Animal-Genome cDNA 20110601C-008231


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008231
         (931 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069452.1| 2-methoxy-6-polyprenyl-1,4-benzoquinol methy...   518   e-147

>ref|NP_001069452.1| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
           precursor [Bos taurus].
          Length = 330

 Score =  518 bits (1333), Expect = e-147
 Identities = 252/293 (86%), Positives = 264/293 (90%)
 Frame = +2

Query: 53  MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
           MAAPRSWALWSFC C  SR + GCR+PGLRSS PR PLGAR LSQEK ATETHFGFETVS
Sbjct: 1   MAAPRSWALWSFCGCGWSRAVSGCRLPGLRSSSPRGPLGARLLSQEKEATETHFGFETVS 60

Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
           EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHR+WKDLLLWKM PFPGTQLLDVAGGTGDI
Sbjct: 61  EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMRPFPGTQLLDVAGGTGDI 120

Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
           AFRFLNYV                NLSWEEIA+KYQNEEDSLGGSHVM+CDIN+EMLKIG
Sbjct: 121 AFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIARKYQNEEDSLGGSHVMVCDINKEMLKIG 180

Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
           ++KA AQGYKAGL W+LGDAEELPFDD+KFDVYTIAFGIRNVTHID+ALQEAHRVLKPGG
Sbjct: 181 KQKARAQGYKAGLAWILGDAEELPFDDNKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGG 240

Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
           RFLCLEFSQVNNPL+SRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIR FPS
Sbjct: 241 RFLCLEFSQVNNPLLSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRQFPS 293


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,518,687
Number of extensions: 1136256
Number of successful extensions: 3966
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3959
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,306,398
Effective search space: 2975730784
Effective search space used: 2975730784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008231
         (931 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_854268.1| PREDICTED: similar to CG2453-PA [Canis familiar...   487   e-138

>ref|XP_854268.1| PREDICTED: similar to CG2453-PA [Canis familiaris].
          Length = 327

 Score =  487 bits (1254), Expect = e-138
 Identities = 243/293 (82%), Positives = 254/293 (86%)
 Frame = +2

Query: 53  MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
           MA  RS ALWS+C  R SRVM  CR+ GL SSWP  PLGAR LSQEK ATETHFGFETVS
Sbjct: 1   MATHRSCALWSYCGRRWSRVMRCCRLSGLCSSWPSGPLGARHLSQEKPATETHFGFETVS 60

Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
           EEEK GKVY VFESVAKKYDVMNDMMSLGIHR+WKDLLL KM PFPGTQLLDVAGGTGDI
Sbjct: 61  EEEKRGKVYHVFESVAKKYDVMNDMMSLGIHRIWKDLLLCKMRPFPGTQLLDVAGGTGDI 120

Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
           AFRFLNYV                NLSWEEIAKKYQNEED LGGS V++CDIN+EMLKIG
Sbjct: 121 AFRFLNYVQAQHKGKQKRQLRAQQNLSWEEIAKKYQNEEDPLGGSRVVVCDINKEMLKIG 180

Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
           ++KA AQGYKAGL WVLGDAEELPFDDDKFDVYTIAFGIRNVTHID+ALQEAHRVLKPGG
Sbjct: 181 KQKARAQGYKAGLAWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDQALQEAHRVLKPGG 240

Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
           RFLCLEFSQVNNPL+SRLYD+YSFQVIPVLGEVIAGDWKSYQYLVESIR FPS
Sbjct: 241 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRQFPS 293


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,338,483
Number of extensions: 1176536
Number of successful extensions: 4281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4258
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 207
Effective length of database: 15,440,896
Effective search space: 3196265472
Effective search space used: 3196265472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008231
         (931 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359169.1| PREDICTED: ubiquinone biosynthesis methyltra...   569   e-163

>ref|XP_003359169.1| PREDICTED: ubiquinone biosynthesis methyltransferase COQ5,
           mitochondrial [Sus scrofa].
          Length = 327

 Score =  569 bits (1467), Expect = e-163
 Identities = 276/293 (94%), Positives = 276/293 (94%)
 Frame = +2

Query: 53  MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
           MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS
Sbjct: 1   MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 60

Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
           EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI
Sbjct: 61  EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 120

Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
           AFRFLNYV                NLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG
Sbjct: 121 AFRFLNYVQAQHQRKQKRQLRAQQNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 180

Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
           RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG
Sbjct: 181 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 240

Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
           RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIR FPS
Sbjct: 241 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRQFPS 293


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,500,721
Number of extensions: 734062
Number of successful extensions: 2605
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2595
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 211
Effective length of database: 8,879,129
Effective search space: 1873496219
Effective search space used: 1873496219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008231
         (931 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080780.1| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylas...   452   e-127

>ref|NP_080780.1| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
           precursor [Mus musculus].
          Length = 327

 Score =  452 bits (1163), Expect = e-127
 Identities = 222/293 (75%), Positives = 240/293 (81%)
 Frame = +2

Query: 53  MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
           MAAPR   LW  C     R    CR+PG   SWP + LG R LSQEKRA ETHFGFETVS
Sbjct: 1   MAAPRCCVLWRVCGRGWWRATGHCRLPGCHRSWPWATLGTRSLSQEKRAAETHFGFETVS 60

Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
           E EKG KVYQVFE+VAKKYD+MNDMMSLGIHR WKDLL+ KMHP PGTQLLD+AGGTGDI
Sbjct: 61  EGEKGSKVYQVFENVAKKYDLMNDMMSLGIHRAWKDLLIRKMHPLPGTQLLDMAGGTGDI 120

Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
           AFRFL+YV                NLSWEEIAKKYQNEEDSLGGS   +CDINREMLK+G
Sbjct: 121 AFRFLSYVQAQHQRRQRRQLRTQQNLSWEEIAKKYQNEEDSLGGSLATVCDINREMLKVG 180

Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
           ++KA  QG+ AGL WVLGDAEELPFDDD FDVYTIAFGIRNVTHID+ALQEAHRVLKPGG
Sbjct: 181 KQKALDQGHTAGLAWVLGDAEELPFDDDSFDVYTIAFGIRNVTHIDQALQEAHRVLKPGG 240

Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
           RFLCLEF QVN+PL+SRLYD+YSFQVIPV+GEVIAGDWKSYQYLVESIR FP+
Sbjct: 241 RFLCLEFGQVNDPLISRLYDLYSFQVIPVIGEVIAGDWKSYQYLVESIRKFPN 293


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,277,245
Number of extensions: 966305
Number of successful extensions: 3426
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3409
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 209
Effective length of database: 12,583,923
Effective search space: 2630039907
Effective search space used: 2630039907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008231
         (931 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_115690.3| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylas...   493   e-139

>ref|NP_115690.3| 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
           precursor [Homo sapiens].
          Length = 327

 Score =  493 bits (1269), Expect = e-139
 Identities = 241/293 (82%), Positives = 257/293 (87%)
 Frame = +2

Query: 53  MAAPRSWALWSFCCCRLSRVMPGCRIPGLRSSWPRSPLGARPLSQEKRATETHFGFETVS 232
           MAAP S ALWS+C    SR M GC++ GLRSSWP   L AR LSQEKRA ETHFGFETVS
Sbjct: 1   MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS 60

Query: 233 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRLWKDLLLWKMHPFPGTQLLDVAGGTGDI 412
           EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHR+WKDLLLWKMHP PGTQLLDVAGGTGDI
Sbjct: 61  EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI 120

Query: 413 AFRFLNYVXXXXXXXXXXXXXXXXNLSWEEIAKKYQNEEDSLGGSHVMICDINREMLKIG 592
           AFRFLNYV                NLSWEEIAK+YQNEEDSLGGS V++CDIN+EMLK+G
Sbjct: 121 AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG 180

Query: 593 RRKACAQGYKAGLDWVLGDAEELPFDDDKFDVYTIAFGIRNVTHIDRALQEAHRVLKPGG 772
           ++KA AQGY+AGL WVLGDAEELPFDDDKFD+YTIAFGIRNVTHID+ALQEAHRVLKPGG
Sbjct: 181 KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG 240

Query: 773 RFLCLEFSQVNNPLVSRLYDVYSFQVIPVLGEVIAGDWKSYQYLVESIRTFPS 931
           RFLCLEFSQVNNPL+SRLYD+YSFQVIPVLGEVIAGDWKSYQYLVESIR FPS
Sbjct: 241 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPS 293


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,554,465
Number of extensions: 1156019
Number of successful extensions: 4132
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4112
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 208
Effective length of database: 14,934,836
Effective search space: 3106445888
Effective search space used: 3106445888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008231
         (931 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         504   e-140

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  504 bits (254), Expect = e-140
 Identities = 254/254 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        atcgaatgaagcaacgcgacgtgctgtctggcggcggtcactcgactgcaagatggcggc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42936392 atcgaatgaagcaacgcgacgtgctgtctggcggcggtcactcgactgcaagatggcggc 42936451

                                                                            
Query: 61       ccccagaagctgggctctatggagcttctgctgctgtcgattgtcgcgggtgatgccggg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42936452 ccccagaagctgggctctatggagcttctgctgctgtcgattgtcgcgggtgatgccggg 42936511

                                                                            
Query: 121      ctgcagaattcctgggcttcgtagctcgtggcccaggagcccgctgggtgcacggcctct 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42936512 ctgcagaattcctgggcttcgtagctcgtggcccaggagcccgctgggtgcacggcctct 42936571

                                                                            
Query: 181      ctcccaagagaagcgggcaacggaaacgcacttcgggtttgagactgtgtcggaagagga 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42936572 ctcccaagagaagcgggcaacggaaacgcacttcgggtttgagactgtgtcggaagagga 42936631

                              
Query: 241      aaaggggggcaaag 254
                ||||||||||||||
Sbjct: 42936632 aaaggggggcaaag 42936645



 Score =  452 bits (228), Expect = e-124
 Identities = 228/228 (100%)
 Strand = Plus / Plus

                                                                            
Query: 400      cacaggtgacatcgcattccgtttccttaattatgttcaggcgcagcatcagagaaagca 459
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42944203 cacaggtgacatcgcattccgtttccttaattatgttcaggcgcagcatcagagaaagca 42944262

                                                                            
Query: 460      gaagaggcagttaagggcccaacaaaatttatcctgggaagaaattgccaaaaagtacca 519
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42944263 gaagaggcagttaagggcccaacaaaatttatcctgggaagaaattgccaaaaagtacca 42944322

                                                                            
Query: 520      gaatgaagaggattccttgggtggttctcacgtcatgatctgtgacatcaacagggagat 579
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42944323 gaatgaagaggattccttgggtggttctcacgtcatgatctgtgacatcaacagggagat 42944382

                                                                
Query: 580      gctaaagattggaagacggaaagcctgtgcccagggatacaaagctgg 627
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42944383 gctaaagattggaagacggaaagcctgtgcccagggatacaaagctgg 42944430



 Score =  307 bits (155), Expect = 6e-81
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                            
Query: 252      aagtctatcaggtgtttgaaagtgtggccaagaagtatgatgtgatgaacgatatgatga 311
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42941561 aagtctatcaggtgtttgaaagtgtggccaagaagtatgatgtgatgaacgatatgatga 42941620

                                                                            
Query: 312      gtcttggtatccatcgtctttggaaggatttgctgctctggaagatgcacccgtttcctg 371
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42941621 gtcttggtatccatcgtctttggaaggatttgctgctctggaagatgcacccgtttcctg 42941680

                                                   
Query: 372      gcacccagctgctcgatgttgctggaggcacaggt 406
                |||||||||||||||||||||||||||||||||||
Sbjct: 42941681 gcacccagctgctcgatgttgctggaggcacaggt 42941715



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                            
Query: 626      ggacttgattgggtattgggagatgctgaagagctaccctttgatgatgacaagtttgat 685
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42949028 ggacttgattgggtattgggagatgctgaagagctaccctttgatgatgacaagtttgat 42949087

                                                                 
Query: 686      gtttacaccattgcctttgggatccggaatgtcacacacattgatcggg 734
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42949088 gtttacaccattgcctttgggatccggaatgtcacacacattgatcggg 42949136



 Score =  204 bits (103), Expect = 6e-50
 Identities = 109/111 (98%)
 Strand = Plus / Plus

                                                                            
Query: 821      aggctctatgatgtatatagcttccaggtcattcctgtcctgggagaggtcattgcagga 880
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42952415 aggctctatgatgtatatagcttccaggtcattcctgtcctgggagaggtcattgcagga 42952474

                                                                   
Query: 881      gactggaagtcctaccaataccttgtagagagtatccgaacattcccatct 931
                |||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 42952475 gactggaagtcctaccaataccttgtagagagtatccgacaattcccatct 42952525



 Score =  180 bits (91), Expect = 9e-43
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                            
Query: 733      ggcactccaagaagcccatcgggtcctgaaaccaggaggacggttcctgtgtttggagtt 792
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42951738 ggcactccaagaagcccatcgggtcctgaaaccaggaggacggttcctgtgtttggagtt 42951797

                                               
Query: 793      tagccaagtgaacaaccccctcgtatccagg 823
                |||||||||||||||||||||||||||||||
Sbjct: 42951798 tagccaagtgaacaaccccctcgtatccagg 42951828


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,245,128
Number of extensions: 136
Number of successful extensions: 136
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 6
Length of query: 931
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 910
Effective length of database: 2,808,413,156
Effective search space: 2555655971960
Effective search space used: 2555655971960
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)