Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008245
(1378 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069345.1| NADP-dependent malic enzyme, mitochondrial [... 772 0.0
Alignment gi|NP_001138325.1| NADP-dependent malic enzyme [Bos taurus]. 549 e-156
Alignment gi|NP_001070282.1| NAD-dependent malic enzyme, mitochondrial [B... 453 e-127
Alignment gi|XP_002683959.1| PREDICTED: predicted protein-like, partial [... 55 2e-07
>ref|NP_001069345.1| NADP-dependent malic enzyme, mitochondrial [Bos taurus].
Length = 604
Score = 772 bits (1993), Expect = 0.0
Identities = 381/414 (92%), Positives = 392/414 (94%)
Frame = +3
Query: 135 MGASLGSGARVALLPRQACGAVXXXXXXXXXXDCHSKTGLPRPVPLKKRGYDVTRNPHLN 314
MGA+LG+GAR+ L +ACGAV CHSK RPVPLKKRGYDVTRNPHLN
Sbjct: 1 MGAALGTGARLTLRSGRACGAVRSWAPPAPARGCHSKARPARPVPLKKRGYDVTRNPHLN 60
Query: 315 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 494
KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLR+MRYYERQQSDLDKYIILMTLQDRNEKL
Sbjct: 61 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRVMRYYERQQSDLDKYIILMTLQDRNEKL 120
Query: 495 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 674
FYRVLTSDVEKF+PIVYTPTVGLACQHYGLTFRRPRGLFIT+HDKGHL TMLNSWPEDDI
Sbjct: 121 FYRVLTSDVEKFLPIVYTPTVGLACQHYGLTFRRPRGLFITVHDKGHLATMLNSWPEDDI 180
Query: 675 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 854
KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD
Sbjct: 181 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 240
Query: 855 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 1034
PLYIGLKHRRVRGQ+YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM
Sbjct: 241 PLYIGLKHRRVRGQEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 300
Query: 1035 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKA 1214
FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKA
Sbjct: 301 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKA 360
Query: 1215 EATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
EATRKIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE++SLEEVVRLV PTAIIGV
Sbjct: 361 EATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGV 414
>ref|NP_001138325.1| NADP-dependent malic enzyme [Bos taurus].
Length = 568
Score = 549 bits (1415), Expect = e-156
Identities = 261/354 (73%), Positives = 310/354 (87%)
Frame = +3
Query: 315 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 494
+ +AFTLEER QL IHGL+PP F+SQDVQ+LR+++ +ER SD D+Y++LM LQDRNEKL
Sbjct: 23 RDLAFTLEERQQLNIHGLLPPSFISQDVQVLRVLKNFERLNSDFDRYLLLMDLQDRNEKL 82
Query: 495 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 674
FY+VL SD+EKFMPIVYTPTVGLACQ Y L FR+PRGLFI+IHD+GH+ ++LN+WPED I
Sbjct: 83 FYKVLMSDIEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDRGHISSVLNAWPEDVI 142
Query: 675 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 854
KA+VVTDGERILGLGDLGC GMGIPVGKLALYTACGG+NP+QCLPV+LDVGT NEELL+D
Sbjct: 143 KAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQQCLPVMLDVGTENEELLKD 202
Query: 855 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 1034
PLYIGL+ RRVRG +YDD LDEFM+AV+ K+G+NCLIQFEDFAN NAFRLL KY+N+YC
Sbjct: 203 PLYIGLRQRRVRGPEYDDFLDEFMEAVSLKYGMNCLIQFEDFANINAFRLLRKYQNQYCT 262
Query: 1035 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKA 1214
FNDDIQGTASVAVAGILAALRITKNKLS +FQGAGEAA+GIAHL+VMA+EK G+ K
Sbjct: 263 FNDDIQGTASVAVAGILAALRITKNKLSEQTVLFQGAGEAALGIAHLIVMAMEKEGLSKE 322
Query: 1215 EATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
+A KIW+VDS+GLIVKGR+ L E E FA +H EM +LE +V+ + PTA+IGV
Sbjct: 323 QAIEKIWLVDSKGLIVKGRAALTQEIEEFAHEHKEMKNLEAIVQDIKPTALIGV 376
>ref|NP_001070282.1| NAD-dependent malic enzyme, mitochondrial [Bos taurus].
Length = 584
Score = 453 bits (1166), Expect = e-127
Identities = 220/376 (58%), Positives = 284/376 (75%), Gaps = 3/376 (0%)
Frame = +3
Query: 258 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 437
R + K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 17 RHLHTKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKLN 76
Query: 438 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 617
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 77 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 136
Query: 618 IHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 797
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 137 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 196
Query: 798 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFED 977
+CLPV +DVGT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 197 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGQNTLIQFED 256
Query: 978 FANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAA 1157
F N NAFR L KYR KYC FNDDIQGTA+VA+AG+LAA ++ +S+H +F GAGEAA
Sbjct: 257 FGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVIGKPISDHRILFLGAGEAA 316
Query: 1158 MGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGR-SHLNHEKEMFAQDHPEM--SS 1328
+GIA+L+VMA+ + G+ + EA +KIWMVD GL+ KGR + + +E FA PE +
Sbjct: 317 LGIANLIVMAMVENGLSEEEARKKIWMVDKFGLLFKGRKAKIESHQEAFAHSAPESLPDT 376
Query: 1329 LEEVVRLVNPTAIIGV 1376
EE V ++ P+AIIGV
Sbjct: 377 FEEAVNILKPSAIIGV 392
>ref|XP_002683959.1| PREDICTED: predicted protein-like, partial [Bos taurus].
Length = 341
Score = 54.7 bits (130), Expect = 2e-07
Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 4/211 (1%)
Frame = +3
Query: 684 VVTDGERILGLGDLG-CYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPL 860
V++DG ILGLG+LG + GK L+ G++ + D+ ++E
Sbjct: 37 VISDGTAILGLGNLGPLASKPVMEGKGVLFKRFAGID-------VFDIEVDSES------ 83
Query: 861 YIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYC--- 1031
+ ++ ++ FG I ED F + + + C
Sbjct: 84 --------------PQAFIDTVKRISITFGG---INLEDIKAPECFEI-ERALIEQCDIP 125
Query: 1032 MFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPK 1211
+F+DD GTA V AG++ AL I L V GAG AA+ LLV K
Sbjct: 126 VFHDDQHGTAIVTAAGMINALEIAGKTLPEAKIVCLGAGAAAISCMKLLVSMGAK----- 180
Query: 1212 AEATRKIWMVDSRGLIVKGRSHLNHEKEMFA 1304
I+MVD G+I GR LN K +FA
Sbjct: 181 ---IENIFMVDRTGVIHSGRDDLNQYKAVFA 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,089,677
Number of extensions: 1546823
Number of successful extensions: 8078
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7979
Number of HSP's successfully gapped: 4
Length of query: 459
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 353
Effective length of database: 14,174,046
Effective search space: 5003438238
Effective search space used: 5003438238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008245
(1378 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848770.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 758 0.0
Alignment gi|XP_857177.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 687 0.0
Alignment gi|XP_857051.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 687 0.0
Alignment gi|XP_857135.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 683 0.0
Alignment gi|XP_542269.2| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 674 0.0
Alignment gi|XP_857227.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 671 0.0
Alignment gi|XP_532217.2| PREDICTED: similar to NADP-dependent malic enzy... 554 e-158
Alignment gi|XP_849530.1| PREDICTED: similar to NAD-dependent malic enzym... 452 e-127
Alignment gi|XP_533402.2| PREDICTED: similar to NAD-dependent malic enzym... 390 e-108
Alignment gi|XP_857091.1| PREDICTED: similar to NADP-dependent malic enzy... 74 3e-13
>ref|XP_848770.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 2 [Canis familiaris].
Length = 604
Score = 758 bits (1958), Expect = 0.0
Identities = 378/414 (91%), Positives = 388/414 (93%)
Frame = +3
Query: 135 MGASLGSGARVALLPRQACGAVXXXXXXXXXXDCHSKTGLPRPVPLKKRGYDVTRNPHLN 314
MGA+LG GAR LL +A GAV C S+ G RPVPLKKRGYDVTRNPHLN
Sbjct: 1 MGAALGRGARPGLLRGKAWGAVPRWTPSAPGRGCRSRAGPARPVPLKKRGYDVTRNPHLN 60
Query: 315 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 494
KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL
Sbjct: 61 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 120
Query: 495 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 674
FYRVLTSDVEKFMPIVYTPTVGLACQ YGLTFRRPRGLFITIHDKGHL TMLNSWPEDDI
Sbjct: 121 FYRVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDI 180
Query: 675 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 854
KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGV+P+QCLPVLLDVGTNNEELLRD
Sbjct: 181 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRD 240
Query: 855 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 1034
PLYIGLKH+RVRG++YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM
Sbjct: 241 PLYIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 300
Query: 1035 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKA 1214
FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKA
Sbjct: 301 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKA 360
Query: 1215 EATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
EATRKIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE+ SLEEVVRLV PTAIIGV
Sbjct: 361 EATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIGV 414
>ref|XP_857177.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 6 [Canis familiaris].
Length = 513
Score = 687 bits (1772), Expect = 0.0
Identities = 339/351 (96%), Positives = 346/351 (98%)
Frame = +3
Query: 321 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 500
MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 501 RVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKA 680
RVLTSDVEKFMPIVYTPTVGLACQ YGLTFRRPRGLFITIHDKGHL TMLNSWPEDDIKA
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKA 120
Query: 681 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPL 860
VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGV+P+QCLPVLLDVGTNNEELLRDPL
Sbjct: 121 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPL 180
Query: 861 YIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 1040
YIGLKH+RVRG++YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN
Sbjct: 181 YIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 240
Query: 1041 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKAEA 1220
DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKAEA
Sbjct: 241 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKAEA 300
Query: 1221 TRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIG 1373
TRKIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE+ SLEEVVRLV PTAIIG
Sbjct: 301 TRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIG 351
>ref|XP_857051.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 3 [Canis familiaris].
Length = 361
Score = 687 bits (1772), Expect = 0.0
Identities = 339/351 (96%), Positives = 346/351 (98%)
Frame = +3
Query: 321 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 500
MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 501 RVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKA 680
RVLTSDVEKFMPIVYTPTVGLACQ YGLTFRRPRGLFITIHDKGHL TMLNSWPEDDIKA
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKA 120
Query: 681 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPL 860
VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGV+P+QCLPVLLDVGTNNEELLRDPL
Sbjct: 121 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPL 180
Query: 861 YIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 1040
YIGLKH+RVRG++YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN
Sbjct: 181 YIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 240
Query: 1041 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKAEA 1220
DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKAEA
Sbjct: 241 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKAEA 300
Query: 1221 TRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIG 1373
TRKIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE+ SLEEVVRLV PTAIIG
Sbjct: 301 TRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIG 351
>ref|XP_857135.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 5 [Canis familiaris].
Length = 573
Score = 683 bits (1762), Expect = 0.0
Identities = 340/355 (95%), Positives = 347/355 (97%), Gaps = 3/355 (0%)
Frame = +3
Query: 321 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 500
MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 501 RVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKA 680
RVLTSDVEKFMPIVYTPTVGLACQ YGLTFRRPRGLFITIHDKGHL TMLNSWPEDDIKA
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKA 120
Query: 681 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPL 860
VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGV+P+QCLPVLLDVGTNNEELLRDPL
Sbjct: 121 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPL 180
Query: 861 YIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 1040
YIGLKH+RVRG++YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN
Sbjct: 181 YIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 240
Query: 1041 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKAEA 1220
DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKAEA
Sbjct: 241 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKAEA 300
Query: 1221 TRKIWMVDSRGLIVK---GRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
TRKIWMVDS+GLIVK GRSHLNHEKEMFAQDHPE+ SLEEVVRLV PTAIIGV
Sbjct: 301 TRKIWMVDSKGLIVKVLSGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIGV 355
>ref|XP_542269.2| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 1 [Canis familiaris].
Length = 569
Score = 674 bits (1738), Expect = 0.0
Identities = 340/379 (89%), Positives = 347/379 (91%), Gaps = 27/379 (7%)
Frame = +3
Query: 321 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 500
MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 501 RVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPR-------------------------- 602
RVLTSDVEKFMPIVYTPTVGLACQ YGLTFRRPR
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRSAKEGLRGESHYGVDSLSSEGLSCSA 120
Query: 603 -GLFITIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTAC 779
GLFITIHDKGHL TMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTAC
Sbjct: 121 RGLFITIHDKGHLATMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTAC 180
Query: 780 GGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINC 959
GGV+P+QCLPVLLDVGTNNEELLRDPLYIGLKH+RVRG++YDDLLDEFMQAVTDKFGINC
Sbjct: 181 GGVSPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINC 240
Query: 960 LIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQ 1139
LIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQ
Sbjct: 241 LIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQ 300
Query: 1140 GAGEAAMGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPE 1319
GAGEAAMGIAHLLVMALEK GVPKAEATRKIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE
Sbjct: 301 GAGEAAMGIAHLLVMALEKEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPE 360
Query: 1320 MSSLEEVVRLVNPTAIIGV 1376
+ SLEEVVRLV PTAIIGV
Sbjct: 361 VKSLEEVVRLVKPTAIIGV 379
>ref|XP_857227.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 7 [Canis familiaris].
Length = 562
Score = 671 bits (1730), Expect = 0.0
Identities = 337/372 (90%), Positives = 345/372 (92%), Gaps = 20/372 (5%)
Frame = +3
Query: 321 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 500
MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY
Sbjct: 1 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 60
Query: 501 RVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKA 680
RVLTSDVEKFMPIVYTPTVGLACQ YGLTFRRPRGLFITIHDKGHL TMLNSWPEDDIKA
Sbjct: 61 RVLTSDVEKFMPIVYTPTVGLACQQYGLTFRRPRGLFITIHDKGHLATMLNSWPEDDIKA 120
Query: 681 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPL 860
VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGV+P+QCLPVLLDVGTNNEELLRDPL
Sbjct: 121 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVSPQQCLPVLLDVGTNNEELLRDPL 180
Query: 861 YIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 1040
YIGLKH+RVRG++YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN
Sbjct: 181 YIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 240
Query: 1041 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKAEA 1220
DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKAEA
Sbjct: 241 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKAEA 300
Query: 1221 TRKIWMVDSRGLIVK--------------------GRSHLNHEKEMFAQDHPEMSSLEEV 1340
TRKIWMVDS+GLIVK + HLNHEKEMFAQDHPE+ SLEEV
Sbjct: 301 TRKIWMVDSKGLIVKVLSSSYQCLACNECVIMPADPKDHLNHEKEMFAQDHPEVKSLEEV 360
Query: 1341 VRLVNPTAIIGV 1376
VRLV PTAIIGV
Sbjct: 361 VRLVKPTAIIGV 372
>ref|XP_532217.2| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) [Canis familiaris].
Length = 634
Score = 554 bits (1428), Expect = e-158
Identities = 261/352 (74%), Positives = 311/352 (88%)
Frame = +3
Query: 321 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 500
+AFTLEER QL IHGL+PPCF+SQD+Q+LRI++ +ER SD D+Y++LM LQDRNEKLFY
Sbjct: 90 LAFTLEERQQLNIHGLLPPCFISQDIQVLRIIKNFERLTSDFDRYLLLMDLQDRNEKLFY 149
Query: 501 RVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKA 680
VL SD+EKFMPIVYTPTVGLACQ Y L FR+PRGLFI+IHD+GH+ ++LN+WPED IKA
Sbjct: 150 SVLMSDLEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDRGHIASVLNAWPEDVIKA 209
Query: 681 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPL 860
+VVTDGERILGLGDLGC GMGIPVGKLALYTACGG+NP++CLPV+LDVGT NE LL+DPL
Sbjct: 210 IVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEALLKDPL 269
Query: 861 YIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 1040
YIGL+ RRVRG +YDD LDEFM+AV+ K+G+NCLIQFEDFAN NAFRLL KY+N+YC FN
Sbjct: 270 YIGLRQRRVRGPEYDDFLDEFMEAVSSKYGMNCLIQFEDFANINAFRLLKKYQNRYCTFN 329
Query: 1041 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKAEA 1220
DDIQGTASVAVAGILAALRITKNKLS+ +FQGAGEAA+GIAHL+VMA+EK G+PK +A
Sbjct: 330 DDIQGTASVAVAGILAALRITKNKLSDQKILFQGAGEAALGIAHLIVMAMEKEGLPKEKA 389
Query: 1221 TRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
+ IW+VDS+GLIVKGR+ L EKE FA +H EM +LE +V+ + PTA+IGV
Sbjct: 390 MKNIWLVDSKGLIVKGRAALTQEKEQFAHEHEEMKNLEAIVQEIKPTALIGV 441
>ref|XP_849530.1| PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial
precursor (NAD-ME) (Malic enzyme 2) isoform 2 [Canis
familiaris].
Length = 584
Score = 452 bits (1163), Expect = e-127
Identities = 217/376 (57%), Positives = 284/376 (75%), Gaps = 3/376 (0%)
Frame = +3
Query: 258 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 437
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR + ++
Sbjct: 17 RHIHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHKNVKKMN 76
Query: 438 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 617
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 77 GPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 136
Query: 618 IHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 797
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 137 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 196
Query: 798 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFED 977
+CLPV +DVGT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 197 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGQNTLIQFED 256
Query: 978 FANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAA 1157
F N NAFR L KYR KYC FNDDIQGTA+VA+AG+LAA ++ S H +F GAGEAA
Sbjct: 257 FGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVIGKSFSEHKILFLGAGEAA 316
Query: 1158 MGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGR-SHLNHEKEMFAQDHPEM--SS 1328
+GIA+L+VMA+ + G+ + EA +KIWMVD GL+ KGR + + + +E FA P + +
Sbjct: 317 LGIANLIVMAMVENGLSEEEAQKKIWMVDKFGLLFKGRKAKIENHQEPFAHSAPGIIPDT 376
Query: 1329 LEEVVRLVNPTAIIGV 1376
E+ V ++ P+AIIGV
Sbjct: 377 FEDAVNILRPSAIIGV 392
>ref|XP_533402.2| PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial
precursor (NAD-ME) (Malic enzyme 2) isoform 1 [Canis
familiaris].
Length = 499
Score = 390 bits (1003), Expect = e-108
Identities = 187/307 (60%), Positives = 239/307 (77%), Gaps = 3/307 (0%)
Frame = +3
Query: 465 MTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPT 644
M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+I D+GH+ +
Sbjct: 1 MGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRS 60
Query: 645 MLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDV 824
++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P +CLPV +DV
Sbjct: 61 IVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCIDV 120
Query: 825 GTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRL 1004
GT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFEDF N NAFR
Sbjct: 121 GTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGQNTLIQFEDFGNHNAFRF 180
Query: 1005 LNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVM 1184
L KYR KYC FNDDIQGTA+VA+AG+LAA ++ S H +F GAGEAA+GIA+L+VM
Sbjct: 181 LRKYREKYCTFNDDIQGTAAVALAGLLAAQKVIGKSFSEHKILFLGAGEAALGIANLIVM 240
Query: 1185 ALEKGGVPKAEATRKIWMVDSRGLIVKGR-SHLNHEKEMFAQDHPEM--SSLEEVVRLVN 1355
A+ + G+ + EA +KIWMVD GL+ KGR + + + +E FA P + + E+ V ++
Sbjct: 241 AMVENGLSEEEAQKKIWMVDKFGLLFKGRKAKIENHQEPFAHSAPGIIPDTFEDAVNILR 300
Query: 1356 PTAIIGV 1376
P+AIIGV
Sbjct: 301 PSAIIGV 307
>ref|XP_857091.1| PREDICTED: similar to NADP-dependent malic enzyme, mitochondrial
precursor (NADP-ME) (Malic enzyme 3) isoform 4 [Canis
familiaris].
Length = 231
Score = 74.3 bits (181), Expect = 3e-13
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = +3
Query: 1263 KGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
KGRSHLNHEKEMFAQDHPE+ SLEEVVRLV PTAIIGV
Sbjct: 4 KGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIGV 41
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,394,711
Number of extensions: 1600375
Number of successful extensions: 7922
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7818
Number of HSP's successfully gapped: 10
Length of query: 459
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 353
Effective length of database: 15,340,888
Effective search space: 5415333464
Effective search space used: 5415333464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008245
(1378 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129776.2| PREDICTED: LOW QUALITY PROTEIN: NADP-depende... 790 0.0
Alignment gi|XP_001924368.2| PREDICTED: NADP-dependent malic enzyme [Sus ... 588 e-168
Alignment gi|XP_003121491.2| PREDICTED: NAD-dependent malic enzyme, mitoc... 441 e-124
>ref|XP_003129776.2| PREDICTED: LOW QUALITY PROTEIN: NADP-dependent malic enzyme,
mitochondrial [Sus scrofa].
Length = 613
Score = 790 bits (2041), Expect = 0.0
Identities = 396/423 (93%), Positives = 398/423 (94%), Gaps = 9/423 (2%)
Frame = +3
Query: 135 MGASLGSGARVALLPRQACGAVXXXXXXXXXXDCHSKTGLPRPVPLKKRGYDVTRNPHLN 314
MGASLGSGARVALLPRQACGAV CHSKTGLPRPVPLKKRGYDVTRNPHLN
Sbjct: 1 MGASLGSGARVALLPRQACGAVRRWAPPAPARGCHSKTGLPRPVPLKKRGYDVTRNPHLN 60
Query: 315 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 494
KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL
Sbjct: 61 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 120
Query: 495 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 674
FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI
Sbjct: 121 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 180
Query: 675 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 854
KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD
Sbjct: 181 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 240
Query: 855 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 1034
PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM
Sbjct: 241 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 300
Query: 1035 FNDDI---------QGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMA 1187
FNDDI QGTASV AGI AALRITK+KLSNHVFVFQGAGEAAMGIAHLLVMA
Sbjct: 301 FNDDIQGXCQSTVLQGTASVDAAGIQAALRITKDKLSNHVFVFQGAGEAAMGIAHLLVMA 360
Query: 1188 LEKGGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAI 1367
LEK GVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPE+SSLEEVVRLV PTAI
Sbjct: 361 LEKEGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEVSSLEEVVRLVKPTAI 420
Query: 1368 IGV 1376
IGV
Sbjct: 421 IGV 423
>ref|XP_001924368.2| PREDICTED: NADP-dependent malic enzyme [Sus scrofa].
Length = 571
Score = 588 bits (1515), Expect = e-168
Identities = 279/374 (74%), Positives = 329/374 (87%)
Frame = +3
Query: 255 PRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQ 434
PR +RGY VTR PHLNK +AFTLEER QL IHGL+PPCF+SQD+Q+LR+++ +ER
Sbjct: 6 PRRRHTLQRGYAVTRIPHLNKDLAFTLEERQQLNIHGLLPPCFISQDIQVLRVIKNFERL 65
Query: 435 QSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFI 614
SD D+Y++LM LQDRNEKLFY+VL SD+EKFMPIVYTPTVGLACQ Y L FR+PRGLFI
Sbjct: 66 NSDFDRYLLLMDLQDRNEKLFYKVLMSDIEKFMPIVYTPTVGLACQQYSLAFRKPRGLFI 125
Query: 615 TIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNP 794
+IHD+GH+ ++LN+WPED IKAVVVTDGERILGLGDLGC GMGIPVGKLALYTACGGVNP
Sbjct: 126 SIHDRGHVASVLNAWPEDVIKAVVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNP 185
Query: 795 RQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFE 974
++CLPV+LDVGT NEELL+DPLYIGL+ RRVRG +YDD LDEFM+AV+ K+G+NCLIQFE
Sbjct: 186 QECLPVILDVGTENEELLKDPLYIGLRQRRVRGPEYDDFLDEFMEAVSSKYGMNCLIQFE 245
Query: 975 DFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEA 1154
DFAN NAFRLL KY+N+YC FNDDIQGTASVAVAGILAALRITKNKLS+ +FQGAGEA
Sbjct: 246 DFANINAFRLLKKYQNQYCTFNDDIQGTASVAVAGILAALRITKNKLSDQTILFQGAGEA 305
Query: 1155 AMGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLE 1334
A+GIAHL+VMA+EK GVPK +A +KIW+VDS+GLIVKGR+ L HEKE FA +H EM +LE
Sbjct: 306 ALGIAHLIVMAMEKEGVPKEKAIKKIWLVDSKGLIVKGRAALTHEKEEFAHEHEEMKNLE 365
Query: 1335 EVVRLVNPTAIIGV 1376
+V+ + PTA+IGV
Sbjct: 366 AIVQDIKPTALIGV 379
>ref|XP_003121491.2| PREDICTED: NAD-dependent malic enzyme, mitochondrial [Sus scrofa].
Length = 502
Score = 441 bits (1134), Expect = e-124
Identities = 215/377 (57%), Positives = 282/377 (74%), Gaps = 4/377 (1%)
Frame = +3
Query: 258 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 437
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 18 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNVKKLN 77
Query: 438 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 617
L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 78 GPLEKYIYIMGIQERNEKLFYRILQDDIETLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 137
Query: 618 IHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 797
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 138 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 197
Query: 798 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFED 977
+CLPV +DVGT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 198 RCLPVCIDVGTDNPALLKDPFYMGLYQKRDRSQRYDDLIDEFMKAITDRYGRNILIQFED 257
Query: 978 FANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAA 1157
F N NAFR L KYR KYC FNDDIQGTA+VA+AG+LAA ++ +S H +F GAGE +
Sbjct: 258 FGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVIGKSISEHKILFLGAGEVS 317
Query: 1158 MG-IAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGR-SHLNHEKEMFAQDHPE--MS 1325
IA+L+VMA+ + G+ + EA +KIWMVD GL+ KGR + ++ +E FA P+
Sbjct: 318 CSWIANLIVMAMVENGLSEEEAQKKIWMVDKFGLLFKGRKAKIDSHQEPFAHPAPDNIPD 377
Query: 1326 SLEEVVRLVNPTAIIGV 1376
+ E+ V ++ P+AIIGV
Sbjct: 378 NFEDAVNILKPSAIIGV 394
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,305,428
Number of extensions: 1001661
Number of successful extensions: 5281
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5172
Number of HSP's successfully gapped: 3
Length of query: 459
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 357
Effective length of database: 8,804,438
Effective search space: 3143184366
Effective search space used: 3143184366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008245
(1378 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_852072.2| NADP-dependent malic enzyme, mitochondrial prec... 763 0.0
Alignment gi|NP_032641.2| NADP-dependent malic enzyme isoform 1 [Mus musc... 580 e-166
Alignment gi|NP_001185862.1| NADP-dependent malic enzyme isoform 2 [Mus m... 557 e-159
Alignment gi|NP_663469.1| NAD-dependent malic enzyme, mitochondrial precu... 450 e-126
Alignment gi|XP_003086141.1| PREDICTED: NAD-dependent malic enzyme, mitoc... 404 e-112
>ref|NP_852072.2| NADP-dependent malic enzyme, mitochondrial precursor [Mus musculus].
Length = 604
Score = 763 bits (1971), Expect = 0.0
Identities = 373/414 (90%), Positives = 392/414 (94%)
Frame = +3
Query: 135 MGASLGSGARVALLPRQACGAVXXXXXXXXXXDCHSKTGLPRPVPLKKRGYDVTRNPHLN 314
MGA+LG+GAR+ +PR AC ++ CHSK+G PRPVPLKKRGYDVTRNPHLN
Sbjct: 1 MGAALGTGARLTSVPRIACSSLRRQAPSAPAQGCHSKSGPPRPVPLKKRGYDVTRNPHLN 60
Query: 315 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 494
KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYE QQSDLDKYIILMTLQDRNEKL
Sbjct: 61 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYENQQSDLDKYIILMTLQDRNEKL 120
Query: 495 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 674
FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGH+ TMLNSWPED+I
Sbjct: 121 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHIATMLNSWPEDNI 180
Query: 675 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 854
KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNP+QCLPVLLDVGTNNEELLRD
Sbjct: 181 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRD 240
Query: 855 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 1034
PLYIGLKH+RVRG++YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM
Sbjct: 241 PLYIGLKHQRVRGEEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 300
Query: 1035 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKA 1214
FNDDIQGTASVAVAGILAALRITKN+LSNHVFVFQGAGEAAMGIAHLLVMALEK G+PK
Sbjct: 301 FNDDIQGTASVAVAGILAALRITKNRLSNHVFVFQGAGEAAMGIAHLLVMALEKEGIPKT 360
Query: 1215 EATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
EA +KIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE++SLEEVVRLV PTAIIGV
Sbjct: 361 EAIKKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGV 414
>ref|NP_032641.2| NADP-dependent malic enzyme isoform 1 [Mus musculus].
Length = 572
Score = 580 bits (1495), Expect = e-166
Identities = 275/374 (73%), Positives = 325/374 (86%)
Frame = +3
Query: 255 PRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQ 434
PR +RGY +TR+PHLNK +AFTLEER QL IHGL+PPC +SQ++Q+LRI++ +ER
Sbjct: 6 PRRRHTHQRGYLLTRDPHLNKDLAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFERL 65
Query: 435 QSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFI 614
SD D+Y++LM LQDRNEKLFY VL SDVEKFMPIVYTPTVGLACQ Y L FR+PRGLFI
Sbjct: 66 NSDFDRYLLLMDLQDRNEKLFYSVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFI 125
Query: 615 TIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNP 794
+IHDKGH+ ++LN+WPED +KA+VVTDGERILGLGDLGC GMGIPVGKLALYTACGGVNP
Sbjct: 126 SIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNP 185
Query: 795 RQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFE 974
+QCLP+ LDVGT NEELL+DPLYIGL+HRRVRG +YD LDEFM+A + K+G+NCLIQFE
Sbjct: 186 QQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQFE 245
Query: 975 DFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEA 1154
DFAN NAFRLLNKYRNKYC FNDDIQGTASVAVAG+LAALRITKNKLS+ +FQGAGEA
Sbjct: 246 DFANRNAFRLLNKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTVLFQGAGEA 305
Query: 1155 AMGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLE 1334
A+GIAHL+VMA+EK G+ K A +KIW+VDS+GLIVKGR+ L EKE+FA +H EM +LE
Sbjct: 306 ALGIAHLVVMAMEKEGLSKENARKKIWLVDSKGLIVKGRASLTEEKEVFAHEHEEMKNLE 365
Query: 1335 EVVRLVNPTAIIGV 1376
+V+ + PTA+IGV
Sbjct: 366 AIVQKIKPTALIGV 379
>ref|NP_001185862.1| NADP-dependent malic enzyme isoform 2 [Mus musculus].
Length = 552
Score = 557 bits (1436), Expect = e-159
Identities = 263/352 (74%), Positives = 310/352 (88%)
Frame = +3
Query: 321 MAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFY 500
+AFTLEER QL IHGL+PPC +SQ++Q+LRI++ +ER SD D+Y++LM LQDRNEKLFY
Sbjct: 8 LAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFERLNSDFDRYLLLMDLQDRNEKLFY 67
Query: 501 RVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKA 680
VL SDVEKFMPIVYTPTVGLACQ Y L FR+PRGLFI+IHDKGH+ ++LN+WPED +KA
Sbjct: 68 SVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVLNAWPEDVVKA 127
Query: 681 VVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPL 860
+VVTDGERILGLGDLGC GMGIPVGKLALYTACGGVNP+QCLP+ LDVGT NEELL+DPL
Sbjct: 128 IVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPL 187
Query: 861 YIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFN 1040
YIGL+HRRVRG +YD LDEFM+A + K+G+NCLIQFEDFAN NAFRLLNKYRNKYC FN
Sbjct: 188 YIGLRHRRVRGPEYDAFLDEFMEAASSKYGMNCLIQFEDFANRNAFRLLNKYRNKYCTFN 247
Query: 1041 DDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKAEA 1220
DDIQGTASVAVAG+LAALRITKNKLS+ +FQGAGEAA+GIAHL+VMA+EK G+ K A
Sbjct: 248 DDIQGTASVAVAGLLAALRITKNKLSDQTVLFQGAGEAALGIAHLVVMAMEKEGLSKENA 307
Query: 1221 TRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
+KIW+VDS+GLIVKGR+ L EKE+FA +H EM +LE +V+ + PTA+IGV
Sbjct: 308 RKKIWLVDSKGLIVKGRASLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIGV 359
>ref|NP_663469.1| NAD-dependent malic enzyme, mitochondrial precursor [Mus musculus].
Length = 589
Score = 450 bits (1157), Expect = e-126
Identities = 218/376 (57%), Positives = 285/376 (75%), Gaps = 3/376 (0%)
Frame = +3
Query: 258 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 437
R V LK++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 17 RRVHLKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMT 76
Query: 438 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 617
S L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 77 SPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACCQYGHIFRRPKGLFIS 136
Query: 618 IHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 797
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 137 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIQPE 196
Query: 798 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFED 977
+CLPV +DVGT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 197 KCLPVCIDVGTDNMALLKDPFYMGLYQKRDRSQLYDDLMDEFMKAITDRYGRNTLIQFED 256
Query: 978 FANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAA 1157
F N NAFR L KY+ KYC FNDDIQGTA+VA++G+LAA R+ +S H +F GAGEAA
Sbjct: 257 FGNHNAFRFLRKYQQKYCTFNDDIQGTAAVALSGLLAAQRVINKPVSEHKILFLGAGEAA 316
Query: 1158 MGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGR-SHLNHEKEMFAQDHPEM--SS 1328
+GIA+L+V+++ + G+ + EA RKIWM D GL+VKGR + ++ +E +A PE ++
Sbjct: 317 LGIANLIVLSMVESGLSEEEAQRKIWMFDKSGLLVKGRTASIDSNQEPYAHAAPESIPAT 376
Query: 1329 LEEVVRLVNPTAIIGV 1376
E+ V + P+ IIGV
Sbjct: 377 FEDAVNKLKPSVIIGV 392
>ref|XP_003086141.1| PREDICTED: NAD-dependent malic enzyme, mitochondrial-like [Mus
musculus].
Length = 563
Score = 404 bits (1037), Expect = e-112
Identities = 203/376 (53%), Positives = 264/376 (70%), Gaps = 3/376 (0%)
Frame = +3
Query: 258 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 437
R V LK++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 17 RRVHLKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMT 76
Query: 438 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 617
S L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 77 SPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACCQYGHIFRRPKGLFIS 136
Query: 618 IHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 797
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 137 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIQPE 196
Query: 798 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFED 977
+CLPV +DVGT+N LL+DP YI +G N LIQFED
Sbjct: 197 KCLPVCIDVGTDNMALLKDPFYI--------------------------YGRNTLIQFED 230
Query: 978 FANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAA 1157
F N NAFR L KY+ KYC FNDDIQGTA+VA++G+LAA R+ +S H +F GAGEAA
Sbjct: 231 FGNHNAFRFLRKYQQKYCTFNDDIQGTAAVALSGLLAAQRVINKPVSEHKILFLGAGEAA 290
Query: 1158 MGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGR-SHLNHEKEMFAQDHPEM--SS 1328
+GIA+L+V+++ + G+ + EA RKIWM D GL+VKGR + ++ +E +A PE ++
Sbjct: 291 LGIANLIVLSMVESGLSEEEAQRKIWMFDKSGLLVKGRTASIDSNQEPYAHAAPESIPAT 350
Query: 1329 LEEVVRLVNPTAIIGV 1376
E+ V + P+ IIGV
Sbjct: 351 FEDAVNKLKPSVIIGV 366
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,625,908
Number of extensions: 1277704
Number of successful extensions: 5831
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5750
Number of HSP's successfully gapped: 5
Length of query: 459
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 354
Effective length of database: 12,463,779
Effective search space: 4412177766
Effective search space used: 4412177766
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008245
(1378 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001155058.1| NADP-dependent malic enzyme, mitochondrial p... 766 0.0
Alignment gi|NP_001014811.1| NADP-dependent malic enzyme, mitochondrial p... 766 0.0
Alignment gi|NP_006671.2| NADP-dependent malic enzyme, mitochondrial prec... 766 0.0
Alignment gi|NP_002386.1| NADP-dependent malic enzyme [Homo sapiens]. 586 e-167
Alignment gi|NP_002387.1| NAD-dependent malic enzyme, mitochondrial isofo... 451 e-127
Alignment gi|NP_001161807.1| NAD-dependent malic enzyme, mitochondrial is... 451 e-127
>ref|NP_001155058.1| NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens].
Length = 604
Score = 766 bits (1977), Expect = 0.0
Identities = 379/414 (91%), Positives = 391/414 (94%)
Frame = +3
Query: 135 MGASLGSGARVALLPRQACGAVXXXXXXXXXXDCHSKTGLPRPVPLKKRGYDVTRNPHLN 314
MGA+LG+G R+A P +ACGA+ CHSK G RPVPLKKRGYDVTRNPHLN
Sbjct: 1 MGAALGTGTRLAPWPGRACGALPRWTPTAPAQGCHSKPGPARPVPLKKRGYDVTRNPHLN 60
Query: 315 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 494
KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL
Sbjct: 61 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 120
Query: 495 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 674
FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHL TMLNSWPED+I
Sbjct: 121 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLATMLNSWPEDNI 180
Query: 675 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 854
KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNP+QCLPVLLDVGTNNEELLRD
Sbjct: 181 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRD 240
Query: 855 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 1034
PLYIGLKH+RV G+ YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM
Sbjct: 241 PLYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 300
Query: 1035 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKA 1214
FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKA
Sbjct: 301 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKA 360
Query: 1215 EATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
EATRKIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE++SLEEVVRLV PTAIIGV
Sbjct: 361 EATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGV 414
>ref|NP_001014811.1| NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens].
Length = 604
Score = 766 bits (1977), Expect = 0.0
Identities = 379/414 (91%), Positives = 391/414 (94%)
Frame = +3
Query: 135 MGASLGSGARVALLPRQACGAVXXXXXXXXXXDCHSKTGLPRPVPLKKRGYDVTRNPHLN 314
MGA+LG+G R+A P +ACGA+ CHSK G RPVPLKKRGYDVTRNPHLN
Sbjct: 1 MGAALGTGTRLAPWPGRACGALPRWTPTAPAQGCHSKPGPARPVPLKKRGYDVTRNPHLN 60
Query: 315 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 494
KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL
Sbjct: 61 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 120
Query: 495 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 674
FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHL TMLNSWPED+I
Sbjct: 121 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLATMLNSWPEDNI 180
Query: 675 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 854
KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNP+QCLPVLLDVGTNNEELLRD
Sbjct: 181 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRD 240
Query: 855 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 1034
PLYIGLKH+RV G+ YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM
Sbjct: 241 PLYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 300
Query: 1035 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKA 1214
FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKA
Sbjct: 301 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKA 360
Query: 1215 EATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
EATRKIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE++SLEEVVRLV PTAIIGV
Sbjct: 361 EATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGV 414
>ref|NP_006671.2| NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens].
Length = 604
Score = 766 bits (1977), Expect = 0.0
Identities = 379/414 (91%), Positives = 391/414 (94%)
Frame = +3
Query: 135 MGASLGSGARVALLPRQACGAVXXXXXXXXXXDCHSKTGLPRPVPLKKRGYDVTRNPHLN 314
MGA+LG+G R+A P +ACGA+ CHSK G RPVPLKKRGYDVTRNPHLN
Sbjct: 1 MGAALGTGTRLAPWPGRACGALPRWTPTAPAQGCHSKPGPARPVPLKKRGYDVTRNPHLN 60
Query: 315 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 494
KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL
Sbjct: 61 KGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKL 120
Query: 495 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDI 674
FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHL TMLNSWPED+I
Sbjct: 121 FYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLATMLNSWPEDNI 180
Query: 675 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRD 854
KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNP+QCLPVLLDVGTNNEELLRD
Sbjct: 181 KAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRD 240
Query: 855 PLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 1034
PLYIGLKH+RV G+ YDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM
Sbjct: 241 PLYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCM 300
Query: 1035 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKGGVPKA 1214
FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEK GVPKA
Sbjct: 301 FNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKA 360
Query: 1215 EATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLEEVVRLVNPTAIIGV 1376
EATRKIWMVDS+GLIVKGRSHLNHEKEMFAQDHPE++SLEEVVRLV PTAIIGV
Sbjct: 361 EATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGV 414
>ref|NP_002386.1| NADP-dependent malic enzyme [Homo sapiens].
Length = 572
Score = 586 bits (1510), Expect = e-167
Identities = 277/374 (74%), Positives = 328/374 (87%)
Frame = +3
Query: 255 PRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQ 434
PR +RGY +TRNPHLNK +AFTLEER QL IHGL+PP F SQ++Q+LR+++ +E
Sbjct: 6 PRRRHTHQRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHL 65
Query: 435 QSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFI 614
SD D+Y++LM LQDRNEKLFYRVLTSD+EKFMPIVYTPTVGLACQ Y L FR+PRGLFI
Sbjct: 66 NSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFI 125
Query: 615 TIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNP 794
TIHD+GH+ ++LN+WPED IKA+VVTDGERILGLGDLGC GMGIPVGKLALYTACGG+NP
Sbjct: 126 TIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNP 185
Query: 795 RQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFE 974
++CLPV+LDVGT NEELL+DPLYIGL+ RRVRG +YDD LDEFM+AV+ K+G+NCLIQFE
Sbjct: 186 QECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFE 245
Query: 975 DFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEA 1154
DFAN NAFRLLNKYRN+YC FNDDIQGTASVAVAG+LAALRITKNKLS+ +FQGAGEA
Sbjct: 246 DFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEA 305
Query: 1155 AMGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEMSSLE 1334
A+GIAHL+VMALEK G+PK +A +KIW+VDS+GLIVKGR+ L EKE FA +H EM +LE
Sbjct: 306 ALGIAHLIVMALEKEGLPKEKAIKKIWLVDSKGLIVKGRASLTQEKEKFAHEHEEMKNLE 365
Query: 1335 EVVRLVNPTAIIGV 1376
+V+ + PTA+IGV
Sbjct: 366 AIVQEIKPTALIGV 379
>ref|NP_002387.1| NAD-dependent malic enzyme, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 584
Score = 451 bits (1160), Expect = e-127
Identities = 217/376 (57%), Positives = 284/376 (75%), Gaps = 3/376 (0%)
Frame = +3
Query: 258 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 437
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 17 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMT 76
Query: 438 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 617
S L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 77 SPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 136
Query: 618 IHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 797
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 137 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 196
Query: 798 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFED 977
+CLPV +DVGT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 197 RCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFED 256
Query: 978 FANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAA 1157
F N NAFR L KYR KYC FNDDIQGTA+VA+AG+LAA ++ +S H +F GAGEAA
Sbjct: 257 FGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAA 316
Query: 1158 MGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGR-SHLNHEKEMFAQDHPEM--SS 1328
+GIA+L+VM++ + G+ + EA +KIWM D GL+VKGR + ++ +E F PE +
Sbjct: 317 LGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDT 376
Query: 1329 LEEVVRLVNPTAIIGV 1376
E+ V ++ P+ IIGV
Sbjct: 377 FEDAVNILKPSTIIGV 392
>ref|NP_001161807.1| NAD-dependent malic enzyme, mitochondrial isoform 2 precursor [Homo
sapiens].
Length = 479
Score = 451 bits (1160), Expect = e-127
Identities = 217/376 (57%), Positives = 284/376 (75%), Gaps = 3/376 (0%)
Frame = +3
Query: 258 RPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQ 437
R + +K++G + NP NKGMAFTL+ER LG+ GL+PP +QD+Q LR R ++
Sbjct: 17 RHLHIKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMT 76
Query: 438 SDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFIT 617
S L+KYI +M +Q+RNEKLFYR+L D+E MPIVYTPTVGLAC YG FRRP+GLFI+
Sbjct: 77 SPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFIS 136
Query: 618 IHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPR 797
I D+GH+ +++++WPE+ +KAVVVTDGERILGLGDLG YGMGIPVGKL LYTAC G+ P
Sbjct: 137 ISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPD 196
Query: 798 QCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFED 977
+CLPV +DVGT+N LL+DP Y+GL +R R Q YDDL+DEFM+A+TD++G N LIQFED
Sbjct: 197 RCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFED 256
Query: 978 FANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAA 1157
F N NAFR L KYR KYC FNDDIQGTA+VA+AG+LAA ++ +S H +F GAGEAA
Sbjct: 257 FGNHNAFRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAA 316
Query: 1158 MGIAHLLVMALEKGGVPKAEATRKIWMVDSRGLIVKGR-SHLNHEKEMFAQDHPEM--SS 1328
+GIA+L+VM++ + G+ + EA +KIWM D GL+VKGR + ++ +E F PE +
Sbjct: 317 LGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDT 376
Query: 1329 LEEVVRLVNPTAIIGV 1376
E+ V ++ P+ IIGV
Sbjct: 377 FEDAVNILKPSTIIGV 392
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,180,525
Number of extensions: 1547861
Number of successful extensions: 7404
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7297
Number of HSP's successfully gapped: 6
Length of query: 459
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 353
Effective length of database: 14,802,980
Effective search space: 5225451940
Effective search space used: 5225451940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008245
(1378 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 391 e-106
Sscrofa_Chr01 66 5e-08
>Sscrofa_Chr09
|| Length = 153670197
Score = 391 bits (197), Expect = e-106
Identities = 200/201 (99%)
Strand = Plus / Minus
Query: 118 aggtctgcgcaaggaccatgggtgcgtcgctgggcagcggcgcgcgggtggctctcctgc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22780254 aggtctgcgcaaggaccatgggtgcgtcgctgggcagcggcgcgcgggtggctctcctgc 22780195
Query: 178 cccgccaggcctgcggcgccgtccggcgctgggcaccccccgcgcccgcccgagactgcc 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 22780194 cccgccaggcctgcggcgccgtccggcgctgggcaccccccgcgcccgcccgaggctgcc 22780135
Query: 238 actccaagacgggcctgccgcgtcctgtgcccctgaagaagcgcggatacgatgtcacca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22780134 actccaagacgggcctgccgcgtcctgtgcccctgaagaagcgcggatacgatgtcacca 22780075
Query: 298 ggaatccgcatctcaacaagg 318
|||||||||||||||||||||
Sbjct: 22780074 ggaatccgcatctcaacaagg 22780054
Score = 327 bits (165), Expect = 9e-87
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 676 aggctgtggtggtgaccgatggggagcgcatcctgggcctgggagacctgggctgctacg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22646698 aggctgtggtggtgaccgatggggagcgcatcctgggcctgggagacctgggctgctacg 22646639
Query: 736 gcatgggcatccccgtgggcaagctggccctgtacacggcgtgtggaggcgtcaaccctc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22646638 gcatgggcatccccgtgggcaagctggccctgtacacggcgtgtggaggcgtcaaccctc 22646579
Query: 796 ggcagtgcctccctgtcctgctggacgtcggcaccaacaacgagg 840
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22646578 ggcagtgcctccctgtcctgctggacgtcggcaccaacaacgagg 22646534
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 452 gtacatcattctgatgaccctccaagaccggaacgagaagctcttctaccgagtgctgac 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22689205 gtacatcattctgatgaccctccaagaccggaacgagaagctcttctaccgagtgctgac 22689146
Query: 512 gtccgacgtggagaaattcatgcccatcgtgtacacgcccaccgtgggactggcctgtca 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22689145 gtccgacgtggagaaattcatgcccatcgtgtacacgcccaccgtgggactggcctgtca 22689086
Query: 572 gcactacggcctgaccttccgcaggccccg 601
||||||||||||||||||||||||||||||
Sbjct: 22689085 gcactacggcctgaccttccgcaggccccg 22689056
Score = 232 bits (117), Expect = 4e-58
Identities = 131/138 (94%)
Strand = Plus / Minus
Query: 316 agggtatggccttcacacttgaagaaaggctgcagcttggaatccatggcctaatnnnnn 375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22691970 agggtatggccttcacacttgaagaaaggctgcagcttggaatccatggcctaatccccc 22691911
Query: 376 nntgcttcttgagccaggacgtccagctcctccggatcatgagatactacgagcggcagc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22691910 cctgcttcttgagccaggacgtccagctcctccggatcatgagatactacgagcggcagc 22691851
Query: 436 agagtgacctggacaagt 453
||||||||||||||||||
Sbjct: 22691850 agagtgacctggacaagt 22691833
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 944 gtttggaataaattgcctcattcagtttgaagactttgccaacgccaatgccttccgcct 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22612565 gtttggaataaattgcctcattcagtttgaagactttgccaacgccaatgccttccgcct 22612506
Query: 1004 tctcaacaaataccgcaacaagtactgcatgttcaacgatgacatccaagg 1054
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22612505 tctcaacaaataccgcaacaagtactgcatgttcaacgatgacatccaagg 22612455
Score = 216 bits (109), Expect = 2e-53
Identities = 115/117 (98%)
Strand = Plus / Minus
Query: 1150 aggcagccatgggcatcgcccacctccttgtcatggccctagagaaaggaggtgtaccca 1209
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 22597849 aggcagccatgggcatcgcccacctccttgtcatggccctagagaaagaaggtgtaccca 22597790
Query: 1210 aggcagaggccacgaggaagatctggatggtggactccagagggctcattgtcaagg 1266
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22597789 aggcagaggccacaaggaagatctggatggtggactccagagggctcattgtcaagg 22597733
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 838 aggagctgctccgagaccctctgtacatcggcctgaagcaccggcgcgtgcgcggccaag 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22635204 aggagctgctccgagaccctctgtacatcggcctgaagcaccggcgcgtgcgcggccaag 22635145
Query: 898 attacgacgaccttctggacgagttcatgcaggctgtgacggacaagt 945
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22635144 attacgacgaccttctggacgagttcatgcaggctgtgacggacaagt 22635097
Score = 208 bits (105), Expect = 6e-51
Identities = 118/121 (97%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 2 agcgcctcgccccgcctgccccgcagccgggtcgcgtagac-tcagctccgggcgcagca 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 22780675 agcgcctcgccccgcctgccccgcagccgggtcgcgtagacatcagctccgggcacagca 22780616
Query: 61 caggtgggctggggaagccagagacccaggcgcgccaccgccaccgatcgggattggagg 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 22780615 caggtgggctggggaagccagagacccaggcgctccaccgccaccgatcgggattggagg 22780556
Query: 121 t 121
|
Sbjct: 22780555 t 22780555
Score = 186 bits (94), Expect = 2e-44
Identities = 106/110 (96%)
Strand = Plus / Minus
Query: 1264 aggggaggagccacctgaaccatgagaaggagatgtttgcccaggaccatcctgaaatga 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 22595699 aggggaggagccacctgaaccatgagaaggagatgtttgcccaggaccatcctgaagtga 22595640
Query: 1324 gctccctcgaagaggtggtgaggctggtgaaccccacggccatcataggt 1373
|||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct: 22595639 gctccctcgaggaggtggtgaggctggtgaagcccacagccatcataggt 22595590
Score = 159 bits (80), Expect = 5e-36
Identities = 95/100 (95%)
Strand = Plus / Minus
Query: 1053 ggcacagcctccgtcgctgtggcagggatcctggctgctctgcgaatcaccaagaacaag 1112
|||||||| ||||||| || ||||||||||| |||||||||||||||||||||| |||||
Sbjct: 22598200 ggcacagcatccgtcgatgcggcagggatccaggctgctctgcgaatcaccaaggacaag 22598141
Query: 1113 ctctccaaccacgtgtttgttttccaaggtgccggtgagg 1152
||||||||||||||||||||||||||||||||||||||||
Sbjct: 22598140 ctctccaaccacgtgtttgttttccaaggtgccggtgagg 22598101
Score = 155 bits (78), Expect = 8e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 601 gtgggctctttatcaccattcatgacaagggccatcttccaacaatgctgaactcttggc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22656478 gtgggctctttatcaccattcatgacaagggccatcttccaacaatgctgaactcttggc 22656419
Query: 661 cagaagatgatattaagg 678
||||||||||||||||||
Sbjct: 22656418 cagaagatgatattaagg 22656401
>Sscrofa_Chr01
|| Length = 315321322
Score = 65.9 bits (33), Expect = 5e-08
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 676 aggctgtggtggtgaccgatggggagcgcatcctgggcctgggagacctgggctgctacg 735
||||||| |||||||| ||||| || || || || |||||||||||||| ||||| |||
Sbjct: 93129350 aggctgtcgtggtgactgatggagaacgtattcttggcctgggagaccttggctgtaacg 93129409
Query: 736 gcatgggcatccccgtgggcaagctggccctgtacacggcgtgtggagg 784
| ||||||||||| ||||| || ||||| || || || || ||||||||
Sbjct: 93129410 ggatgggcatccctgtgggtaaactggcactctatacagcatgtggagg 93129458
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,922,897
Number of extensions: 151
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 12
Length of query: 1378
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1357
Effective length of database: 2,808,413,156
Effective search space: 3811016652692
Effective search space used: 3811016652692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)