Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008251
(1188 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076980.1| dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl m... 511 e-145
>ref|NP_001076980.1| dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase [Bos
taurus].
Length = 438
Score = 511 bits (1317), Expect = e-145
Identities = 257/375 (68%), Positives = 261/375 (69%)
Frame = +2
Query: 17 MAASLXXXXXXXXXXXXXXQCGQWLRRAWQEXXXXXXXXXXXXXXXXXXXXXEVGITFWV 196
MAA L CGQWLRRAWQE EVGITFWV
Sbjct: 1 MAAGLRKRGRAGPATRAAGLCGQWLRRAWQERRLLLLEPRYTLLVAACLCLAEVGITFWV 60
Query: 197 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTD 376
IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYAT RG D
Sbjct: 61 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATDRGAD 120
Query: 377 IRTAQHXXXXXXXXXXXXXXXXXHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMA 556
IR AQH HQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAM
Sbjct: 121 IRMAQHIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMV 180
Query: 557 XXXXXXXXXXAQRWGWGCCCFSLAVSVKMNVXXXXXXXXXXXXXXXXXXXALPKLGICAV 736
AQRW WGCCCFSLAVSVKM+V ALPKLGICAV
Sbjct: 181 LLFLSVNLLLAQRWSWGCCCFSLAVSVKMSVLLFAPGLLFLLLTKFGLRGALPKLGICAV 240
Query: 737 LQVVLGLPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEAXXXXXXXXXXXXXXXXXX 916
LQVVLGLPFLL+NP+GYLSRSFDLGRQFLFRWTVNWRFLPEA
Sbjct: 241 LQVVLGLPFLLKNPVGYLSRSFDLGRQFLFRWTVNWRFLPEALFLHRAFHLALLTAHLTV 300
Query: 917 XXXXXXCRWHRTGESILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFTRSLHYQF 1096
CRWHRTGE ILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICF+RSLHYQF
Sbjct: 301 LLLFALCRWHRTGEGILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF 360
Query: 1097 YVWYFHTLPYLLVAT 1141
YVWYFHTLPYLL AT
Sbjct: 361 YVWYFHTLPYLLWAT 375
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,884,030
Number of extensions: 1132310
Number of successful extensions: 5168
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5142
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 292
Effective length of database: 14,240,222
Effective search space: 4158144824
Effective search space used: 4158144824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008251
(1188 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535823.1| PREDICTED: similar to Dolichyl-P-Man:Man(5)GlcN... 521 e-148
Alignment gi|XP_859208.1| PREDICTED: similar to alpha-1,3-mannosyltransfe... 472 e-133
>ref|XP_535823.1| PREDICTED: similar to Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl
mannosyltransferase (Dol-P-Man dependent
alpha(1-3)-mannosyltransferase) (Not56-like protein)
isoform 1 [Canis familiaris].
Length = 438
Score = 521 bits (1341), Expect = e-148
Identities = 257/355 (72%), Positives = 262/355 (73%)
Frame = +2
Query: 77 CGQWLRRAWQEXXXXXXXXXXXXXXXXXXXXXEVGITFWVIHRVAYTEIDWKAYMAEVEG 256
CGQWLRRAWQE EVGITFWVIHRVAYTEIDWKAYMA+VEG
Sbjct: 21 CGQWLRRAWQERRLLLLEPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAQVEG 80
Query: 257 VINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTDIRTAQHXXXXXXXXXXXXXX 436
VINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTDIR AQH
Sbjct: 81 VINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTDIRMAQHIFAVLYLATLLLVF 140
Query: 437 XXXHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMAXXXXXXXXXXAQRWGWGCCC 616
HQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMA A+RWGWGCCC
Sbjct: 141 LIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMALLFLSINLLLARRWGWGCCC 200
Query: 617 FSLAVSVKMNVXXXXXXXXXXXXXXXXXXXALPKLGICAVLQVVLGLPFLLENPIGYLSR 796
FSLAVSVKMNV ALPKLGICAVLQVVLGLPFLLENPIGYLSR
Sbjct: 201 FSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAVLQVVLGLPFLLENPIGYLSR 260
Query: 797 SFDLGRQFLFRWTVNWRFLPEAXXXXXXXXXXXXXXXXXXXXXXXXCRWHRTGESILSLL 976
SFDLGRQFLFRWTVNWRFLPEA C+WHRTGESILSLL
Sbjct: 261 SFDLGRQFLFRWTVNWRFLPEALFLHRAFHVALLAAHLTLLFLFAFCKWHRTGESILSLL 320
Query: 977 KDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFTRSLHYQFYVWYFHTLPYLLVAT 1141
KDPSKRKVPPQPLTPNQI+STLFTSNFIGICF+RSLHYQFYVWYFHTLPYLL AT
Sbjct: 321 KDPSKRKVPPQPLTPNQIISTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWAT 375
>ref|XP_859208.1| PREDICTED: similar to alpha-1,3-mannosyltransferase ALG3 isoform c
isoform 2 [Canis familiaris].
Length = 403
Score = 472 bits (1215), Expect = e-133
Identities = 232/309 (75%), Positives = 237/309 (76%)
Frame = +2
Query: 215 TEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTDIRTAQH 394
TEIDWKAYMA+VEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTDIR AQH
Sbjct: 32 TEIDWKAYMAQVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTDIRMAQH 91
Query: 395 XXXXXXXXXXXXXXXXXHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMAXXXXXX 574
HQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMA
Sbjct: 92 IFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMALLFLSI 151
Query: 575 XXXXAQRWGWGCCCFSLAVSVKMNVXXXXXXXXXXXXXXXXXXXALPKLGICAVLQVVLG 754
A+RWGWGCCCFSLAVSVKMNV ALPKLGICAVLQVVLG
Sbjct: 152 NLLLARRWGWGCCCFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAVLQVVLG 211
Query: 755 LPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEAXXXXXXXXXXXXXXXXXXXXXXXX 934
LPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEA
Sbjct: 212 LPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEALFLHRAFHVALLAAHLTLLFLFAF 271
Query: 935 CRWHRTGESILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFTRSLHYQFYVWYFH 1114
C+WHRTGESILSLLKDPSKRKVPPQPLTPNQI+STLFTSNFIGICF+RSLHYQFYVWYFH
Sbjct: 272 CKWHRTGESILSLLKDPSKRKVPPQPLTPNQIISTLFTSNFIGICFSRSLHYQFYVWYFH 331
Query: 1115 TLPYLLVAT 1141
TLPYLL AT
Sbjct: 332 TLPYLLWAT 340
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,759,186
Number of extensions: 1170280
Number of successful extensions: 5169
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5149
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 291
Effective length of database: 15,374,224
Effective search space: 4473899184
Effective search space used: 4473899184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008251
(1188 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358760.1| PREDICTED: dolichyl-P-Man:Man(5)GlcNAc(2)-PP... 532 e-151
>ref|XP_003358760.1| PREDICTED: dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl
mannosyltransferase [Sus scrofa].
Length = 438
Score = 532 bits (1370), Expect = e-151
Identities = 268/375 (71%), Positives = 269/375 (71%)
Frame = +2
Query: 17 MAASLXXXXXXXXXXXXXXQCGQWLRRAWQEXXXXXXXXXXXXXXXXXXXXXEVGITFWV 196
MAASL QCGQWLRRAWQE EVGITFWV
Sbjct: 1 MAASLRKRGRAGPAALAAGQCGQWLRRAWQERRLLLLEPRYTLLVAACLCLAEVGITFWV 60
Query: 197 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTD 376
IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTD
Sbjct: 61 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTD 120
Query: 377 IRTAQHXXXXXXXXXXXXXXXXXHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMA 556
IRTAQH HQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMA
Sbjct: 121 IRTAQHIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMA 180
Query: 557 XXXXXXXXXXAQRWGWGCCCFSLAVSVKMNVXXXXXXXXXXXXXXXXXXXALPKLGICAV 736
AQRWGWGCCCFSLAVSVKMNV ALPKLGICAV
Sbjct: 181 LLFLSINLLLAQRWGWGCCCFSLAVSVKMNVLLFAPGLLFLLLTQFGLRGALPKLGICAV 240
Query: 737 LQVVLGLPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEAXXXXXXXXXXXXXXXXXX 916
LQVVLGLPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEA
Sbjct: 241 LQVVLGLPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEALFLHRAFHLALLTAHLTL 300
Query: 917 XXXXXXCRWHRTGESILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFTRSLHYQF 1096
CRWHRTGESILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICF+RSLHYQF
Sbjct: 301 LLLFTLCRWHRTGESILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF 360
Query: 1097 YVWYFHTLPYLLVAT 1141
YVWYFHTLPYLL AT
Sbjct: 361 YVWYFHTLPYLLWAT 375
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,068,895
Number of extensions: 731721
Number of successful extensions: 3388
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3355
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,829,335
Effective search space: 2604653825
Effective search space used: 2604653825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008251
(1188 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666051.2| dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mann... 477 e-135
>ref|NP_666051.2| dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase [Mus
musculus].
Length = 438
Score = 477 bits (1227), Expect = e-135
Identities = 239/352 (67%), Positives = 247/352 (70%)
Frame = +2
Query: 83 QWLRRAWQEXXXXXXXXXXXXXXXXXXXXXEVGITFWVIHRVAYTEIDWKAYMAEVEGVI 262
QWL+RAWQE EVGITFWVIHRVAYTEIDWKAYMA+VEG I
Sbjct: 23 QWLQRAWQERYLLLREPRYTLLVASCLCIAEVGITFWVIHRVAYTEIDWKAYMAQVEGFI 82
Query: 263 NGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTDIRTAQHXXXXXXXXXXXXXXXX 442
NGTYDYTQLQGDTGPLVYPAGF+YIF GL+YAT RGTDI AQ+
Sbjct: 83 NGTYDYTQLQGDTGPLVYPAGFLYIFTGLFYATDRGTDIPMAQNIFAVLYLVTLVLVFLI 142
Query: 443 XHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMAXXXXXXXXXXAQRWGWGCCCFS 622
HQT KVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMA AQ W WGCCCFS
Sbjct: 143 YHQTSKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMALLFLSINLFLAQCWSWGCCCFS 202
Query: 623 LAVSVKMNVXXXXXXXXXXXXXXXXXXXALPKLGICAVLQVVLGLPFLLENPIGYLSRSF 802
LAVSVKMNV ALPKL ICA LQVVLGLPFLLENPIGYLSRSF
Sbjct: 203 LAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLAICAALQVVLGLPFLLENPIGYLSRSF 262
Query: 803 DLGRQFLFRWTVNWRFLPEAXXXXXXXXXXXXXXXXXXXXXXXXCRWHRTGESILSLLKD 982
DLGRQFLF+WTVNWRFLPE CRWHRTGESIL+LLKD
Sbjct: 263 DLGRQFLFQWTVNWRFLPETIFLHRAFHLALLAAHLSLLLLFALCRWHRTGESILALLKD 322
Query: 983 PSKRKVPPQPLTPNQIVSTLFTSNFIGICFTRSLHYQFYVWYFHTLPYLLVA 1138
PSKRKVPPQ LTPNQIVS LFTSNFIGICF+RSLHYQFYVWYFHTLPYLL A
Sbjct: 323 PSKRKVPPQALTPNQIVSILFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWA 374
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,228,181
Number of extensions: 955458
Number of successful extensions: 4105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4045
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 293
Effective length of database: 12,523,851
Effective search space: 3669488343
Effective search space used: 3669488343
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008251
(1188 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005778.1| dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mann... 500 e-141
Alignment gi|NP_001006942.1| dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-m... 456 e-128
>ref|NP_005778.1| dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase
isoform a [Homo sapiens].
Length = 438
Score = 500 bits (1287), Expect = e-141
Identities = 254/374 (67%), Positives = 258/374 (68%)
Frame = +2
Query: 17 MAASLXXXXXXXXXXXXXXQCGQWLRRAWQEXXXXXXXXXXXXXXXXXXXXXEVGITFWV 196
MAA L C QWL+RAWQE EVGITFWV
Sbjct: 1 MAAGLRKRGRSGSAAQAEGLCKQWLQRAWQERRLLLREPRYTLLVAACLCLAEVGITFWV 60
Query: 197 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTD 376
IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYAT RGTD
Sbjct: 61 IHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTD 120
Query: 377 IRTAQHXXXXXXXXXXXXXXXXXHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMA 556
IR AQ+ HQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAM
Sbjct: 121 IRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMV 180
Query: 557 XXXXXXXXXXAQRWGWGCCCFSLAVSVKMNVXXXXXXXXXXXXXXXXXXXALPKLGICAV 736
AQRWGWGCC FSLAVSVKMNV ALPKLGICA
Sbjct: 181 LLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAG 240
Query: 737 LQVVLGLPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEAXXXXXXXXXXXXXXXXXX 916
LQVVLGLPFLLENP GYLSRSFDLGRQFLF WTVNWRFLPEA
Sbjct: 241 LQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTL 300
Query: 917 XXXXXXCRWHRTGESILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFTRSLHYQF 1096
CRWHRTGESILSLL+DPSKRKVPPQPLTPNQIVSTLFTSNFIGICF+RSLHYQF
Sbjct: 301 LLLFALCRWHRTGESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQF 360
Query: 1097 YVWYFHTLPYLLVA 1138
YVWYFHTLPYLL A
Sbjct: 361 YVWYFHTLPYLLWA 374
>ref|NP_001006942.1| dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase
isoform d [Homo sapiens].
Length = 390
Score = 456 bits (1172), Expect = e-128
Identities = 227/308 (73%), Positives = 230/308 (74%)
Frame = +2
Query: 215 TEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATGRGTDIRTAQH 394
TEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYAT RGTDIR AQ+
Sbjct: 19 TEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTDIRMAQN 78
Query: 395 XXXXXXXXXXXXXXXXXHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMAXXXXXX 574
HQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAM
Sbjct: 79 IFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMVLLFLSI 138
Query: 575 XXXXAQRWGWGCCCFSLAVSVKMNVXXXXXXXXXXXXXXXXXXXALPKLGICAVLQVVLG 754
AQRWGWGCC FSLAVSVKMNV ALPKLGICA LQVVLG
Sbjct: 139 NLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICAGLQVVLG 198
Query: 755 LPFLLENPIGYLSRSFDLGRQFLFRWTVNWRFLPEAXXXXXXXXXXXXXXXXXXXXXXXX 934
LPFLLENP GYLSRSFDLGRQFLF WTVNWRFLPEA
Sbjct: 199 LPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTLLLLFAL 258
Query: 935 CRWHRTGESILSLLKDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFTRSLHYQFYVWYFH 1114
CRWHRTGESILSLL+DPSKRKVPPQPLTPNQIVSTLFTSNFIGICF+RSLHYQFYVWYFH
Sbjct: 259 CRWHRTGESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQFYVWYFH 318
Query: 1115 TLPYLLVA 1138
TLPYLL A
Sbjct: 319 TLPYLLWA 326
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,864,479
Number of extensions: 1147682
Number of successful extensions: 5157
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5121
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 291
Effective length of database: 14,835,944
Effective search space: 4317259704
Effective search space used: 4317259704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008251
(1188 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 418 e-114
>Sscrofa_Chr13
|| Length = 218635234
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Minus
Query: 739 tcaggtggtgctggggctacccttcctgctggagaaccccatcggctacctgtcccgctc 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131583606 tcaggtggtgctggggctacccttcctgctggagaaccccatcggctacctgtcccgctc 131583547
Query: 799 gtttgaccttggccgccagtttctcttccgctggaccgtgaactggcgtttcctccccga 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131583546 gtttgaccttggccgccagtttctcttccgctggaccgtgaactggcgtttcctccccga 131583487
Query: 859 agcgcttttcctgcatcgtgccttccacctggcacttttgactgcccacctcaccctgct 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131583486 agcgcttttcctgcatcgtgccttccacctggcacttttgactgcccacctcaccctgct 131583427
Query: 919 gttgctctttaccctctgcaggtggcacagg 949
|||||||||||||||||||||||||||||||
Sbjct: 131583426 gttgctctttaccctctgcaggtggcacagg 131583396
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Minus
Query: 3 ggtgcaccatcaagatggcggcgagcctgcggaaacgcggccgggcaggtcccgcagccc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131587978 ggtgcaccatcaagatggcggcgagcctgcggaaacgcggccgggcaggtcccgcagccc 131587919
Query: 63 tggcggcgggacagtgcgggcaatggctgcggcgcgcctggcaagagcggcgcctactac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131587918 tggcggcgggacagtgcgggcaatggctgcggcgcgcctggcaagagcggcgcctactac 131587859
Query: 123 tgctggagccacgctacacgctgctggtggccgcctgcctctgcttggcggaggtgggca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131587858 tgctggagccacgctacacgctgctggtggccgcctgcctctgcttggcggaggtgggca 131587799
Query: 183 tcaccttctgggtcattcacagggtggcat 212
||||||||||||||||||||||||||||||
Sbjct: 131587798 tcaccttctgggtcattcacagggtggcat 131587769
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Minus
Query: 459 aggtacctcccttcgtctttttcttcatgtgctgtgcctcttaccgtgtccactccatct 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131584997 aggtacctcccttcgtctttttcttcatgtgctgtgcctcttaccgtgtccactccatct 131584938
Query: 519 tcgtgctgcggctcttcaacgacccagtggccatggcactgctcttcctcagtatcaacc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131584937 tcgtgctgcggctcttcaacgacccagtggccatggcactgctcttcctcagtatcaacc 131584878
Query: 579 tcctgctggcccagcgctggggctggggctgctgctgtttcag 621
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131584877 tcctgctggcccagcgctggggctggggctgctgctgtttcag 131584835
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 313 gtacccagccggctttgtgtatatctttatggggctatactatgctacgggccggggcac 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131585252 gtacccagccggctttgtgtatatctttatggggctatactatgctacgggccggggcac 131585193
Query: 373 tgacatccgcacggcccagcacatctttgctgtgctctacctggccaccttgctgcttgt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131585192 tgacatccgcacggcccagcacatctttgctgtgctctacctggccaccttgctgcttgt 131585133
Query: 433 cttcttgatttaccaccagacctgcaaggt 462
||||||||||||||||||||||||||||||
Sbjct: 131585132 cttcttgatttaccaccagacctgcaaggt 131585103
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 619 cagcctggcggtgtctgtgaagatgaacgtgctactctttgcccctgggttactgttcct 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131584371 cagcctggcggtgtctgtgaagatgaacgtgctactctttgcccctgggttactgttcct 131584312
Query: 679 tctcctcacacaattcggcctccgtggggccctccccaagctgggcatctgtgctgtcct 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131584311 tctcctcacacaattcggcctccgtggggccctccccaagctgggcatctgtgctgtcct 131584252
Query: 739 tcaggt 744
||||||
Sbjct: 131584251 tcaggt 131584246
Score = 248 bits (125), Expect = 6e-63
Identities = 141/145 (97%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 1025 cagattgtttctaccctcttcacctccaacttcattggcatctgcttcacccggtcgctt 1084
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 131582347 cagattgtttctaccctcttcacctccaacttcattggcatctgcttcagccggtcgctt 131582288
Query: 1085 cactaccagttctacgtctggtatttccacacactgccctacctcctggtggccacg-ct 1143
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 131582287 cactaccagttctacgtctggtatttccacacactgccctacctcctgtgggccacgcct 131582228
Query: 1144 gcacgctggctcacacatctgctca 1168
|||||||||||||||||||||||||
Sbjct: 131582227 gcacgctggctcacacatctgctca 131582203
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 213 atacagagattgactggaaggcctacatggctgaggtggagggcgtcatcaatggcacct 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131585450 atacagagattgactggaaggcctacatggctgaggtggagggcgtcatcaatggcacct 131585391
Query: 273 atgactatactcaactgcagggcgacactggacctcttgtgt 314
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131585390 atgactatactcaactgcagggcgacactggacctcttgtgt 131585349
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 946 caggacaggggaaagtatcctgtcgctgctgaaggatccctccaaaaggaaggttccacc 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131583244 caggacaggggaaagtatcctgtcgctgctgaaggatccctccaaaaggaaggttccacc 131583185
Query: 1006 ccaacccctcactcccaatca 1026
|||||||||||||||||||||
Sbjct: 131583184 ccaacccctcactcccaatca 131583164
Score = 123 bits (62), Expect = 2e-25
Identities = 69/70 (98%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 459 aggtacctcccttcgtctttttcttcatgtgctgtgcctcttaccgtgtccactccatct 518
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 187447140 aggtacctcccttcgtctttttcttcatgtgctgtgcctcttaccg-gtccactccatct 187447198
Query: 519 tcgtgctgcg 528
||||||||||
Sbjct: 187447199 tcgtgctgcg 187447208
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,564,068
Number of extensions: 253
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 9
Length of query: 1188
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1167
Effective length of database: 2,808,413,156
Effective search space: 3277418153052
Effective search space used: 3277418153052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)