Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008205
(954 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029531.1| tryptophan-rich protein [Bos taurus]. 338 3e-93
>ref|NP_001029531.1| tryptophan-rich protein [Bos taurus].
Length = 174
Score = 338 bits (868), Expect = 3e-93
Identities = 171/174 (98%), Positives = 171/174 (98%)
Frame = +3
Query: 78 MSAAEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 257
MSAAEADRWAWLLVLSFVFGCNVLRILLPSFS FMSRVLQKDAEQESQMRAEIQ MKQEL
Sbjct: 1 MSAAEADRWAWLLVLSFVFGCNVLRILLPSFSFFMSRVLQKDAEQESQMRAEIQGMKQEL 60
Query: 258 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI 437
STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI
Sbjct: 61 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI 120
Query: 438 WKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 599
WKYYSVPVAVVP KWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS
Sbjct: 121 WKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 174
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,242,106
Number of extensions: 801750
Number of successful extensions: 2679
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2672
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008205
(954 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849833.1| PREDICTED: similar to Tryptophan-rich protein (... 340 2e-93
Alignment gi|XP_859827.1| PREDICTED: similar to Tryptophan-rich protein (... 273 1e-73
>ref|XP_849833.1| PREDICTED: similar to Tryptophan-rich protein (Congenital heart
disease 5 protein) isoform 1 [Canis familiaris].
Length = 174
Score = 340 bits (871), Expect = 2e-93
Identities = 170/174 (97%), Positives = 172/174 (98%)
Frame = +3
Query: 78 MSAAEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 257
MS AEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSR+LQKDAEQE+QMRAEIQDMKQEL
Sbjct: 1 MSGAEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSRLLQKDAEQEAQMRAEIQDMKQEL 60
Query: 258 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI 437
STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI
Sbjct: 61 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI 120
Query: 438 WKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 599
WKYYSVPVAVVP KWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS
Sbjct: 121 WKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 174
>ref|XP_859827.1| PREDICTED: similar to Tryptophan-rich protein (Congenital heart
disease 5 protein) isoform 2 [Canis familiaris].
Length = 140
Score = 273 bits (699), Expect = 1e-73
Identities = 137/140 (97%), Positives = 139/140 (99%)
Frame = +3
Query: 180 MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 359
MSR+LQKDAEQE+QMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART
Sbjct: 1 MSRLLQKDAEQEAQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 60
Query: 360 AQLAKIKWVISVAFYILQAALMVSLIWKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVG 539
AQLAKIKWVISVAFYILQAALMVSLIWKYYSVPVAVVP KWITPLDRLVAFPTRVAGGVG
Sbjct: 61 AQLAKIKWVISVAFYILQAALMVSLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG 120
Query: 540 ITCWILVCNKVVAIVLHPFS 599
ITCWILVCNKVVAIVLHPFS
Sbjct: 121 ITCWILVCNKVVAIVLHPFS 140
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,515,498
Number of extensions: 812119
Number of successful extensions: 2749
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2749
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008205
(954 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359009.1| PREDICTED: tryptophan-rich protein-like [Sus... 346 1e-95
Alignment gi|XP_003359015.1| PREDICTED: tryptophan-rich protein-like, par... 244 7e-65
>ref|XP_003359009.1| PREDICTED: tryptophan-rich protein-like [Sus scrofa].
Length = 174
Score = 346 bits (887), Expect = 1e-95
Identities = 174/174 (100%), Positives = 174/174 (100%)
Frame = +3
Query: 78 MSAAEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 257
MSAAEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL
Sbjct: 1 MSAAEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 60
Query: 258 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI 437
STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI
Sbjct: 61 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI 120
Query: 438 WKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 599
WKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS
Sbjct: 121 WKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 174
>ref|XP_003359015.1| PREDICTED: tryptophan-rich protein-like, partial [Sus scrofa].
Length = 121
Score = 244 bits (622), Expect = 7e-65
Identities = 121/121 (100%), Positives = 121/121 (100%)
Frame = +3
Query: 237 QDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQA 416
QDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQA
Sbjct: 1 QDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQA 60
Query: 417 ALMVSLIWKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPF 596
ALMVSLIWKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPF
Sbjct: 61 ALMVSLIWKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPF 120
Query: 597 S 599
S
Sbjct: 121 S 121
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,364,846
Number of extensions: 509391
Number of successful extensions: 1712
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1709
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008205
(954 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_997184.1| tryptophan-rich protein [Mus musculus]. 330 8e-91
>ref|NP_997184.1| tryptophan-rich protein [Mus musculus].
Length = 174
Score = 330 bits (847), Expect = 8e-91
Identities = 164/174 (94%), Positives = 169/174 (97%)
Frame = +3
Query: 78 MSAAEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 257
MSA+E DRWAWLLVLSFVFGCN+LRILLPS SSF+SRVLQKDAEQESQMRAEIQ MKQEL
Sbjct: 1 MSASETDRWAWLLVLSFVFGCNLLRILLPSLSSFISRVLQKDAEQESQMRAEIQGMKQEL 60
Query: 258 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI 437
STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKW ISVAFYILQAALM+SLI
Sbjct: 61 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWFISVAFYILQAALMISLI 120
Query: 438 WKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 599
WKYYSVPVAVVP KWITPLDRLVAFPTRVAGG+GITCWILVCNKVVAIVLHPFS
Sbjct: 121 WKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGIGITCWILVCNKVVAIVLHPFS 174
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,016,052
Number of extensions: 686785
Number of successful extensions: 2219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2211
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008205
(954 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004618.2| tryptophan-rich protein isoform 1 [Homo sapiens]. 337 7e-93
Alignment gi|NP_001139690.1| tryptophan-rich protein isoform 2 [Homo sapi... 275 4e-74
>ref|NP_004618.2| tryptophan-rich protein isoform 1 [Homo sapiens].
Length = 174
Score = 337 bits (865), Expect = 7e-93
Identities = 168/174 (96%), Positives = 171/174 (98%)
Frame = +3
Query: 78 MSAAEADRWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 257
MS+A AD WAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL
Sbjct: 1 MSSAAADHWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 60
Query: 258 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYILQAALMVSLI 437
STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFY+LQAALM+SLI
Sbjct: 61 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALMISLI 120
Query: 438 WKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 599
WKYYSVPVAVVP KWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS
Sbjct: 121 WKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 174
>ref|NP_001139690.1| tryptophan-rich protein isoform 2 [Homo sapiens].
Length = 140
Score = 275 bits (703), Expect = 4e-74
Identities = 137/140 (97%), Positives = 139/140 (99%)
Frame = +3
Query: 180 MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 359
MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART
Sbjct: 1 MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 60
Query: 360 AQLAKIKWVISVAFYILQAALMVSLIWKYYSVPVAVVPRKWITPLDRLVAFPTRVAGGVG 539
AQLAKIKWVISVAFY+LQAALM+SLIWKYYSVPVAVVP KWITPLDRLVAFPTRVAGGVG
Sbjct: 61 AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG 120
Query: 540 ITCWILVCNKVVAIVLHPFS 599
ITCWILVCNKVVAIVLHPFS
Sbjct: 121 ITCWILVCNKVVAIVLHPFS 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,006,637
Number of extensions: 808142
Number of successful extensions: 2694
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2688
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008205
(954 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 773 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 773 bits (390), Expect = 0.0
Identities = 418/429 (97%), Gaps = 1/429 (0%)
Strand = Plus / Plus
Query: 527 aggtggtgttggaattacctgttggattttagtctgtaacaaagttgtggccattgtgct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213141331 aggtggtgttggaattacctgttggattttagtctgtaacaaagttgtggccattgtgct 213141390
Query: 587 tcaccctttcagctgaaggaagatgaatgcagctacagcactttaaaaaaggaattgtca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213141391 tcaccctttcagctgaaggaagatgaatgcagctacagcactttaaaaaaggaattgtca 213141450
Query: 647 cgtaggaggttgaaaatgtgatttatgctgttttatggtttattgtgtgtgnnnnnnnnn 706
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213141451 cgtaggaggttgaaaatgtgatttatgctgttttatggtttattgtgtgtgttttttttt 213141510
Query: 707 aaagaaacacaggccacaggttagtttttattgttgaatgtgtttatttttggactttat 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213141511 aaagaaacacaggccacaggttagtttttattgttgaatgtgtttatttttggactttat 213141570
Query: 767 gtggagattcttacaagaggcacaattttatacaatttgtcatgagccataaaggtcagt 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213141571 gtggagattcttacaagaggcacaattttatacaatttgtcatgagccataaaggtcagt 213141630
Query: 827 ctcacacctacgtcccggccagcatggcaccagattcgtaataagaactgtgtgatgtta 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213141631 ctcacacctacgtcccggccagcatggcaccagattcgtaataagaactgtgtgatgtta 213141690
Query: 887 tgttgtgtccacgtgttggtacttgtgatttgcattcttgtcgta-tttaaaggtcgcgt 945
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 213141691 tgttgtgtccacgtgttgttacttgtgatttgcattcttgtcgtattttaaaggtcgcgt 213141750
Query: 946 tgccaaggg 954
|||||||||
Sbjct: 213141751 tgccaaggg 213141759
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 2 actgcgcaggcgcggcggtcggcgtggtccccatggagccggagtagcggggctggcgcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213126875 actgcgcaggcgcggcggtcggcgtggtccccatggagccggagtagcggggctggcgcc 213126934
Query: 62 gccgcgagctgcggacatgagcgcggcggaggccgaccgctgggcgtggctgctggtgct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213126935 gccgcgagctgcggacatgagcgcggcggaggccgaccgctgggcgtggctgctggtgct 213126994
Query: 122 cagcttcgtgtttgggtgcaatgtactcaggatcctcctcccgtccttctcctccttc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213126995 cagcttcgtgtttgggtgcaatgtactcaggatcctcctcccgtccttctcctccttc 213127052
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 180 atgtcccgggtgctgcagaaggatgcagagcaggagtcccagatgcgcgcagagatccag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213136578 atgtcccgggtgctgcagaaggatgcagagcaggagtcccagatgcgcgcagagatccag 213136637
Query: 240 gatatgaagcaggagctctccaccgtcaacatgatggacgagttcgccagatatgccagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213136638 gatatgaagcaggagctctccaccgtcaacatgatggacgagttcgccagatatgccagg 213136697
Query: 300 ctggagcgcaagatcaacaagatgacggataagctcaaaactcacg 345
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213136698 ctggagcgcaagatcaacaagatgacggataagctcaaaactcacg 213136743
Score = 238 bits (120), Expect = 5e-60
Identities = 123/124 (99%)
Strand = Plus / Plus
Query: 408 ttgcaagcggcgctgatggtctcgctcatctggaagtactactctgtgccggtggcggtg 467
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213139957 ttgcaggcggcgctgatggtctcgctcatctggaagtactactctgtgccggtggcggtg 213140016
Query: 468 gtgcccaggaagtggataacgccgctcgaccgcctggtggcatttccgactagagtagca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213140017 gtgcccaggaagtggataacgccgctcgaccgcctggtggcatttccgactagagtagca 213140076
Query: 528 ggtg 531
||||
Sbjct: 213140077 ggtg 213140080
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 345 gtgaaagcacggacagcgcagctggccaagataaagtgggtgataagtgtggctttctac 404
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Sbjct: 213138037 gtgaaagcacggacagcgcagctggccaagataaagtgggtgataagtgtggctttctac 213138096
Query: 405 attttgcaag 414
||||||||||
Sbjct: 213138097 attttgcaag 213138106
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,401,959
Number of extensions: 180
Number of successful extensions: 180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 6
Length of query: 954
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 933
Effective length of database: 2,808,413,156
Effective search space: 2620249474548
Effective search space used: 2620249474548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)