Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008198
(1172 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_963285.2| superoxide dismutase [Mn], mitochondrial precur... 405 e-113
>ref|NP_963285.2| superoxide dismutase [Mn], mitochondrial precursor [Bos taurus].
Length = 222
Score = 405 bits (1040), Expect = e-113
Identities = 194/222 (87%), Positives = 201/222 (90%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
ML RAACS+SR LVPAL VLGSRQKH+LPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAACSTSRRLVPALSVLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 676
NLNV EEKY+EAL+KGDVTAQ+ALQPALKFNGGGHINHSIFWTNLSPNGGGEP+GELLEA
Sbjct: 61 NLNVAEEKYREALEKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPQGELLEA 120
Query: 677 IKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPLL 856
IKRDFGSF KFKEKLTA FNKEQGRLQIAACSNQDPLQGTTGL+PLL
Sbjct: 121 IKRDFGSFAKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLL 180
Query: 857 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVT RYTAC K
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTARYTACSK 222
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,835,875
Number of extensions: 1159156
Number of successful extensions: 5317
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5294
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008198
(1172 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533463.2| PREDICTED: similar to Superoxide dismutase [Mn]... 389 e-108
Alignment gi|XP_862586.1| PREDICTED: similar to Superoxide dismutase [Mn]... 382 e-106
Alignment gi|XP_862558.1| PREDICTED: similar to manganese superoxide dism... 299 4e-81
>ref|XP_533463.2| PREDICTED: similar to Superoxide dismutase [Mn], mitochondrial
precursor isoform 1 [Canis familiaris].
Length = 223
Score = 389 bits (1000), Expect = e-108
Identities = 188/223 (84%), Positives = 196/223 (87%), Gaps = 1/223 (0%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
ML RAA S+SR LVPALG LGSRQKH+LPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAALSTSRTLVPALGCLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKG-DVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLE 673
NLN +EEKY EAL+K D+TAQ+ALQP LKFNGGGHINHSIFWTNLSP GGGEPKGELLE
Sbjct: 61 NLNTIEEKYLEALEKASDITAQIALQPGLKFNGGGHINHSIFWTNLSPKGGGEPKGELLE 120
Query: 674 AIKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPL 853
AIKRDFGSF+KFKEKLT FNKEQGRLQIAAC NQDPLQGTTGL+PL
Sbjct: 121 AIKRDFGSFDKFKEKLTTVSVGVQGSGWGWLGFNKEQGRLQIAACFNQDPLQGTTGLIPL 180
Query: 854 LGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
LGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY ACKK
Sbjct: 181 LGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 223
>ref|XP_862586.1| PREDICTED: similar to Superoxide dismutase [Mn], mitochondrial
precursor isoform 4 [Canis familiaris].
Length = 220
Score = 382 bits (980), Expect = e-106
Identities = 185/222 (83%), Positives = 192/222 (86%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
ML RAA S+SR LVPALG LGSRQKH+LPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAALSTSRTLVPALGCLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 676
NLN +EEKY E D+TAQ+ALQP LKFNGGGHINHSIFWTNLSP GGGEPKGELLEA
Sbjct: 61 NLNTIEEKYLEP--DCDITAQIALQPGLKFNGGGHINHSIFWTNLSPKGGGEPKGELLEA 118
Query: 677 IKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPLL 856
IKRDFGSF+KFKEKLT FNKEQGRLQIAAC NQDPLQGTTGL+PLL
Sbjct: 119 IKRDFGSFDKFKEKLTTVSVGVQGSGWGWLGFNKEQGRLQIAACFNQDPLQGTTGLIPLL 178
Query: 857 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY ACKK
Sbjct: 179 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 220
>ref|XP_862558.1| PREDICTED: similar to manganese superoxide dismutase isoform B
precursor isoform 3 [Canis familiaris].
Length = 183
Score = 299 bits (765), Expect = 4e-81
Identities = 154/222 (69%), Positives = 160/222 (72%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
ML RAA S+SR LVPALG LGSRQKH+LPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAALSTSRTLVPALGCLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 676
NLN +EEKY EAL+KG ELLEA
Sbjct: 61 NLNTIEEKYLEALEKG---------------------------------------ELLEA 81
Query: 677 IKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPLL 856
IKRDFGSF+KFKEKLT FNKEQGRLQIAAC NQDPLQGTTGL+PLL
Sbjct: 82 IKRDFGSFDKFKEKLTTVSVGVQGSGWGWLGFNKEQGRLQIAACFNQDPLQGTTGLIPLL 141
Query: 857 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY ACKK
Sbjct: 142 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 183
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,654,943
Number of extensions: 1196383
Number of successful extensions: 5625
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5590
Number of HSP's successfully gapped: 4
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008198
(1172 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999292.2| superoxide dismutase [Mn], mitochondrial [Sus s... 427 e-120
>ref|NP_999292.2| superoxide dismutase [Mn], mitochondrial [Sus scrofa].
Length = 222
Score = 427 bits (1099), Expect = e-120
Identities = 207/222 (93%), Positives = 207/222 (93%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 676
NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
Sbjct: 61 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
Query: 677 IKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPLL 856
IKRDFGSFEKFKEKLTA FNKEQGRLQIAACSNQDPLQGTTGLVPLL
Sbjct: 121 IKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLVPLL 180
Query: 857 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY ACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYAACKK 222
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,632,061
Number of extensions: 748957
Number of successful extensions: 3422
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3409
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008198
(1172 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038699.2| superoxide dismutase [Mn], mitochondrial precur... 399 e-111
>ref|NP_038699.2| superoxide dismutase [Mn], mitochondrial precursor [Mus musculus].
Length = 222
Score = 399 bits (1024), Expect = e-111
Identities = 190/222 (85%), Positives = 194/222 (87%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
MLCRAACS+ R L P G GSR KH+LPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLCRAACSTGRRLGPVAGAAGSRHKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 676
NLN EEKY EAL KGDVT QVALQPALKFNGGGHINH+IFWTNLSP GGGEPKGELLEA
Sbjct: 61 NLNATEEKYHEALAKGDVTTQVALQPALKFNGGGHINHTIFWTNLSPKGGGEPKGELLEA 120
Query: 677 IKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPLL 856
IKRDFGSFEKFKEKLTA FNKEQGRLQIAACSNQDPLQGTTGL+PLL
Sbjct: 121 IKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLL 180
Query: 857 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 222
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,909,949
Number of extensions: 963724
Number of successful extensions: 3902
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3884
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008198
(1172 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019636.1| superoxide dismutase [Mn], mitochondrial iso... 399 e-111
Alignment gi|NP_000627.2| superoxide dismutase [Mn], mitochondrial isofor... 399 e-111
Alignment gi|NP_001019637.1| superoxide dismutase [Mn], mitochondrial iso... 297 1e-80
>ref|NP_001019636.1| superoxide dismutase [Mn], mitochondrial isoform A precursor [Homo
sapiens].
Length = 222
Score = 399 bits (1025), Expect = e-111
Identities = 190/222 (85%), Positives = 196/222 (88%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
ML RA C +SR L P LG LGSRQKH+LPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 676
NLNV EEKYQEAL KGDVTAQ+ALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
Sbjct: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
Query: 677 IKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPLL 856
IKRDFGSF+KFKEKLTA FNKE+G LQIAAC NQDPLQGTTGL+PLL
Sbjct: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
Query: 857 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY ACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
>ref|NP_000627.2| superoxide dismutase [Mn], mitochondrial isoform A precursor [Homo
sapiens].
Length = 222
Score = 399 bits (1025), Expect = e-111
Identities = 190/222 (85%), Positives = 196/222 (88%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
ML RA C +SR L P LG LGSRQKH+LPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 676
NLNV EEKYQEAL KGDVTAQ+ALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
Sbjct: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
Query: 677 IKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPLL 856
IKRDFGSF+KFKEKLTA FNKE+G LQIAAC NQDPLQGTTGL+PLL
Sbjct: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
Query: 857 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY ACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
>ref|NP_001019637.1| superoxide dismutase [Mn], mitochondrial isoform B precursor [Homo
sapiens].
Length = 183
Score = 297 bits (761), Expect = 1e-80
Identities = 152/222 (68%), Positives = 157/222 (70%)
Frame = +2
Query: 317 MLCRAACSSSRNLVPALGVLGSRQKHTLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 496
ML RA C +SR L P LG LGSRQKH+LPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 497 NLNVVEEKYQEALKKGDVTAQVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 676
NLNV EEKYQEAL KG ELLEA
Sbjct: 61 NLNVTEEKYQEALAKG---------------------------------------ELLEA 81
Query: 677 IKRDFGSFEKFKEKLTAXXXXXXXXXXXXXXFNKEQGRLQIAACSNQDPLQGTTGLVPLL 856
IKRDFGSF+KFKEKLTA FNKE+G LQIAAC NQDPLQGTTGL+PLL
Sbjct: 82 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 141
Query: 857 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYTACKK 982
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY ACKK
Sbjct: 142 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 183
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,715,424
Number of extensions: 1161370
Number of successful extensions: 4841
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4823
Number of HSP's successfully gapped: 4
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008198
(1172 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 672 0.0
Sscrofa_Chr04 72 8e-10
>Sscrofa_Chr01
|| Length = 315321322
Score = 672 bits (339), Expect = 0.0
Identities = 339/339 (100%)
Strand = Plus / Plus
Query: 834 caacaggtctggttccgctgctggggatcgacgtgtgggagcatgcgtattaccttcagt 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484691 caacaggtctggttccgctgctggggatcgacgtgtgggagcatgcgtattaccttcagt 9484750
Query: 894 ataaaaacgtcagacctgattacctgaaagctatttggaatgtaatcaactgggagaatg 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484751 ataaaaacgtcagacctgattacctgaaagctatttggaatgtaatcaactgggagaatg 9484810
Query: 954 taactgagcgatacaccgcttgcaaaaagtaaaacagcagcctcacaccgagtacatcaa 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484811 taactgagcgatacaccgcttgcaaaaagtaaaacagcagcctcacaccgagtacatcaa 9484870
Query: 1014 gctctttggggctgtttttgtaggagcgccgaataccgcagggtaccaataagctgctct 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484871 gctctttggggctgtttttgtaggagcgccgaataccgcagggtaccaataagctgctct 9484930
Query: 1074 attgtagtgtttctgaatgcggcttgttcaggtatttgataaacacaatgtagtgccatg 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9484931 attgtagtgtttctgaatgcggcttgttcaggtatttgataaacacaatgtagtgccatg 9484990
Query: 1134 aagaatttcttttaaaatttgattattaggcaactgttt 1172
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9484991 aagaatttcttttaaaatttgattattaggcaactgttt 9485029
Score = 404 bits (204), Expect = e-110
Identities = 207/208 (99%)
Strand = Plus / Plus
Query: 337 cagctcgagcaggaatctggtgccggctttgggggtcctgggttcccggcagaagcacac 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9476003 cagctcgagcaggaatctggtgccggctttgggggtcctgggttcccggcagaagcacac 9476062
Query: 397 cctccccgacctgccgtacgactatggcgccctggagccgcacatcaacgcccagatcat 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9476063 cctccccgacctgccgtacgactatggcgccctggagccgcacatcaacgcccagatcat 9476122
Query: 457 gcagctgcaccacagcaagcaccacgcggcctacgtgaacaacctgaacgtcgtggagga 516
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9476123 gcaactgcaccacagcaagcaccacgcggcctacgtgaacaacctgaacgtcgtggagga 9476182
Query: 517 gaagtaccaggaggcgctgaaaaagggt 544
||||||||||||||||||||||||||||
Sbjct: 9476183 gaagtaccaggaggcgctgaaaaagggt 9476210
Score = 353 bits (178), Expect = 1e-94
Identities = 187/190 (98%)
Strand = Plus / Plus
Query: 658 aggggaattgctggaagccatcaaacgcgactttggttccttcgaaaaattcaaggagaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9482722 aggggaattgctggaagccatcaaacgcgactttggttccttcgaaaaattcaaggagaa 9482781
Query: 718 gttgaccgctgtatccgtcggcgtccaaggctcaggctggggttggctcggtttcaacaa 777
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9482782 gttgaccgctgtatctgtcggcgtccaaggctcaggctggggttggctcggtttcaacaa 9482841
Query: 778 ggaacagggccgcttgcagattgccgcttgttctaaccaggatcccctgcaaggaacaac 837
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9482842 ggagcagggccgcttgcagattgccgcttgttctaaccaggatcccctgcaaggaacaac 9482901
Query: 838 aggtctggtt 847
||||| ||||
Sbjct: 9482902 aggtcaggtt 9482911
Score = 254 bits (128), Expect = 9e-65
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 7 acacgctcggaagcccggcnagaaggggcaccacgttcgcgcggcagctggaaaaagtgc 66
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9475317 acacgctcggaagcccggcaagaaggggcaccacgttcgcgcggcagctggaaaaagtgc 9475376
Query: 67 aggtgccccagttcttgcgtcccctgagcccagaacgcgggtgcggcgcggtcgggcaga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9475377 aggtgccccagttcttgcgtcccctgagcccagaacgcgggtgcggcgcggtcgggcaga 9475436
Query: 127 gcccggggctt 137
|||||||||||
Sbjct: 9475437 gcccggggctt 9475447
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 542 ggtgatgttacagctcaggtagctctgcagcctgcattgaagttcaacggtggaggccac 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9480033 ggtgatgttacagctcaggtagctctgcagcctgcattgaagttcaacggtggaggccac 9480092
Query: 602 atcaatcatagcattttctggacaaatctgagccctaacggtggcggggaacccaaagg 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9480093 atcaatcatagcattttctggacaaatctgagccctaacggtggcggggaacccaaagg 9480151
Score = 228 bits (115), Expect = 5e-57
Identities = 118/119 (99%)
Strand = Plus / Plus
Query: 221 tatgtccttgtagcgcggctcgggacacgagttcagccggtcggtccgagcagcctggcg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9475533 tatgtccttgtagcgcggctcgggacacgagttcagccggtcggtccgagcagcccggcg 9475592
Query: 281 gctggaattctgagggtccagcgggcggcgatcaccatgttgtgcagggcggcgtgcag 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9475593 gctggaattctgagggtccagcgggcggcgatcaccatgttgtgcagggcggcgtgcag 9475651
>Sscrofa_Chr04
|| Length = 143465943
Score = 71.9 bits (36), Expect = 8e-10
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 902 gtcagacctgattacctgaaagctatttggaatgtaatcaactgggagaatgtaactgag 961
|||||| | ||||| || |||||| |||||||||||||||||||||||| |||||||||
Sbjct: 127106795 gtcagatccgattatctaaaagctgtttggaatgtaatcaactgggagattgtaactgaa 127106736
Query: 962 cgatacaccgcttgcaaaaa 981
|||||| | |||||||||
Sbjct: 127106735 agatacatggtttgcaaaaa 127106716
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,875,996
Number of extensions: 166
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 7
Length of query: 1172
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1151
Effective length of database: 2,808,413,156
Effective search space: 3232483542556
Effective search space used: 3232483542556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)