Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008232
(1012 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007817.1| protein FADD [Bos taurus]. 202 4e-52
>ref|NP_001007817.1| protein FADD [Bos taurus].
Length = 209
Score = 202 bits (514), Expect = 4e-52
Identities = 113/211 (53%), Positives = 128/211 (60%)
Frame = +1
Query: 148 MDPFXXXXXXXXXXXXXXXXXXXKFLCQGRVGKRKLERVQSGVDLFSVLLEQNELSPEHT 327
MDPF KFLCQ + KRKLE QSG+DLF+VLL+QNEL+ EHT
Sbjct: 1 MDPFLVLLHSVSAGLSSSDLTQLKFLCQNHISKRKLELAQSGLDLFTVLLQQNELNAEHT 60
Query: 328 ALLREXXXXXXXXXXXXXXDAFXXXXXXXXXXXERDLRAAFDIICDNVGKDWRRLARQLK 507
ALLRE D F +RDLRAA +IICDNVGKDWRRLAR L
Sbjct: 61 ALLRELLCSLRRKDLLLRLDDFERGAAGGAAPEDRDLRAAMEIICDNVGKDWRRLARHLG 120
Query: 508 VSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDAAVSHLVDALRACRLNLVADLVXXX 687
VSD KI+AIEEKYPRNL EQVRE LRVWKNS RE+AAVS LV ALR C+LN+VADL+
Sbjct: 121 VSDVKIEAIEEKYPRNLAEQVRELLRVWKNSTRENAAVSCLVGALRGCQLNVVADLI--E 178
Query: 688 XXXXXXXXXXGSSDPVSLISWDEDVPGSGAS 780
GS++P S +WD GAS
Sbjct: 179 EDQRARALQSGSANPGSFTAWDSGSAAPGAS 209
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,850,325
Number of extensions: 1035759
Number of successful extensions: 6794
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6766
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008232
(1012 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854485.1| PREDICTED: similar to FADD protein (FAS-associa... 159 5e-39
>ref|XP_854485.1| PREDICTED: similar to FADD protein (FAS-associating death
domain-containing protein) (Mediator of receptor induced
toxicity) [Canis familiaris].
Length = 175
Score = 159 bits (401), Expect = 5e-39
Identities = 84/122 (68%), Positives = 91/122 (74%), Gaps = 6/122 (4%)
Frame = +1
Query: 427 ERDLRAAFDIICDNVGKDWRRLARQLKVSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRR 606
+ +LRAAFDIICDNVGKDWRRLAR LKV+DAKIDAIEEKYPRNLTEQVRESLRVWK+SRR
Sbjct: 51 DHNLRAAFDIICDNVGKDWRRLARYLKVTDAKIDAIEEKYPRNLTEQVRESLRVWKSSRR 110
Query: 607 EDAAVSHLVDALRACRLNLVADLV------XXXXXXXXXXXXXGSSDPVSLISWDEDVPG 768
EDAAVSHLV ALRAC+LNLVADL+ G +SL SWD D P
Sbjct: 111 EDAAVSHLVRALRACQLNLVADLIEEEQQARGLENESKSSRGGGGGTTMSLRSWDSDRPA 170
Query: 769 SG 774
G
Sbjct: 171 LG 172
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,157,411
Number of extensions: 1045032
Number of successful extensions: 6885
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6847
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008232
(1012 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026967.1| protein FADD [Sus scrofa]. 285 3e-77
Alignment gi|XP_003353785.1| PREDICTED: hypothetical protein LOC100628181... 160 8e-40
>ref|NP_001026967.1| protein FADD [Sus scrofa].
Length = 211
Score = 285 bits (729), Expect = 3e-77
Identities = 154/211 (72%), Positives = 154/211 (72%)
Frame = +1
Query: 148 MDPFXXXXXXXXXXXXXXXXXXXKFLCQGRVGKRKLERVQSGVDLFSVLLEQNELSPEHT 327
MDPF KFLCQGRVGKRKLERVQSGVDLFSVLLEQNELSPEHT
Sbjct: 1 MDPFLVLLHSVSASLSSSELTELKFLCQGRVGKRKLERVQSGVDLFSVLLEQNELSPEHT 60
Query: 328 ALLREXXXXXXXXXXXXXXDAFXXXXXXXXXXXERDLRAAFDIICDNVGKDWRRLARQLK 507
ALLRE DAF ERDLRAAFDIICDNVGKDWRRLARQLK
Sbjct: 61 ALLRELLVSLRRQDLLRRLDAFEAGAAGGAAPEERDLRAAFDIICDNVGKDWRRLARQLK 120
Query: 508 VSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDAAVSHLVDALRACRLNLVADLVXXX 687
VSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDAAVSHLVDALRACRLNLVADLV
Sbjct: 121 VSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDAAVSHLVDALRACRLNLVADLVEEE 180
Query: 688 XXXXXXXXXXGSSDPVSLISWDEDVPGSGAS 780
GSSDPVSLISWDEDVPGSGAS
Sbjct: 181 QQARASRRESGSSDPVSLISWDEDVPGSGAS 211
>ref|XP_003353785.1| PREDICTED: hypothetical protein LOC100628181 [Sus scrofa].
Length = 664
Score = 160 bits (406), Expect = 8e-40
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = +1
Query: 436 LRAAFDIICDNVGKDWRRLARQLKVSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDA 615
LRAAFDIICDNVGKDWRRLARQLKVSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDA
Sbjct: 314 LRAAFDIICDNVGKDWRRLARQLKVSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDA 373
Query: 616 AVSHLVDALRACRLNLVADL 675
AVSHLVDALRACRLNLVADL
Sbjct: 374 AVSHLVDALRACRLNLVADL 393
Score = 62.4 bits (150), Expect = 4e-10
Identities = 33/54 (61%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Frame = +3
Query: 837 HRDDPAGSRDEGRRPPAEPGRTVVPVGPLRGSHCHPHSPV------PAGGCRGT 980
HRDDPAGSRDEGRRPPAEPGRTVVP L PH V P G R T
Sbjct: 394 HRDDPAGSRDEGRRPPAEPGRTVVPPALLLDVGWRPHPGVLSLPDLPGAGVRNT 447
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,131,713
Number of extensions: 702423
Number of successful extensions: 4324
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4289
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008232
(1012 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034305.1| protein FADD [Mus musculus]. 188 7e-48
>ref|NP_034305.1| protein FADD [Mus musculus].
Length = 205
Score = 188 bits (477), Expect = 7e-48
Identities = 98/177 (55%), Positives = 119/177 (67%)
Frame = +1
Query: 148 MDPFXXXXXXXXXXXXXXXXXXXKFLCQGRVGKRKLERVQSGVDLFSVLLEQNELSPEHT 327
MDPF KFLC+ RV KRKLERVQSG+DLF+VLLEQN+L HT
Sbjct: 1 MDPFLVLLHSLSGSLSGNDLMELKFLCRERVSKRKLERVQSGLDLFTVLLEQNDLERGHT 60
Query: 328 ALLREXXXXXXXXXXXXXXDAFXXXXXXXXXXXERDLRAAFDIICDNVGKDWRRLARQLK 507
LLRE D F E DL+ AFDI+CDNVG+DW+RLAR+LK
Sbjct: 61 GLLRELLASLRRHDLLQRLDDFEAGTATAAPPGEADLQVAFDIVCDNVGRDWKRLARELK 120
Query: 508 VSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDAAVSHLVDALRACRLNLVADLV 678
VS+AK+D IEEKYPR+L+E+VRESL+VWKN+ +++A+V+ LV ALR CRLNLVADLV
Sbjct: 121 VSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKKNASVAGLVKALRTCRLNLVADLV 177
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,735,876
Number of extensions: 818089
Number of successful extensions: 4790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4713
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008232
(1012 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003815.1| protein FADD [Homo sapiens]. 210 2e-54
>ref|NP_003815.1| protein FADD [Homo sapiens].
Length = 208
Score = 210 bits (534), Expect = 2e-54
Identities = 113/211 (53%), Positives = 133/211 (63%)
Frame = +1
Query: 148 MDPFXXXXXXXXXXXXXXXXXXXKFLCQGRVGKRKLERVQSGVDLFSVLLEQNELSPEHT 327
MDPF KFLC GRVGKRKLERVQSG+DLFS+LLEQN+L P HT
Sbjct: 1 MDPFLVLLHSVSSSLSSSELTELKFLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHT 60
Query: 328 ALLREXXXXXXXXXXXXXXDAFXXXXXXXXXXXERDLRAAFDIICDNVGKDWRRLARQLK 507
LLRE D F E DL AAF++ICDNVGKDWRRLARQLK
Sbjct: 61 ELLRELLASLRRHDLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLK 120
Query: 508 VSDAKIDAIEEKYPRNLTEQVRESLRVWKNSRREDAAVSHLVDALRACRLNLVADLVXXX 687
VSD KID+IE++YPRNLTE+VRESLR+WKN+ +E+A V+HLV ALR+C++NLVADLV
Sbjct: 121 VSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEV 180
Query: 688 XXXXXXXXXXGSSDPVSLISWDEDVPGSGAS 780
G+ P +SW+ D S AS
Sbjct: 181 QQARDLQNRSGAMSP---MSWNSDASTSEAS 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,290,158
Number of extensions: 1004179
Number of successful extensions: 6295
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6243
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008232
(1012 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1092 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1092 bits (551), Expect = 0.0
Identities = 577/583 (98%), Gaps = 2/583 (0%)
Strand = Plus / Plus
Query: 432 agacctgcgggcagcgtttgatatcatctgcgacaacgtggggaaggactggaggcggct 491
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388619 agacctgcgggcggcgtttgatatcatctgcgacaacgtggggaaggactggaggcggct 1388678
Query: 492 ggctcggcagcttaaagtgtctgacgccaagatcgacgccatcgaggagaagtatccccg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388679 ggctcggcagcttaaagtgtctgacgccaagatcgacgccatcgaggagaagtatccccg 1388738
Query: 552 aaacctgaccgagcaggtgagggagtcgctgcgagtctggaagaacagcaggagggagga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388739 aaacctgaccgagcaggtgagggagtcgctgcgagtctggaagaacagcaggagggagga 1388798
Query: 612 cgcggccgtgtcccacctggtggatgcgctcagggcctgccgcctgaacctggtggccga 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388799 cgcggccgtgtcccacctggtggatgcgctcagggcctgccgcctgaacctggtggccga 1388858
Query: 672 cctggtggaggaagagcagcaggcccgggcctcccggcgggagagcgggagcagcgaccc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388859 cctggtggaggaagagcagcaggcccgggcctcccggcgggagagcgggagcagcgaccc 1388918
Query: 732 tgtgtccctcatttcctgggacgaggacgtgcccgggtcgggagcttcctgatgacccgc 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388919 tgtgtccctcatttcctgggacgaggacgtgcccgggtcgggagcttcctgatgacccgc 1388978
Query: 792 tgctcttcccaaggcccgaggttgaccccgtcctgtctgcaccagcaccgcgatgaccca 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388979 tgctcttcccaaggcccgaggttgaccccgtcctgtctgcaccagcaccgcgatgaccca 1389038
Query: 852 gccgggagccgggatgagggccggcgcccgcccgcagagccaggcaggaccgtggtccct 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389039 gccgggagccgggatgagggccggcgcccgcccgcagagccaggcaggaccgtggtccct 1389098
Query: 912 gtgggccccctgcgagggagccactgtcacccccattca-ccagtcccggcgggaggatg 970
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1389099 gtgggccccctgcgagggagccactgtcacccccattcacccagtcccggcgggaggatg 1389158
Query: 971 ccgtgggactttg-ccagcgtctgtacagatgtggcgtctgac 1012
||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 1389159 ccgtgggaccttgtccagcgtctgtacagatgtgcggtctgac 1389201
Score = 1092 bits (551), Expect = 0.0
Identities = 577/583 (98%), Gaps = 2/583 (0%)
Strand = Plus / Minus
Query: 432 agacctgcgggcagcgtttgatatcatctgcgacaacgtggggaaggactggaggcggct 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565544 agacctgcgggcagcgtttgatatcatctgcgacaacgtggggaaggactggaggcggct 1565485
Query: 492 ggctcggcagcttaaagtgtctgacgccaagatcgacgccatcgaggagaagtatccccg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565484 ggctcggcagcttaaagtgtctgacgccaagatcgacgccatcgaggagaagtatccccg 1565425
Query: 552 aaacctgaccgagcaggtgagggagtcgctgcgagtctggaagaacagcaggagggagga 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565424 aaacctgaccgagcaggtgagggagtcgctgcgagtctggaagaacagcaggagggagga 1565365
Query: 612 cgcggccgtgtcccacctggtggatgcgctcagggcctgccgcctgaacctggtggccga 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565364 cgcggccgtgtcccacctggtggatgcgctcagggcctgccgcctgaacctggtggccga 1565305
Query: 672 cctggtggaggaagagcagcaggcccgggcctcccggcgggagagcgggagcagcgaccc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565304 cctggtggaggaagagcagcaggcccgggcctcccggcgggagagcgggagcagcgaccc 1565245
Query: 732 tgtgtccctcatttcctgggacgaggacgtgcccgggtcgggagcttcctgatgacccgc 791
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1565244 tgtgtccctcatttcctgggatgaggacgtgcccgggtcgggagcttcctgatgacccgc 1565185
Query: 792 tgctcttcccaaggcccgaggttgaccccgtcctgtctgcaccagcaccgcgatgaccca 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565184 tgctcttcccaaggcccgaggttgaccccgtcctgtctgcaccagcaccgcgatgaccca 1565125
Query: 852 gccgggagccgggatgagggccggcgcccgcccgcagagccaggcaggaccgtggtccct 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565124 gccgggagccgggatgagggccggcgcccgcccgcagagccaggcaggaccgtggtccct 1565065
Query: 912 gtgggccccctgcgagggagccactgtcacccccattca-ccagtcccggcgggaggatg 970
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1565064 gtgggccccctgcgagggagccactgtcacccccattcacccagtcccggcgggaggatg 1565005
Query: 971 ccgtgggactttg-ccagcgtctgtacagatgtggcgtctgac 1012
||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 1565004 ccgtgggaccttgtccagcgtctgtacagatgtgcggtctgac 1564962
Score = 763 bits (385), Expect = 0.0
Identities = 388/389 (99%)
Strand = Plus / Minus
Query: 7 agacttccggtggcggggcgcagggcgggcaaagtgggagctgcggctgccagacggagg 66
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1567896 agacttccggtggcggggcgcagggcgggcaaagcgggagctgcggctgccagacggagg 1567837
Query: 67 agctccggcgcgtgaggaggcgggggacccggtctgccggagcgcgggccggcgagcggg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567836 agctccggcgcgtgaggaggcgggggacccggtctgccggagcgcgggccggcgagcggg 1567777
Query: 127 cagcagcccgcacccgccgccatggacccgttcctggtgctgctgcactcggtgtcggcc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567776 cagcagcccgcacccgccgccatggacccgttcctggtgctgctgcactcggtgtcggcc 1567717
Query: 187 agcctgtcaagcagcgagctgaccgagctcaagttcctgtgccagggacgcgtgggcaag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567716 agcctgtcaagcagcgagctgaccgagctcaagttcctgtgccagggacgcgtgggcaag 1567657
Query: 247 aggaagctggagcgcgtgcagagcggcgtggacctcttctccgtgctcctggagcagaac 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567656 aggaagctggagcgcgtgcagagcggcgtggacctcttctccgtgctcctggagcagaac 1567597
Query: 307 gagctgagtcccgagcacactgcgctgctgcgcgagctgctcgtctccctgcggcgccag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567596 gagctgagtcccgagcacactgcgctgctgcgcgagctgctcgtctccctgcggcgccag 1567537
Query: 367 gacctgctgcggcgcctggacgccttcga 395
|||||||||||||||||||||||||||||
Sbjct: 1567536 gacctgctgcggcgcctggacgccttcga 1567508
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,771,299
Number of extensions: 415
Number of successful extensions: 415
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 3
Length of query: 1012
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 991
Effective length of database: 2,808,413,156
Effective search space: 2783137437596
Effective search space used: 2783137437596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)