Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008267
(1091 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098877.1| activated RNA polymerase II transcriptional ... 177 1e-44
>ref|NP_001098877.1| activated RNA polymerase II transcriptional coactivator p15 [Bos
taurus].
Length = 127
Score = 177 bits (450), Expect = 1e-44
Identities = 89/103 (86%), Positives = 89/103 (86%)
Frame = +3
Query: 126 LKRKKQVAPEKPVKKQKTGETXXXXXXXXXXXXXRDDNMFQIGKMRYVSVRDFKGKVLID 305
LKRKKQVAPEKPVKKQKTGET RDDNMFQIGKMRYVSVRDFKGKVLID
Sbjct: 25 LKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLID 84
Query: 306 IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 434
IREYWMD EGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL
Sbjct: 85 IREYWMDAEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,612,853
Number of extensions: 772395
Number of successful extensions: 1799
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1799
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008267
(1091 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536425.2| PREDICTED: similar to Activated RNA polymerase ... 192 4e-49
Alignment gi|XP_853832.1| PREDICTED: similar to Activated RNA polymerase ... 177 2e-44
>ref|XP_536425.2| PREDICTED: similar to Activated RNA polymerase II transcriptional
coactivator p15 (Positive cofactor 4) (PC4) (p14) [Canis
familiaris].
Length = 318
Score = 192 bits (489), Expect = 4e-49
Identities = 102/144 (70%), Positives = 102/144 (70%)
Frame = +3
Query: 3 VESKRASRRWFAYPSGAMPXXXXXXXXXXXXXXXXXXXXXXLKRKKQVAPEKPVKKQKTG 182
V KRASRR F SGAMP LKRKKQV PEKPVKKQKTG
Sbjct: 175 VTCKRASRRQFGRESGAMPKSKELVSSSSSGSDSDSEVDKKLKRKKQVTPEKPVKKQKTG 234
Query: 183 ETXXXXXXXXXXXXXRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGI 362
ET RDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGI
Sbjct: 235 ETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGI 294
Query: 363 SLNPEQWSQLKEQISDIDDAVRKL 434
SLNPEQWSQLKEQISDIDDAVRKL
Sbjct: 295 SLNPEQWSQLKEQISDIDDAVRKL 318
>ref|XP_853832.1| PREDICTED: similar to Activated RNA polymerase II transcriptional
coactivator p15 (Positive cofactor 4) (PC4) (p14) [Canis
familiaris].
Length = 127
Score = 177 bits (449), Expect = 2e-44
Identities = 87/103 (84%), Positives = 89/103 (86%)
Frame = +3
Query: 126 LKRKKQVAPEKPVKKQKTGETXXXXXXXXXXXXXRDDNMFQIGKMRYVSVRDFKGKVLID 305
LKRKKQV PEKPVKKQKTGET RDDNMFQIGKMRY+SV+DFKGKVLID
Sbjct: 25 LKRKKQVTPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMRYISVQDFKGKVLID 84
Query: 306 IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 434
IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL
Sbjct: 85 IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,129,634
Number of extensions: 789802
Number of successful extensions: 1917
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1916
Number of HSP's successfully gapped: 2
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008267
(1091 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133324.1| PREDICTED: activated RNA polymerase II trans... 181 8e-46
>ref|XP_003133324.1| PREDICTED: activated RNA polymerase II transcriptional coactivator
p15-like [Sus scrofa].
Length = 127
Score = 181 bits (458), Expect = 8e-46
Identities = 90/103 (87%), Positives = 90/103 (87%)
Frame = +3
Query: 126 LKRKKQVAPEKPVKKQKTGETXXXXXXXXXXXXXRDDNMFQIGKMRYVSVRDFKGKVLID 305
LKRKKQVAPEKPVKKQKTGET RDDNMFQIGKMRYVSVRDFKGKVLID
Sbjct: 25 LKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLID 84
Query: 306 IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 434
IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL
Sbjct: 85 IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,162,906
Number of extensions: 487934
Number of successful extensions: 1146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008267
(1091 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035424.1| activated RNA polymerase II transcriptional coa... 168 6e-42
>ref|NP_035424.1| activated RNA polymerase II transcriptional coactivator p15 [Mus
musculus].
Length = 127
Score = 168 bits (426), Expect = 6e-42
Identities = 84/103 (81%), Positives = 85/103 (82%)
Frame = +3
Query: 126 LKRKKQVAPEKPVKKQKTGETXXXXXXXXXXXXXRDDNMFQIGKMRYVSVRDFKGKVLID 305
LKRKKQ PEKPVKKQK GET RDDNMFQIGKMRYVSVRDFKGK+LID
Sbjct: 25 LKRKKQAVPEKPVKKQKPGETSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILID 84
Query: 306 IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 434
IREYWMD EGEMKPGRKGISLN EQWSQLKEQISDIDDAVRKL
Sbjct: 85 IREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL 127
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,583,238
Number of extensions: 679426
Number of successful extensions: 1612
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1612
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008267
(1091 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006704.3| activated RNA polymerase II transcriptional coa... 181 1e-45
>ref|NP_006704.3| activated RNA polymerase II transcriptional coactivator p15 [Homo
sapiens].
Length = 127
Score = 181 bits (458), Expect = 1e-45
Identities = 90/103 (87%), Positives = 90/103 (87%)
Frame = +3
Query: 126 LKRKKQVAPEKPVKKQKTGETXXXXXXXXXXXXXRDDNMFQIGKMRYVSVRDFKGKVLID 305
LKRKKQVAPEKPVKKQKTGET RDDNMFQIGKMRYVSVRDFKGKVLID
Sbjct: 25 LKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLID 84
Query: 306 IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 434
IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL
Sbjct: 85 IREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,551,306
Number of extensions: 785102
Number of successful extensions: 1892
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1892
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008267
(1091 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1338 0.0
Sscrofa_ChrX 446 e-122
>Sscrofa_Chr15
|| Length = 157681621
Score = 1338 bits (675), Expect = 0.0
Identities = 752/779 (96%), Gaps = 4/779 (0%)
Strand = Plus / Plus
Query: 178 ctggtgaaacttcaagagcactgtcgtcctccaagcagagcagcagcagcagagatgata 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055527 ctggtgaaacttcaagagcactgtcgtcctccaagcagagcagcagcagcagagatgata 20055586
Query: 238 acatgtttcagattgggaaaatgaggtatgtcagtgttcgggactttaaagggaaagtct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055587 acatgtttcagattgggaaaatgaggtatgtcagtgttcgggactttaaagggaaagtct 20055646
Query: 298 taattgatattagagaatattggatggatccagaaggtgaaatgaaaccaggaagaaaag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055647 taattgatattagagaatattggatggatccagaaggtgaaatgaaaccaggaagaaaag 20055706
Query: 358 gtatttctttaaatcctgagcagtggagccagctgaaagaacagatatctgacattgatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055707 gtatttctttaaatcctgagcagtggagccagctgaaagaacagatatctgacattgatg 20055766
Query: 418 atgcagtaagaaaactgtaaaatcagagccatattaaaacttgtactgtcctagttgttt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055767 atgcagtaagaaaactgtaaaatcagagccatattaaaacttgtactgtcctagttgttt 20055826
Query: 478 tatctgtctttctacattggcttttgttttctaaatgttgttttccaagctattgtatat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055827 tatctgtctttctacattggcttttgttttctaaatgttgttttccaagctattgtatat 20055886
Query: 538 ttggattgcagaacagtttgtaagatgaatacnnnnnnnnnnaaatgtgcattattaaaa 597
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 20055887 ttggattgcagaacagtttgtaagatgaatac-tttttttttaaatgtgcattattaaaa 20055945
Query: 598 atgttctgagtggagctaattgtcagttttattaaggaggattgcttttgtgtctaccac 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055946 atgttctgagtggagctaattgtcagttttattaaggaggattgcttttgtgtctaccac 20056005
Query: 658 ctggtgtgaaataaaatcaagtaatacaatcttaactgttgtggccttctttgatcaaaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20056006 ctggtgtgaaataaaatcaagtaatacaatcttaactgttgtggccttctttgatcaaaa 20056065
Query: 718 gagttggtattaaggccaaaaattaacagtttatagaccttttagtttcaactcagcttt 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20056066 gagttggtattaaggccaaaaattaacagtttatagaccttttagtttcaactcagcttt 20056125
Query: 778 tacattcaaaagaatgtacattgtgttgaattgacttttggtttgtgaaattcatagtgg 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20056126 tacattcaaaagaatgtacattgtgttgaattgacttttggtttgtgaaattcatagtgg 20056185
Query: 838 atctatagtcttctaaccaaatgtctggactggtttgg-nnnnnnnnnnnccccaacccc 896
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20056186 atctatagtcttctaaccaaatgtctggactggtttggttttttttttttccccaacccc 20056245
Query: 897 aatgaatac-tctctttcccctttttcttttacttcaaataacttaacttggcatgttc 954
|||| |||| |||||||||||||||||||||||||| ||||||||| |||| |||||||
Sbjct: 20056246 aatg-atacttctctttcccctttttcttttacttctaataacttatcttgtcatgttc 20056303
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 gagtcgagagcaagcgagccagcaggaggtggttcgcctacccgagcggagcaatgccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055350 gagtcgagagcaagcgagccagcaggaggtggttcgcctacccgagcggagcaatgccta 20055409
Query: 61 agtcaaaggaacttgtttcttcaagctcttctggcagcgattctgacagtgaagttgac 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20055410 agtcaaaggaacttgtttcttcaagctcttctggcagcgattctgacagtgaagttgac 20055468
>Sscrofa_ChrX
|| Length = 144288218
Score = 446 bits (225), Expect = e-122
Identities = 323/353 (91%), Gaps = 2/353 (0%)
Strand = Plus / Plus
Query: 181 gtgaaacttcaagagcactgtcgtcctccaagcagagcagcagcagcagagatgataaca 240
|||||||||||||||||||||| |||||||||| | ||||||||||||||||| |||||
Sbjct: 80592435 gtgaaacttcaagagcactgtcaccctccaagcatatcagcagcagcagagatgctaaca 80592494
Query: 241 tgtttcagattgggaaaatgaggtatgtcagtgttcgggactttaaagggaaagtcttaa 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 80592495 tgtttcagattgggaaaatgaggtatgtcagtgttcgggactttaaagaaaaagtcttaa 80592554
Query: 301 ttgatattagagaatattggatggatccagaaggtgaaatgaaaccaggaagaaaaggta 360
||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||
Sbjct: 80592555 ttgatattagagaatatcagatggatccggaacatgaaatgaaaccaggaacaaaaggta 80592614
Query: 361 tttctttaaatcctgagcagtggagccagctgaaagaacagatatctgacattgatgatg 420
|||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 80592615 tttctttaaatcctgaacagcagaaccagctgaaagaacagatatctgacaatgatgatg 80592674
Query: 421 cagtaagaaaactgtaaaatcagagccatattaaaacttgtactgtcctagttgttttat 480
||||||||||| | |||||||| ||||||| |||||| || |||| |||||||||||||
Sbjct: 80592675 cagtaagaaaagtataaaatcaaagccata-taaaaccagtgctgttctagttgttttat 80592733
Query: 481 ctgtctttctacattggcttttgttttctaaatgttgttttccaagctattgt 533
|||||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 80592734 ctgtctttttaca-tggctttcattttctaaatgttgttttccaagctattgt 80592785
Score = 446 bits (225), Expect = e-122
Identities = 323/353 (91%), Gaps = 2/353 (0%)
Strand = Plus / Minus
Query: 181 gtgaaacttcaagagcactgtcgtcctccaagcagagcagcagcagcagagatgataaca 240
|||||||||||||||||||||| |||||||||| | ||||||||||||||||| |||||
Sbjct: 80724050 gtgaaacttcaagagcactgtcaccctccaagcatatcagcagcagcagagatgctaaca 80723991
Query: 241 tgtttcagattgggaaaatgaggtatgtcagtgttcgggactttaaagggaaagtcttaa 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 80723990 tgtttcagattgggaaaatgaggtatgtcagtgttcgggactttaaagaaaaagtcttaa 80723931
Query: 301 ttgatattagagaatattggatggatccagaaggtgaaatgaaaccaggaagaaaaggta 360
||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||
Sbjct: 80723930 ttgatattagagaatatcagatggatccggaacatgaaatgaaaccaggaacaaaaggta 80723871
Query: 361 tttctttaaatcctgagcagtggagccagctgaaagaacagatatctgacattgatgatg 420
|||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 80723870 tttctttaaatcctgaacagcagaaccagctgaaagaacagatatctgacaatgatgatg 80723811
Query: 421 cagtaagaaaactgtaaaatcagagccatattaaaacttgtactgtcctagttgttttat 480
||||||||||| | |||||||| ||||||| |||||| || |||| |||||||||||||
Sbjct: 80723810 cagtaagaaaagtataaaatcaaagccata-taaaaccagtgctgttctagttgttttat 80723752
Query: 481 ctgtctttctacattggcttttgttttctaaatgttgttttccaagctattgt 533
|||||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 80723751 ctgtctttttaca-tggctttcattttctaaatgttgttttccaagctattgt 80723700
Score = 113 bits (57), Expect = 2e-22
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 38 ctacccgagcggagcaatgcctaagtcaaaggaacttgtttcttcaagctcttctggcag 97
||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 80592294 ctacccgagaggggcaatgcctaagtcaaaggaacttgtttcttcaagctcttttggcag 80592353
Query: 98 cgattctga 106
|||||||||
Sbjct: 80592354 cgattctga 80592362
Score = 113 bits (57), Expect = 2e-22
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 38 ctacccgagcggagcaatgcctaagtcaaaggaacttgtttcttcaagctcttctggcag 97
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Sbjct: 80724191 ctacccgagaggggcaatgcctaagtcaaaggaacttgtttcttcaagctcttttggcag 80724132
Query: 98 cgattctga 106
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Sbjct: 80724131 cgattctga 80724123
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,758,587
Number of extensions: 341
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 10
Length of query: 1091
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1070
Effective length of database: 2,808,413,156
Effective search space: 3005002076920
Effective search space used: 3005002076920
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)