Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008242
(1195 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029775.1| eukaryotic translation initiation factor 3 s... 738 0.0
>ref|NP_001029775.1| eukaryotic translation initiation factor 3 subunit E [Bos taurus].
Length = 445
Score = 738 bits (1906), Expect = 0.0
Identities = 364/366 (99%), Positives = 365/366 (99%)
Frame = +2
Query: 92 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 271
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
Query: 272 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 451
LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
Sbjct: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
Query: 452 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 631
HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
Sbjct: 121 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 180
Query: 632 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 811
NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
Sbjct: 181 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 240
Query: 812 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 991
QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
Sbjct: 241 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 300
Query: 992 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFEDFCRIHQCISINMLADKL 1171
VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFE FCRIHQCISINMLADKL
Sbjct: 301 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL 360
Query: 1172 NMTPEK 1189
NMTPE+
Sbjct: 361 NMTPEE 366
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,793,062
Number of extensions: 951659
Number of successful extensions: 2728
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2728
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 294
Effective length of database: 14,240,222
Effective search space: 4186625268
Effective search space used: 4186625268
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008242
(1195 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532304.2| PREDICTED: similar to eukaryotic translation in... 738 0.0
Alignment gi|XP_860173.1| PREDICTED: similar to eukaryotic translation in... 643 0.0
Alignment gi|XP_860097.1| PREDICTED: similar to eukaryotic translation in... 558 e-159
Alignment gi|XP_860062.1| PREDICTED: similar to eukaryotic translation in... 558 e-159
Alignment gi|XP_860022.1| PREDICTED: similar to eukaryotic translation in... 521 e-148
Alignment gi|XP_860131.1| PREDICTED: similar to eukaryotic translation in... 490 e-139
Alignment gi|XP_859984.1| PREDICTED: similar to eukaryotic translation in... 424 e-118
Alignment gi|XP_859946.1| PREDICTED: similar to eukaryotic translation in... 347 1e-95
Alignment gi|XP_859915.1| PREDICTED: similar to eukaryotic translation in... 245 7e-65
>ref|XP_532304.2| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 2 [Canis familiaris].
Length = 445
Score = 738 bits (1906), Expect = 0.0
Identities = 364/366 (99%), Positives = 365/366 (99%)
Frame = +2
Query: 92 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 271
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
Query: 272 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 451
LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
Sbjct: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
Query: 452 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 631
HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
Sbjct: 121 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 180
Query: 632 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 811
NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
Sbjct: 181 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 240
Query: 812 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 991
QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
Sbjct: 241 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 300
Query: 992 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFEDFCRIHQCISINMLADKL 1171
VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFE FCRIHQCISINMLADKL
Sbjct: 301 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL 360
Query: 1172 NMTPEK 1189
NMTPE+
Sbjct: 361 NMTPEE 366
>ref|XP_860173.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 10 [Canis familiaris].
Length = 330
Score = 643 bits (1659), Expect(2) = 0.0
Identities = 317/317 (100%), Positives = 317/317 (100%)
Frame = +2
Query: 92 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 271
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
Query: 272 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 451
LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
Sbjct: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
Query: 452 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 631
HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
Sbjct: 121 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 180
Query: 632 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 811
NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
Sbjct: 181 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 240
Query: 812 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 991
QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
Sbjct: 241 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 300
Query: 992 VNFDFDGAQKKLRECES 1042
VNFDFDGAQKKLRECES
Sbjct: 301 VNFDFDGAQKKLRECES 317
Score = 23.5 bits (49), Expect(2) = 0.0
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 1153 HVGR*TEYDSRKT 1191
HVGR TE+DSR++
Sbjct: 318 HVGRQTEHDSRRS 330
>ref|XP_860097.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 8 [Canis familiaris].
Length = 352
Score = 558 bits (1437), Expect = e-159
Identities = 271/273 (99%), Positives = 272/273 (99%)
Frame = +2
Query: 371 MFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYF 550
MFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYF
Sbjct: 1 MFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYF 60
Query: 551 FRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTW 730
FRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTW
Sbjct: 61 FRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTW 120
Query: 731 LIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQV 910
LIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQV
Sbjct: 121 LIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQV 180
Query: 911 LKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFI 1090
LKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFI
Sbjct: 181 LKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFI 240
Query: 1091 ENARLFIFEDFCRIHQCISINMLADKLNMTPEK 1189
ENARLFIFE FCRIHQCISINMLADKLNMTPE+
Sbjct: 241 ENARLFIFETFCRIHQCISINMLADKLNMTPEE 273
>ref|XP_860062.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 7 [Canis familiaris].
Length = 352
Score = 558 bits (1437), Expect = e-159
Identities = 271/273 (99%), Positives = 272/273 (99%)
Frame = +2
Query: 371 MFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYF 550
MFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYF
Sbjct: 1 MFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYF 60
Query: 551 FRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTW 730
FRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTW
Sbjct: 61 FRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTW 120
Query: 731 LIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQV 910
LIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQV
Sbjct: 121 LIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQV 180
Query: 911 LKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFI 1090
LKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFI
Sbjct: 181 LKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFI 240
Query: 1091 ENARLFIFEDFCRIHQCISINMLADKLNMTPEK 1189
ENARLFIFE FCRIHQCISINMLADKLNMTPE+
Sbjct: 241 ENARLFIFETFCRIHQCISINMLADKLNMTPEE 273
>ref|XP_860022.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 6 [Canis familiaris].
Length = 334
Score = 521 bits (1342), Expect = e-148
Identities = 253/255 (99%), Positives = 254/255 (99%)
Frame = +2
Query: 425 MLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWG 604
MLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWG
Sbjct: 1 MLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWG 60
Query: 605 KLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDN 784
KLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDN
Sbjct: 61 KLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDN 120
Query: 785 IIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDP 964
IIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDP
Sbjct: 121 IIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDP 180
Query: 965 ITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFEDFCRIHQCI 1144
ITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFE FCRIHQCI
Sbjct: 181 ITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCI 240
Query: 1145 SINMLADKLNMTPEK 1189
SINMLADKLNMTPE+
Sbjct: 241 SINMLADKLNMTPEE 255
>ref|XP_860131.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 9 [Canis familiaris].
Length = 332
Score = 490 bits (1262), Expect = e-139
Identities = 243/251 (96%), Positives = 243/251 (96%)
Frame = +2
Query: 92 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 271
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
Query: 272 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 451
LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
Sbjct: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
Query: 452 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 631
HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
Sbjct: 121 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 180
Query: 632 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 811
NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
Sbjct: 181 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 240
Query: 812 QYLNAIQTMCP 844
L M P
Sbjct: 241 HMLADKLNMTP 251
>ref|XP_859984.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 5 [Canis familiaris].
Length = 318
Score = 424 bits (1089), Expect = e-118
Identities = 207/209 (99%), Positives = 208/209 (99%)
Frame = +2
Query: 563 VPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHW 742
VPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHW
Sbjct: 31 VPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHW 90
Query: 743 SLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDL 922
SLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDL
Sbjct: 91 SLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDL 150
Query: 923 VKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENAR 1102
VKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENAR
Sbjct: 151 VKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENAR 210
Query: 1103 LFIFEDFCRIHQCISINMLADKLNMTPEK 1189
LFIFE FCRIHQCISINMLADKLNMTPE+
Sbjct: 211 LFIFETFCRIHQCISINMLADKLNMTPEE 239
Score = 65.1 bits (157), Expect = 1e-10
Identities = 35/46 (76%), Positives = 36/46 (78%), Gaps = 4/46 (8%)
Frame = +2
Query: 92 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEI----YNEKELLQGKL 217
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKE+ N L GKL
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEVPATDRNALSSLWGKL 46
>ref|XP_859946.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 4 [Canis familiaris].
Length = 259
Score = 347 bits (891), Expect = 1e-95
Identities = 170/181 (93%), Positives = 176/181 (97%)
Frame = +2
Query: 647 MEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNA 826
ME +++ +E I +NSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNA
Sbjct: 1 MESISQSREVI-SNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNA 59
Query: 827 IQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDF 1006
IQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDF
Sbjct: 60 IQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDF 119
Query: 1007 DGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFEDFCRIHQCISINMLADKLNMTPE 1186
DGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFE FCRIHQCISINMLADKLNMTPE
Sbjct: 120 DGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPE 179
Query: 1187 K 1189
+
Sbjct: 180 E 180
>ref|XP_859915.1| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 6 (predicted) isoform 3 [Canis familiaris].
Length = 134
Score = 245 bits (625), Expect = 7e-65
Identities = 122/122 (100%), Positives = 122/122 (100%)
Frame = +2
Query: 92 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 271
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
Query: 272 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 451
LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
Sbjct: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
Query: 452 HG 457
HG
Sbjct: 121 HG 122
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,538,300
Number of extensions: 977588
Number of successful extensions: 2732
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2731
Number of HSP's successfully gapped: 11
Length of query: 398
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 293
Effective length of database: 15,374,224
Effective search space: 4504647632
Effective search space used: 4504647632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008242
(1195 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925424.3| PREDICTED: eukaryotic translation initiation... 633 0.0
>ref|XP_001925424.3| PREDICTED: eukaryotic translation initiation factor 3 subunit E [Sus
scrofa].
Length = 396
Score = 633 bits (1633), Expect = 0.0
Identities = 310/317 (97%), Positives = 314/317 (99%)
Frame = +2
Query: 239 MVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRD 418
MVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTR+
Sbjct: 1 MVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRE 60
Query: 419 GRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSL 598
GRMLF++L KHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSL
Sbjct: 61 GRMLFNFLGAKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSL 120
Query: 599 WGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGR 778
WGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGR
Sbjct: 121 WGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGR 180
Query: 779 DNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYK 958
DNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYK
Sbjct: 181 DNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYK 240
Query: 959 DPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFEDFCRIHQ 1138
DPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFE FCRIHQ
Sbjct: 241 DPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQ 300
Query: 1139 CISINMLADKLNMTPEK 1189
CISINMLADKLNMTPE+
Sbjct: 301 CISINMLADKLNMTPEE 317
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,424,232
Number of extensions: 598344
Number of successful extensions: 1599
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1599
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,829,335
Effective search space: 2622312495
Effective search space used: 2622312495
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008242
(1195 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032414.1| eukaryotic translation initiation factor 3 subu... 738 0.0
>ref|NP_032414.1| eukaryotic translation initiation factor 3 subunit E [Mus musculus].
Length = 445
Score = 738 bits (1906), Expect = 0.0
Identities = 364/366 (99%), Positives = 365/366 (99%)
Frame = +2
Query: 92 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 271
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
Query: 272 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 451
LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
Sbjct: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
Query: 452 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 631
HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
Sbjct: 121 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 180
Query: 632 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 811
NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
Sbjct: 181 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 240
Query: 812 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 991
QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
Sbjct: 241 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 300
Query: 992 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFEDFCRIHQCISINMLADKL 1171
VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFE FCRIHQCISINMLADKL
Sbjct: 301 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL 360
Query: 1172 NMTPEK 1189
NMTPE+
Sbjct: 361 NMTPEE 366
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,337,490
Number of extensions: 850816
Number of successful extensions: 2428
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2428
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 295
Effective length of database: 12,523,851
Effective search space: 3694536045
Effective search space used: 3694536045
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008242
(1195 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001559.1| eukaryotic translation initiation factor 3 subu... 738 0.0
>ref|NP_001559.1| eukaryotic translation initiation factor 3 subunit E [Homo sapiens].
Length = 445
Score = 738 bits (1906), Expect = 0.0
Identities = 364/366 (99%), Positives = 365/366 (99%)
Frame = +2
Query: 92 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 271
MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
Sbjct: 1 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN 60
Query: 272 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 451
LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
Sbjct: 61 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK 120
Query: 452 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 631
HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
Sbjct: 121 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ 180
Query: 632 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 811
NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
Sbjct: 181 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP 240
Query: 812 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 991
QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
Sbjct: 241 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY 300
Query: 992 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFEDFCRIHQCISINMLADKL 1171
VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFE FCRIHQCISINMLADKL
Sbjct: 301 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL 360
Query: 1172 NMTPEK 1189
NMTPE+
Sbjct: 361 NMTPEE 366
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,082,813
Number of extensions: 981771
Number of successful extensions: 2635
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2633
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 293
Effective length of database: 14,835,944
Effective search space: 4346931592
Effective search space used: 4346931592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008242
(1195 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 569 e-159
Sscrofa_Chr04 351 6e-94
Sscrofa_Chr13 64 2e-07
>Sscrofa_Chr15
|| Length = 157681621
Score = 569 bits (287), Expect = e-159
Identities = 505/576 (87%), Gaps = 5/576 (0%)
Strand = Plus / Minus
Query: 535 agaatatctttacttctttagagtattggttccagcaacggatagaaatgctttgagttc 594
||||||| || || |||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 30508951 agaatatgttcacatctttagagtgttggttccagcaacagatagaaatgctttgagatc 30508892
Query: 595 actctggggaaaactggcctctgaaatcttaatgcaaaattgggatgcagccatggaaga 654
|||||||||||||||||| ||||||||||||||||| |||| || ||||||||| |||||
Sbjct: 30508891 actctggggaaaactggcttctgaaatcttaatgcagaattaggttgcagccatagaaga 30508832
Query: 655 ccttacccgactaaaagagaccatagataataattctgtgagttctccacttcagtctct 714
||||| || |||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct: 30508831 ccttaaccaactaaaagagaccacaaataataattctgtaagttctccacttcagtctct 30508772
Query: 715 tcagcagcgaacatggctcattcactggtctctgtttgttttcttcaatcaccccaaagg 774
|||||| |||||||||| |||||| ||||||||| ||||||||| ||||| ||||||
Sbjct: 30508771 tcagcaatgaacatggcttattcacccatctctgttttttttcttcagtcacctcaaagg 30508712
Query: 775 acgtgataacattatcgatctcttcctttaccagccacagtatctgaatgcaattcaaac 834
| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 30508711 atgtgatggcattattaatctcttcctttaccagccatagtatctgaatgcaattcagat 30508652
Query: 835 gatgtgtccacacatactccgctatttgaccacagcagtcataacaaacaaagatgttcg 894
||| ||| |||| |||| ||||||||||||||| |||||| || ||||||||| |
Sbjct: 30508651 gatatgttcacatgcactctgctatttgaccacaggagtcat----aataaagatgtttg 30508596
Query: 895 aaaacgccggcaggtactaaaagatctggtcaaagttattcaacaggagtcttacacata 954
|||| || || |||| || ||||||||||||||| | || |||||| | |||||||||||
Sbjct: 30508595 aaaatgctggtaggtgctgaaagatctggtcaaaatgatccaacagaaatcttacacata 30508536
Query: 955 taaagacccaattacagagtttgttgaatgcttgtatgttaattttgactttgatggggc 1014
|| | |||| ||||||||||||||||||||||| | ||||||| ||||| ||||||||||
Sbjct: 30508535 tagaaacccgattacagagtttgttgaatgcttatgtgttaatcttgacattgatggggc 30508476
Query: 1015 tcagaaaaagctgagggaatgtgaatcagtgctagtgaatgatttctttttggtggcttg 1074
||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 30508475 tcagaaaaaactgagggaatgtgaacaagtgctagtggatgatttctttttggtggctta 30508416
Query: 1075 tcttgaggatttcattg-aaaatgctcgtcttttca 1109
||||||||| ||||||| ||||||||| ||||||||
Sbjct: 30508415 tcttgaggacttcattgaaaaatgctcatcttttca 30508380
Score = 561 bits (283), Expect = e-157
Identities = 504/576 (87%), Gaps = 5/576 (0%)
Strand = Plus / Plus
Query: 535 agaatatctttacttctttagagtattggttccagcaacggatagaaatgctttgagttc 594
||||||| || || |||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 30887174 agaatatgttcacatctttagagtgttggttccagcaacagatagaaatgctttgagatc 30887233
Query: 595 actctggggaaaactggcctctgaaatcttaatgcaaaattgggatgcagccatggaaga 654
|||||||||||||||||| ||||||||||||||||| |||| || ||||||||| |||||
Sbjct: 30887234 actctggggaaaactggcttctgaaatcttaatgcagaattaggttgcagccatagaaga 30887293
Query: 655 ccttacccgactaaaagagaccatagataataattctgtgagttctccacttcagtctct 714
||||| || |||||||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct: 30887294 ccttaaccaactaaaagagaccataaataataattctgtaagttatccacttcagtctct 30887353
Query: 715 tcagcagcgaacatggctcattcactggtctctgtttgttttcttcaatcaccccaaagg 774
|||||| |||||||||| |||||| ||||||||| ||||||||| ||||| ||||||
Sbjct: 30887354 tcagcaatgaacatggcttattcacccatctctgttttttttcttcagtcacctcaaagg 30887413
Query: 775 acgtgataacattatcgatctcttcctttaccagccacagtatctgaatgcaattcaaac 834
| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 30887414 atgtgatggcattattaatctcttcctttaccagccatagtatctgaatgcaattcagat 30887473
Query: 835 gatgtgtccacacatactccgctatttgaccacagcagtcataacaaacaaagatgttcg 894
||| ||| | || |||| ||||||||||||||| |||||| || ||||||||| |
Sbjct: 30887474 gatatgttctcatgcactctgctatttgaccacaggagtcat----aataaagatgtttg 30887529
Query: 895 aaaacgccggcaggtactaaaagatctggtcaaagttattcaacaggagtcttacacata 954
|||| || || |||| || ||||||||||||||| | || |||||| | |||||||||||
Sbjct: 30887530 aaaatgctggtaggtgctgaaagatctggtcaaaatgatccaacagaaatcttacacata 30887589
Query: 955 taaagacccaattacagagtttgttgaatgcttgtatgttaattttgactttgatggggc 1014
|| | |||| ||||||||||||||||||||||| | ||||||| ||||| ||||||||||
Sbjct: 30887590 tagaaacccgattacagagtttgttgaatgcttatgtgttaatcttgacattgatggggc 30887649
Query: 1015 tcagaaaaagctgagggaatgtgaatcagtgctagtgaatgatttctttttggtggcttg 1074
||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 30887650 tcagaaaaaactgagggaatgtgaacaagtgctagtggatgatttctttttggtggctta 30887709
Query: 1075 tcttgaggatttcattg-aaaatgctcgtcttttca 1109
||||||||| ||||||| ||||||||| ||||||||
Sbjct: 30887710 tcttgaggacttcattgaaaaatgctcatcttttca 30887745
Score = 448 bits (226), Expect = e-123
Identities = 381/431 (88%), Gaps = 10/431 (2%)
Strand = Plus / Minus
Query: 125 cactttttggatcggcatctagtctttccgttgcttgagtttctctccgtaaaggagata 184
|||||||||| | ||||||||| |||||| ||||| |||||||||| || |||||||||
Sbjct: 30510150 cactttttgggttggcatctagcctttccactgcttaagtttctctctgtcaaggagata 30510091
Query: 185 tataatgaaaaagaattattacaagggaaattggatcttcttagtgataccaacatggtg 244
||| |||||||| ||| |||||||||||||| |||||||||||||| | | ||
Sbjct: 30510090 tatgatgaaaaa--attcttacaagggaaattagatcttcttagtgaaa-------gatg 30510040
Query: 245 gattttgctatggatgtatacaaaaacctttattctgatgatattcctcatgctttgaga 304
|| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 30510039 gactttgctatgggtgtatacaaaaacctttattctgatgatatttctcatgctttgaga 30509980
Query: 305 gaaaaaaggac-cactgttgttgcacaactgaaacagctacaggcagaaacagaaccaat 363
||||||| || | || ||||||||||||||||||||| || |||||||| |||| |||
Sbjct: 30509979 gaaaaaaagaatcgctattgttgcacaactgaaacagcaactggcagaaatggaactaat 30509920
Query: 364 tgtgaagatgttcgaagatccagaaactaccaggcaaatgcaatcaaccagggatggtcg 423
|||||||||| | ||||||||||||||||| ||||||||| || |||||||||||||| |
Sbjct: 30509919 tgtgaagatgcttgaagatccagaaactactaggcaaatgaaaccaaccagggatggttg 30509860
Query: 424 gatgctgtttgattatctggcagacaagcatggttttaggcaggaatatttagatacact 483
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30509859 gatgctgtttgattacctggcagacaagcatggttttaggcaggaatatttagatacact 30509800
Query: 484 ctataggtatgcaaaattccagtatgaatgtggaaattactctggagcagcagaatatct 543
||| ||||||| ||||||| |||| | |||||||||||| ||||||||||||||||||||
Sbjct: 30509799 ctacaggtatgtaaaattctagtacgcatgtggaaattattctggagcagcagaatatct 30509740
Query: 544 ttacttcttta 554
| || ||||||
Sbjct: 30509739 tcacatcttta 30509729
Score = 448 bits (226), Expect = e-123
Identities = 381/431 (88%), Gaps = 10/431 (2%)
Strand = Plus / Plus
Query: 125 cactttttggatcggcatctagtctttccgttgcttgagtttctctccgtaaaggagata 184
|||||||||| | ||||||||| |||||| ||||| |||||||||| || |||||||||
Sbjct: 30885975 cactttttgggttggcatctagcctttccactgcttaagtttctctctgtcaaggagata 30886034
Query: 185 tataatgaaaaagaattattacaagggaaattggatcttcttagtgataccaacatggtg 244
||| |||||||| ||| |||||||||||||| |||||||||||||| | | ||
Sbjct: 30886035 tatgatgaaaaa--attcttacaagggaaattagatcttcttagtgaaa-------gatg 30886085
Query: 245 gattttgctatggatgtatacaaaaacctttattctgatgatattcctcatgctttgaga 304
|| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 30886086 gactttgctatgggtgtatacaaaaacctttattctgatgatatttctcatgctttgaga 30886145
Query: 305 gaaaaaaggac-cactgttgttgcacaactgaaacagctacaggcagaaacagaaccaat 363
||||||| || | || |||||||||||||||||||||||| |||||||| |||| |||
Sbjct: 30886146 gaaaaaaagaatcgctattgttgcacaactgaaacagctactggcagaaatggaactaat 30886205
Query: 364 tgtgaagatgttcgaagatccagaaactaccaggcaaatgcaatcaaccagggatggtcg 423
|||||||||| | ||||||||||||||||| ||||||||| || |||||||||||||| |
Sbjct: 30886206 tgtgaagatgcttgaagatccagaaactactaggcaaatgaaaccaaccagggatggttg 30886265
Query: 424 gatgctgtttgattatctggcagacaagcatggttttaggcaggaatatttagatacact 483
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 30886266 gatgctgtttgattacctggcagacaagcatggttttgggcaggaatatttagatacact 30886325
Query: 484 ctataggtatgcaaaattccagtatgaatgtggaaattactctggagcagcagaatatct 543
||| ||||||| ||||||| |||| | |||||||||||| ||||||||||||||||||||
Sbjct: 30886326 ctacaggtatgtaaaattctagtacgcatgtggaaattattctggagcagcagaatatct 30886385
Query: 544 ttacttcttta 554
| || ||||||
Sbjct: 30886386 tcacatcttta 30886396
>Sscrofa_Chr04
|| Length = 143465943
Score = 351 bits (177), Expect = 6e-94
Identities = 180/181 (99%)
Strand = Plus / Plus
Query: 1 gtgcatttgcgcagttcggggcttgtctgttcgtttgtcggcgctatcaataaagtttta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 31682152 gtgcatttgcgcagttcggggcttgtctgttcgtttgtcggcgctatcaataaagtttaa 31682211
Query: 61 gcgagggcacactttcttttttcttgccaagatggccgagtacgacttgactactcgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31682212 gcgagggcacactttcttttttcttgccaagatggccgagtacgacttgactactcgtat 31682271
Query: 121 cgcgcactttttggatcggcatctagtctttccgttgcttgagtttctctccgtaaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31682272 cgcgcactttttggatcggcatctagtctttccgttgcttgagtttctctccgtaaagga 31682331
Query: 181 g 181
|
Sbjct: 31682332 g 31682332
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 689 tctgtgagttctccacttcagtctcttcagcagcgaacatggctcattcactggtctctg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31695841 tctgtgagttctccacttcagtctcttcagcagcgaacatggctcattcactggtctctg 31695900
Query: 749 tttgttttcttcaatcaccccaaaggacgtgataacattatcgatctcttcctttaccag 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31695901 tttgttttcttcaatcaccccaaaggacgtgataacattatcgatctcttcctttaccag 31695960
Query: 809 ccacagta 816
||||||||
Sbjct: 31695961 ccacagta 31695968
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 814 gtatctgaatgcaattcaaacgatgtgtccacacatactccgctatttgaccacagcagt 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31712187 gtatctgaatgcaattcaaacgatgtgtccacacatactccgctatttgaccacagcagt 31712246
Query: 874 cataacaaacaaagatgttcgaaaacgccggcaggtactaaaagatctggtcaaagttat 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31712247 cataacaaacaaagatgttcgaaaacgccggcaggtactaaaagatctggtcaaagttat 31712306
Query: 934 tcaacagg 941
||||||||
Sbjct: 31712307 tcaacagg 31712314
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 562 ggttccagcaacggatagaaatgctttgagttcactctggggaaaactggcctctgaaat 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31694886 ggttccagcaacggatagaaatgctttgagttcactctggggaaaactggcctctgaaat 31694945
Query: 622 cttaatgcaaaattgggatgcagccatggaagaccttacccgactaaaagagaccataga 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31694946 cttaatgcaaaattgggatgcagccatggaagaccttacccgactaaaagagaccataga 31695005
Query: 682 taataat 688
|||||||
Sbjct: 31695006 taataat 31695012
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 296 gctttgagagaaaaaaggaccactgttgttgcacaactgaaacagctacaggcagaaaca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31688032 gctttgagagaaaaaaggaccactgttgttgcacaactgaaacagctacaggcagaaaca 31688091
Query: 356 gaaccaattgtgaagatgttcgaagatccagaaactaccaggcaaatgcaatcaaccagg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31688092 gaaccaattgtgaagatgttcgaagatccagaaactaccaggcaaatgcaatcaaccagg 31688151
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 180 agatatataatgaaaaagaattattacaagggaaattggatcttcttagtgataccaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31686623 agatatataatgaaaaagaattattacaagggaaattggatcttcttagtgataccaaca 31686682
Query: 240 tggtggattttgctatggatgtatacaaaaacctttattctgatgatattcctcatg 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31686683 tggtggattttgctatggatgtatacaaaaacctttattctgatgatattcctcatg 31686739
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 937 acaggagtcttacacatataaagacccaattacagagtttgttgaatgcttgtatgttaa 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31713080 acaggagtcttacacatataaagacccaattacagagtttgttgaatgcttgtatgttaa 31713139
Query: 997 ttttgactttgatggggctcagaaaaagctgagggaatgtgaatcagt 1044
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31713140 ttttgactttgatggggctcagaaaaagctgagggaatgtgaatcagt 31713187
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 458 tttaggcaggaatatttagatacactctataggtatgcaaaattccagtatgaatgtgga 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31689042 tttaggcaggaatatttagatacactctataggtatgcaaaattccagtatgaatgtgga 31689101
Query: 518 aattactctggagcagcagaatatctttacttctttagagtattggt 564
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31689102 aattactctggagcagcagaatatctttacttctttagagtattggt 31689148
Score = 180 bits (91), Expect = 1e-42
Identities = 108/111 (97%), Gaps = 2/111 (1%)
Strand = Plus / Plus
Query: 1043 gtgctagtgaatgatttctttttggtggcttgtcttgaggatttcattgaaaatgctcgt 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31714736 gtgctagtgaatgatttctttttggtggcttgtcttgaggatttcattgaaaatgctcgt 31714795
Query: 1103 cttttcatatttgaagac-ttttgtcgcatccatcaatgtatcagcattaa 1152
||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct: 31714796 cttttcatatttg-agactttttgtcgcatccatcagtgtatcagcattaa 31714845
Score = 61.9 bits (31), Expect = 7e-07
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1148 attaacatgttggcagataaactgaatatgactcc 1182
|||| ||||||||||||||||||||||||||||||
Sbjct: 31729176 attagcatgttggcagataaactgaatatgactcc 31729210
>Sscrofa_Chr13
|| Length = 218635234
Score = 63.9 bits (32), Expect = 2e-07
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 797 ttcctttaccagccacagtatctgaatgcaattcaaacgatgtgtccacaca 848
|||||||||||||||| |||||| ||||||||||| || |||| ||||||||
Sbjct: 130113392 ttcctttaccagccactgtatcttaatgcaattcagactatgtatccacaca 130113341
Score = 63.9 bits (32), Expect = 2e-07
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 797 ttcctttaccagccacagtatctgaatgcaattcaaacgatgtgtccacaca 848
|||||||||||||||| |||||| ||||||||||| || |||| ||||||||
Sbjct: 130184793 ttcctttaccagccactgtatcttaatgcaattcagactatgtatccacaca 130184844
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,356,090
Number of extensions: 254
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 18
Length of query: 1195
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1174
Effective length of database: 2,808,413,156
Effective search space: 3297077045144
Effective search space used: 3297077045144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)