Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008193
(1129 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068637.2| sorbin and SH3 domain-containing protein 1 [... 185 6e-47
>ref|NP_001068637.2| sorbin and SH3 domain-containing protein 1 [Bos taurus].
Length = 750
Score = 185 bits (470), Expect = 6e-47
Identities = 94/116 (81%), Positives = 99/116 (85%), Gaps = 9/116 (7%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECD GASKAVVNGLA GSNG+DKD DPT+ICTGKGAVTLRASSSYREIPS SPVSP+
Sbjct: 1 MSSECDAGASKAVVNGLAPGSNGQDKDMDPTRICTGKGAVTLRASSSYREIPSSSPVSPQ 60
Query: 371 EAPQQERK---------ADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
E P+QERK ADEWRL S+ADANGNAQPSSLAAKGYRSVHPS PS KPQ
Sbjct: 61 ETPKQERKTVLESENSSADEWRLSSNADANGNAQPSSLAAKGYRSVHPSLPSSKPQ 116
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,398,057
Number of extensions: 1442690
Number of successful extensions: 5736
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5725
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008193
(1129 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,712,969
Number of extensions: 1232047
Number of successful extensions: 5734
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5711
Number of HSP's successfully gapped: 0
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008193
(1129 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924696.3| PREDICTED: sorbin and SH3 domain-containing ... 212 3e-55
>ref|XP_001924696.3| PREDICTED: sorbin and SH3 domain-containing protein 1 [Sus scrofa].
Length = 433
Score = 212 bits (539), Expect = 3e-55
Identities = 107/116 (92%), Positives = 107/116 (92%), Gaps = 9/116 (7%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR
Sbjct: 1 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 60
Query: 371 EAPQQERK---------ADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
EAPQQERK ADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ
Sbjct: 61 EAPQQERKAVLESENSTADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 116
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,718,716
Number of extensions: 1324088
Number of successful extensions: 3676
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3655
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008193
(1129 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030136.1| sorbin and SH3 domain-containing protein 1 i... 172 4e-43
Alignment gi|NP_001030135.1| sorbin and SH3 domain-containing protein 1 i... 172 4e-43
Alignment gi|NP_848139.1| sorbin and SH3 domain-containing protein 1 isof... 172 4e-43
Alignment gi|NP_033192.2| sorbin and SH3 domain-containing protein 1 isof... 172 4e-43
Alignment gi|NP_001030134.1| sorbin and SH3 domain-containing protein 1 i... 156 2e-38
>ref|NP_001030136.1| sorbin and SH3 domain-containing protein 1 isoform 5 [Mus
musculus].
Length = 740
Score = 172 bits (436), Expect = 4e-43
Identities = 83/107 (77%), Positives = 92/107 (85%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECDVG+SKAVVNGLA G++G DKD DPTKICTGKG VTLRASSSYR PS SPVSP+
Sbjct: 1 MSSECDVGSSKAVVNGLASGNHGPDKDMDPTKICTGKGTVTLRASSSYRGTPSSSPVSPQ 60
Query: 371 EAPQQERKADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
E+P+ E K+DEW+L S AD NGNAQPS LAAKGYRSVHPS +DKPQ
Sbjct: 61 ESPKHESKSDEWKLSSSADTNGNAQPSPLAAKGYRSVHPSLSADKPQ 107
>ref|NP_001030135.1| sorbin and SH3 domain-containing protein 1 isoform 4 [Mus
musculus].
Length = 724
Score = 172 bits (436), Expect = 4e-43
Identities = 83/107 (77%), Positives = 92/107 (85%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECDVG+SKAVVNGLA G++G DKD DPTKICTGKG VTLRASSSYR PS SPVSP+
Sbjct: 1 MSSECDVGSSKAVVNGLASGNHGPDKDMDPTKICTGKGTVTLRASSSYRGTPSSSPVSPQ 60
Query: 371 EAPQQERKADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
E+P+ E K+DEW+L S AD NGNAQPS LAAKGYRSVHPS +DKPQ
Sbjct: 61 ESPKHESKSDEWKLSSSADTNGNAQPSPLAAKGYRSVHPSLSADKPQ 107
>ref|NP_848139.1| sorbin and SH3 domain-containing protein 1 isoform 2 [Mus
musculus].
Length = 938
Score = 172 bits (436), Expect = 4e-43
Identities = 83/107 (77%), Positives = 92/107 (85%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECDVG+SKAVVNGLA G++G DKD DPTKICTGKG VTLRASSSYR PS SPVSP+
Sbjct: 1 MSSECDVGSSKAVVNGLASGNHGPDKDMDPTKICTGKGTVTLRASSSYRGTPSSSPVSPQ 60
Query: 371 EAPQQERKADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
E+P+ E K+DEW+L S AD NGNAQPS LAAKGYRSVHPS +DKPQ
Sbjct: 61 ESPKHESKSDEWKLSSSADTNGNAQPSPLAAKGYRSVHPSLSADKPQ 107
>ref|NP_033192.2| sorbin and SH3 domain-containing protein 1 isoform 1 [Mus
musculus].
Length = 684
Score = 172 bits (436), Expect = 4e-43
Identities = 83/107 (77%), Positives = 92/107 (85%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECDVG+SKAVVNGLA G++G DKD DPTKICTGKG VTLRASSSYR PS SPVSP+
Sbjct: 1 MSSECDVGSSKAVVNGLASGNHGPDKDMDPTKICTGKGTVTLRASSSYRGTPSSSPVSPQ 60
Query: 371 EAPQQERKADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
E+P+ E K+DEW+L S AD NGNAQPS LAAKGYRSVHPS +DKPQ
Sbjct: 61 ESPKHESKSDEWKLSSSADTNGNAQPSPLAAKGYRSVHPSLSADKPQ 107
>ref|NP_001030134.1| sorbin and SH3 domain-containing protein 1 isoform 3 [Mus
musculus].
Length = 714
Score = 156 bits (395), Expect = 2e-38
Identities = 83/137 (60%), Positives = 92/137 (67%), Gaps = 30/137 (21%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDK------------------------------DTDP 280
MSSECDVG+SKAVVNGLA G++G DK D DP
Sbjct: 1 MSSECDVGSSKAVVNGLASGNHGPDKADPFRARSISAVKIIPVKTVKSPSGLVLPPDMDP 60
Query: 281 TKICTGKGAVTLRASSSYREIPSGSPVSPREAPQQERKADEWRLPSHADANGNAQPSSLA 460
TKICTGKG VTLRASSSYR PS SPVSP+E+P+ E K+DEW+L S AD NGNAQPS LA
Sbjct: 61 TKICTGKGTVTLRASSSYRGTPSSSPVSPQESPKHESKSDEWKLSSSADTNGNAQPSPLA 120
Query: 461 AKGYRSVHPSFPSDKPQ 511
AKGYRSVHPS +DKPQ
Sbjct: 121 AKGYRSVHPSLSADKPQ 137
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,783,141
Number of extensions: 992845
Number of successful extensions: 4461
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4449
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008193
(1129 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030129.1| sorbin and SH3 domain-containing protein 1 i... 172 4e-43
Alignment gi|NP_006425.2| sorbin and SH3 domain-containing protein 1 isof... 172 4e-43
Alignment gi|NP_056200.1| sorbin and SH3 domain-containing protein 1 isof... 167 2e-41
Alignment gi|NP_079267.1| sorbin and SH3 domain-containing protein 1 isof... 150 2e-36
Alignment gi|NP_001030128.1| sorbin and SH3 domain-containing protein 1 i... 150 2e-36
Alignment gi|NP_001030127.1| sorbin and SH3 domain-containing protein 1 i... 150 2e-36
Alignment gi|NP_001030126.1| sorbin and SH3 domain-containing protein 1 i... 150 2e-36
>ref|NP_001030129.1| sorbin and SH3 domain-containing protein 1 isoform 7 [Homo
sapiens].
Length = 740
Score = 172 bits (437), Expect = 4e-43
Identities = 87/107 (81%), Positives = 91/107 (85%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECD G SKAV+NGLA GSNG+DKD DPTKICTGKGAVTLRASSSYRE PS SP SP+
Sbjct: 1 MSSECD-GGSKAVMNGLAPGSNGQDKDMDPTKICTGKGAVTLRASSSYRETPSSSPASPQ 59
Query: 371 EAPQQERKADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
E Q E K DEWRL S ADANGNAQPSSLAAKGYRSVHP+ PSDK Q
Sbjct: 60 ETRQHESKPDEWRLSSSADANGNAQPSSLAAKGYRSVHPNLPSDKSQ 106
>ref|NP_006425.2| sorbin and SH3 domain-containing protein 1 isoform 1 [Homo
sapiens].
Length = 684
Score = 172 bits (437), Expect = 4e-43
Identities = 87/107 (81%), Positives = 91/107 (85%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECD G SKAV+NGLA GSNG+DKD DPTKICTGKGAVTLRASSSYRE PS SP SP+
Sbjct: 1 MSSECD-GGSKAVMNGLAPGSNGQDKDMDPTKICTGKGAVTLRASSSYRETPSSSPASPQ 59
Query: 371 EAPQQERKADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
E Q E K DEWRL S ADANGNAQPSSLAAKGYRSVHP+ PSDK Q
Sbjct: 60 ETRQHESKPDEWRLSSSADANGNAQPSSLAAKGYRSVHPNLPSDKSQ 106
>ref|NP_056200.1| sorbin and SH3 domain-containing protein 1 isoform 2 [Homo
sapiens].
Length = 816
Score = 167 bits (422), Expect = 2e-41
Identities = 88/116 (75%), Positives = 92/116 (79%), Gaps = 9/116 (7%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDKDTDPTKICTGKGAVTLRASSSYREIPSGSPVSPR 370
MSSECD G SKAV+NGLA GSNG+DKD DPTKICTGKGAVTLRASSSYRE PS SP SP+
Sbjct: 1 MSSECD-GGSKAVMNGLAPGSNGQDKDMDPTKICTGKGAVTLRASSSYRETPSSSPASPQ 59
Query: 371 EAPQQERK---------ADEWRLPSHADANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
E Q E K ADEWRL S ADANGNAQPSSLAAKGYRSVHP+ PSDK Q
Sbjct: 60 ETRQHESKPGLEPEPSSADEWRLSSSADANGNAQPSSLAAKGYRSVHPNLPSDKSQ 115
>ref|NP_079267.1| sorbin and SH3 domain-containing protein 1 isoform 6 [Homo
sapiens].
Length = 781
Score = 150 bits (379), Expect = 2e-36
Identities = 88/148 (59%), Positives = 92/148 (62%), Gaps = 41/148 (27%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDK--------------------------------DT 274
MSSECD G SKAV+NGLA GSNG+DK D
Sbjct: 1 MSSECD-GGSKAVMNGLAPGSNGQDKATADPLRARSISAVKIIPVKTVKNASGLVLPTDM 59
Query: 275 DPTKICTGKGAVTLRASSSYREIPSGSPVSPREAPQQERK---------ADEWRLPSHAD 427
DPTKICTGKGAVTLRASSSYRE PS SP SP+E Q E K ADEWRL S AD
Sbjct: 60 DPTKICTGKGAVTLRASSSYRETPSSSPASPQETRQHESKPGLEPEPSSADEWRLSSSAD 119
Query: 428 ANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
ANGNAQPSSLAAKGYRSVHP+ PSDK Q
Sbjct: 120 ANGNAQPSSLAAKGYRSVHPNLPSDKSQ 147
>ref|NP_001030128.1| sorbin and SH3 domain-containing protein 1 isoform 5 [Homo
sapiens].
Length = 905
Score = 150 bits (379), Expect = 2e-36
Identities = 88/148 (59%), Positives = 92/148 (62%), Gaps = 41/148 (27%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDK--------------------------------DT 274
MSSECD G SKAV+NGLA GSNG+DK D
Sbjct: 1 MSSECD-GGSKAVMNGLAPGSNGQDKATADPLRARSISAVKIIPVKTVKNASGLVLPTDM 59
Query: 275 DPTKICTGKGAVTLRASSSYREIPSGSPVSPREAPQQERK---------ADEWRLPSHAD 427
DPTKICTGKGAVTLRASSSYRE PS SP SP+E Q E K ADEWRL S AD
Sbjct: 60 DPTKICTGKGAVTLRASSSYRETPSSSPASPQETRQHESKPGLEPEPSSADEWRLSSSAD 119
Query: 428 ANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
ANGNAQPSSLAAKGYRSVHP+ PSDK Q
Sbjct: 120 ANGNAQPSSLAAKGYRSVHPNLPSDKSQ 147
>ref|NP_001030127.1| sorbin and SH3 domain-containing protein 1 isoform 4 [Homo
sapiens].
Length = 1151
Score = 150 bits (379), Expect = 2e-36
Identities = 88/148 (59%), Positives = 92/148 (62%), Gaps = 41/148 (27%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDK--------------------------------DT 274
MSSECD G SKAV+NGLA GSNG+DK D
Sbjct: 1 MSSECD-GGSKAVMNGLAPGSNGQDKATADPLRARSISAVKIIPVKTVKNASGLVLPTDM 59
Query: 275 DPTKICTGKGAVTLRASSSYREIPSGSPVSPREAPQQERK---------ADEWRLPSHAD 427
DPTKICTGKGAVTLRASSSYRE PS SP SP+E Q E K ADEWRL S AD
Sbjct: 60 DPTKICTGKGAVTLRASSSYRETPSSSPASPQETRQHESKPGLEPEPSSADEWRLSSSAD 119
Query: 428 ANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
ANGNAQPSSLAAKGYRSVHP+ PSDK Q
Sbjct: 120 ANGNAQPSSLAAKGYRSVHPNLPSDKSQ 147
>ref|NP_001030126.1| sorbin and SH3 domain-containing protein 1 isoform 3 [Homo
sapiens].
Length = 1292
Score = 150 bits (379), Expect = 2e-36
Identities = 88/148 (59%), Positives = 92/148 (62%), Gaps = 41/148 (27%)
Frame = +2
Query: 191 MSSECDVGASKAVVNGLALGSNGRDK--------------------------------DT 274
MSSECD G SKAV+NGLA GSNG+DK D
Sbjct: 1 MSSECD-GGSKAVMNGLAPGSNGQDKATADPLRARSISAVKIIPVKTVKNASGLVLPTDM 59
Query: 275 DPTKICTGKGAVTLRASSSYREIPSGSPVSPREAPQQERK---------ADEWRLPSHAD 427
DPTKICTGKGAVTLRASSSYRE PS SP SP+E Q E K ADEWRL S AD
Sbjct: 60 DPTKICTGKGAVTLRASSSYRETPSSSPASPQETRQHESKPGLEPEPSSADEWRLSSSAD 119
Query: 428 ANGNAQPSSLAAKGYRSVHPSFPSDKPQ 511
ANGNAQPSSLAAKGYRSVHP+ PSDK Q
Sbjct: 120 ANGNAQPSSLAAKGYRSVHPNLPSDKSQ 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,879,881
Number of extensions: 1184458
Number of successful extensions: 5453
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5433
Number of HSP's successfully gapped: 7
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008193
(1129 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 946 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 946 bits (477), Expect = 0.0
Identities = 477/477 (100%)
Strand = Plus / Minus
Query: 395 gcagatgagtggaggcttccttcccatgctgatgccaatggaaatgcccaaccctcttca 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116633511 gcagatgagtggaggcttccttcccatgctgatgccaatggaaatgcccaaccctcttca 116633452
Query: 455 ctggctgccaagggctacagaagcgtgcaccccagctttccttctgacaagccccaggta 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116633451 ctggctgccaagggctacagaagcgtgcaccccagctttccttctgacaagccccaggta 116633392
Query: 515 ggcctgtgtgcaaggctggggagggggtggggactgttctggagtctcttagctggcact 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116633391 ggcctgtgtgcaaggctggggagggggtggggactgttctggagtctcttagctggcact 116633332
Query: 575 tggggcttcctgttcgcccggctggagagctgggcccggttctgagttgcacttttggcc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116633331 tggggcttcctgttcgcccggctggagagctgggcccggttctgagttgcacttttggcc 116633272
Query: 635 agctctggaaaagctccaggagcaccagaatgagggagaaggtggggtcaggggaagcgg 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116633271 agctctggaaaagctccaggagcaccagaatgagggagaaggtggggtcaggggaagcgg 116633212
Query: 695 aggcatgggatgagactcttctgtaccagggtttcagaaatacaagccccgtatttccta 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116633211 aggcatgggatgagactcttctgtaccagggtttcagaaatacaagccccgtatttccta 116633152
Query: 755 ggtttgaaacgcatgtggaaatgtcctgaaagagggaatggcaggttggaaaaaagtctg 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116633151 ggtttgaaacgcatgtggaaatgtcctgaaagagggaatggcaggttggaaaaaagtctg 116633092
Query: 815 agcctgtttgataaagactccttagcgtataatattcaaaagaagagggtgctggca 871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116633091 agcctgtttgataaagactccttagcgtataatattcaaaagaagagggtgctggca 116633035
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 268 agacacggatcctacaaaaatctgcaccgggaagggagccgtgactctccgggcctcgtc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116642849 agacacggatcctacaaaaatctgcaccgggaagggagccgtgactctccgggcctcgtc 116642790
Query: 328 ctcttaccgggaaatcccgagcggcagccccgtgagcccccgtgaagccccgcagcagga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116642789 ctcttaccgggaaatcccgagcggcagccccgtgagcccccgtgaagccccgcagcagga 116642730
Query: 388 gagaaaagcag 398
|||||||||||
Sbjct: 116642729 gagaaaagcag 116642719
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 58 aggagtggcattcgtcggaagagtttgtgaaaccttctctgcccggagctccaggaccaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116703514 aggagtggcattcgtcggaagagtttgtgaaaccttctctgcccggagctccaggaccaa 116703455
Query: 118 tgcatctttccaccaccttgaaccactg 145
||||||||||||||||||||||||||||
Sbjct: 116703454 tgcatctttccaccaccttgaaccactg 116703427
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 200 gaatgcgatgtgggtgcttccaaggccgtggtgaatggactggcactgggcagcaacggg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116647718 gaatgcgatgtgggtgcttccaaggccgtggtgaatggactggcactgggcagcaacggg 116647659
Query: 260 cgagacaaag 269
||||||||||
Sbjct: 116647658 cgagacaaag 116647649
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 1 gtgtagtgcgagtggggcaggacgcgcgcagccagcccgcccgcccggagacccgcaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116771065 gtgtagtgcgagtggggcaggacgcgcgcagccagcccgcccgcccggagacccgcaagg 116771006
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 145 gagcagtgcagagccccagtttcagaagacttgtcctgccgccaccatgagctctg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116652776 gagcagtgcagagccccagtttcagaagacttgtcctgccgccaccatgagctctg 116652721
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,192,504
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 6
Length of query: 1129
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1108
Effective length of database: 2,808,413,156
Effective search space: 3111721776848
Effective search space used: 3111721776848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)