Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008265
(968 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178460.1| dynactin subunit 4 [Bos taurus]. 299 3e-81
Alignment gi|XP_002689343.1| PREDICTED: dynactin 4 (p62) isoform 2 [Bos t... 299 3e-81
Alignment gi|XP_002689342.1| PREDICTED: dynactin 4 (p62) isoform 1 [Bos t... 299 3e-81
Alignment gi|XP_880178.2| PREDICTED: dynactin 4 (p62) isoform 3 [Bos taur... 299 3e-81
>ref|NP_001178460.1| dynactin subunit 4 [Bos taurus].
Length = 467
Score = 299 bits (765), Expect = 3e-81
Identities = 138/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCS+LRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSDLRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
>ref|XP_002689343.1| PREDICTED: dynactin 4 (p62) isoform 2 [Bos taurus].
Length = 467
Score = 299 bits (765), Expect = 3e-81
Identities = 138/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCS+LRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSDLRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
>ref|XP_002689342.1| PREDICTED: dynactin 4 (p62) isoform 1 [Bos taurus].
Length = 460
Score = 299 bits (765), Expect = 3e-81
Identities = 138/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCS+LRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSDLRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
>ref|XP_880178.2| PREDICTED: dynactin 4 (p62) isoform 3 [Bos taurus].
Length = 460
Score = 299 bits (765), Expect = 3e-81
Identities = 138/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCS+LRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSDLRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,354,711
Number of extensions: 1157715
Number of successful extensions: 6895
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6818
Number of HSP's successfully gapped: 4
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008265
(968 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536464.1| PREDICTED: similar to dynactin 4 isoform 1 [Can... 306 2e-83
Alignment gi|XP_853535.1| PREDICTED: similar to dynactin subunit p62 isof... 300 1e-81
Alignment gi|XP_867523.1| PREDICTED: similar to Dynactin subunit 4 (Dynac... 300 1e-81
Alignment gi|XP_867506.1| PREDICTED: similar to dynactin subunit p62 isof... 268 6e-72
>ref|XP_536464.1| PREDICTED: similar to dynactin 4 isoform 1 [Canis familiaris].
Length = 152
Score = 306 bits (784), Expect = 2e-83
Identities = 144/151 (95%), Positives = 147/151 (97%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVSDASSGR 479
VGMADKSVASGGWQEP++PHTQRVS SS R
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRVSKVSSER 151
>ref|XP_853535.1| PREDICTED: similar to dynactin subunit p62 isoform 2 [Canis
familiaris].
Length = 467
Score = 300 bits (768), Expect = 1e-81
Identities = 139/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
>ref|XP_867523.1| PREDICTED: similar to Dynactin subunit 4 (Dynactin subunit p62)
isoform 4 [Canis familiaris].
Length = 460
Score = 300 bits (768), Expect = 1e-81
Identities = 139/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
>ref|XP_867506.1| PREDICTED: similar to dynactin subunit p62 isoform 3 [Canis
familiaris].
Length = 133
Score = 268 bits (685), Expect = 6e-72
Identities = 126/128 (98%), Positives = 127/128 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSV 410
VGMADKSV
Sbjct: 121 VGMADKSV 128
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,932,866
Number of extensions: 1187637
Number of successful extensions: 7011
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6953
Number of HSP's successfully gapped: 4
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008265
(968 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361605.1| PREDICTED: dynactin subunit 4-like, partial ... 300 1e-81
>ref|XP_003361605.1| PREDICTED: dynactin subunit 4-like, partial [Sus scrofa].
Length = 572
Score = 300 bits (767), Expect = 1e-81
Identities = 140/145 (96%), Positives = 143/145 (98%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKL +RCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLLGHRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEPDHPHTQR++
Sbjct: 121 VGMADKSVASGGWQEPDHPHTQRMN 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,361,959
Number of extensions: 744714
Number of successful extensions: 4270
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4236
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008265
(968 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080578.1| dynactin subunit 4 [Mus musculus]. 300 1e-81
>ref|NP_080578.1| dynactin subunit 4 [Mus musculus].
Length = 460
Score = 300 bits (768), Expect = 1e-81
Identities = 139/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,180,781
Number of extensions: 987439
Number of successful extensions: 5182
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5118
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008265
(968 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057305.1| dynactin subunit 4 isoform b [Homo sapiens]. 299 3e-81
Alignment gi|NP_001129115.1| dynactin subunit 4 isoform a [Homo sapiens]. 299 3e-81
Alignment gi|NP_001129116.1| dynactin subunit 4 isoform c [Homo sapiens]. 183 2e-46
>ref|NP_057305.1| dynactin subunit 4 isoform b [Homo sapiens].
Length = 460
Score = 299 bits (765), Expect = 3e-81
Identities = 138/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQS+RVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
>ref|NP_001129115.1| dynactin subunit 4 isoform a [Homo sapiens].
Length = 467
Score = 299 bits (765), Expect = 3e-81
Identities = 138/145 (95%), Positives = 144/145 (99%)
Frame = +3
Query: 27 MASLLQSERVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 206
MASLLQS+RVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
Sbjct: 1 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 60
Query: 207 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWTSRD 386
AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWTSRD
Sbjct: 61 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 120
Query: 387 VGMADKSVASGGWQEPDHPHTQRVS 461
VGMADKSVASGGWQEP++PHTQR++
Sbjct: 121 VGMADKSVASGGWQEPENPHTQRMN 145
>ref|NP_001129116.1| dynactin subunit 4 isoform c [Homo sapiens].
Length = 403
Score = 183 bits (465), Expect = 2e-46
Identities = 82/88 (93%), Positives = 87/88 (98%)
Frame = +3
Query: 198 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTAVKKAYYLACGFCRWT 377
MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKT +KKAYYLACGFCRWT
Sbjct: 1 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWT 60
Query: 378 SRDVGMADKSVASGGWQEPDHPHTQRVS 461
SRDVGMADKSVASGGWQEP++PHTQR++
Sbjct: 61 SRDVGMADKSVASGGWQEPENPHTQRMN 88
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,235,336
Number of extensions: 1171937
Number of successful extensions: 6731
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6677
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008265
(968 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894772.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1039 0.0
Sscrofa_Chr04 165 6e-38
>gb|GL894772.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3403
Length = 39198
Score = 1039 bits (524), Expect = 0.0
Identities = 554/560 (98%), Gaps = 3/560 (0%)
Strand = Plus / Minus
Query: 411 gctagtggtggttggcaggaacctgaccatcctcacacgcagcgggtgagtgacgcgtcc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 23592 gctagtggtggttggcaggaacctgaccatcctcacacgcagcgggtgagtgaagcgtcc 23533
Query: 471 tcggggagggtggggcacacgccaagacggggcagagccgggcttctccgtgggtttggc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23532 tcggggagggtggggcacacgccaagacggggcagagccgggcttctccgtgggtttggc 23473
Query: 531 tgaggccggcacacccgcgatgtgcacattgtgtgtcctcggcacgtagaaaggcttctc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23472 tgaggccggcacacccgcgatgtgcacattgtgtgtcctcggcacgtagaaaggcttctc 23413
Query: 591 gttgtacgatgttcagtcagaatggcagttttttctagtctgacttaacagaagaaccga 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23412 gttgtacgatgttcagtcagaatggcagttttttctagtctgacttaacagaagaaccga 23353
Query: 651 ggactattttagttctgtcctcaaggtgtgcattggagaaaggaagtgatatgtttctgt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23352 ggactattttagttctgtcctcaaggtgtgcattggagaaaggaagtgatatgtttctgt 23293
Query: 711 ttttcacatacctaccaaccaagttaaggttccatgagttctcagatattcttggaactg 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23292 ttttcacatacctaccaaccaagttaaggttccatgagttctcagatattcttggaactg 23233
Query: 771 ttctcagcgtgtagatggctgaagtcctggaaacaccattagtccaggaaataccctcgg 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23232 ttctcagcgtgtagatggctgaagtcctggaaacaccattagtccaggaaataccctcgg 23173
Query: 831 acccgtcgtggtcgcttacggagtcgtggcttacacatcctttaattcgagctctcagtg 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172 acccgtcgtggtcgcttacggagtcgtggcttacacatcctttaattcgagctctcagtg 23113
Query: 891 acttgatctccgtacttgtca-taaagctgacgttgttgccccggaaagta-aatacggg 948
||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 23112 acttgatctccgtacttgtcattaaagctgacgttgttgccccgg-aagtagaatacgga 23054
Query: 949 aaaggtgatgaaatgctgtc 968
||||||||||| ||||||||
Sbjct: 23053 aaaggtgatgagatgctgtc 23034
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 230 taggtgcgccaactgcttcgactgtcccggctgcatgcacaccctctccacgcgggcaac 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29654 taggtgcgccaactgcttcgactgtcccggctgcatgcacaccctctccacgcgggcaac 29595
Query: 290 gagcatctccacccagctcccagatgacccggccaagaccgccgtcaagaaagcctatta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29594 gagcatctccacccagctcccagatgacccggccaagaccgccgtcaagaaagcctatta 29535
Query: 350 tctggcctgtggattctgtcgctggacatccagagatgtgggcatggcagacaaatctgt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29534 tctggcctgtggattctgtcgctggacatccagagatgtgggcatggcagacaaatctgt 29475
Query: 410 gg 411
||
Sbjct: 29474 gg 29473
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 3 gtcgttggctcctccctctccaagatggcgtccctgctgcagtcggagcgggttctctac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35407 gtcgttggctcctccctctccaagatggcgtccctgctgcagtcggagcgggttctctac 35348
Query: 63 ctagtccagggagaaaagaaggttcgggccccgctctcgcagctttacttctgtcgctat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35347 ctagtccagggagaaaagaaggttcgggccccgctctcgcagctttacttctgtcgctat 35288
Query: 123 tgcagcgagctgcgatcgctggaatgtgtgtctcacgaggt 163
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 35287 tgcagcgagctgcgatcgctggaatgtgtgtctcacgaggt 35247
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 160 aggtggactctcattattgtcccagttgtttagaaaatatgccatcggctgaagccaaac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32416 aggtggactctcattattgtcccagttgtttagaaaatatgccatcggctgaagccaaac 32357
>Sscrofa_Chr04
|| Length = 143465943
Score = 165 bits (83), Expect = 6e-38
Identities = 303/377 (80%), Gaps = 3/377 (0%)
Strand = Plus / Plus
Query: 32 gtccctgctgcagtcggagcgggttctctacctagtccagggagaaaagaaggttcgggc 91
|||| |||||| ||||||| ||||||| |||| ||| |||||||||||| |||| ||
Sbjct: 56212775 gtccttgctgccatcggagcaggttctccacctggtcaggggagaaaagaaagttcaggt 56212834
Query: 92 cccgctctcgcagctttacttctgtcgctattgcagcgagctgcgatcgctggaatgtgt 151
||| |||| ||| |||| |||||| ||||||||| ||||| | | ||||||||| ||
Sbjct: 56212835 cccattctcacagattta--tctgtctctattgcagtgagctctg-tggctggaatgagt 56212891
Query: 152 gtctcacgaggtggactctcattattgtcccagttgtttagaaaatatgccatcggctga 211
| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 56212892 gcctcacaaggtggactgtcattattgtcctagttgtttagaaaatatgccatcacctga 56212951
Query: 212 agccaaactnnnnnnnnntaggtgcgccaactgcttcgactgtcccggctgcatgcacac 271
|| |||||| || || ||||||||||| ||||| | ||||| |||||
Sbjct: 56212952 agtcaaactgaaaaagaataaatgtgccaactgctttgactgcactggctgttcacacac 56213011
Query: 272 cctctccacgcgggcaacgagcatctccacccagctcccagatgacccggccaagaccgc 331
| |||||| | ||||| |||||| |||| ||||| ||||||||||| | ||||| | |
Sbjct: 56213012 catctccattcaggcaagaagcatcaccacacagcttccagatgacccagtcaagatcac 56213071
Query: 332 cgtcaagaaagcctattatctggcctgtggattctgtcgctggacatccagagatgtggg 391
| | ||||||||| || |||||||| |||||| |||| ||||||||| |||||||||||
Sbjct: 56213072 catgaagaaagcccatcatctggccaatggattttgtcactggacatctagagatgtggg 56213131
Query: 392 catggcagacaaatctg 408
||||||||| |||||||
Sbjct: 56213132 catggcagaaaaatctg 56213148
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,196,069
Number of extensions: 138
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 6
Length of query: 968
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 947
Effective length of database: 2,808,413,156
Effective search space: 2659567258732
Effective search space used: 2659567258732
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)