Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008220
(1239 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098962.1| protein RER1 [Bos taurus]. 395 e-110
>ref|NP_001098962.1| protein RER1 [Bos taurus].
Length = 196
Score = 395 bits (1014), Expect = e-110
Identities = 184/196 (93%), Positives = 192/196 (97%)
Frame = +1
Query: 172 MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYL 351
MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLD+STP+TAVRWVVTLGLSF+YM+RVYL
Sbjct: 1 MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYL 60
Query: 352 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 531
LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK
Sbjct: 61 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 120
Query: 532 FWHAATKGVLVAMVCTFFEAFNVPVFWPILVMYFVMLFCITMKRQIKHMIKYRYIPFTHG 711
FWHAATKG+LVAMVCTFFEAFNVPVFWPILVMYF+MLFCITMKRQIKHMIKYRYIPFTHG
Sbjct: 121 FWHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHG 180
Query: 712 KRTYRGKEDSAKTLTS 759
KRTY+GKED+ K S
Sbjct: 181 KRTYKGKEDAGKAFAS 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,615,759
Number of extensions: 1026755
Number of successful extensions: 4789
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4781
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 308
Effective length of database: 14,207,134
Effective search space: 4375797272
Effective search space used: 4375797272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008220
(1239 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851339.1| PREDICTED: similar to RER1 homolog [Canis famil... 288 1e-77
Alignment gi|XP_536717.2| PREDICTED: similar to RER1 homolog [Canis famil... 256 4e-68
>ref|XP_851339.1| PREDICTED: similar to RER1 homolog [Canis familiaris].
Length = 142
Score = 288 bits (736), Expect = 1e-77
Identities = 133/142 (93%), Positives = 137/142 (96%)
Frame = +1
Query: 334 MVRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIR 513
M+RVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIR
Sbjct: 1 MIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIR 60
Query: 514 RLPEFKFWHAATKGVLVAMVCTFFEAFNVPVFWPILVMYFVMLFCITMKRQIKHMIKYRY 693
RLPEFKFWHAATKG+LVAM CTFFEAFNVPVFWPILVMYF+MLFCITMKRQIKHMIKYRY
Sbjct: 61 RLPEFKFWHAATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRY 120
Query: 694 IPFTHGKRTYRGKEDSAKTLTS 759
IPFTHGKRTY+GKED KT S
Sbjct: 121 IPFTHGKRTYKGKEDGGKTFAS 142
>ref|XP_536717.2| PREDICTED: similar to RER1 homolog [Canis familiaris].
Length = 138
Score = 256 bits (653), Expect = 4e-68
Identities = 121/128 (94%), Positives = 124/128 (96%)
Frame = +1
Query: 172 MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYL 351
MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLD+STPYTAVRWVVTLGLSFVYM+RVYL
Sbjct: 1 MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYL 60
Query: 352 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 531
LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK
Sbjct: 61 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 120
Query: 532 FWHAATKG 555
FW +G
Sbjct: 121 FWARGDQG 128
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,202,079
Number of extensions: 1019198
Number of successful extensions: 5178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5170
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 308
Effective length of database: 15,374,224
Effective search space: 4735260992
Effective search space used: 4735260992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008220
(1239 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356174.1| PREDICTED: protein RER1-like [Sus scrofa]. 409 e-114
>ref|XP_003356174.1| PREDICTED: protein RER1-like [Sus scrofa].
Length = 196
Score = 409 bits (1050), Expect = e-114
Identities = 196/196 (100%), Positives = 196/196 (100%)
Frame = +1
Query: 172 MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYL 351
MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYL
Sbjct: 1 MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYL 60
Query: 352 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 531
LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK
Sbjct: 61 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 120
Query: 532 FWHAATKGVLVAMVCTFFEAFNVPVFWPILVMYFVMLFCITMKRQIKHMIKYRYIPFTHG 711
FWHAATKGVLVAMVCTFFEAFNVPVFWPILVMYFVMLFCITMKRQIKHMIKYRYIPFTHG
Sbjct: 121 FWHAATKGVLVAMVCTFFEAFNVPVFWPILVMYFVMLFCITMKRQIKHMIKYRYIPFTHG 180
Query: 712 KRTYRGKEDSAKTLTS 759
KRTYRGKEDSAKTLTS
Sbjct: 181 KRTYRGKEDSAKTLTS 196
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,339,724
Number of extensions: 727218
Number of successful extensions: 3138
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3132
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 312
Effective length of database: 8,829,335
Effective search space: 2754752520
Effective search space used: 2754752520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008220
(1239 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080671.1| protein RER1 [Mus musculus]. 394 e-109
>ref|NP_080671.1| protein RER1 [Mus musculus].
Length = 196
Score = 394 bits (1011), Expect = e-109
Identities = 184/196 (93%), Positives = 191/196 (97%)
Frame = +1
Query: 172 MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYL 351
MSEGDSVGDSVHGKPSVVYRFF+RLGQIYQSWLD+STPYTAVRWVVTLGLSFVYM+RVYL
Sbjct: 1 MSEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYL 60
Query: 352 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 531
LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK
Sbjct: 61 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 120
Query: 532 FWHAATKGVLVAMVCTFFEAFNVPVFWPILVMYFVMLFCITMKRQIKHMIKYRYIPFTHG 711
FWHAATKG+LVAM+CTFFEAFNVPVFWPILVMYF+MLFCITMKRQIKHMIKYRYIPFTHG
Sbjct: 121 FWHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHG 180
Query: 712 KRTYRGKEDSAKTLTS 759
KR Y+GKED KT S
Sbjct: 181 KRRYKGKEDVGKTFAS 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,024,990
Number of extensions: 818627
Number of successful extensions: 4006
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3984
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 309
Effective length of database: 12,493,815
Effective search space: 3860588835
Effective search space used: 3860588835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008220
(1239 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008964.3| protein RER1 [Homo sapiens]. 393 e-109
>ref|NP_008964.3| protein RER1 [Homo sapiens].
Length = 196
Score = 393 bits (1010), Expect = e-109
Identities = 184/196 (93%), Positives = 191/196 (97%)
Frame = +1
Query: 172 MSEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDRSTPYTAVRWVVTLGLSFVYMVRVYL 351
MSEGDSVG+SVHGKPSVVYRFFTRLGQIYQSWLD+STPYTAVRWVVTLGLSFVYM+RVYL
Sbjct: 1 MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYL 60
Query: 352 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 531
LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK
Sbjct: 61 LQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFK 120
Query: 532 FWHAATKGVLVAMVCTFFEAFNVPVFWPILVMYFVMLFCITMKRQIKHMIKYRYIPFTHG 711
FWHAATKG+LVAMVCTFF+AFNVPVFWPILVMYF+MLFCITMKRQIKHMIKYRYIPFTHG
Sbjct: 121 FWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHG 180
Query: 712 KRTYRGKEDSAKTLTS 759
KR YRGKED+ K S
Sbjct: 181 KRRYRGKEDAGKAFAS 196
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,163,832
Number of extensions: 980923
Number of successful extensions: 4723
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4715
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 308
Effective length of database: 14,835,944
Effective search space: 4569470752
Effective search space used: 4569470752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008220
(1239 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 468 e-129
>Sscrofa_Chr06
|| Length = 157765593
Score = 468 bits (236), Expect = e-129
Identities = 236/236 (100%)
Strand = Plus / Minus
Query: 671 agcacatgatcaagtaccggtacatcccgttcacgcacggcaagaggacgtacaggggca 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58933352 agcacatgatcaagtaccggtacatcccgttcacgcacggcaagaggacgtacaggggca 58933293
Query: 731 aggaggactcggccaagacgctcaccagctagaccgccccgctgcgccgcctgcgcgtac 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58933292 aggaggactcggccaagacgctcaccagctagaccgccccgctgcgccgcctgcgcgtac 58933233
Query: 791 agtagttgatcacgggagttgttttctttttaaaaaggagcttcaattatttgtaactga 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58933232 agtagttgatcacgggagttgttttctttttaaaaaggagcttcaattatttgtaactga 58933173
Query: 851 aatatcaggttcttgaagaaactggcatttaaactgaatcgcattgatttattttt 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58933172 aatatcaggttcttgaagaaactggcatttaaactgaatcgcattgatttattttt 58933117
Score = 460 bits (232), Expect = e-127
Identities = 235/236 (99%)
Strand = Plus / Minus
Query: 671 agcacatgatcaagtaccggtacatcccgttcacgcacggcaagaggacgtacaggggca 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58711395 agcacatgatcaagtaccggtacatcccgttcacgcacggcaagaggacgtacaggggca 58711336
Query: 731 aggaggactcggccaagacgctcaccagctagaccgccccgctgcgccgcctgcgcgtac 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58711335 aggaggactcggccaagacgctcaccagctagaccgccccgctgcgccgcctgcgcgtac 58711276
Query: 791 agtagttgatcacgggagttgttttctttttaaaaaggagcttcaattatttgtaactga 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58711275 agtagttgatcacgggagttgttttctttttaaaaaggagcttcaattatttgtaactga 58711216
Query: 851 aatatcaggttcttgaagaaactggcatttaaactgaatcgcattgatttattttt 906
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58711215 aataccaggttcttgaagaaactggcatttaaactgaatcgcattgatttattttt 58711160
Score = 410 bits (207), Expect = e-112
Identities = 210/211 (99%)
Strand = Plus / Minus
Query: 967 ccctgatgcccagcgccagggacgccacccgtgaccccatcgcccgcctggaggaagctc 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58933056 ccctgatgcccagcgccagggacgccacccgtgaccccatcgcccgcctggaggaagctc 58932997
Query: 1027 accggttcctgcgtgtgaaggagacccggggggaccccgggctcgagtgccagtctccca 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58932996 accggttcctgcgtgtgaaggagacccggggggaccccgggctcgagtgccagtctccca 58932937
Query: 1087 gtttcatctcagtagagatgtgtcgggtcggcctcttatcctgatgactcaaaactgtgt 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58932936 gtttcatctcagtagagatgtgtcgggtcggcctcttatcctgatgactcaaaactgtgt 58932877
Query: 1147 tctttactgccgtgattgcttttgagggcct 1177
|||| ||||||||||||||||||||||||||
Sbjct: 58932876 tcttaactgccgtgattgcttttgagggcct 58932846
Score = 394 bits (199), Expect = e-107
Identities = 208/211 (98%)
Strand = Plus / Minus
Query: 967 ccctgatgcccagcgccagggacgccacccgtgaccccatcgcccgcctggaggaagctc 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58711099 ccctgatgcccagcgccagggacgccacccgtgaccccatcgcccgcctggaggaagctc 58711040
Query: 1027 accggttcctgcgtgtgaaggagacccggggggaccccgggctcgagtgccagtctccca 1086
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 58711039 accggttcctgcgcgtgaaggagacccggggggaccctgggctcgagtgccagtctccca 58710980
Query: 1087 gtttcatctcagtagagatgtgtcgggtcggcctcttatcctgatgactcaaaactgtgt 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58710979 gtttcatctcagtagagatgtgtcgggtcggcctcttatcctgatgactcaaaactgtgt 58710920
Query: 1147 tctttactgccgtgattgcttttgagggcct 1177
|||| ||||||||||||||||||||||||||
Sbjct: 58710919 tcttaactgccgtgattgcttttgagggcct 58710889
Score = 337 bits (170), Expect = 9e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 1 gccccgccccggcagccatcttggagggccgggaggcggcgccgcacaggacggagcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58721044 gccccgccccggcagccatcttggagggccgggaggcggcgccgcacaggacggagcgga 58720985
Query: 61 agtgctcggctgctcgttctaggaccgagagaagcgccggcgcggccgccacccgcgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58720984 agtgctcggctgctcgttctaggaccgagagaagcgccggcgcggccgccacccgcgtcc 58720925
Query: 121 tccttcccgcggccctcgggagaccgcgctcggccgcagcggaccgcgag 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58720924 tccttcccgcggccctcgggagaccgcgctcggccgcagcggaccgcgag 58720875
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 536 ggcacgcagcgaccaagggcgtcctcgtggccatggtctgcaccttcttcgaggccttca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58711749 ggcacgcagcgaccaagggcgtcctcgtggccatggtctgcaccttcttcgaggccttca 58711690
Query: 596 acgtcccggtgttctggcccatcctggtcatgtacttcgtcatgctcttctgcatcacca 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58711689 acgtcccggtgttctggcccatcctggtcatgtacttcgtcatgctcttctgcatcacca 58711630
Query: 656 tgaagaggcagataaag 672
|||||||||||||||||
Sbjct: 58711629 tgaagaggcagataaag 58711613
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 536 ggcacgcagcgaccaagggcgtcctcgtggccatggtctgcaccttcttcgaggccttca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58933706 ggcacgcagcgaccaagggcgtcctcgtggccatggtctgcaccttcttcgaggccttca 58933647
Query: 596 acgtcccggtgttctggcccatcctggtcatgtacttcgtcatgctcttctgcatcacca 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58933646 acgtcccggtgttctggcccatcctggtcatgtacttcgtcatgctcttctgcatcacca 58933587
Query: 656 tgaagaggcagataaag 672
|||||||||||||||||
Sbjct: 58933586 tgaagaggcagataaag 58933570
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 251 agatctaccagtcctggctggacaggtcgacgccatacacggccgtgcgatgggtggtga 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58715906 agatctaccagtcctggctggacaggtcgacgccatacacggccgtgcgatgggtggtga 58715847
Query: 311 cgctgggcctgagcttcgtctacatggtgcgcgtttacctgctgcagg 358
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58715846 cgctgggcctgagcttcgtctacatggtgcgcgtttacctgctgcagg 58715799
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 251 agatctaccagtcctggctggacaggtcgacgccatacacggccgtgcgatgggtggtga 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58937881 agatctaccagtcctggctggacaggtcgacgccatacacggccgtgcgatgggtggtga 58937822
Query: 311 cgctgggcctgagcttcgtctacatggtgcgcgtttacctgctgcagg 358
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58937821 cgctgggcctgagcttcgtctacatggtgcgcgtttacctgctgcagg 58937774
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 355 cagggctggtacatcgtgacctacgccctggggatctaccacctgaatctcttcatagct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58713656 cagggctggtacatcgtgacctacgccctggggatctaccacctgaatctcttcatagct 58713597
Query: 415 ttcctctcccccaaagtggacccttccctgatggaggactcag 457
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58713596 ttcctctcccccaaagtggacccttccctgatggaggactcag 58713554
Score = 196 bits (99), Expect = 2e-47
Identities = 102/103 (99%)
Strand = Plus / Minus
Query: 355 cagggctggtacatcgtgacctacgccctggggatctaccacctgaatctcttcatagct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58935635 cagggctggtacatcgtgacctacgccctggggatctaccacctgaatctcttcatagct 58935576
Query: 415 ttcctctcccccaaagtggacccttccctgatggaggactcag 457
||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 58935575 ttcctctcccccaaagtggacccttccctgatggaagactcag 58935533
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 454 tcagatgatggcccctcgttgccgaccaaacagaacgaggagttccggcccttcattcga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58712723 tcagatgatggcccctcgttgccgaccaaacagaacgaggagttccggcccttcattcga 58712664
Query: 514 aggctcccggagttcaaattttgg 537
||||||||||||||||||||||||
Sbjct: 58712663 aggctcccggagttcaaattttgg 58712640
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 169 agaatgtccgaaggtgacagcgtgggagactctgtccatgggaagccttccgtggtgtac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58717596 agaatgtccgaaggtgacagcgtgggagactctgtccatgggaagccttccgtggtgtac 58717537
Query: 229 agattcttcacacggcttgggcag 252
||||||||||||||||||||||||
Sbjct: 58717536 agattcttcacacggcttgggcag 58717513
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 169 agaatgtccgaaggtgacagcgtgggagactctgtccatgggaagccttccgtggtgtac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58939571 agaatgtccgaaggtgacagcgtgggagactctgtccatgggaagccttccgtggtgtac 58939512
Query: 229 agattcttcacacggcttgggcag 252
||||||||||||||||||||||||
Sbjct: 58939511 agattcttcacacggcttgggcag 58939488
Score = 159 bits (80), Expect = 4e-36
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 454 tcagatgatggcccctcgttgccgaccaaacagaacgaggagttccggcccttcattcga 513
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58934680 tcagatgacggcccctcgttgccgaccaaacagaacgaggagttccggcccttcattcga 58934621
Query: 514 aggctcccggagttcaaattttgg 537
||||||||||||||||||||||||
Sbjct: 58934620 aggctcccggagttcaaattttgg 58934597
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,660,650
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 15
Length of query: 1239
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1218
Effective length of database: 2,808,413,156
Effective search space: 3420647224008
Effective search space used: 3420647224008
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)