Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008231
(931 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069452.1| 2-methoxy-6-polyprenyl-1,4-benzoquinol methy... 518 e-147
>ref|NP_001069452.1| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
precursor [Bos taurus].
Length = 330
Score = 518 bits (1333), Expect = e-147
Identities = 252/293 (86%), Positives = 264/293 (90%)
Frame = +2
Query: 53 MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
MAAPRSWALWSFC C SR + GCR+PGLRSS PR PLGAR LSQEK ATETHFGFETVS
Sbjct: 1 MAAPRSWALWSFCGCGWSRAVSGCRLPGLRSSSPRGPLGARLLSQEKEATETHFGFETVS 60
Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHR+WKDLLLWKM PFPGTQLLDVAGGTGDI
Sbjct: 61 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMRPFPGTQLLDVAGGTGDI 120
Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
AFRFLNYV NLSWEEIA+KYQNEEDSLGGSHVM+CDIN+EMLKIG
Sbjct: 121 AFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIARKYQNEEDSLGGSHVMVCDINKEMLKIG 180
Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
++KA AQGYKAGL W+LGDAEELPFDD+KFDVYTIAFGIRNVTHID+ALQEAHRVLKPGG
Sbjct: 181 KQKARAQGYKAGLAWILGDAEELPFDDNKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGG 240
Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
RFLCLEFSQVNNPL+SRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIR FPS
Sbjct: 241 RFLCLEFSQVNNPLLSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRQFPS 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,518,687
Number of extensions: 1136256
Number of successful extensions: 3966
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3959
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,306,398
Effective search space: 2975730784
Effective search space used: 2975730784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008231
(931 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854268.1| PREDICTED: similar to CG2453-PA [Canis familiar... 487 e-138
>ref|XP_854268.1| PREDICTED: similar to CG2453-PA [Canis familiaris].
Length = 327
Score = 487 bits (1254), Expect = e-138
Identities = 243/293 (82%), Positives = 254/293 (86%)
Frame = +2
Query: 53 MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
MA RS ALWS+C R SRVM CR+ GL SSWP PLGAR LSQEK ATETHFGFETVS
Sbjct: 1 MATHRSCALWSYCGRRWSRVMRCCRLSGLCSSWPSGPLGARHLSQEKPATETHFGFETVS 60
Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
EEEK GKVY VFESVAKKYDVMNDMMSLGIHR+WKDLLL KM PFPGTQLLDVAGGTGDI
Sbjct: 61 EEEKRGKVYHVFESVAKKYDVMNDMMSLGIHRIWKDLLLCKMRPFPGTQLLDVAGGTGDI 120
Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
AFRFLNYV NLSWEEIAKKYQNEED LGGS V++CDIN+EMLKIG
Sbjct: 121 AFRFLNYVQAQHKGKQKRQLRAQQNLSWEEIAKKYQNEEDPLGGSRVVVCDINKEMLKIG 180
Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
++KA AQGYKAGL WVLGDAEELPFDDDKFDVYTIAFGIRNVTHID+ALQEAHRVLKPGG
Sbjct: 181 KQKARAQGYKAGLAWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGG 240
Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
RFLCLEFSQVNNPL+SRLYD+YSFQVIPVLGEVIAGDWKSYQYLVESIR FPS
Sbjct: 241 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRQFPS 293
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,338,483
Number of extensions: 1176536
Number of successful extensions: 4281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4258
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 207
Effective length of database: 15,440,896
Effective search space: 3196265472
Effective search space used: 3196265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008231
(931 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359169.1| PREDICTED: ubiquinone biosynthesis methyltra... 569 e-163
>ref|XP_003359169.1| PREDICTED: ubiquinone biosynthesis methyltransferase COQ5,
mitochondrial [Sus scrofa].
Length = 327
Score = 569 bits (1467), Expect = e-163
Identities = 276/293 (94%), Positives = 276/293 (94%)
Frame = +2
Query: 53 MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS
Sbjct: 1 MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 60
Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI
Sbjct: 61 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 120
Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
AFRFLNYV NLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG
Sbjct: 121 AFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 180
Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG
Sbjct: 181 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 240
Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIR FPS
Sbjct: 241 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRQFPS 293
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,500,721
Number of extensions: 734062
Number of successful extensions: 2605
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2595
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 211
Effective length of database: 8,879,129
Effective search space: 1873496219
Effective search space used: 1873496219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008231
(931 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080780.1| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylas... 452 e-127
>ref|NP_080780.1| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
precursor [Mus musculus].
Length = 327
Score = 452 bits (1163), Expect = e-127
Identities = 222/293 (75%), Positives = 240/293 (81%)
Frame = +2
Query: 53 MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
MAAPR LW C R CR+PG SWP + LG R LSQEKRA ETHFGFETVS
Sbjct: 1 MAAPRCCVLWRVCGRGWWRATGHCRLPGCHRSWPWATLGTRSLSQEKRAAETHFGFETVS 60
Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
E EKG KVYQVFE+VAKKYD+MNDMMSLGIHR WKDLL+ KMHP PGTQLLD+AGGTGDI
Sbjct: 61 EGEKGSKVYQVFENVAKKYDLMNDMMSLGIHRAWKDLLIRKMHPLPGTQLLDMAGGTGDI 120
Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
AFRFL+YV NLSWEEIAKKYQNEEDSLGGS +CDINREMLK+G
Sbjct: 121 AFRFLSYVQAQHQRRQRRQLRTQQNLSWEEIAKKYQNEEDSLGGSLATVCDINREMLKVG 180
Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
++KA QG+ AGL WVLGDAEELPFDDD FDVYTIAFGIRNVTHID+ALQEAHRVLKPGG
Sbjct: 181 KQKALDQGHTAGLAWVLGDAEELPFDDDSFDVYTIAFGIRNVTHIDQALQEAHRVLKPGG 240
Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
RFLCLEF QVN+PL+SRLYD+YSFQVIPV+GEVIAGDWKSYQYLVESIR FP+
Sbjct: 241 RFLCLEFGQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQYLVESIRKFPN 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,277,245
Number of extensions: 966305
Number of successful extensions: 3426
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3409
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 209
Effective length of database: 12,583,923
Effective search space: 2630039907
Effective search space used: 2630039907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008231
(931 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115690.3| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylas... 493 e-139
>ref|NP_115690.3| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
precursor [Homo sapiens].
Length = 327
Score = 493 bits (1269), Expect = e-139
Identities = 241/293 (82%), Positives = 257/293 (87%)
Frame = +2
Query: 53 MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
MAAP S ALWS+C SR M GC++ GLRSSWP L AR LSQEKRA ETHFGFETVS
Sbjct: 1 MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS 60
Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHR+WKDLLLWKMHP PGTQLLDVAGGTGDI
Sbjct: 61 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI 120
Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
AFRFLNYV NLSWEEIAK+YQNEEDSLGGS V++CDIN+EMLK+G
Sbjct: 121 AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG 180
Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
++KA AQGY+AGL WVLGDAEELPFDDDKFD+YTIAFGIRNVTHID+ALQEAHRVLKPGG
Sbjct: 181 KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG 240
Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
RFLCLEFSQVNNPL+SRLYD+YSFQVIPVLGEVIAGDWKSYQYLVESIR FPS
Sbjct: 241 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPS 293
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,554,465
Number of extensions: 1156019
Number of successful extensions: 4132
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4112
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,934,836
Effective search space: 3106445888
Effective search space used: 3106445888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008231
(931 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 504 e-140
>Sscrofa_Chr14
|| Length = 153851969
Score = 504 bits (254), Expect = e-140
Identities = 254/254 (100%)
Strand = Plus / Plus
Query: 1 atcgaatgaagcaacgcgacgtgctgtctggcggcggtcactcgactgcaagatggcggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42936392 atcgaatgaagcaacgcgacgtgctgtctggcggcggtcactcgactgcaagatggcggc 42936451
Query: 61 ccccagaagctgggctctatggagcttctgctgctgtcgattgtcgcgggtgatgccggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42936452 ccccagaagctgggctctatggagcttctgctgctgtcgattgtcgcgggtgatgccggg 42936511
Query: 121 ctgcagaattcctgggcttcgtagctcgtggcccaggagcccgctgggtgcacggcctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42936512 ctgcagaattcctgggcttcgtagctcgtggcccaggagcccgctgggtgcacggcctct 42936571
Query: 181 ctcccaagagaagcgggcaacggaaacgcacttcgggtttgagactgtgtcggaagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42936572 ctcccaagagaagcgggcaacggaaacgcacttcgggtttgagactgtgtcggaagagga 42936631
Query: 241 aaaggggggcaaag 254
||||||||||||||
Sbjct: 42936632 aaaggggggcaaag 42936645
Score = 452 bits (228), Expect = e-124
Identities = 228/228 (100%)
Strand = Plus / Plus
Query: 400 cacaggtgacatcgcattccgtttccttaattatgttcaggcgcagcatcagagaaagca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42944203 cacaggtgacatcgcattccgtttccttaattatgttcaggcgcagcatcagagaaagca 42944262
Query: 460 gaagaggcagttaagggcccaacaaaatttatcctgggaagaaattgccaaaaagtacca 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42944263 gaagaggcagttaagggcccaacaaaatttatcctgggaagaaattgccaaaaagtacca 42944322
Query: 520 gaatgaagaggattccttgggtggttctcacgtcatgatctgtgacatcaacagggagat 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42944323 gaatgaagaggattccttgggtggttctcacgtcatgatctgtgacatcaacagggagat 42944382
Query: 580 gctaaagattggaagacggaaagcctgtgcccagggatacaaagctgg 627
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42944383 gctaaagattggaagacggaaagcctgtgcccagggatacaaagctgg 42944430
Score = 307 bits (155), Expect = 6e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 252 aagtctatcaggtgtttgaaagtgtggccaagaagtatgatgtgatgaacgatatgatga 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42941561 aagtctatcaggtgtttgaaagtgtggccaagaagtatgatgtgatgaacgatatgatga 42941620
Query: 312 gtcttggtatccatcgtctttggaaggatttgctgctctggaagatgcacccgtttcctg 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42941621 gtcttggtatccatcgtctttggaaggatttgctgctctggaagatgcacccgtttcctg 42941680
Query: 372 gcacccagctgctcgatgttgctggaggcacaggt 406
|||||||||||||||||||||||||||||||||||
Sbjct: 42941681 gcacccagctgctcgatgttgctggaggcacaggt 42941715
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 626 ggacttgattgggtattgggagatgctgaagagctaccctttgatgatgacaagtttgat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42949028 ggacttgattgggtattgggagatgctgaagagctaccctttgatgatgacaagtttgat 42949087
Query: 686 gtttacaccattgcctttgggatccggaatgtcacacacattgatcggg 734
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42949088 gtttacaccattgcctttgggatccggaatgtcacacacattgatcggg 42949136
Score = 204 bits (103), Expect = 6e-50
Identities = 109/111 (98%)
Strand = Plus / Plus
Query: 821 aggctctatgatgtatatagcttccaggtcattcctgtcctgggagaggtcattgcagga 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42952415 aggctctatgatgtatatagcttccaggtcattcctgtcctgggagaggtcattgcagga 42952474
Query: 881 gactggaagtcctaccaataccttgtagagagtatccgaacattcccatct 931
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 42952475 gactggaagtcctaccaataccttgtagagagtatccgacaattcccatct 42952525
Score = 180 bits (91), Expect = 9e-43
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 733 ggcactccaagaagcccatcgggtcctgaaaccaggaggacggttcctgtgtttggagtt 792
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Sbjct: 42951738 ggcactccaagaagcccatcgggtcctgaaaccaggaggacggttcctgtgtttggagtt 42951797
Query: 793 tagccaagtgaacaaccccctcgtatccagg 823
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Sbjct: 42951798 tagccaagtgaacaaccccctcgtatccagg 42951828
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,245,128
Number of extensions: 136
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 6
Length of query: 931
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 910
Effective length of database: 2,808,413,156
Effective search space: 2555655971960
Effective search space used: 2555655971960
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)