT FEG FCT RK +W+ LQP FY RPL ++PK
Sbjct: 121 AASFKKYHVDHHRYLGGDGLDVDVPTYFEGRLFCTPARKLLWLALQPFFYTLRPLCVHPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
++ +E+ NT++Q+ D IY + G+K +VY+L++SLLGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 AMTRMELCNTLVQLAADATIYALWGLKPMVYLLASSLLGLGLHPISGHFVAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
ETYSYYGPLN +TFNVGYH EHHDFP+IP P
Sbjct: 241 ETYSYYGPLNWITFNVGYHMEHHDFPSIPSCNLP 274
Score = 37.7 bits (86), Expect(2) = e-120
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 945 NLPLVRKIATEYYDHLP 995
NLPLVRKIA EYYDHLP
Sbjct: 272 NLPLVRKIAPEYYDHLP 288
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,120,448
Number of extensions: 935353
Number of successful extensions: 2074
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2071
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008190
(1027 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547516.2| PREDICTED: similar to degenerative spermatocyte... 499 e-141
Alignment gi|XP_547976.2| PREDICTED: similar to sphingolipid C4-hydroxyla... 406 e-117
>ref|XP_547516.2| PREDICTED: similar to degenerative spermatocyte homolog 1, lipid
desaturase [Canis familiaris].
Length = 434
Score = 499 bits (1284), Expect = e-141
Identities = 229/276 (82%), Positives = 251/276 (90%), Gaps = 1/276 (0%)
Frame = +1
Query: 202 QEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDWKWVIFWAYAFGSCINHS 381
+++++KYPEIKSLMKPD NLIWI+ +MVL+QL+AFYLVKDLDWKWVIFWAYAFGSCINHS
Sbjct: 135 KKLMSKYPEIKSLMKPDPNLIWIITMMVLTQLVAFYLVKDLDWKWVIFWAYAFGSCINHS 194
Query: 382 MTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKRYHMDHHRYLGSDGIDVD 561
+TLAIHEVSHNSAFGH + MWNRWFG+FANLPIGVPYS+SFKRYHMDHHRYLG DGIDVD
Sbjct: 195 VTLAIHEVSHNSAFGHYRAMWNRWFGMFANLPIGVPYSISFKRYHMDHHRYLGGDGIDVD 254
Query: 562 IPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLEIINTVIQVTFDVVIYYV 741
IPTDFEGWFFCTTFRKF+WV+LQPLFYAFRPLFINPKPI+YLEIINTVIQV FD+ +YYV
Sbjct: 255 IPTDFEGWFFCTTFRKFIWVVLQPLFYAFRPLFINPKPITYLEIINTVIQVIFDITVYYV 314
Query: 742 LGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH 921
G+KSLVYML+ASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH
Sbjct: 315 FGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHH 374
Query: 922 DFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
DFPNIPGK+ P K P Y S +VLYD
Sbjct: 375 DFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIRVLYD 410
>ref|XP_547976.2| PREDICTED: similar to sphingolipid C4-hydroxylase/delta
4-desaturase [Canis familiaris].
Length = 323
Score = 406 bits (1044), Expect(2) = e-117
Identities = 172/274 (62%), Positives = 222/274 (81%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MGN R DFEWVYTDQPH RR+E+LAKYP IK+LM+PD L W V+ +VL+QL+A L
Sbjct: 1 MGNSAGRADFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPRLKWTVLALVLAQLLACRL 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
++L W+W++FWAYAFG C+NHS+TLAIH++SHN+AFG + NRW VFANLP+G+PY
Sbjct: 61 ARELPWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGSGRAAHNRWLAVFANLPVGLPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
+ SFK+YH+DHHRYLG DG+DVD+PT EG FCT RK +W+ LQPLFY+ RPL ++PK
Sbjct: 121 AASFKKYHVDHHRYLGGDGLDVDVPTRLEGRLFCTPARKLLWLALQPLFYSLRPLCVHPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
++ +E++N ++Q+ D ++ + G+K + Y+L++SLLGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 ALTRMEVLNALVQLAADAALFALWGLKPVAYLLASSLLGLGLHPISGHFVAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
ETYSYYGPLN +TFNVGYH EHHDFP+IPG P
Sbjct: 241 ETYSYYGPLNWITFNVGYHVEHHDFPSIPGCNLP 274
Score = 35.4 bits (80), Expect(2) = e-117
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 945 NLPLVRKIATEYYDHLP 995
NLP VRKIA EYYDHLP
Sbjct: 272 NLPQVRKIAPEYYDHLP 288
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,717,136
Number of extensions: 953416
Number of successful extensions: 2276
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2275
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008190
(1027 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357686.1| PREDICTED: sphingolipid delta(4)-desaturase ... 586 e-168
>ref|XP_003357686.1| PREDICTED: sphingolipid delta(4)-desaturase DES1 [Sus scrofa].
Length = 323
Score = 586 bits (1511), Expect = e-168
Identities = 281/299 (93%), Positives = 281/299 (93%), Gaps = 1/299 (0%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL
Sbjct: 1 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY
Sbjct: 61 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK
Sbjct: 121 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH
Sbjct: 181 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGK P K P Y S KVLYD
Sbjct: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKNLPLVRKIAAEYYDNLPHYNSWIKVLYD 299
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,388,439
Number of extensions: 622522
Number of successful extensions: 1306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1304
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008190
(1027 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031879.1| sphingolipid delta(4)-desaturase DES1 [Mus musc... 531 e-151
Alignment gi|NP_081575.2| sphingolipid delta(4)-desaturase/C4-hydroxylase... 426 e-123
Alignment gi|NP_001028991.1| hypothetical protein LOC619326 [Mus musculus]. 436 e-122
Alignment gi|NP_001164473.1| sphingolipid delta(4)-desaturase/C4-hydroxyl... 426 e-119
>ref|NP_031879.1| sphingolipid delta(4)-desaturase DES1 [Mus musculus].
Length = 323
Score = 531 bits (1369), Expect = e-151
Identities = 244/299 (81%), Positives = 269/299 (89%), Gaps = 1/299 (0%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MG+RV+RE+FEWVYTDQPHA+RR+EILAKYPEIKSLMKPD NLIWIV +M+L QL +FYL
Sbjct: 1 MGSRVSREEFEWVYTDQPHAARRKEILAKYPEIKSLMKPDHNLIWIVAMMLLVQLASFYL 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
VKDLDWKWVIFW+Y FGSC+NHSMTLAIHE+SHN FGH K +WNRWFG+FANL +GVPY
Sbjct: 61 VKDLDWKWVIFWSYVFGSCLNHSMTLAIHEISHNFPFGHHKALWNRWFGMFANLSLGVPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
S+SFKRYHMDHHRYLG+D IDVDIPTDFEGWFFCTTFRKF+WVILQPLFYAFRPLFINPK
Sbjct: 121 SISFKRYHMDHHRYLGADKIDVDIPTDFEGWFFCTTFRKFVWVILQPLFYAFRPLFINPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
PI+YLEIINTVIQ+TFD++IYYV G+KSLVYML+A+LLGLGLHPISGHFIAEHYMFLKGH
Sbjct: 181 PITYLEIINTVIQITFDIIIYYVFGVKSLVYMLAATLLGLGLHPISGHFIAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
ETYSYYGPLNLLTFNVGYHNEHHDFPN+PGK P K P Y S KVLYD
Sbjct: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNVPGKNLPMVRKIASEYYDDLPHYNSWIKVLYD 299
>ref|NP_081575.2| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 isoform 1 [Mus
musculus].
Length = 323
Score = 426 bits (1094), Expect(2) = e-123
Identities = 183/274 (66%), Positives = 229/274 (83%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MGN AR DFEWVY+DQPH RR+E+LAKYP IK+LM+PD ++ W V MVL Q++A +L
Sbjct: 1 MGNSAARSDFEWVYSDQPHTQRRKEMLAKYPAIKALMRPDPHIKWTVSGMVLVQVLACWL 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
V+ L W+W++FWAYAFG CINHS+TLAIH++SHN+AFG NRWF +FANLPIG+PY
Sbjct: 61 VRGLSWRWLLFWAYAFGGCINHSLTLAIHDISHNTAFGTSCVSRNRWFAIFANLPIGLPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
+ SFK+YH+DHHRYLG DG+DVDIPT+FEGWFFCT RK +W++LQP FY+ RPL +NPK
Sbjct: 121 ATSFKKYHVDHHRYLGGDGLDVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
++ +EI+N ++Q+ FDV I+ + G+K +VY+L +SLLGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 VVTRMEILNALVQLAFDVTIFALWGIKPIVYLLGSSLLGLGLHPISGHFVAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
ETYSYYGPLN +TFNVGYH EHHDFP+IPG P
Sbjct: 241 ETYSYYGPLNWITFNVGYHMEHHDFPSIPGYYLP 274
Score = 35.4 bits (80), Expect(2) = e-123
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +3
Query: 948 LPLVRKIATEYYDHLP 995
LPLVRKIA EYYDHLP
Sbjct: 273 LPLVRKIAPEYYDHLP 288
>ref|NP_001028991.1| hypothetical protein LOC619326 [Mus musculus].
Length = 320
Score = 436 bits (1120), Expect = e-122
Identities = 200/292 (68%), Positives = 232/292 (79%), Gaps = 1/292 (0%)
Frame = +1
Query: 154 EDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYLVKDLDWK 333
ED EWVY D+ H RR+EILAKYPEIKSLMKPD NLIWI+ +++L QL YLVKDL+WK
Sbjct: 8 EDAEWVYNDRLHNDRRREILAKYPEIKSLMKPDPNLIWIITIIILIQLALLYLVKDLEWK 67
Query: 334 WVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPYSVSFKRY 513
WVIF AY FG INHS+ +A HE+SHN FGH K +WNRWFG+FANLPIG+P S+SFK+Y
Sbjct: 68 WVIFCAYVFGGSINHSLIIASHEISHNFPFGHRKALWNRWFGIFANLPIGIPCSISFKKY 127
Query: 514 HMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPKPISYLEI 693
H DHHR+LG DG+DV +P EGWFFCT +RK +W+ QPLF FR LFIN KPISYLEI
Sbjct: 128 HTDHHRFLGVDGVDVGVPHYLEGWFFCTAYRKLVWIAFQPLFITFRLLFINRKPISYLEI 187
Query: 694 INTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGHETYSYYG 873
INTV+Q+TFD+++YYV G+KSLVYML AS+LGLGLHPISG+ I +HYMFLK ET+SYYG
Sbjct: 188 INTVVQITFDIIVYYVFGVKSLVYMLVASMLGLGLHPISGNLIGDHYMFLKDQETFSYYG 247
Query: 874 PLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
PLNLLTFNVGYHNEHHDFPNIPGK P K P + S KVLYD
Sbjct: 248 PLNLLTFNVGYHNEHHDFPNIPGKDLPLVRKIAAEYYDKLPHHISWIKVLYD 299
>ref|NP_001164473.1| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 isoform 2 [Mus
musculus].
Length = 286
Score = 426 bits (1094), Expect = e-119
Identities = 183/274 (66%), Positives = 229/274 (83%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MGN AR DFEWVY+DQPH RR+E+LAKYP IK+LM+PD ++ W V MVL Q++A +L
Sbjct: 1 MGNSAARSDFEWVYSDQPHTQRRKEMLAKYPAIKALMRPDPHIKWTVSGMVLVQVLACWL 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
V+ L W+W++FWAYAFG CINHS+TLAIH++SHN+AFG NRWF +FANLPIG+PY
Sbjct: 61 VRGLSWRWLLFWAYAFGGCINHSLTLAIHDISHNTAFGTSCVSRNRWFAIFANLPIGLPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
+ SFK+YH+DHHRYLG DG+DVDIPT+FEGWFFCT RK +W++LQP FY+ RPL +NPK
Sbjct: 121 ATSFKKYHVDHHRYLGGDGLDVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
++ +EI+N ++Q+ FDV I+ + G+K +VY+L +SLLGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 VVTRMEILNALVQLAFDVTIFALWGIKPIVYLLGSSLLGLGLHPISGHFVAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
ETYSYYGPLN +TFNVGYH EHHDFP+IPG P
Sbjct: 241 ETYSYYGPLNWITFNVGYHMEHHDFPSIPGYYLP 274
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,504,352
Number of extensions: 798464
Number of successful extensions: 1865
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1862
Number of HSP's successfully gapped: 5
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008190
(1027 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003667.1| sphingolipid delta(4)-desaturase DES1 [Homo sap... 542 e-154
Alignment gi|NP_996801.2| sphingolipid delta(4)-desaturase/C4-hydroxylase... 421 e-122
>ref|NP_003667.1| sphingolipid delta(4)-desaturase DES1 [Homo sapiens].
Length = 323
Score = 542 bits (1397), Expect = e-154
Identities = 250/299 (83%), Positives = 274/299 (91%), Gaps = 1/299 (0%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MG+RV+REDFEWVYTDQPHA RR+EILAKYPEIKSLMKPD NLIWI+I+MVL+QL AFY+
Sbjct: 1 MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
VKDLDWKWVIF AYAFGSCINHSMTLAIHE++HN+AFG+CK MWNRWFG+FANLPIG+PY
Sbjct: 61 VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
S+SFKRYHMDHHRYLG+DG+DVDIPTDFEGWFFCT FRKF+WVILQPLFYAFRPLFINPK
Sbjct: 121 SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
PI+YLE+INTV QVTFD++IYY LG+KSLVYML+ASLLGLGLHPISGHFIAEHYMFLKGH
Sbjct: 181 PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFPW*GK*QRSTMTTSPLY-SLDKVLYD 1026
ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGK+ P K P Y S KVLYD
Sbjct: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYD 299
>ref|NP_996801.2| sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 [Homo
sapiens].
Length = 323
Score = 421 bits (1081), Expect(2) = e-122
Identities = 177/274 (64%), Positives = 228/274 (83%)
Frame = +1
Query: 133 MGNRVAREDFEWVYTDQPHASRRQEILAKYPEIKSLMKPDSNLIWIVILMVLSQLIAFYL 312
MGN +R DFEWVYTDQPH RR+EILAKYP IK+LM+PD L W V+++VL Q++A +L
Sbjct: 1 MGNSASRSDFEWVYTDQPHTQRRKEILAKYPAIKALMRPDPRLKWAVLVLVLVQMLACWL 60
Query: 313 VKDLDWKWVIFWAYAFGSCINHSMTLAIHEVSHNSAFGHCKPMWNRWFGVFANLPIGVPY 492
V+ L W+W++FWAYAFG C+NHS+TLAIH++SHN+AFG + NRW VFANLP+GVPY
Sbjct: 61 VRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAARNRWLAVFANLPVGVPY 120
Query: 493 SVSFKRYHMDHHRYLGSDGIDVDIPTDFEGWFFCTTFRKFMWVILQPLFYAFRPLFINPK 672
+ SFK+YH+DHHRYLG DG+DVD+PT EGWFFCT RK +W++LQP FY+ RPL ++PK
Sbjct: 121 AASFKKYHVDHHRYLGGDGLDVDVPTRLEGWFFCTPARKLLWLVLQPFFYSLRPLCVHPK 180
Query: 673 PISYLEIINTVIQVTFDVVIYYVLGMKSLVYMLSASLLGLGLHPISGHFIAEHYMFLKGH 852
++ +E++NT++Q+ D+ I+ + G+K +VY+L++S LGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 AVTRMEVLNTLVQLAADLAIFALWGLKPVVYLLASSFLGLGLHPISGHFVAEHYMFLKGH 240
Query: 853 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKTFP 954
ETYSYYGPLN +TFNVGYH EHHDFP+IPG P
Sbjct: 241 ETYSYYGPLNWITFNVGYHVEHHDFPSIPGYNLP 274
Score = 37.7 bits (86), Expect(2) = e-122
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 945 NLPLVRKIATEYYDHLP 995
NLPLVRKIA EYYDHLP
Sbjct: 272 NLPLVRKIAPEYYDHLP 288
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,009,784
Number of extensions: 942058
Number of successful extensions: 2053
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2052
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008190
(1027 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1447 0.0
Sscrofa_Chr07 62 6e-07
>Sscrofa_Chr10
|| Length = 79102373
Score = 1447 bits (730), Expect = 0.0
Identities = 743/746 (99%), Gaps = 1/746 (0%)
Strand = Plus / Plus
Query: 214 gcaaagtatcccgagataaaatctttgatgaaacctgattccaacttgatatggattgta 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15048937 gcaaagtatcccgagataaaatctttgatgaaacctgattccaacttgatatggattgta 15048996
Query: 274 attttgatggttctcagtcagttaattgcattttatttagtaaaggacttggactggaaa 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15048997 attttgatggttctcagtcagttaattgcattttatttagtaaaggacttggactggaaa 15049056
Query: 334 tgggtcatattttgggcatatgcctttggaagctgcattaaccattccatgactctggct 393
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 15049057 tgggtcatattttgggcatatgcctttggaagctgcattaatcattccatgactctggct 15049116
Query: 394 attcatgaagtgtcccacaatagtgcctttggccactgcaaacctatgtggaatcgttgg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049117 attcatgaagtgtcccacaatagtgcctttggccactgcaaacctatgtggaatcgttgg 15049176
Query: 454 tttggagtatttgctaatctccctattggtgttccgtattccgtttcctttaagaggtat 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049177 tttggagtatttgctaatctccctattggtgttccgtattccgtttcctttaagaggtat 15049236
Query: 514 cacatggatcatcatcgatacctcggaagtgatggcatcgacgtggatattccaactgat 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049237 cacatggatcatcatcgatacctcggaagtgatggcatcgacgtggatattccaactgat 15049296
Query: 574 ttcgaaggctggttcttctgcaccactttcagaaagtttatgtgggttattcttcagccg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049297 ttcgaaggctggttcttctgcaccactttcagaaagtttatgtgggttattcttcagccg 15049356
Query: 634 ctcttttacgcctttcgacctctgttcatcaaccccaagccaatttcctatctggagatt 693
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049357 ctcttttatgcctttcgacctctgttcatcaaccccaagccaatttcctatctggagatt 15049416
Query: 694 atcaatactgtgatccaggtcacttttgacgttgtgatttactacgtcttgggaatgaaa 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049417 atcaatactgtgatccaggtcacttttgacgttgtgatttactacgtcttgggaatgaaa 15049476
Query: 754 tctttagtctacatgctgtcagcatccttacttggtctaggtttgcacccaatttctgga 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049477 tctttagtctacatgctgtcagcatccttacttggtctaggtttgcacccaatttctgga 15049536
Query: 814 cattttatagctgaacattacatgttcttaaaagggcatgaaacttactcgtattacggg 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049537 cattttatagctgaacattacatgttcttaaaagggcatgaaacttactcgtattacggg 15049596
Query: 874 cctctgaacttactcaccttcaacgtgggctaccacaacgagcaccatgacttccccaac 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049597 cctctgaacttactcaccttcaacgtgggctaccacaacgagcaccatgacttccccaac 15049656
Query: 934 attcccggg-aaaaccttcccctggt 958
||||||||| ||||||||||||||||
Sbjct: 15049657 attcccgggaaaaaccttcccctggt 15049682
Score = 281 bits (142), Expect = 4e-73
Identities = 190/214 (88%)
Strand = Plus / Plus
Query: 1 ctccgtggctccgccctccgccggctgacacgagtcgggagctgccgccgctgccgtcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15042534 ctccgtggctccgccctccgccggctgacacgagtcgggagctgccgccgctgccgtcgc 15042593
Query: 61 cgctttcgccttcacctcggagatcgagagcggggagcaggctcgcgannnnnnnnnnnn 120
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15042594 cgctttcgccttcacctcggagatcgagagcggggagcaggctcgcgagccgccgccgcc 15042653
Query: 121 nnnnnnnnnnnnatggggaaccgagttgcgcgggaagacttcgagtgggtctacactgac 180
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15042654 tccgtcgccgccatggggaaccgagttgcgcgggaagacttcgagtgggtctacactgac 15042713
Query: 181 cagccccacgccagtcggcgccaggagatcctgg 214
||||||||||||||||||||||||||||||||||
Sbjct: 15042714 cagccccacgccagtcggcgccaggagatcctgg 15042747
Score = 83.8 bits (42), Expect = 2e-13
Identities = 68/74 (91%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 956 ggtgaggaaaatagcaacggagtactatgaccacct-ccccactatattccctggat-aa 1013
|||||||||||||||| |||||||||||||| |||| |||||||||| | ||||||| ||
Sbjct: 15052734 ggtgaggaaaatagcagcggagtactatgacaacctcccccactataattcctggataaa 15052793
Query: 1014 agtactgtatgatt 1027
||||||||||||||
Sbjct: 15052794 agtactgtatgatt 15052807
>Sscrofa_Chr07
|| Length = 134764511
Score = 61.9 bits (31), Expect = 6e-07
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 887 tcaccttcaacgtgggctaccacaacgagcaccatgacttccccaacattcccgg 941
||||||||||||||||||||||| |||||||| |||||||||| ||| |||||
Sbjct: 128593568 tcaccttcaacgtgggctaccacgtggagcaccacgacttccccagcatccccgg 128593622
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,830,802
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 5
Length of query: 1027
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1006
Effective length of database: 2,808,413,156
Effective search space: 2825263634936
Effective search space used: 2825263634936
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)