Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008243
(1020 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073818.1| N(6)-adenine-specific DNA methyltransferase ... 309 3e-84
Alignment gi|XP_002692687.1| PREDICTED: n(6)-adenine-specific DNA methylt... 191 7e-49
Alignment gi|XP_601057.2| PREDICTED: n(6)-adenine-specific DNA methyltran... 191 7e-49
Alignment gi|XP_001253148.1| PREDICTED: n(6)-adenine-specific DNA methylt... 95 1e-19
>ref|NP_001073818.1| N(6)-adenine-specific DNA methyltransferase 2 [Bos taurus].
Length = 226
Score = 309 bits (791), Expect = 3e-84
Identities = 152/227 (66%), Positives = 179/227 (78%), Gaps = 1/227 (0%)
Frame = +2
Query: 185 MSDSEDEGTPQLSSHALAALQEFYAEQRQR-ADSGAHDKYDLGVIEENWQLSQFWYNQET 361
MSDSE+EG PQLSS+ALAALQEFYAEQ+ +D DKY++G+IEENWQLSQFWY+ ET
Sbjct: 1 MSDSENEGPPQLSSYALAALQEFYAEQQHHHSDLCGDDKYNIGIIEENWQLSQFWYSPET 60
Query: 362 XXXXXXXXXXXXGDGGRIACVSAPSVYRTLRRLHRARCSACLFEHDRRFAGLGEEFVFYD 541
G+GGRIACVSAPSVY+ LR HR S C+FE+DRRFA GE+FV+YD
Sbjct: 61 ATCLAEDAVAAAGEGGRIACVSAPSVYQKLRERHRDDVSVCIFEYDRRFAIYGEDFVYYD 120
Query: 542 YRRPLDFPPGVEAHSFDLVIADPPYLSQECLRKTAQTIQYLTRGKILLCTGAVMEEEAAK 721
Y+ P+D P + HSFD+V+ADPPYLS+ECLRK ++TI+ LTRGKILLCTGAVME+ AAK
Sbjct: 121 YKNPVDLPERIATHSFDIVVADPPYLSEECLRKMSETIKLLTRGKILLCTGAVMEDAAAK 180
Query: 722 LLGVKMCKFIPEHTRTLGNEFRCYVNYASGLDREL*VRGPPGCSQGP 862
LLGVKMCKFIPEHTRTLGNEFRC+VNY SGLD L V+ P +GP
Sbjct: 181 LLGVKMCKFIPEHTRTLGNEFRCFVNYNSGLDCNLSVQLP--VQEGP 225
>ref|XP_002692687.1| PREDICTED: n(6)-adenine-specific DNA methyltransferase 2-like [Bos
taurus].
Length = 180
Score = 191 bits (486), Expect = 7e-49
Identities = 97/148 (65%), Positives = 117/148 (79%), Gaps = 1/148 (0%)
Frame = +2
Query: 422 VSAPSVYRTLRRLHRARCSACLFEHDRRFAGLGEEFVFYDYRRPLDFPPGVEAHSFDLVI 601
VSAPSVY+ LR HR S +F+++ RFA GE+FV+YDYR P++ P + HSFD+V
Sbjct: 34 VSAPSVYQKLRERHRDDVSVRIFQYNHRFAIYGEDFVYYDYRNPVNLPERIATHSFDIVG 93
Query: 602 ADPPYLSQECLRKTAQTIQYLTRGKILLCTGAVMEEEAAKLLGVKMCKFIPEH-TRTLGN 778
AD YLS+ECLRK ++TI+ LTRGKILLCTGAVMEE AAKLLGVKMCKFIP+H TRTLGN
Sbjct: 94 ADTLYLSEECLRKMSETIKLLTRGKILLCTGAVMEEAAAKLLGVKMCKFIPQHTTRTLGN 153
Query: 779 EFRCYVNYASGLDREL*VRGPPGCSQGP 862
EFRC+VNY SGLDR+L V+ P +GP
Sbjct: 154 EFRCFVNYDSGLDRDLSVQLP--VQEGP 179
>ref|XP_601057.2| PREDICTED: n(6)-adenine-specific DNA methyltransferase 2-like [Bos
taurus].
Length = 180
Score = 191 bits (486), Expect = 7e-49
Identities = 97/148 (65%), Positives = 117/148 (79%), Gaps = 1/148 (0%)
Frame = +2
Query: 422 VSAPSVYRTLRRLHRARCSACLFEHDRRFAGLGEEFVFYDYRRPLDFPPGVEAHSFDLVI 601
VSAPSVY+ LR HR S +F+++ RFA GE+FV+YDYR P++ P + HSFD+V
Sbjct: 34 VSAPSVYQKLRERHRDDVSVRIFQYNHRFAIYGEDFVYYDYRNPVNLPERIATHSFDIVG 93
Query: 602 ADPPYLSQECLRKTAQTIQYLTRGKILLCTGAVMEEEAAKLLGVKMCKFIPEH-TRTLGN 778
AD YLS+ECLRK ++TI+ LTRGKILLCTGAVMEE AAKLLGVKMCKFIP+H TRTLGN
Sbjct: 94 ADTLYLSEECLRKMSETIKLLTRGKILLCTGAVMEEAAAKLLGVKMCKFIPQHTTRTLGN 153
Query: 779 EFRCYVNYASGLDREL*VRGPPGCSQGP 862
EFRC+VNY SGLDR+L V+ P +GP
Sbjct: 154 EFRCFVNYDSGLDRDLSVQLP--VQEGP 179
>ref|XP_001253148.1| PREDICTED: n(6)-adenine-specific DNA methyltransferase 2-like [Bos
taurus].
Length = 77
Score = 94.7 bits (234), Expect = 1e-19
Identities = 47/77 (61%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Frame = +2
Query: 185 MSDSEDEGTPQLSSHALAALQEFYAEQRQR-ADSGAHDKYDLGVIEENWQLSQFWYNQET 361
MSDSE+EG PQLSS+ALAALQEFYAEQ+ +D DKY++G+IEENWQLSQFWY+ ET
Sbjct: 1 MSDSENEGPPQLSSYALAALQEFYAEQQHHHSDLCGDDKYNIGIIEENWQLSQFWYSPET 60
Query: 362 XXXXXXXXXXXXGDGGR 412
G+GGR
Sbjct: 61 ATCLAEDAVAAAGEGGR 77
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,813,053
Number of extensions: 1196529
Number of successful extensions: 6870
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6559
Number of HSP's successfully gapped: 4
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008243
(1020 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543173.1| PREDICTED: similar to M142.8 [Canis familiaris]. 320 1e-87
>ref|XP_543173.1| PREDICTED: similar to M142.8 [Canis familiaris].
Length = 214
Score = 320 bits (821), Expect = 1e-87
Identities = 152/214 (71%), Positives = 177/214 (82%)
Frame = +2
Query: 185 MSDSEDEGTPQLSSHALAALQEFYAEQRQRADSGAHDKYDLGVIEENWQLSQFWYNQETX 364
MSDS+D+ P+LSSH LAALQEFYAEQ+Q++D G DKY++G+IEENWQLSQFWY+QET
Sbjct: 1 MSDSDDDDIPRLSSHTLAALQEFYAEQKQQSDPGRDDKYNIGIIEENWQLSQFWYSQETA 60
Query: 365 XXXXXXXXXXXGDGGRIACVSAPSVYRTLRRLHRARCSACLFEHDRRFAGLGEEFVFYDY 544
G+ GRIACVS PSVY+ LR LHR S +FE+D+RFA GEEF+FYDY
Sbjct: 61 LHLAKEAIAAAGEHGRIACVSTPSVYQKLRALHREDFSVYIFEYDKRFAIYGEEFIFYDY 120
Query: 545 RRPLDFPPGVEAHSFDLVIADPPYLSQECLRKTAQTIQYLTRGKILLCTGAVMEEEAAKL 724
PLD P + A SFD+VIADPPYLS+ECLRKT++TI+YLT+GKILLCTGAVMEEEAAKL
Sbjct: 121 NNPLDLPEKIAARSFDIVIADPPYLSKECLRKTSETIKYLTQGKILLCTGAVMEEEAAKL 180
Query: 725 LGVKMCKFIPEHTRTLGNEFRCYVNYASGLDREL 826
LGVKMCKFIP+HTRTLGNEFRCYVNY SGLDRE+
Sbjct: 181 LGVKMCKFIPKHTRTLGNEFRCYVNYDSGLDREI 214
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,263,194
Number of extensions: 1188058
Number of successful extensions: 7553
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7245
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008243
(1020 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,607,134
Number of extensions: 851672
Number of successful extensions: 4656
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4349
Number of HSP's successfully gapped: 0
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008243
(1020 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080802.1| N(6)-adenine-specific DNA methyltransferase 2 [... 307 1e-83
>ref|NP_080802.1| N(6)-adenine-specific DNA methyltransferase 2 [Mus musculus].
Length = 224
Score = 307 bits (786), Expect = 1e-83
Identities = 146/213 (68%), Positives = 171/213 (80%)
Frame = +2
Query: 185 MSDSEDEGTPQLSSHALAALQEFYAEQRQRADSGAHDKYDLGVIEENWQLSQFWYNQETX 364
MS+SED+ PQLSSH LAALQEFYAEQ+Q + DKY++GVIEENWQLSQFWY+Q+T
Sbjct: 11 MSESEDDDIPQLSSHTLAALQEFYAEQKQSVNPRGDDKYNVGVIEENWQLSQFWYSQDTA 70
Query: 365 XXXXXXXXXXXGDGGRIACVSAPSVYRTLRRLHRARCSACLFEHDRRFAGLGEEFVFYDY 544
G+GGRIACVSAPSVY+ LR L R S +FE+DRRFA G+EF+FYDY
Sbjct: 71 LRLAREAIDAAGEGGRIACVSAPSVYQKLRELCREDSSVYIFEYDRRFAIYGDEFIFYDY 130
Query: 545 RRPLDFPPGVEAHSFDLVIADPPYLSQECLRKTAQTIQYLTRGKILLCTGAVMEEEAAKL 724
PL+ P + AHSFDLV+ADPPYLS+ECLRKT++TIQ+LTRGKILLCTGA+MEE+AA+L
Sbjct: 131 NHPLELPERIAAHSFDLVVADPPYLSEECLRKTSETIQFLTRGKILLCTGAIMEEQAAQL 190
Query: 725 LGVKMCKFIPEHTRTLGNEFRCYVNYASGLDRE 823
LGVKMCKFIPEH+R L NEFRCY NY SGLD E
Sbjct: 191 LGVKMCKFIPEHSRNLANEFRCYTNYDSGLDCE 223
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,000,730
Number of extensions: 942905
Number of successful extensions: 5340
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5065
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008243
(1020 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777588.1| N(6)-adenine-specific DNA methyltransferase 2 [... 312 4e-85
>ref|NP_777588.1| N(6)-adenine-specific DNA methyltransferase 2 [Homo sapiens].
Length = 214
Score = 312 bits (799), Expect = 4e-85
Identities = 146/211 (69%), Positives = 172/211 (81%)
Frame = +2
Query: 185 MSDSEDEGTPQLSSHALAALQEFYAEQRQRADSGAHDKYDLGVIEENWQLSQFWYNQETX 364
MSD ED+ TPQLS+HALAALQEFYAEQ+Q+ + G DKY++G+IEENWQLSQFWY+QET
Sbjct: 1 MSDLEDDETPQLSAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETA 60
Query: 365 XXXXXXXXXXXGDGGRIACVSAPSVYRTLRRLHRARCSACLFEHDRRFAGLGEEFVFYDY 544
G+GGRIACVSAPSVY+ LR L R S +FE+D+RFA GEEF+FYDY
Sbjct: 61 LQLAQEAIAAVGEGGRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEFIFYDY 120
Query: 545 RRPLDFPPGVEAHSFDLVIADPPYLSQECLRKTAQTIQYLTRGKILLCTGAVMEEEAAKL 724
PLD P + AHSFD+VIADPPYLS+ECLRKT++T++YLTRGKILLCTGA+MEE+AA+L
Sbjct: 121 NNPLDLPERIAAHSFDIVIADPPYLSEECLRKTSETVKYLTRGKILLCTGAIMEEQAAEL 180
Query: 725 LGVKMCKFIPEHTRTLGNEFRCYVNYASGLD 817
LGVKMC F+P HTR L NEFRCYVNY SGLD
Sbjct: 181 LGVKMCTFVPRHTRNLANEFRCYVNYDSGLD 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,269,411
Number of extensions: 1146599
Number of successful extensions: 6629
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6333
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008243
(1020 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 482 e-133
>Sscrofa_Chr11
|| Length = 87690581
Score = 482 bits (243), Expect = e-133
Identities = 269/275 (97%), Gaps = 2/275 (0%)
Strand = Plus / Minus
Query: 690 caggtgccgtcatggaggaagaggcagcaaagctccttggggtgaagatgtgcaaattca 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193150 caggtgccgtcatggaggaagaggcagcaaagctccttggggtgaagatgtgcaaattca 193091
Query: 750 ttccagaacacacgcgaaccttgggaaacgagtttcgctgttacgtgaattatgcttctg 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193090 ttccagaacacacgcgaaccttgggaaacgagtttcgctgttacgtgaattatgcttctg 193031
Query: 810 ggctggaccgcgaactgtgagtgcgtggtccccccgggtgcagtcagggacccgggtgcc 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193030 ggctggaccgcgaactgtgagtgcgtggtccccccgggtgcagtcagggacccgggtgcc 192971
Query: 870 actcccctctctctgttctcttagtagattgagaagctggggccaacaacacaaacgggg 929
||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct: 192970 actcccctctctctgttctcttagtagattgagaagctggggccaccacaacaaacg-gg 192912
Query: 930 ggctctcccagcccgaattttcggggtaatgaaga 964
||||||||||||||| ||||| |||||||||||||
Sbjct: 192911 ggctctcccagcccg-atttttggggtaatgaaga 192878
Score = 278 bits (140), Expect = 6e-72
Identities = 154/156 (98%), Gaps = 2/156 (1%)
Strand = Plus / Minus
Query: 173 aggtgacagaccatgagcgattccgaagacgagggcaccccccagctttcttcccacgcc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207809 aggtgacagaccatgagcgattccgaagacgagggcaccccccagctttcttcccacgcc 207750
Query: 233 ctagcagccctgcaggaattttatgctgagcagaggcagcgcgctgactccggtgcccac 292
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 207749 ctagcagccctgcaggaa-tttatgctgagcagaggcagcgcgctgactccggtg-ccac 207692
Query: 293 gacaagtacgaccttggcgtcatagaggagaactgg 328
||||||||||||||||||||||||||||||||||||
Sbjct: 207691 gacaagtacgaccttggcgtcatagaggagaactgg 207656
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 328 gcagctgagccagttctggtataatcaggagacagccctgcgcctggcagaggaagctgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203848 gcagctgagccagttctggtataatcaggagacagccctgcgcctggcagaggaagctgt 203789
Query: 388 ggcagcggcaggggacggtggcag 411
||||||||||||||||||||||||
Sbjct: 203788 ggcagcggcaggggacggtggcag 203765
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 97 tctcgtcgcgggctcgtgcgcggggcctcgcttcacagggcgtggtttcccctcacgtca 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220212 tctcgtcgcgggctcgtgcgcggggcctcgcttcacagggcgtggtttcccctcacgtca 220153
Query: 157 gagcttctgaaggaacaggt 176
||||||||||||||||||||
Sbjct: 220152 gagcttctgaaggaacaggt 220133
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Minus
Query: 11 ggactacggcgcacgcgcggacgcgggttgtgaggggccgaggcgccgcctctgcct 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220298 ggactacggcgcacgcgcggacgcgggttgtgaggggccgaggcgccgcctctgcct 220242
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,253,616
Number of extensions: 72
Number of successful extensions: 72
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 5
Length of query: 1020
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 999
Effective length of database: 2,808,413,156
Effective search space: 2805604742844
Effective search space used: 2805604742844
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)