Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008254
(956 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030504.1| serine incorporator 1 [Bos taurus]. 474 e-134
Alignment gi|XP_002688817.1| PREDICTED: serine incorporator 1-like [Bos t... 446 e-125
Alignment gi|XP_001249312.1| PREDICTED: serine incorporator 1-like [Bos t... 446 e-125
Alignment gi|NP_001076881.1| serine incorporator 3 [Bos taurus]. 319 3e-87
Alignment gi|XP_002685708.1| PREDICTED: SERINC2 protein-like [Bos taurus]. 240 2e-63
Alignment gi|NP_001030362.1| serine incorporator 2 [Bos taurus]. 208 5e-54
Alignment gi|XP_002690506.1| PREDICTED: serine incorporator 5-like [Bos t... 174 8e-44
Alignment gi|XP_580814.3| PREDICTED: developmentally regulated protein TP... 174 8e-44
>ref|NP_001030504.1| serine incorporator 1 [Bos taurus].
Length = 453
Score = 474 bits (1219), Expect = e-134
Identities = 233/279 (83%), Positives = 237/279 (84%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKG+VPCNILVGYKAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGMVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
+HNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 IHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
SWVEKMEEGNSRCWYAALLSATALN THPASCAENKAFISVNMLLC
Sbjct: 181 SWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVYYTHPASCAENKAFISVNMLLC 240
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
GASIMSILPKIQESQPRSGLLQSSVITVYTMY TWSA+
Sbjct: 241 LGASIMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279
>ref|XP_002688817.1| PREDICTED: serine incorporator 1-like [Bos taurus].
Length = 456
Score = 446 bits (1147), Expect = e-125
Identities = 222/279 (79%), Positives = 228/279 (81%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MGSVLGLCSMASWIPCLCGSA CLLCRCCPSGNNSTVTRLIYALFLLVG+C+A VMLIPG
Sbjct: 1 MGSVLGLCSMASWIPCLCGSALCLLCRCCPSGNNSTVTRLIYALFLLVGMCIASVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNK GFCENEKG+VPCNIL G KAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKTSGFCENEKGMVPCNILFGCKAVYRLCFGLAMFYLLLTLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
+HNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 IHNGFWFFKFAAAIAIITGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
SWV KMEEGNSRCWYAALLSATA N THPASCAENKAFISVNMLLC
Sbjct: 181 SWVVKMEEGNSRCWYAALLSATAPNYLLSLVAIILFFVYYTHPASCAENKAFISVNMLLC 240
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
ASIMSILPKIQESQPRSGLLQSSVITVYTMY TWSA+
Sbjct: 241 LDASIMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279
>ref|XP_001249312.1| PREDICTED: serine incorporator 1-like [Bos taurus].
Length = 456
Score = 446 bits (1147), Expect = e-125
Identities = 222/279 (79%), Positives = 228/279 (81%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MGSVLGLCSMASWIPCLCGSA CLLCRCCPSGNNSTVTRLIYALFLLVG+C+A VMLIPG
Sbjct: 1 MGSVLGLCSMASWIPCLCGSALCLLCRCCPSGNNSTVTRLIYALFLLVGMCIASVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNK GFCENEKG+VPCNIL G KAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKTSGFCENEKGMVPCNILFGCKAVYRLCFGLAMFYLLLTLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
+HNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 IHNGFWFFKFAAAIAIITGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
SWV KMEEGNSRCWYAALLSATA N THPASCAENKAFISVNMLLC
Sbjct: 181 SWVVKMEEGNSRCWYAALLSATAPNYLLSLVAIILFFVYYTHPASCAENKAFISVNMLLC 240
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
ASIMSILPKIQESQPRSGLLQSSVITVYTMY TWSA+
Sbjct: 241 LDASIMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279
>ref|NP_001076881.1| serine incorporator 3 [Bos taurus].
Length = 472
Score = 319 bits (817), Expect = 3e-87
Identities = 157/287 (54%), Positives = 186/287 (64%), Gaps = 7/287 (2%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLG+ S+ASW+PCLCG A CLLC CCP+ NST+TRLIYA L +G V C+M G
Sbjct: 1 MGAVLGVFSLASWVPCLCGGASCLLCSCCPNSKNSTLTRLIYAFILFLGTIVCCIMFHEG 60
Query: 292 MEEQLNKIPGFCENEKGV-------VPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKS 450
ME QL KIPGFC+ C++LV YKAVYR+ F LA+F M+ VK+
Sbjct: 61 METQLKKIPGFCDEGLSTRITDIMDKECDVLVRYKAVYRISFALAVFFFAFSLLMLNVKT 120
Query: 451 SSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLID 630
S DPRAA+HNG P G F T WF +GM GA FILIQLVLL+D
Sbjct: 121 SKDPRAAIHNGFWFFKIAAIVGVMVGSFYIPGGHFNTAWFVIGMVGAAFFILIQLVLLVD 180
Query: 631 FAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFI 810
FAHSWNESWV +MEEGN +CWYAALLS T+L T P C ENK FI
Sbjct: 181 FAHSWNESWVNRMEEGNPKCWYAALLSVTSLFYILSIIFAGLLYTYYTKPDGCTENKFFI 240
Query: 811 SVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
S N++LC S++SI PKIQE QPRSGLLQSS+IT+YTMY TWSA++
Sbjct: 241 SFNLILCVVISVLSIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMS 287
>ref|XP_002685708.1| PREDICTED: SERINC2 protein-like [Bos taurus].
Length = 348
Score = 240 bits (612), Expect = 2e-63
Identities = 119/261 (45%), Positives = 157/261 (60%), Gaps = 8/261 (3%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+ LG CS+ S CLCGSAPC+LC CCP +NST++RL + +FL +GV V +ML PG
Sbjct: 1 MGACLGACSLLSCASCLCGSAPCILCSCCPCSHNSTLSRLFFTVFLFLGVLVCVIMLSPG 60
Query: 292 MEEQLNKIPGFCENE--------KGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVK 447
+E QL K+P C NE +G + C L+G++AVYR+CF +A F M+ V+
Sbjct: 61 VESQLYKLPWVC-NEGTGSHVVLQGHIDCGSLLGHRAVYRMCFAMAAFFFLFSLLMVCVR 119
Query: 448 SSSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLI 627
SS DPRAA+ NG P+G+F+ +WFY G+ G+F F+LIQL+LLI
Sbjct: 120 SSRDPRAAIQNGFWFFKFLIFVGITVGAFYIPDGSFSNIWFYFGVVGSFIFLLIQLLLLI 179
Query: 628 DFAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAF 807
DFAHSWN+ W+ K EE +SR WYA L T L T P +C E K F
Sbjct: 180 DFAHSWNQRWLCKAEECDSRAWYAGLFFFTLLFYALSITAVALLFVYYTQPGACYEGKVF 239
Query: 808 ISVNMLLCFGASIMSILPKIQ 870
I +N+ LC SI++ILPKIQ
Sbjct: 240 IGLNLTLCVCVSIVAILPKIQ 260
>ref|NP_001030362.1| serine incorporator 2 [Bos taurus].
Length = 397
Score = 208 bits (530), Expect = 5e-54
Identities = 105/232 (45%), Positives = 139/232 (59%), Gaps = 7/232 (3%)
Frame = +1
Query: 277 MLIPGMEEQLNKIPGFCENE-------KGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXM 435
ML PG+E QL K+P C +G + C L+G++AVYR+CF +A F M
Sbjct: 1 MLSPGVESQLYKLPWVCNEGTGSHVVLQGHIDCGSLLGHRAVYRMCFAMAAFFFLFSLLM 60
Query: 436 IKVKSSSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQL 615
+ V+SS DPRAA+ NG P+G+F+ +WFY G+ G+F F+LIQL
Sbjct: 61 VCVRSSRDPRAAIQNGFWFFKFLIFVGITVGAFYIPDGSFSNIWFYFGVVGSFIFLLIQL 120
Query: 616 VLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAE 795
+LLIDFAHSWN+ W+ K EE +SR WYA L T L T P +C E
Sbjct: 121 LLLIDFAHSWNQRWLCKAEECDSRAWYAGLFFFTLLFYALSITAVALLFVYYTQPGACYE 180
Query: 796 NKAFISVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
K FI +N+ LC SI++ILPKIQ++QP SGLLQ+SVIT+YTM+ TW AL+
Sbjct: 181 GKVFIGLNLTLCVCVSIVAILPKIQDAQPNSGLLQASVITLYTMFVTWLALS 232
>ref|XP_002690506.1| PREDICTED: serine incorporator 5-like [Bos taurus].
Length = 459
Score = 174 bits (442), Expect = 8e-44
Identities = 97/275 (35%), Positives = 139/275 (50%), Gaps = 5/275 (1%)
Frame = +1
Query: 142 ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNK-IP 318
A + C CG+A C C C P S TR +YAL+ ++ V + C+M+ + ++ + IP
Sbjct: 7 AGQLACCCGNAGCSYC-CGPKVRQSRSTRFMYALYFILVVIICCIMMSNTVANEMREHIP 65
Query: 319 GF---CENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXX 489
F C+ K C LVGY AVYR+CFG+A F + + +S RA +HNG
Sbjct: 66 YFEDICKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLNINNSKSCRAYIHNGFW 125
Query: 490 XXXXXXXXXXXXXXXXXPEG-TFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEK 666
P+ TF W YVG G F FI+IQL+LL++FAH WN++W
Sbjct: 126 FFKLLLLGAMCSGAFFIPDQETFLNAWRYVGAVGGFLFIVIQLLLLVEFAHKWNKNWTAG 185
Query: 667 MEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASI 846
++ WYA+L T + T C ENK + VN LC S+
Sbjct: 186 T--ATNKLWYASLSLVTLITYSITTGGLIWMAVFYTQKDGCMENKILLGVNGGLCLLMSV 243
Query: 847 MSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
+SI P +++ QP SG+LQS +I+ Y Y T+SAL+
Sbjct: 244 VSISPSVRDRQPHSGILQSGLISCYVTYLTFSALS 278
>ref|XP_580814.3| PREDICTED: developmentally regulated protein TPO1 [Bos taurus].
Length = 459
Score = 174 bits (442), Expect = 8e-44
Identities = 97/275 (35%), Positives = 139/275 (50%), Gaps = 5/275 (1%)
Frame = +1
Query: 142 ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNK-IP 318
A + C CG+A C C C P S TR +YAL+ ++ V + C+M+ + ++ + IP
Sbjct: 7 AGQLACCCGNAGCSYC-CGPKVRQSRSTRFMYALYFILVVIICCIMMSNTVANEMREHIP 65
Query: 319 GF---CENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXX 489
F C+ K C LVGY AVYR+CFG+A F + + +S RA +HNG
Sbjct: 66 YFEDICKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLNINNSKSCRAYIHNGFW 125
Query: 490 XXXXXXXXXXXXXXXXXPEG-TFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEK 666
P+ TF W YVG G F FI+IQL+LL++FAH WN++W
Sbjct: 126 FFKLLLLGAMCSGAFFIPDQETFLNAWRYVGAVGGFLFIVIQLLLLVEFAHKWNKNWTAG 185
Query: 667 MEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASI 846
++ WYA+L T + T C ENK + VN LC S+
Sbjct: 186 T--ATNKLWYASLSLVTLITYSITTGGLIWMAVFYTQKDGCMENKILLGVNGGLCLLMSV 243
Query: 847 MSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
+SI P +++ QP SG+LQS +I+ Y Y T+SAL+
Sbjct: 244 VSISPSVRDRQPHSGILQSGLISCYVTYLTFSALS 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,901,968
Number of extensions: 792613
Number of successful extensions: 2558
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2527
Number of HSP's successfully gapped: 8
Length of query: 318
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 216
Effective length of database: 14,306,398
Effective search space: 3090181968
Effective search space used: 3090181968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008254
(956 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863825.1| PREDICTED: similar to tumor differentially expr... 469 e-132
Alignment gi|XP_863781.1| PREDICTED: similar to tumor differentially expr... 469 e-132
Alignment gi|XP_533483.1| PREDICTED: similar to tumor differentially expr... 469 e-132
Alignment gi|XP_863802.1| PREDICTED: similar to tumor differentially expr... 350 9e-97
Alignment gi|XP_534427.2| PREDICTED: similar to Tumor differentially expr... 318 5e-87
Alignment gi|XP_544448.2| PREDICTED: similar to Tumor differentially expr... 271 9e-73
Alignment gi|XP_863756.1| PREDICTED: similar to tumor differentially expr... 208 5e-54
Alignment gi|XP_536311.2| PREDICTED: similar to developmentally regulated... 180 2e-45
Alignment gi|XP_544651.2| PREDICTED: similar to developmentally regulated... 149 5e-36
>ref|XP_863825.1| PREDICTED: similar to tumor differentially expressed 2 isoform 5
[Canis familiaris].
Length = 454
Score = 469 bits (1206), Expect = e-132
Identities = 229/279 (82%), Positives = 237/279 (84%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLGLCS+ASWIPCLCGSAPCLLCRCCPSGN+STVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGNVLGLCSVASWIPCLCGSAPCLLCRCCPSGNHSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKG+VPCNILVGYKAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGIVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
VHNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 VHNGFWFFKFATAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
SWVEKMEEGNSRCWYAALLSATALN THPASC+ENKAFISVNMLLC
Sbjct: 181 SWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFIYYTHPASCSENKAFISVNMLLC 240
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
GAS+MSILPKIQESQPRSGLLQSSVITVYTMY TWSA+
Sbjct: 241 LGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279
>ref|XP_863781.1| PREDICTED: similar to tumor differentially expressed 2 isoform 3
[Canis familiaris].
Length = 409
Score = 469 bits (1206), Expect = e-132
Identities = 229/279 (82%), Positives = 237/279 (84%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLGLCS+ASWIPCLCGSAPCLLCRCCPSGN+STVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGNVLGLCSVASWIPCLCGSAPCLLCRCCPSGNHSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKG+VPCNILVGYKAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGIVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
VHNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 VHNGFWFFKFATAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
SWVEKMEEGNSRCWYAALLSATALN THPASC+ENKAFISVNMLLC
Sbjct: 181 SWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFIYYTHPASCSENKAFISVNMLLC 240
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
GAS+MSILPKIQESQPRSGLLQSSVITVYTMY TWSA+
Sbjct: 241 LGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279
>ref|XP_533483.1| PREDICTED: similar to tumor differentially expressed 2 isoform 1
[Canis familiaris].
Length = 453
Score = 469 bits (1206), Expect = e-132
Identities = 229/279 (82%), Positives = 237/279 (84%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLGLCS+ASWIPCLCGSAPCLLCRCCPSGN+STVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGNVLGLCSVASWIPCLCGSAPCLLCRCCPSGNHSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKG+VPCNILVGYKAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGIVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
VHNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 VHNGFWFFKFATAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
SWVEKMEEGNSRCWYAALLSATALN THPASC+ENKAFISVNMLLC
Sbjct: 181 SWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFIYYTHPASCSENKAFISVNMLLC 240
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
GAS+MSILPKIQESQPRSGLLQSSVITVYTMY TWSA+
Sbjct: 241 LGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279
>ref|XP_863802.1| PREDICTED: similar to tumor differentially expressed 1, like
isoform 4 [Canis familiaris].
Length = 366
Score = 350 bits (899), Expect = 9e-97
Identities = 166/196 (84%), Positives = 171/196 (87%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLGLCS+ASWIPCLCGSAPCLLCRCCPSGN+STVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGNVLGLCSVASWIPCLCGSAPCLLCRCCPSGNHSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKG+VPCNILVGYKAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGIVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
VHNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 VHNGFWFFKFATAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYA 699
SWVEKMEEGNSRCWYA
Sbjct: 181 SWVEKMEEGNSRCWYA 196
>ref|XP_534427.2| PREDICTED: similar to Tumor differentially expressed protein 1
[Canis familiaris].
Length = 474
Score = 318 bits (815), Expect = 5e-87
Identities = 158/275 (57%), Positives = 183/275 (66%), Gaps = 8/275 (2%)
Frame = +1
Query: 151 IPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNKIPGFCE 330
+PCLC A CLLC CCP+ NSTVTRLIYA L +G ++C+ML GME QL KIPGFCE
Sbjct: 15 VPCLCSGASCLLCSCCPNSKNSTVTRLIYAFILFLGAALSCIMLTEGMETQLKKIPGFCE 74
Query: 331 --------NEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGX 486
+ K C++LVGYKAVYR+ F LA+F M+KVK+S DPRAAVHNG
Sbjct: 75 GGFKINMADRKVDKDCDVLVGYKAVYRINFALAIFFFVFSLLMLKVKTSKDPRAAVHNGF 134
Query: 487 XXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEK 666
P G FTT WF VGM GAF FILIQLVLL+DFAHSWNESWV +
Sbjct: 135 WFFKIAAIVGIMVGSFYIPGGHFTTAWFIVGMVGAFLFILIQLVLLVDFAHSWNESWVSR 194
Query: 667 MEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASI 846
MEEGN RCWYAALLS T++ T P C ENK FIS+N++LCF SI
Sbjct: 195 MEEGNPRCWYAALLSVTSICYILSVVFVGLLYTYYTKPDGCTENKFFISINLILCFVVSI 254
Query: 847 MSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
+SI PKIQE QPRSGLLQSS+IT+YTMY TWSA++
Sbjct: 255 ISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMS 289
>ref|XP_544448.2| PREDICTED: similar to Tumor differentially expressed 2-like [Canis
familiaris].
Length = 462
Score = 271 bits (692), Expect = 9e-73
Identities = 134/272 (49%), Positives = 169/272 (62%), Gaps = 7/272 (2%)
Frame = +1
Query: 157 CLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNKIPGFCENE 336
CLCGSAPC+LC CCPS NSTVTRLI+ FL +GV V+ +ML PG+E QL K+P CE
Sbjct: 24 CLCGSAPCILCGCCPSSPNSTVTRLIFTAFLFLGVLVSVIMLSPGVESQLYKLPWVCEEG 83
Query: 337 KGV-------VPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXXXX 495
G + C L+G++AVYR+CF A F MI V+SS DPRAA+ NG
Sbjct: 84 AGTSIILQGHIDCGSLLGHRAVYRMCFATAAFFFLFTLLMICVRSSRDPRAAIQNGFWFF 143
Query: 496 XXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEE 675
P+G+F+ VWFY G+ G+F FILIQLVL IDFAHSWN+ W+ K EE
Sbjct: 144 KFLILVGITVGAFYIPDGSFSDVWFYFGVVGSFLFILIQLVLFIDFAHSWNQRWLGKAEE 203
Query: 676 GNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASIMSI 855
+SR WYA L T L T P +C E K FI +N+ LC SI+++
Sbjct: 204 CDSRAWYAGLFFFTLLFYTLSIAAVTLLFIYYTQPGTCYEGKIFIGLNLTLCVCVSIVAV 263
Query: 856 LPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
LPK+Q++QP SGLLQ+SVIT+YTM+ TW AL+
Sbjct: 264 LPKVQDAQPNSGLLQASVITLYTMFVTWLALS 295
>ref|XP_863756.1| PREDICTED: similar to tumor differentially expressed 2 isoform 2
[Canis familiaris].
Length = 297
Score = 208 bits (530), Expect = 5e-54
Identities = 103/123 (83%), Positives = 106/123 (86%)
Frame = +1
Query: 580 MAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXX 759
MAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALN
Sbjct: 1 MAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLF 60
Query: 760 XXXXTHPASCAENKAFISVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTW 939
THPASC+ENKAFISVNMLLC GAS+MSILPKIQESQPRSGLLQSSVITVYTMY TW
Sbjct: 61 FIYYTHPASCSENKAFISVNMLLCLGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTW 120
Query: 940 SAL 948
SA+
Sbjct: 121 SAM 123
>ref|XP_536311.2| PREDICTED: similar to developmentally regulated protein TPO1 [Canis
familiaris].
Length = 461
Score = 180 bits (456), Expect = 2e-45
Identities = 102/276 (36%), Positives = 140/276 (50%), Gaps = 6/276 (2%)
Frame = +1
Query: 142 ASWIPCLCGSAPC-LLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLN-KI 315
A + C CGSA C L C CCP S TR +YAL+ ++ V + CVM+ + ++ +I
Sbjct: 7 AGQLACCCGSAGCSLCCGCCPKIRQSRSTRFMYALYFILVVLICCVMMSKTVANEMKERI 66
Query: 316 PGF---CENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGX 486
P + C+ K C LVGY AVYR+CFG+A F + + SS RA +HNG
Sbjct: 67 PFYEDICKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLNISSSKGCRAHIHNGF 126
Query: 487 XXXXXXXXXXXXXXXXXXPEG-TFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVE 663
P+ TF W YVG G F FI IQL+LL++FAH WN++W
Sbjct: 127 WFFKLLLLGAMCSGAFFIPDQETFLNAWRYVGAIGGFIFIGIQLILLVEFAHKWNKNWTA 186
Query: 664 KMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGAS 843
+++ WYAAL T + T C ENK + +N LC S
Sbjct: 187 GT--ASNKLWYAALALVTLIMYSIATGGLILMAVFYTQKDGCLENKILLGLNGGLCLLIS 244
Query: 844 IMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
+++I P +Q QP SGLLQS +I+ Y Y T+SAL+
Sbjct: 245 VVAISPCVQNRQPHSGLLQSGLISCYVTYLTFSALS 280
>ref|XP_544651.2| PREDICTED: similar to developmentally regulated protein TPO1 [Canis
familiaris].
Length = 511
Score = 149 bits (375), Expect = 5e-36
Identities = 92/273 (33%), Positives = 126/273 (46%), Gaps = 10/273 (3%)
Frame = +1
Query: 163 CGSAPCLLCRC---CPSGNNSTVTRLIYALFLLVGVCVACVML-------IPGMEEQLNK 312
C PC C C P S +RL Y L L + C++L I G +
Sbjct: 37 CEPVPCT-CSCHSRWPLVTESACSRLFYILLHLGSSAICCLLLSRTVMERIWGKAHGIQM 95
Query: 313 IPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXXX 492
G C + G C +L G AVYR+C G A FH ++++ S S RA +HN
Sbjct: 96 PSGLCVHLFGYTHCPVLSGSGAVYRVCAGTATFHLLQAMLLVQLHSPSSLRAQLHNSFWI 155
Query: 493 XXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKME 672
P+ W Y+G+ G F FIL+QLVL+ FAHSWN++W +
Sbjct: 156 LKLLFLLGLCAVAFCIPDEHLFPAWHYIGICGGFTFILLQLVLITAFAHSWNKNW--QTG 213
Query: 673 EGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASIMS 852
W+ A+L A THPA C NK +S+++ C S +S
Sbjct: 214 AAQDCRWFLAVLLAALGFYTMAGVAAVLLFHHYTHPAGCLLNKTLLSLHLCFCGLLSFLS 273
Query: 853 ILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
I P I+ QPRSGLLQ+S+I+ Y MY T+SAL+
Sbjct: 274 IAPCIRLKQPRSGLLQASIISCYIMYLTFSALS 306
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,017,953
Number of extensions: 796046
Number of successful extensions: 2442
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2412
Number of HSP's successfully gapped: 9
Length of query: 318
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 215
Effective length of database: 15,440,896
Effective search space: 3319792640
Effective search space used: 3319792640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008254
(956 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926721.3| PREDICTED: serine incorporator 3 [Sus scrofa]. 320 1e-87
Alignment gi|XP_003356321.1| PREDICTED: serine incorporator 2-like [Sus s... 256 1e-68
Alignment gi|XP_003121282.2| PREDICTED: serine incorporator 1-like [Sus s... 249 1e-66
Alignment gi|XP_003121278.2| PREDICTED: serine incorporator 1-like [Sus s... 249 1e-66
Alignment gi|XP_001928210.2| PREDICTED: serine incorporator 4 [Sus scrofa]. 145 2e-35
Alignment gi|XP_003354250.1| PREDICTED: serine incorporator 5-like [Sus s... 125 3e-29
Alignment gi|XP_003354251.1| PREDICTED: serine incorporator 5-like [Sus s... 90 2e-18
Alignment gi|XP_003123794.2| PREDICTED: serine incorporator 5-like, parti... 63 3e-10
>ref|XP_001926721.3| PREDICTED: serine incorporator 3 [Sus scrofa].
Length = 474
Score = 320 bits (819), Expect = 1e-87
Identities = 163/288 (56%), Positives = 189/288 (65%), Gaps = 8/288 (2%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLG+ S+ASW+PCLCG A CLLC CCP+ NST+TRLIYA L +G V C+M G
Sbjct: 1 MGAVLGVFSLASWVPCLCGGASCLLCGCCPNSKNSTLTRLIYAFILFLGTIVCCIMFHEG 60
Query: 292 MEEQLNKIPGFC-ENEKGVV-------PCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVK 447
+E QL KIPGFC E K V C++LV YKAVYR+ F LA+F M+KVK
Sbjct: 61 VETQLKKIPGFCDEGLKTKVADINMDKDCDVLVRYKAVYRINFALAIFFFAFSLLMLKVK 120
Query: 448 SSSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLI 627
+S DPRAA+HNG P G FTT WF +GM GA FILIQLVLL+
Sbjct: 121 TSKDPRAAIHNGFWFFKIAAIIGIMVGSFYIPGGHFTTAWFIIGMVGAAFFILIQLVLLV 180
Query: 628 DFAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAF 807
DFAHSWNESWV KMEEGN RCWYAALLS T+ T P C ENK F
Sbjct: 181 DFAHSWNESWVNKMEEGNPRCWYAALLSFTSFCYILSIVFVALLYSYYTKPDGCTENKFF 240
Query: 808 ISVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
IS N++LC SI+SI PKIQE QPRSGLLQSSVIT+YT+Y TWSA++
Sbjct: 241 ISFNLILCVVVSIISIHPKIQEHQPRSGLLQSSVITLYTIYLTWSAMS 288
>ref|XP_003356321.1| PREDICTED: serine incorporator 2-like [Sus scrofa].
Length = 324
Score = 256 bits (654), Expect = 1e-68
Identities = 126/268 (47%), Positives = 168/268 (62%), Gaps = 7/268 (2%)
Frame = +1
Query: 169 SAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNKIPGFCENE---- 336
SAPC+LC CCP +NST++RLI+ FL +G ++ +ML PG+E QL K+P CE
Sbjct: 6 SAPCILCSCCPCSHNSTLSRLIFTAFLFLGELLSIIMLSPGVESQLYKLPWVCEEGTGST 65
Query: 337 ---KGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXXXXXXXX 507
+G + C L+G++AVYR+CF +A F MI V+SS DPRAA+ NG
Sbjct: 66 VILQGHIDCGSLLGHRAVYRMCFAMAAFFFLFTLLMICVRSSRDPRAAIQNGFWFFKFLI 125
Query: 508 XXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSR 687
P+G+F+ +WFY G+AG+F F LIQLVLLIDFAHSWN+ W+ K EE +SR
Sbjct: 126 FVGITVGAFYIPDGSFSNIWFYFGVAGSFVFFLIQLVLLIDFAHSWNQRWLGKAEECDSR 185
Query: 688 CWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASIMSILPKI 867
WYA L T L T P +C E+K FI +N+ LC SI+++LPKI
Sbjct: 186 AWYAGLFFFTLLFYALSITAVALLFVYYTQPDACYESKVFIGLNLTLCVCVSIVAVLPKI 245
Query: 868 QESQPRSGLLQSSVITVYTMYFTWSALN 951
Q++QP SGLLQ+SVIT+YTM+ TW AL+
Sbjct: 246 QDAQPNSGLLQASVITLYTMFVTWLALS 273
>ref|XP_003121282.2| PREDICTED: serine incorporator 1-like [Sus scrofa].
Length = 206
Score = 249 bits (637), Expect = 1e-66
Identities = 118/124 (95%), Positives = 118/124 (95%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFH MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNG 483
VHNG
Sbjct: 121 VHNG 124
>ref|XP_003121278.2| PREDICTED: serine incorporator 1-like [Sus scrofa].
Length = 124
Score = 249 bits (637), Expect = 1e-66
Identities = 118/124 (95%), Positives = 118/124 (95%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFH MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNG 483
VHNG
Sbjct: 121 VHNG 124
>ref|XP_001928210.2| PREDICTED: serine incorporator 4 [Sus scrofa].
Length = 518
Score = 145 bits (367), Expect = 2e-35
Identities = 90/272 (33%), Positives = 125/272 (45%), Gaps = 9/272 (3%)
Frame = +1
Query: 163 CGSAPCLLCRCC--PSGNNSTVTRLIYALFLLVGVCVACVML-------IPGMEEQLNKI 315
CG C CR P S + L Y L + V C++L + G +
Sbjct: 38 CGPVSCTCCRHSRWPPLTESPCSGLFYILLHVGASAVCCLLLSRTVVERVWGKARGIQMP 97
Query: 316 PGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXXXX 495
G C + G C +L G AVYR+C G A FH ++ + S + RA +HN
Sbjct: 98 SGLCAHLFGHSHCPVLSGSGAVYRVCAGTATFHLLQAVLLVHLHSPTSLRAQLHNSFWVL 157
Query: 496 XXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEE 675
P+ VW Y+G+ G F FIL+QLVL+ FAHSWN++W +
Sbjct: 158 KLLFLLGLCAVAFCIPDEHLFPVWHYIGICGGFTFILLQLVLITAFAHSWNKNW--QTGA 215
Query: 676 GNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASIMSI 855
W+ A+L T THPA C NK +S+++ C S +SI
Sbjct: 216 AQDCRWFLAVLLTTLGFYSMAGVAAVLLFRHYTHPAGCLLNKMLLSLHLCFCGLLSFLSI 275
Query: 856 LPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
P I+ QPRSGLLQ+S+I+ Y MY T+SAL+
Sbjct: 276 APCIRLKQPRSGLLQASIISCYIMYLTFSALS 307
>ref|XP_003354250.1| PREDICTED: serine incorporator 5-like [Sus scrofa].
Length = 218
Score = 125 bits (314), Expect = 3e-29
Identities = 70/186 (37%), Positives = 95/186 (51%), Gaps = 12/186 (6%)
Frame = +1
Query: 136 SMASWIP------CLCGSAPC-LLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGM 294
S A W P C CG+A C C CCP S TR +YAL+ ++ V + C+M+ +
Sbjct: 24 SAAPWRPGALQLACCCGNAGCSFCCGCCPKIRQSRSTRFMYALYFILVVILCCIMMSNTV 83
Query: 295 EEQLN-KIPGF---CENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDP 462
++ +IP F C+ K C LVGY AVYR+CFG+A F +KV +S
Sbjct: 84 ANEMRERIPFFEDICKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKVNNSKSC 143
Query: 463 RAAVHNGXXXXXXXXXXXXXXXXXXXP-EGTFTTVWFYVGMAGAFCFILIQLVLLIDFAH 639
RA +HNG P + TF W YVG G F FI IQL+L+++FAH
Sbjct: 144 RAYIHNGFWFFKLLLLGAMCSGAFFIPDQETFLNAWRYVGAIGGFLFIGIQLLLIVEFAH 203
Query: 640 SWNESW 657
WN++W
Sbjct: 204 KWNKNW 209
>ref|XP_003354251.1| PREDICTED: serine incorporator 5-like [Sus scrofa].
Length = 211
Score = 89.7 bits (221), Expect = 2e-18
Identities = 51/130 (39%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Frame = +1
Query: 280 LIPGMEEQLNKIPGF---CENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKS 450
L PG + IP F C+ K C LVGY AVYR+CFG+A F +KV +
Sbjct: 75 LTPGSPSR--SIPFFEDICKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKVNN 132
Query: 451 SSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEG-TFTTVWFYVGMAGAFCFILIQLVLLI 627
S RA +HNG P+ TF W YVG G F FI IQL+L++
Sbjct: 133 SKSCRAYIHNGFWFFKLLLLGAMCSGAFFIPDQETFLNAWRYVGAIGGFLFIGIQLLLIV 192
Query: 628 DFAHSWNESW 657
+FAH WN++W
Sbjct: 193 EFAHKWNKNW 202
>ref|XP_003123794.2| PREDICTED: serine incorporator 5-like, partial [Sus scrofa].
Length = 279
Score = 62.8 bits (151), Expect = 3e-10
Identities = 33/90 (36%), Positives = 46/90 (51%)
Frame = +1
Query: 682 SRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASIMSILP 861
++ WYA L T + T C ENK + VN LC S+++I P
Sbjct: 9 NKLWYACLSLVTLIMYSIATGGLILMAVFYTQKDGCMENKILLGVNGGLCLLISVVAISP 68
Query: 862 KIQESQPRSGLLQSSVITVYTMYFTWSALN 951
+Q+ QP SGLLQS +I+ Y Y T+SAL+
Sbjct: 69 CVQDRQPHSGLLQSGLISCYVTYLTFSALS 98
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,049,082
Number of extensions: 499605
Number of successful extensions: 1652
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1639
Number of HSP's successfully gapped: 8
Length of query: 318
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,879,129
Effective search space: 1944529251
Effective search space used: 1944529251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008254
(956 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062734.1| serine incorporator 1 [Mus musculus]. 473 e-134
Alignment gi|NP_036162.3| serine incorporator 3 [Mus musculus]. 316 1e-86
Alignment gi|NP_766290.2| serine incorporator 2 [Mus musculus]. 276 2e-74
Alignment gi|NP_766176.1| serine incorporator 5 [Mus musculus]. 176 3e-44
Alignment gi|NP_001020542.1| serine incorporator 4 [Mus musculus]. 139 3e-33
>ref|NP_062734.1| serine incorporator 1 [Mus musculus].
Length = 453
Score = 473 bits (1218), Expect = e-134
Identities = 233/279 (83%), Positives = 237/279 (84%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MGSVLGLCS+ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGSVLGLCSVASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
VHNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 VHNGFWFFKFATAVAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
SWVEKMEEGNSRCWYAALLSATALN THPASCAENKAFISVNMLLC
Sbjct: 181 SWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVYYTHPASCAENKAFISVNMLLC 240
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
GAS+MSILPKIQESQPRSGLLQSSVITVYTMY TWSA+
Sbjct: 241 IGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279
>ref|NP_036162.3| serine incorporator 3 [Mus musculus].
Length = 472
Score = 316 bits (810), Expect = 1e-86
Identities = 155/287 (54%), Positives = 188/287 (65%), Gaps = 8/287 (2%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLG+ S+ASW+PCLC A CLLC CCP NSTVTRLIYA L +G V+C+M+ G
Sbjct: 1 MGAVLGVFSLASWVPCLCSGASCLLCSCCPISKNSTVTRLIYAFILFLGTIVSCIMMTEG 60
Query: 292 MEEQLNKIPGFCE--------NEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVK 447
++ QL KIPGFCE + K C++LVG+KAVYR+ F +A+F M+KVK
Sbjct: 61 IQTQLKKIPGFCEGGFQIKMVDTKAEKDCDVLVGFKAVYRINFAVAIFFFAFFLLMLKVK 120
Query: 448 SSSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLI 627
+S DPRAAVHNG P G+FT VWF GM GA FI+IQLVLL+
Sbjct: 121 TSKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFIIIQLVLLV 180
Query: 628 DFAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAF 807
D AHSWNE WV +MEEGN R WYAALLS T+L T P C ENK F
Sbjct: 181 DMAHSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLYVFYTKPDDCTENKVF 240
Query: 808 ISVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
IS+N++ C SI+SILPK+QE QPRSGLLQSS+IT+YT+Y TWSA+
Sbjct: 241 ISLNLIFCVAVSIVSILPKVQEHQPRSGLLQSSIITLYTLYLTWSAM 287
>ref|NP_766290.2| serine incorporator 2 [Mus musculus].
Length = 450
Score = 276 bits (705), Expect = 2e-74
Identities = 135/287 (47%), Positives = 178/287 (62%), Gaps = 7/287 (2%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+ LG CS+ S CLCGSAPC+LC CCPS NSTV+RL++ FL +GV V+ +ML PG
Sbjct: 1 MGACLGACSLLSCASCLCGSAPCILCGCCPSTRNSTVSRLLFTSFLFLGVLVSIIMLSPG 60
Query: 292 MEEQLNKIPGFCENE-------KGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKS 450
+E QL K+P CE+ +G + C L+G++AVYR+CF A F MI V+S
Sbjct: 61 VESQLYKLPWVCEDRTQQPLVLQGPLDCGSLLGFRAVYRMCFATAAFFFFFMLLMICVRS 120
Query: 451 SSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLID 630
S DPRAA+ NG P+G+F +WFY G+ G+F FILIQL+L +D
Sbjct: 121 SRDPRAAIQNGFWFFKFLILVGITVGAFYIPDGSFPKIWFYFGVVGSFLFILIQLILFVD 180
Query: 631 FAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFI 810
FAHSWN+ W+ K EE +S WYA L T L T +C E K FI
Sbjct: 181 FAHSWNQRWLCKAEECDSPAWYAGLFFFTFLFYLLSIAAVALMFVYYTESGACHEGKVFI 240
Query: 811 SVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
S+N+ C SI+++LPK+Q++QP SGLLQ+SVIT+YTM+ TWSAL+
Sbjct: 241 SLNLTFCVCVSIIAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALS 287
>ref|NP_766176.1| serine incorporator 5 [Mus musculus].
Length = 461
Score = 176 bits (445), Expect = 3e-44
Identities = 101/276 (36%), Positives = 140/276 (50%), Gaps = 7/276 (2%)
Frame = +1
Query: 142 ASWIPCLCGSAPC-LLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQL-NKI 315
A + C CGSA C L C CCP S TR +Y + ++ + + CVM+ P + +Q+ + I
Sbjct: 7 AGQLACCCGSAGCSLCCGCCPKFRQSRTTRFMYLFYFILVIALCCVMMTPSVMKQVKDHI 66
Query: 316 PGFCE----NEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNG 483
P F E + G C LVGY AVYR+CFG+A F +KV +S RA +HNG
Sbjct: 67 PFFEEFCKKTQAGGDACENLVGYSAVYRVCFGMACFFALFCLLTLKVNNSKSCRAYIHNG 126
Query: 484 XXXXXXXXXXXXXXXXXXXPEG-TFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWV 660
P+ TF VW YVG G+F FI IQL+L++ FAH WN++W
Sbjct: 127 FWFFKLLLLGAMCSGAFFIPDQETFLKVWRYVGAGGSFLFICIQLLLIVQFAHKWNKNWT 186
Query: 661 EKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGA 840
++ WYA+L T + T C +NK + V+ LC
Sbjct: 187 AGTV--RNKLWYASLSLVTLIMYSVAVGGLALMAVFYTQWDDCMDNKILLGVHGGLCVLI 244
Query: 841 SIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
S+++I P +Q QP SGLLQS +I+ Y Y T+SAL
Sbjct: 245 SLVAISPCVQNRQPHSGLLQSGLISCYVTYLTFSAL 280
>ref|NP_001020542.1| serine incorporator 4 [Mus musculus].
Length = 492
Score = 139 bits (350), Expect = 3e-33
Identities = 84/259 (32%), Positives = 124/259 (47%), Gaps = 7/259 (2%)
Frame = +1
Query: 196 CPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQL-NKIPGF------CENEKGVVPC 354
C S S +RL+Y L + + C++L + E++ K G C + G C
Sbjct: 46 CHSLTESRCSRLLYILLHVGASAICCLLLSKTVVERVWGKAHGIQMPSVLCAHLFGSSDC 105
Query: 355 NILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXXXXXXXXXXXXXXXXX 534
+L G AVYR+C G A FH ++++ S ++PRA +HN
Sbjct: 106 PVLSGSGAVYRVCAGTATFHLLQAVLLVRLHSPTNPRAQLHNSFWSLKLLFLLGLCVVAF 165
Query: 535 XXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSA 714
P+ W Y+G+ G F FIL+QLVL+ FA SWN++W + S W + A
Sbjct: 166 CIPDEDLFPAWHYIGICGGFTFILLQLVLITAFAQSWNKNWQTGAAQDCS--WLLGVSLA 223
Query: 715 TALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASIMSILPKIQESQPRSGL 894
T THP C NK +S+++ C S++SI P I+ QP SGL
Sbjct: 224 TLGFYSMAGVGAVLLFHQYTHPDGCLLNKMLLSLHLCFCGLLSLLSIAPCIRRKQPNSGL 283
Query: 895 LQSSVITVYTMYFTWSALN 951
LQ+S+I+ Y MY T+SAL+
Sbjct: 284 LQASIISCYIMYLTFSALS 302
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,195,595
Number of extensions: 704690
Number of successful extensions: 2441
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2417
Number of HSP's successfully gapped: 5
Length of query: 318
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 217
Effective length of database: 12,583,923
Effective search space: 2730711291
Effective search space used: 2730711291
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008254
(956 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065806.1| serine incorporator 1 [Homo sapiens]. 473 e-134
Alignment gi|NP_945179.1| serine incorporator 3 [Homo sapiens]. 306 1e-83
Alignment gi|NP_006802.1| serine incorporator 3 [Homo sapiens]. 306 1e-83
Alignment gi|NP_849196.2| serine incorporator 2 isoform 1 [Homo sapiens]. 289 2e-78
Alignment gi|NP_061035.2| serine incorporator 2 isoform 2 [Homo sapiens]. 276 2e-74
Alignment gi|NP_001185967.1| serine incorporator 2 isoform 4 [Homo sapien... 276 2e-74
Alignment gi|NP_001185966.1| serine incorporator 2 isoform 3 [Homo sapien... 276 2e-74
Alignment gi|NP_001185968.1| serine incorporator 2 isoform 5 [Homo sapien... 216 2e-56
Alignment gi|NP_001167543.1| serine incorporator 5 isoform 1 [Homo sapien... 182 4e-46
Alignment gi|NP_840060.1| serine incorporator 5 isoform 2 [Homo sapiens]. 182 4e-46
>ref|NP_065806.1| serine incorporator 1 [Homo sapiens].
Length = 453
Score = 473 bits (1218), Expect = e-134
Identities = 233/279 (83%), Positives = 237/279 (84%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG
Sbjct: 1 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 60
Query: 292 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMF+ MIKVKSSSDPRAA
Sbjct: 61 MEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAA 120
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
VHNG PEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE
Sbjct: 121 VHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 180
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
SWVEKMEEGNSRCWYAALLSATALN THPASC+ENKAFISVNMLLC
Sbjct: 181 SWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFVYYTHPASCSENKAFISVNMLLC 240
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSAL 948
GAS+MSILPKIQESQPRSGLLQSSVITVYTMY TWSA+
Sbjct: 241 VGASVMSILPKIQESQPRSGLLQSSVITVYTMYLTWSAM 279
>ref|NP_945179.1| serine incorporator 3 [Homo sapiens].
Length = 473
Score = 306 bits (785), Expect = 1e-83
Identities = 158/288 (54%), Positives = 186/288 (64%), Gaps = 8/288 (2%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLG+ S+ASW+PCLC A CLLC CCP+ NSTVTRLIYA LL+ V+ +M
Sbjct: 1 MGAVLGVFSLASWVPCLCSGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKE 60
Query: 292 MEEQLNKIPGFCENEKGV--------VPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVK 447
ME L KIPGFCE + C++LVGYKAVYR+ F +A+F M KVK
Sbjct: 61 METYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVK 120
Query: 448 SSSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLI 627
+S D RAAVHNG P G F++VWF VGM GA FILIQLVLL+
Sbjct: 121 TSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLV 180
Query: 628 DFAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAF 807
DFAHSWNESWV +MEEGN R WYAALLS T+ T P C ENK F
Sbjct: 181 DFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFF 240
Query: 808 ISVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
IS+N++LC ASI+SI PKIQE QPRSGLLQSS+IT+YTMY TWSA++
Sbjct: 241 ISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMS 288
>ref|NP_006802.1| serine incorporator 3 [Homo sapiens].
Length = 473
Score = 306 bits (785), Expect = 1e-83
Identities = 158/288 (54%), Positives = 186/288 (64%), Gaps = 8/288 (2%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+VLG+ S+ASW+PCLC A CLLC CCP+ NSTVTRLIYA LL+ V+ +M
Sbjct: 1 MGAVLGVFSLASWVPCLCSGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKE 60
Query: 292 MEEQLNKIPGFCENEKGV--------VPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVK 447
ME L KIPGFCE + C++LVGYKAVYR+ F +A+F M KVK
Sbjct: 61 METYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVK 120
Query: 448 SSSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLI 627
+S D RAAVHNG P G F++VWF VGM GA FILIQLVLL+
Sbjct: 121 TSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLV 180
Query: 628 DFAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAF 807
DFAHSWNESWV +MEEGN R WYAALLS T+ T P C ENK F
Sbjct: 181 DFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDGCTENKFF 240
Query: 808 ISVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
IS+N++LC ASI+SI PKIQE QPRSGLLQSS+IT+YTMY TWSA++
Sbjct: 241 ISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTMYLTWSAMS 288
>ref|NP_849196.2| serine incorporator 2 isoform 1 [Homo sapiens].
Length = 455
Score = 289 bits (740), Expect = 2e-78
Identities = 141/287 (49%), Positives = 179/287 (62%), Gaps = 7/287 (2%)
Frame = +1
Query: 112 MGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPG 291
MG+ LG CS+ S CLCGSAPC+LC CCP+ NSTV+RLI+ FL +GV V+ +ML PG
Sbjct: 1 MGACLGACSLLSCASCLCGSAPCILCSCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPG 60
Query: 292 MEEQLNKIPGFCENEKGV-------VPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKS 450
+E QL K+P CE G+ + C L+GY+AVYR+CF A F M+ V S
Sbjct: 61 VESQLYKLPWVCEEGAGIPTVLQGHIDCGSLLGYRAVYRMCFATAAFFFFFTLLMLCVSS 120
Query: 451 SSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLID 630
S DPRAA+ NG P+G+FT +WFY G+ G+F FILIQLVLLID
Sbjct: 121 SRDPRAAIQNGFWFFKFLILVGLTVGAFYIPDGSFTNIWFYFGVVGSFLFILIQLVLLID 180
Query: 631 FAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFI 810
FAHSWN+ W+ K EE +SR WYA L T L T P+ C E K FI
Sbjct: 181 FAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTEPSGCHEGKVFI 240
Query: 811 SVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
S+N+ C SI ++LPK+Q++QP SGLLQ+SVIT+YTM+ TWSAL+
Sbjct: 241 SLNLTFCVCVSIAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALS 287
>ref|NP_061035.2| serine incorporator 2 isoform 2 [Homo sapiens].
Length = 459
Score = 276 bits (707), Expect = 2e-74
Identities = 135/280 (48%), Positives = 171/280 (61%), Gaps = 7/280 (2%)
Frame = +1
Query: 133 CSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNK 312
C CLCGSAPC+LC CCP+ NSTV+RLI+ FL +GV V+ +ML PG+E QL K
Sbjct: 12 CPRVRRASCLCGSAPCILCSCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPGVESQLYK 71
Query: 313 IPGFCENEKGV-------VPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAA 471
+P CE G+ + C L+GY+AVYR+CF A F M+ V SS DPRAA
Sbjct: 72 LPWVCEEGAGIPTVLQGHIDCGSLLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAA 131
Query: 472 VHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNE 651
+ NG P+G+FT +WFY G+ G+F FILIQLVLLIDFAHSWN+
Sbjct: 132 IQNGFWFFKFLILVGLTVGAFYIPDGSFTNIWFYFGVVGSFLFILIQLVLLIDFAHSWNQ 191
Query: 652 SWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLC 831
W+ K EE +SR WYA L T L T P+ C E K FIS+N+ C
Sbjct: 192 RWLGKAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTEPSGCHEGKVFISLNLTFC 251
Query: 832 FGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
SI ++LPK+Q++QP SGLLQ+SVIT+YTM+ TWSAL+
Sbjct: 252 VCVSIAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALS 291
>ref|NP_001185967.1| serine incorporator 2 isoform 4 [Homo sapiens].
Length = 464
Score = 276 bits (706), Expect = 2e-74
Identities = 134/272 (49%), Positives = 170/272 (62%), Gaps = 7/272 (2%)
Frame = +1
Query: 157 CLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNKIPGFCENE 336
CLCGSAPC+LC CCP+ NSTV+RLI+ FL +GV V+ +ML PG+E QL K+P CE
Sbjct: 25 CLCGSAPCILCSCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPGVESQLYKLPWVCEEG 84
Query: 337 KGV-------VPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXXXX 495
G+ + C L+GY+AVYR+CF A F M+ V SS DPRAA+ NG
Sbjct: 85 AGIPTVLQGHIDCGSLLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAAIQNGFWFF 144
Query: 496 XXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEE 675
P+G+FT +WFY G+ G+F FILIQLVLLIDFAHSWN+ W+ K EE
Sbjct: 145 KFLILVGLTVGAFYIPDGSFTNIWFYFGVVGSFLFILIQLVLLIDFAHSWNQRWLGKAEE 204
Query: 676 GNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASIMSI 855
+SR WYA L T L T P+ C E K FIS+N+ C SI ++
Sbjct: 205 CDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTEPSGCHEGKVFISLNLTFCVCVSIAAV 264
Query: 856 LPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
LPK+Q++QP SGLLQ+SVIT+YTM+ TWSAL+
Sbjct: 265 LPKVQDAQPNSGLLQASVITLYTMFVTWSALS 296
>ref|NP_001185966.1| serine incorporator 2 isoform 3 [Homo sapiens].
Length = 459
Score = 276 bits (706), Expect = 2e-74
Identities = 134/272 (49%), Positives = 170/272 (62%), Gaps = 7/272 (2%)
Frame = +1
Query: 157 CLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNKIPGFCENE 336
CLCGSAPC+LC CCP+ NSTV+RLI+ FL +GV V+ +ML PG+E QL K+P CE
Sbjct: 20 CLCGSAPCILCSCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPGVESQLYKLPWVCEEG 79
Query: 337 KGV-------VPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGXXXX 495
G+ + C L+GY+AVYR+CF A F M+ V SS DPRAA+ NG
Sbjct: 80 AGIPTVLQGHIDCGSLLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAAIQNGFWFF 139
Query: 496 XXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEE 675
P+G+FT +WFY G+ G+F FILIQLVLLIDFAHSWN+ W+ K EE
Sbjct: 140 KFLILVGLTVGAFYIPDGSFTNIWFYFGVVGSFLFILIQLVLLIDFAHSWNQRWLGKAEE 199
Query: 676 GNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGASIMSI 855
+SR WYA L T L T P+ C E K FIS+N+ C SI ++
Sbjct: 200 CDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTEPSGCHEGKVFISLNLTFCVCVSIAAV 259
Query: 856 LPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
LPK+Q++QP SGLLQ+SVIT+YTM+ TWSAL+
Sbjct: 260 LPKVQDAQPNSGLLQASVITLYTMFVTWSALS 291
>ref|NP_001185968.1| serine incorporator 2 isoform 5 [Homo sapiens].
Length = 400
Score = 216 bits (551), Expect = 2e-56
Identities = 109/232 (46%), Positives = 138/232 (59%), Gaps = 7/232 (3%)
Frame = +1
Query: 277 MLIPGMEEQLNKIPGFCENEKGV-------VPCNILVGYKAVYRLCFGLAMFHXXXXXXM 435
ML PG+E QL K+P CE G+ + C L+GY+AVYR+CF A F M
Sbjct: 1 MLSPGVESQLYKLPWVCEEGAGIPTVLQGHIDCGSLLGYRAVYRMCFATAAFFFFFTLLM 60
Query: 436 IKVKSSSDPRAAVHNGXXXXXXXXXXXXXXXXXXXPEGTFTTVWFYVGMAGAFCFILIQL 615
+ V SS DPRAA+ NG P+G+FT +WFY G+ G+F FILIQL
Sbjct: 61 LCVSSSRDPRAAIQNGFWFFKFLILVGLTVGAFYIPDGSFTNIWFYFGVVGSFLFILIQL 120
Query: 616 VLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAE 795
VLLIDFAHSWN+ W+ K EE +SR WYA L T L T P+ C E
Sbjct: 121 VLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTEPSGCHE 180
Query: 796 NKAFISVNMLLCFGASIMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
K FIS+N+ C SI ++LPK+Q++QP SGLLQ+SVIT+YTM+ TWSAL+
Sbjct: 181 GKVFISLNLTFCVCVSIAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALS 232
>ref|NP_001167543.1| serine incorporator 5 isoform 1 [Homo sapiens].
Length = 461
Score = 182 bits (462), Expect = 4e-46
Identities = 104/276 (37%), Positives = 142/276 (51%), Gaps = 6/276 (2%)
Frame = +1
Query: 142 ASWIPCLCGSAPC-LLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNK-I 315
A + C CGSA C L C CCP S TR +YAL+ ++ V + C+M+ + ++ + I
Sbjct: 7 AGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHI 66
Query: 316 PGF---CENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGX 486
P F C+ K C LVGY AVYR+CFG+A F +K+ +S RA +HNG
Sbjct: 67 PFFEDMCKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSCRAHIHNGF 126
Query: 487 XXXXXXXXXXXXXXXXXXPE-GTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVE 663
P+ TF W YVG G F FI IQL+LL++FAH WN++W
Sbjct: 127 WFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAHKWNKNWTA 186
Query: 664 KMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGAS 843
+++ WYA+L T + T SC ENK + VN LC S
Sbjct: 187 GT--ASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVNGGLCLLIS 244
Query: 844 IMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
+++I P +Q QP SGLLQS VI+ Y Y T+SAL+
Sbjct: 245 LVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALS 280
>ref|NP_840060.1| serine incorporator 5 isoform 2 [Homo sapiens].
Length = 423
Score = 182 bits (462), Expect = 4e-46
Identities = 104/276 (37%), Positives = 142/276 (51%), Gaps = 6/276 (2%)
Frame = +1
Query: 142 ASWIPCLCGSAPC-LLCRCCPSGNNSTVTRLIYALFLLVGVCVACVMLIPGMEEQLNK-I 315
A + C CGSA C L C CCP S TR +YAL+ ++ V + C+M+ + ++ + I
Sbjct: 7 AGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHI 66
Query: 316 PGF---CENEKGVVPCNILVGYKAVYRLCFGLAMFHXXXXXXMIKVKSSSDPRAAVHNGX 486
P F C+ K C LVGY AVYR+CFG+A F +K+ +S RA +HNG
Sbjct: 67 PFFEDMCKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSCRAHIHNGF 126
Query: 487 XXXXXXXXXXXXXXXXXXPE-GTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVE 663
P+ TF W YVG G F FI IQL+LL++FAH WN++W
Sbjct: 127 WFFKLLLLGAMCSGAFFIPDQDTFLNAWRYVGAVGGFLFIGIQLLLLVEFAHKWNKNWTA 186
Query: 664 KMEEGNSRCWYAALLSATALNXXXXXXXXXXXXXXXTHPASCAENKAFISVNMLLCFGAS 843
+++ WYA+L T + T SC ENK + VN LC S
Sbjct: 187 GT--ASNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDSCMENKILLGVNGGLCLLIS 244
Query: 844 IMSILPKIQESQPRSGLLQSSVITVYTMYFTWSALN 951
+++I P +Q QP SGLLQS VI+ Y Y T+SAL+
Sbjct: 245 LVAISPWVQNRQPHSGLLQSGVISCYVTYLTFSALS 280
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,809,083
Number of extensions: 809615
Number of successful extensions: 2725
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2681
Number of HSP's successfully gapped: 11
Length of query: 318
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 215
Effective length of database: 14,901,872
Effective search space: 3203902480
Effective search space used: 3203902480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008254
(956 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 345 3e-92
>Sscrofa_Chr01
|| Length = 315321322
Score = 345 bits (174), Expect = 3e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 698 cagctttgctatcagctacagccctgaattatctgctgtctttagttgctgtcgtcctat 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44439808 cagctttgctatcagctacagccctgaattatctgctgtctttagttgctgtcgtcctat 44439867
Query: 758 tttttgtttactatactcatccagccagttgtgcagaaaataaagccttcatcagtgtca 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44439868 tttttgtttactatactcatccagccagttgtgcagaaaataaagccttcatcagtgtca 44439927
Query: 818 atatgctcctctgctttggtgcttctataatgtctatactgccaaaaatccaag 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44439928 atatgctcctctgctttggtgcttctataatgtctatactgccaaaaatccaag 44439981
Score = 341 bits (172), Expect = 4e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 311 agattcctggattttgtgagaatgagaaaggagtggtcccttgtaatattctggttggct 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44540096 agattcctggattttgtgagaatgagaaaggagtggtcccttgtaatattctggttggct 44540155
Query: 371 ataaagctgtataccgtttgtgctttggattggcaatgtttcatcttctcctgtctctac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44540156 ataaagctgtataccgtttgtgctttggattggcaatgtttcatcttctcctgtctctac 44540215
Query: 431 tgatgatcaaagtaaagagcagcagtgatcctagagctgcagtgcataatgg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44540216 tgatgatcaaagtaaagagcagcagtgatcctagagctgcagtgcataatgg 44540267
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 2 ggggtgagctttgcgccggaagtcgcttgtagttagtaaataagcacagacagacacaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44519711 ggggtgagctttgcgccggaagtcgcttgtagttagtaaataagcacagacagacacaga 44519770
Query: 62 ggctctgtctccatcttgttggcatctgctgctcctgcgacgttgtggagatggggagcg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44519771 ggctctgtctccatcttgttggcatctgctgctcctgcgacgttgtggagatggggagcg 44519830
Query: 122 tcttggggctctgctccatggcgagctgg 150
|||||||||||||||||||||||||||||
Sbjct: 44519831 tcttggggctctgctccatggcgagctgg 44519859
Score = 281 bits (142), Expect = 3e-73
Identities = 156/163 (95%)
Strand = Plus / Plus
Query: 150 gataccgtgtttgtgtggcagtgccccgtgtttgctgtgccgatgctgtccaagtggaaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44537105 gataccgtgtttgtgtggcagtgccccgtgtttgctgtgccgatgctgtccaagtggaaa 44537164
Query: 210 caactccactgtaactaggttgatctatgcccnnnnnnngcttgttggagtgtgtgtagc 269
|||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 44537165 caactccactgtaactaggttgatctatgccctttttttgcttgttggagtgtgtgtagc 44537224
Query: 270 ttgtgtaatgttgataccaggaatggaagaacaactgaataag 312
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44537225 ttgtgtaatgttgataccaggaatggaagaacaactgaataag 44537267
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 562 gtgtggttttatgtaggcatggcaggtgccttttgcttcatccttatacagctagtctta 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44437724 gtgtggttttatgtaggcatggcaggtgccttttgcttcatccttatacagctagtctta 44437783
Query: 622 cttattgattttgcccattcatggaatgaatcatgggttgaaaaaatggaagaagggaac 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44437784 cttattgattttgcccattcatggaatgaatcatgggttgaaaaaatggaagaagggaac 44437843
Query: 682 tcgagatgttggtatgcag 700
|||||||||||||||||||
Sbjct: 44437844 tcgagatgttggtatgcag 44437862
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 482 gattctggttctttaaatttgctgtagcaattgcaattattattggggctttcttcattc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44437422 gattctggttctttaaatttgctgtagcaattgcaattattattggggctttcttcattc 44437481
Query: 542 cagaaggaacttttacaactg 562
|||||||||||||||||||||
Sbjct: 44437482 cagaaggaacttttacaactg 44437502
Score = 141 bits (71), Expect = 8e-31
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 871 gaatcacaaccaagatctggtttgctacagtcttcagtaattacagtctacacaatgtat 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44440084 gaatcacaaccaagatctggtttgctacagtcttcagtaattacagtctacacaatgtat 44440143
Query: 931 tttacatggtctgct 945
|| ||||||||||||
Sbjct: 44440144 ttgacatggtctgct 44440158
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,916,985
Number of extensions: 169
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 7
Length of query: 956
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 935
Effective length of database: 2,808,413,156
Effective search space: 2625866300860
Effective search space used: 2625866300860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)