Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008270
(1600 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093176.1| extracellular matrix protein 1 [Bos taurus]. 699 0.0
>ref|NP_001093176.1| extracellular matrix protein 1 [Bos taurus].
Length = 517
Score = 699 bits (1805), Expect = 0.0
Identities = 333/486 (68%), Positives = 370/486 (76%), Gaps = 5/486 (1%)
Frame = +1
Query: 112 MGTTSRXXXXXXXXXXXXXXPEGVSKAPGQRELGAE---HLLQEAGYAAPPSPPLSHTLP 282
MGT S +G KA GQRELG + H LQ+ GYAAPPSPPLS LP
Sbjct: 1 MGTMSGAALVLACLTVASVASDGGFKASGQRELGPQPLTHPLQQVGYAAPPSPPLSRALP 60
Query: 283 RDPPDTSQQSPHFEGQSEVQPSSSQEAIPFQQEELTPAQLPAEKKGDPPLLQETVPLQKE 462
+ P TSQ S H EGQSEVQPS SQ+AIP LQ+E
Sbjct: 61 QGHPRTSQHSLHSEGQSEVQPSPSQDAIP---------------------------LQEE 93
Query: 463 QSPPKLPTEQKEKKPSSFMEHRPPEPGSWNAAQHCQPGRPRGGWGHRLDGFPPGRPSLDN 642
PP++P EQKE+KP+ M+H PPEP SWN AQHCQ GRPRGGWGHRLDGFPPGRPSLDN
Sbjct: 94 LPPPQVPIEQKEEKPAPSMDHSPPEPESWNPAQHCQHGRPRGGWGHRLDGFPPGRPSLDN 153
Query: 643 MDQICLPNRQHVVYGPWNLPQTGFSHLSRQGEALNLLETGYSRCCRCHNYIHRLDCAKLV 822
+DQICLP+RQHVVYGPWNLPQTGFSHLSRQGE LNLLETGYSRCCRC N +RLDCA+LV
Sbjct: 154 LDQICLPSRQHVVYGPWNLPQTGFSHLSRQGETLNLLETGYSRCCRCRNRTNRLDCAELV 213
Query: 823 WEDAMTRFCEAEFSVKTRPHGCCKRQGEARFSCFQEEAPRPHYQLRACPSHQPGISSGXX 1002
WED++TRFCEAEFSVKT+PHGCCK+QGEAR SCFQEEAPRPHYQLRACPSHQPGIS G
Sbjct: 214 WEDSVTRFCEAEFSVKTQPHGCCKKQGEARLSCFQEEAPRPHYQLRACPSHQPGISLGPE 273
Query: 1003 XXXXXXXXTLDNIKNICHLRRFRSVPRNLPATDPIQRQLHALTQLEGEFQRCCQQGNNHT 1182
T+DNIKNICHL+RFRSVPRNLPATD IQRQL ALT+LE EFQRCC+QGNNHT
Sbjct: 274 LPFPPGLPTVDNIKNICHLKRFRSVPRNLPATDSIQRQLQALTRLEAEFQRCCRQGNNHT 333
Query: 1183 CTWKAWEDALDGYCNQEQATKTHRHLCCHHPPSPARDECFARQAPYPNYDRDILALDLSR 1362
CTWKAWED LDGYC+ EQA KTH H CC++PPSP RD+CFAR+APYPNYDRDIL LDLSR
Sbjct: 334 CTWKAWEDTLDGYCDWEQAIKTHHHSCCNYPPSPLRDKCFARRAPYPNYDRDILTLDLSR 393
Query: 1363 VTPNLMSHLCGNRRVLTQHKQIPGLIQNMTVRCCDVPFPXXXXXXXXXKQPY-RHLCGAE 1539
+TPNLM+HLCGNRRVL++HKQIPGLIQ +T RCCD+PFP K + LCG+
Sbjct: 394 ITPNLMNHLCGNRRVLSKHKQIPGLIQKVTARCCDLPFPEQACCAEEEKSAFIDELCGSR 453
Query: 1540 K-VWRD 1554
+ WRD
Sbjct: 454 RNFWRD 459
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,075,167
Number of extensions: 2369864
Number of successful extensions: 15052
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 14574
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 426
Effective length of database: 14,140,958
Effective search space: 6024048108
Effective search space used: 6024048108
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008270
(1600 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851014.1| PREDICTED: similar to extracellular matrix prot... 702 0.0
Alignment gi|XP_853907.1| PREDICTED: similar to CG13648-PA [Canis familia... 50 6e-06
>ref|XP_851014.1| PREDICTED: similar to extracellular matrix protein 1 isoform 1
precursor [Canis familiaris].
Length = 665
Score = 702 bits (1811), Expect = 0.0
Identities = 336/481 (69%), Positives = 372/481 (77%), Gaps = 22/481 (4%)
Frame = +1
Query: 178 GVSKAPGQRELGAEHL---LQEAGYAAPPSPPLSHTLPRDPPDTSQQSPHFEGQSEVQPS 348
G SKAPG+RE+G E L +QE GYAAPPSPP + L D P T Q H GQSE
Sbjct: 20 GGSKAPGKREMGPEPLAYHIQEVGYAAPPSPPRTQALSLDHPATPQHDFHSVGQSE---- 75
Query: 349 SSQEAIPFQQEELTPAQLPAEKKGDPPLLQET----------VPLQKEQSPP-------K 477
EA+ +EEL P QLP EKK DPPL QE VP+++E++PP
Sbjct: 76 ---EAVRAPEEELPPRQLPVEKKVDPPLPQEAIPQEELPRPQVPVEQEENPPFPLQEEMT 132
Query: 478 LPTEQKEKKPSSFMEHRPPEPGSWNAAQHCQPGRPRGGWGHRLDGFPPGRPSLDNMDQIC 657
P++Q+E+KP+ M+ PEP SWN AQHCQ GRPRGGWGHRLDGFPPG+PS DN+DQIC
Sbjct: 133 FPSKQREEKPAPPMDWSSPEPESWNPAQHCQQGRPRGGWGHRLDGFPPGQPSPDNVDQIC 192
Query: 658 LPNRQHVVYGPWNLPQTGFSHLSRQGEALNLLETGYSRCCRCHNYIHRLDCAKLVWEDAM 837
LPNRQ VVYGPWNLPQ+GFSHL+RQGE LNLLET YSRCCRCH++ +RLDCAKLVWEDAM
Sbjct: 193 LPNRQRVVYGPWNLPQSGFSHLTRQGETLNLLETRYSRCCRCHSHTNRLDCAKLVWEDAM 252
Query: 838 TRFCEAEFSVKTRPHGCCKRQGEARFSCFQEEAPRPHYQLRACPSHQPGISSGXXXXXXX 1017
TRFCEAEFSVKTRPH CCK+QGEARFSCFQEEAPRPHYQLRACPSHQPGISSG
Sbjct: 253 TRFCEAEFSVKTRPHRCCKQQGEARFSCFQEEAPRPHYQLRACPSHQPGISSGPELPFPP 312
Query: 1018 XXXTLDNIKNICHLRRFRSVPRNLPATDPIQRQLHALTQLEGEFQRCCQQGNNHTCTWKA 1197
TLDNIKNICHLRRFRSVPRNLPATDPIQRQL L QLEGEFQRCC+QGNNHTCTWKA
Sbjct: 313 GVPTLDNIKNICHLRRFRSVPRNLPATDPIQRQLQTLIQLEGEFQRCCRQGNNHTCTWKA 372
Query: 1198 WEDALDGYCNQEQATKTHRHLCCHHPPSPARDECFARQAPYPNYDRDILALDLSRVTPNL 1377
WE+ALDGYC +EQA KTH H CCHHPPSPARDECFARQAPYPNYDRDIL LD S+VTPNL
Sbjct: 373 WEEALDGYCEREQAIKTHHHSCCHHPPSPARDECFARQAPYPNYDRDILTLDFSQVTPNL 432
Query: 1378 MSHLCGNRRVLTQHKQIPGLIQNMTVRCCDVPFPXXXXXXXXXKQPY-RHLCGAEK-VWR 1551
M HLCGN R+LT+HKQIPGLI+NMT CCD+PFP K + LCG+ + WR
Sbjct: 433 MQHLCGNGRLLTKHKQIPGLIRNMTAHCCDLPFPEQACCAEEEKSAFIADLCGSRRNFWR 492
Query: 1552 D 1554
D
Sbjct: 493 D 493
>ref|XP_853907.1| PREDICTED: similar to CG13648-PA [Canis familiaris].
Length = 1709
Score = 50.1 bits (118), Expect = 6e-06
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Frame = +1
Query: 289 PPDTSQQSPHFEGQSEVQPSSSQEAIPFQQEELTPAQLPAEKKG-DPPLLQETVPLQKEQ 465
P T Q++P +GQ P +S+E PF ++ PAQ P +G PPL QE P Q Q
Sbjct: 541 PSSTQQEAPTHQGQ---HPQTSEEVAPFPIQQEAPAQHPQSSEGIKPPLTQEESPTQHPQ 597
Query: 466 SPPK-LPTEQKEKKPSSF---MEHRPPEPGSWNA-AQHCQP 573
+P + P+ + + P+ + +E P P A QH P
Sbjct: 598 TPEEGEPSPTQTETPAKYAESLEGTEPVPAQSEATVQHPNP 638
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,201,337
Number of extensions: 2444540
Number of successful extensions: 15687
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 15276
Number of HSP's successfully gapped: 2
Length of query: 533
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 425
Effective length of database: 15,274,216
Effective search space: 6491541800
Effective search space used: 6491541800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008270
(1600 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355250.1| PREDICTED: extracellular matrix protein 1, p... 913 0.0
>ref|XP_003355250.1| PREDICTED: extracellular matrix protein 1, partial [Sus scrofa].
Length = 488
Score = 913 bits (2359), Expect = 0.0
Identities = 430/479 (89%), Positives = 432/479 (90%), Gaps = 23/479 (4%)
Frame = +1
Query: 112 MGTTSRXXXXXXXXXXXXXXPEGVSKAPGQRELGAEHLLQEAGYAAPPSPPLSHTLPRDP 291
MGTTSR PEGVSKAPGQRELGAEHLLQEAGYAAPPSPPLSHTLPRDP
Sbjct: 1 MGTTSRAALVLAYLAVASVVPEGVSKAPGQRELGAEHLLQEAGYAAPPSPPLSHTLPRDP 60
Query: 292 PDTSQQSPHFEGQSEVQPSSSQEAIPFQQEELTPAQLPAEKKGDPPLLQETVPLQKEQSP 471
PDTSQQSPHFEGQSEVQPSSSQEAIPFQQEELTPAQLPAEKKGDPPLLQETVPLQKEQSP
Sbjct: 61 PDTSQQSPHFEGQSEVQPSSSQEAIPFQQEELTPAQLPAEKKGDPPLLQETVPLQKEQSP 120
Query: 472 PKLPTEQKE-----------------------KKPSSFMEHRPPEPGSWNAAQHCQPGRP 582
PKLPTEQKE +KPSSFMEHRPPEPGSWNAAQHCQPGRP
Sbjct: 121 PKLPTEQKENPSFLHQEEMTFQSKHRENSHSEEKPSSFMEHRPPEPGSWNAAQHCQPGRP 180
Query: 583 RGGWGHRLDGFPPGRPSLDNMDQICLPNRQHVVYGPWNLPQTGFSHLSRQGEALNLLETG 762
RGGWGHRLDGFPPGRPSLDNMDQICLPNRQHVVYGPWNLPQTGFSHLSRQGEALNLLETG
Sbjct: 181 RGGWGHRLDGFPPGRPSLDNMDQICLPNRQHVVYGPWNLPQTGFSHLSRQGEALNLLETG 240
Query: 763 YSRCCRCHNYIHRLDCAKLVWEDAMTRFCEAEFSVKTRPHGCCKRQGEARFSCFQEEAPR 942
YSRCCRCHNYIHRLDCAKLVWEDAMTRFCEAEFSVKTRPHGCCKRQGEARFSCFQEEAPR
Sbjct: 241 YSRCCRCHNYIHRLDCAKLVWEDAMTRFCEAEFSVKTRPHGCCKRQGEARFSCFQEEAPR 300
Query: 943 PHYQLRACPSHQPGISSGXXXXXXXXXXTLDNIKNICHLRRFRSVPRNLPATDPIQRQLH 1122
PHYQLRACPSHQPGISSG TLDNIKNICHLRRFRSVPRNLPATDPIQRQLH
Sbjct: 301 PHYQLRACPSHQPGISSGPELPFPPGPPTLDNIKNICHLRRFRSVPRNLPATDPIQRQLH 360
Query: 1123 ALTQLEGEFQRCCQQGNNHTCTWKAWEDALDGYCNQEQATKTHRHLCCHHPPSPARDECF 1302
ALTQLEGEFQRCCQQGNNHTCTWKAWEDALDGYCNQEQATKTHRHLCCHHPPSPARDECF
Sbjct: 361 ALTQLEGEFQRCCQQGNNHTCTWKAWEDALDGYCNQEQATKTHRHLCCHHPPSPARDECF 420
Query: 1303 ARQAPYPNYDRDILALDLSRVTPNLMSHLCGNRRVLTQHKQIPGLIQNMTVRCCDVPFP 1479
ARQAPYPNYDRDILALDLSRVTPNLMSHLCGNRRVLT+HKQIPGLIQNMTVRCCDVPFP
Sbjct: 421 ARQAPYPNYDRDILALDLSRVTPNLMSHLCGNRRVLTKHKQIPGLIQNMTVRCCDVPFP 479
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,016,410
Number of extensions: 1538233
Number of successful extensions: 9795
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9510
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 429
Effective length of database: 8,754,644
Effective search space: 3755742276
Effective search space used: 3755742276
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008270
(1600 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031925.2| extracellular matrix protein 1 precursor [Mus m... 620 e-178
>ref|NP_031925.2| extracellular matrix protein 1 precursor [Mus musculus].
Length = 559
Score = 620 bits (1600), Expect = e-178
Identities = 309/502 (61%), Positives = 349/502 (69%), Gaps = 21/502 (4%)
Frame = +1
Query: 112 MGTTSRXXXXXXXXXXXXXXPEGVSKAPGQRELGAEHLLQ---EAGYAAPPSPPLSHTLP 282
MGT SR EG KA QRE+ E L Q E GYAAPPSPP + L
Sbjct: 1 MGTVSRAALILACLALASAASEGAFKASDQREMTPERLFQHLHEVGYAAPPSPPQTRRLR 60
Query: 283 RDPPDTSQQSPH-FEGQSEVQPSSSQEAIPFQQEELTPAQLPAEKKGDPPLLQETVPLQK 459
D TS P FE Q EVQP SS E IP +E+ P K P + QE +PLQK
Sbjct: 61 VDHSVTSLHDPPLFEEQREVQPPSSPEDIPVYEEDWPTFLNPNVDKAGPAVPQEAIPLQK 120
Query: 460 EQSPPKLPTEQKE---------------KKPSSFMEHRPPEPGSWNAAQHCQPGRPRGGW 594
EQ PP++ EQKE KP + PPEP +WN A+HCQ GR RG W
Sbjct: 121 EQPPPQVHIEQKEIDPPAQPQEEIVQKEVKPHTLAGQLPPEPRTWNPARHCQQGR-RGVW 179
Query: 595 GHRLDGFPPGRPSLDNMDQICLPNRQHVVYGPWNLPQTGFSHLSRQGEALNLLETGYSRC 774
GHRLDGFPPGRPS DN+ QICLP RQHV+YGPWNLPQTG+SHLSRQGE LN+LETGYSRC
Sbjct: 180 GHRLDGFPPGRPSPDNLKQICLPERQHVIYGPWNLPQTGYSHLSRQGETLNVLETGYSRC 239
Query: 775 CRCHNYIHRLDCAKLVWEDAMTRFCEAEFSVKTRPHGCCKRQGEARFSCFQEEAPRPHYQ 954
CRC + +RLDC KLVWEDAMT+FCEAEFSVKTRPH CC+ +GE RFSCFQ+EAPRP Y
Sbjct: 240 CRCRSDTNRLDCLKLVWEDAMTQFCEAEFSVKTRPHLCCRLRGEERFSCFQKEAPRPDYL 299
Query: 955 LRACPSHQPGISSGXXXXXXXXXXTLDNIKNICHLRRFRSVPRNLPATDPIQRQLHALTQ 1134
LR CP HQ G+SSG T DN+KNIC LRRFR+VPRNLPATD IQRQL ALT+
Sbjct: 300 LRPCPVHQNGMSSGPQLPFPPGLPTPDNVKNICLLRRFRAVPRNLPATDAIQRQLQALTR 359
Query: 1135 LEGEFQRCCQQGNNHTCTWKAWEDALDGYCNQEQATKTHRHLCCHHPPSPARDECFARQA 1314
LE EFQRCC+QG+NHTCTWKAWE LDGYC +E A KTH H CCH+PPSPARDECFA A
Sbjct: 360 LETEFQRCCRQGHNHTCTWKAWEGTLDGYCERELAIKTHPHSCCHYPPSPARDECFAHLA 419
Query: 1315 PYPNYDRDILALDLSRVTPNLMSHLCGNRRVLTQHKQIPGLIQNMTVRCCDVPFPXXXXX 1494
PYPNYDRDIL LDLSRVTPNLM LCG+ RVL++HKQIPGLIQNMT+RCC++P+P
Sbjct: 420 PYPNYDRDILTLDLSRVTPNLMGQLCGSGRVLSKHKQIPGLIQNMTIRCCELPYPEQACC 479
Query: 1495 XXXXKQPY-RHLCGAEK-VWRD 1554
K + +LCG + W+D
Sbjct: 480 GEEEKLAFIENLCGPRRNSWKD 501
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,037,957
Number of extensions: 1960749
Number of successful extensions: 11501
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11091
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 427
Effective length of database: 12,433,743
Effective search space: 5309208261
Effective search space used: 5309208261
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008270
(1600 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004416.2| extracellular matrix protein 1 isoform 1 precur... 714 0.0
Alignment gi|NP_001189787.1| extracellular matrix protein 1 isoform 3 pre... 697 0.0
Alignment gi|NP_073155.2| extracellular matrix protein 1 isoform 2 precur... 357 2e-98
>ref|NP_004416.2| extracellular matrix protein 1 isoform 1 precursor [Homo sapiens].
Length = 540
Score = 714 bits (1842), Expect = 0.0
Identities = 336/483 (69%), Positives = 373/483 (77%), Gaps = 2/483 (0%)
Frame = +1
Query: 112 MGTTSRXXXXXXXXXXXXXXPEGVSKAPGQRELGAEHLLQEAGYAAPPSPPLSHTLPRDP 291
MGTT+R EG A GQR+L EH QE GYAAPPSPPLS +LP D
Sbjct: 1 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHF-QEVGYAAPPSPPLSRSLPMDH 59
Query: 292 PDTSQQSPHFEGQSEVQPSSSQEAIPFQQEELTPAQLPAEKKGDPPLLQETVPLQKEQSP 471
PD+SQ P FEGQS+VQP SQEA P QQE+L PAQLPAEK+ PPL QE VPLQKE
Sbjct: 60 PDSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPS 119
Query: 472 PKLPTEQKEKKPSSFMEHRPPEPGSWNAAQHCQPGRPRGGWGHRLDGFPPGRPSLDNMDQ 651
+ P EQKE P+ F + PEP SWNAAQHCQ R +GGWGHRLDGFPPGRPS DN++Q
Sbjct: 120 LQHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQ 179
Query: 652 ICLPNRQHVVYGPWNLPQTGFSHLSRQGEALNLLETGYSRCCRCHNYIHRLDCAKLVWED 831
ICLPNRQHVVYGPWNLPQ+ +SHL+RQGE LN LE GYSRCC C ++ +RL+CAKLVWE+
Sbjct: 180 ICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEE 239
Query: 832 AMTRFCEAEFSVKTRPHGCCKRQGEARFSCFQEEAPRPHYQLRACPSHQPGISSGXXXXX 1011
AM+RFCEAEFSVKTRPH CC RQGEARFSCFQEEAP+PHYQLRACPSHQP ISSG
Sbjct: 240 AMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPF 299
Query: 1012 XXXXXTLDNIKNICHLRRFRSVPRNLPATDPIQRQLHALTQLEGEFQRCCQQGNNHTCTW 1191
TLDNIKNICHLRRFRSVPRNLPATDP+QR+L AL QLE EFQRCC+QGNNHTCTW
Sbjct: 300 PPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTW 359
Query: 1192 KAWEDALDGYCNQEQATKTHRHLCCHHPPSPARDECFARQAPYPNYDRDILALDLSRVTP 1371
KAWED LD YC++E A KTH HLCC HPPSP RDECFAR+APYPNYDRDIL +D+ RVTP
Sbjct: 360 KAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTP 419
Query: 1372 NLMSHLCGNRRVLTQHKQIPGLIQNMTVRCCDVPFPXXXXXXXXXKQPY-RHLCGAEK-V 1545
NLM HLCGN+RVLT+HK IPGLI NMT RCCD+PFP K + LCG + +
Sbjct: 420 NLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNI 479
Query: 1546 WRD 1554
WRD
Sbjct: 480 WRD 482
>ref|NP_001189787.1| extracellular matrix protein 1 isoform 3 precursor [Homo sapiens].
Length = 567
Score = 697 bits (1800), Expect = 0.0
Identities = 336/510 (65%), Positives = 372/510 (72%), Gaps = 29/510 (5%)
Frame = +1
Query: 112 MGTTSRXXXXXXXXXXXXXXPEGVSKAPGQRELGAEHLLQEAGYAAPPSPPLSHTLPRDP 291
MGTT+R EG A GQR+L EH QE GYAAPPSPPLS +LP D
Sbjct: 1 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHF-QEVGYAAPPSPPLSRSLPMDH 59
Query: 292 PDTSQQSPHFEGQSE---------------------------VQPSSSQEAIPFQQEELT 390
PD+SQ P FEGQS VQP SQEA P QQE+L
Sbjct: 60 PDSSQHGPPFEGQSGKEGRGPRPHSQPWLGERVGCSHIPPSIVQPPPSQEATPLQQEKLL 119
Query: 391 PAQLPAEKKGDPPLLQETVPLQKEQSPPKLPTEQKEKKPSSFMEHRPPEPGSWNAAQHCQ 570
PAQLPAEK+ PPL QE VPLQKE + P EQKE P+ F + PEP SWNAAQHCQ
Sbjct: 120 PAQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQ 179
Query: 571 PGRPRGGWGHRLDGFPPGRPSLDNMDQICLPNRQHVVYGPWNLPQTGFSHLSRQGEALNL 750
R +GGWGHRLDGFPPGRPS DN++QICLPNRQHVVYGPWNLPQ+ +SHL+RQGE LN
Sbjct: 180 QDRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNF 239
Query: 751 LETGYSRCCRCHNYIHRLDCAKLVWEDAMTRFCEAEFSVKTRPHGCCKRQGEARFSCFQE 930
LE GYSRCC C ++ +RL+CAKLVWE+AM+RFCEAEFSVKTRPH CC RQGEARFSCFQE
Sbjct: 240 LEIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQE 299
Query: 931 EAPRPHYQLRACPSHQPGISSGXXXXXXXXXXTLDNIKNICHLRRFRSVPRNLPATDPIQ 1110
EAP+PHYQLRACPSHQP ISSG TLDNIKNICHLRRFRSVPRNLPATDP+Q
Sbjct: 300 EAPQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQ 359
Query: 1111 RQLHALTQLEGEFQRCCQQGNNHTCTWKAWEDALDGYCNQEQATKTHRHLCCHHPPSPAR 1290
R+L AL QLE EFQRCC+QGNNHTCTWKAWED LD YC++E A KTH HLCC HPPSP R
Sbjct: 360 RELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTR 419
Query: 1291 DECFARQAPYPNYDRDILALDLSRVTPNLMSHLCGNRRVLTQHKQIPGLIQNMTVRCCDV 1470
DECFAR+APYPNYDRDIL +D+ RVTPNLM HLCGN+RVLT+HK IPGLI NMT RCCD+
Sbjct: 420 DECFARRAPYPNYDRDILTIDIGRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDL 479
Query: 1471 PFPXXXXXXXXXKQPY-RHLCGAEK-VWRD 1554
PFP K + LCG + +WRD
Sbjct: 480 PFPEQACCAEEEKLTFINDLCGPRRNIWRD 509
>ref|NP_073155.2| extracellular matrix protein 1 isoform 2 precursor [Homo sapiens].
Length = 415
Score = 357 bits (916), Expect = 2e-98
Identities = 171/281 (60%), Positives = 199/281 (70%), Gaps = 1/281 (0%)
Frame = +1
Query: 112 MGTTSRXXXXXXXXXXXXXXPEGVSKAPGQRELGAEHLLQEAGYAAPPSPPLSHTLPRDP 291
MGTT+R EG A GQR+L EH QE GYAAPPSPPLS +LP D
Sbjct: 1 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHF-QEVGYAAPPSPPLSRSLPMDH 59
Query: 292 PDTSQQSPHFEGQSEVQPSSSQEAIPFQQEELTPAQLPAEKKGDPPLLQETVPLQKEQSP 471
PD+SQ P FEGQS+VQP SQEA P QQE+L PAQLPAEK+ PPL QE VPLQKE
Sbjct: 60 PDSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPS 119
Query: 472 PKLPTEQKEKKPSSFMEHRPPEPGSWNAAQHCQPGRPRGGWGHRLDGFPPGRPSLDNMDQ 651
+ P EQKE P+ F + PEP SWNAAQHCQ R +GGWGHRLDGFPPGRPS DN++Q
Sbjct: 120 LQHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQ 179
Query: 652 ICLPNRQHVVYGPWNLPQTGFSHLSRQGEALNLLETGYSRCCRCHNYIHRLDCAKLVWED 831
ICLPNRQHVVYGPWNLPQ+ +SHL+RQGE LN LE GYSRCC C ++ +RL+CAKLVWED
Sbjct: 180 ICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWED 239
Query: 832 AMTRFCEAEFSVKTRPHGCCKR-QGEARFSCFQEEAPRPHY 951
+ ++C+ E++VKT H CC+ R CF AP P+Y
Sbjct: 240 TLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNY 280
Score = 199 bits (505), Expect = 8e-51
Identities = 100/183 (54%), Positives = 115/183 (62%), Gaps = 9/183 (4%)
Frame = +1
Query: 1033 DNIKNICHLRRFRSV--PRNLPATD--PIQRQLHALTQLEGEFQRCCQ---QGNNHTCTW 1191
DN+ IC R V P NLP + + RQ L LE + RCC N C
Sbjct: 175 DNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAK 234
Query: 1192 KAWEDALDGYCNQEQATKTHRHLCCHHPPSPARDECFARQAPYPNYDRDILALDLSRVTP 1371
WED LD YC++E A KTH HLCC HPPSP RDECFAR+APYPNYDRDIL +D+ RVTP
Sbjct: 235 LVWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTP 294
Query: 1372 NLMSHLCGNRRVLTQHKQIPGLIQNMTVRCCDVPFPXXXXXXXXXKQPY-RHLCGAEK-V 1545
NLM HLCGN+RVLT+HK IPGLI NMT RCCD+PFP K + LCG + +
Sbjct: 295 NLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNI 354
Query: 1546 WRD 1554
WRD
Sbjct: 355 WRD 357
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,627,050
Number of extensions: 2378995
Number of successful extensions: 14733
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 14175
Number of HSP's successfully gapped: 4
Length of query: 533
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 426
Effective length of database: 14,770,016
Effective search space: 6292026816
Effective search space used: 6292026816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008270
(1600 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 745 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 745 bits (376), Expect = 0.0
Identities = 376/376 (100%)
Strand = Plus / Minus
Query: 822 gtgggaggacgcgatgacccggttctgtgaggccgagttctcggtcaagacccgacccca 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906252 gtgggaggacgcgatgacccggttctgtgaggccgagttctcggtcaagacccgacccca 107906193
Query: 882 cgggtgctgcaaacggcagggggaggctcgattctcctgcttccaggaggaagctccccg 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906192 cgggtgctgcaaacggcagggggaggctcgattctcctgcttccaggaggaagctccccg 107906133
Query: 942 gccacactaccagctccgggcctgccccagccaccagcccggtatttcctcgggccccga 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906132 gccacactaccagctccgggcctgccccagccaccagcccggtatttcctcgggccccga 107906073
Query: 1002 gctgccttttccccctgggccacccacactggacaatatcaagaacatctgccacctaag 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906072 gctgccttttccccctgggccacccacactggacaatatcaagaacatctgccacctaag 107906013
Query: 1062 acgcttccgctccgtgccacgcaacctcccagctactgaccccatccaaaggcagctgca 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906012 acgcttccgctccgtgccacgcaacctcccagctactgaccccatccaaaggcagctgca 107905953
Query: 1122 tgctctgacccagctggagggggagttccagcgctgttgccagcaggggaacaaccacac 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107905952 tgctctgacccagctggagggggagttccagcgctgttgccagcaggggaacaaccacac 107905893
Query: 1182 ctgtacatggaaggcc 1197
||||||||||||||||
Sbjct: 107905892 ctgtacatggaaggcc 107905877
Score = 583 bits (294), Expect = e-163
Identities = 311/319 (97%)
Strand = Plus / Minus
Query: 504 gccatcttccttcatggagcacagacccccagagcctgggtcttggaatgcagcccagca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906831 gccatcttccttcatggagcacagacccccagagcctgggtcttggaatgcagcccagca 107906772
Query: 564 ctgccaaccgggccgaccccgtgggggctggggccaccggctggatggcttnnnnnnngg 623
||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 107906771 ctgccaaccgggccgaccccgtgggggctggggccaccggctggatggcttcccccccgg 107906712
Query: 624 acgaccttctctggataatatggaccagatttgccttcctaatcgtcagcatgtggtgta 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906711 acgaccttctctggataatatggaccagatttgccttcctaatcgtcagcatgtggtgta 107906652
Query: 684 tggcccttggaacctaccgcagactggcttttcccaccttagtcgccagggtgaggccct 743
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906651 tggcccttggaacctgccgcagactggcttttcccaccttagtcgccagggtgaggccct 107906592
Query: 744 caatttgctggagaccggatattctcgatgctgccgctgtcacaactacatacaccgctt 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107906591 caatttgctggagaccggatattctcgatgctgccgctgtcacaactacatacaccgctt 107906532
Query: 804 ggactgtgcaaaactcgtg 822
|||||||||||||||||||
Sbjct: 107906531 ggactgtgcaaaactcgtg 107906513
Score = 430 bits (217), Expect = e-117
Identities = 220/221 (99%)
Strand = Plus / Minus
Query: 1198 tgggaggatgcccttgatggatactgtaatcaggaacaggctacaaagacccaccgccac 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107905356 tgggaggatgcccttgatggatactgtaatcaggaacaggctacaaagacccaccgccac 107905297
Query: 1258 ttgtgttgccaccaccctcctagccctgcccgcgatgagtgctttgcccgtcaggctccc 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107905296 ttgtgttgccaccaccctcctagccctgcccgcgatgagtgctttgcccgtcaggctccc 107905237
Query: 1318 tatcccaactacgaccgggacatcttggctcttgacctcagccgagtcacccccaacctc 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107905236 tatcccaactacgaccgggacatcttggctcttgacctcagccgagtcacccccaacctc 107905177
Query: 1378 atgagtcatctctgtggcaatcgaagagttctcacccaaca 1418
|||||||||||||||||||||||||||||||||||| ||||
Sbjct: 107905176 atgagtcatctctgtggcaatcgaagagttctcaccaaaca 107905136
Score = 359 bits (181), Expect = 3e-96
Identities = 181/181 (100%)
Strand = Plus / Minus
Query: 1 gttcacaacggcagtgacagcaactggacaagcaggctcccagctgtccagcccttcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107909529 gttcacaacggcagtgacagcaactggacaagcaggctcccagctgtccagcccttcaga 107909470
Query: 61 tctgcctgagaggacctacctgggttgccaccgaccagcccttgccccaggatggggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107909469 tctgcctgagaggacctacctgggttgccaccgaccagcccttgccccaggatggggacc 107909410
Query: 121 acgtccagagcagccttggtcttggcctatttggctgttgcttctgtagtcccagaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107909409 acgtccagagcagccttggtcttggcctatttggctgttgcttctgtagtcccagaggga 107909350
Query: 181 g 181
|
Sbjct: 107909349 g 107909349
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 234 agctggctatgctgcacccccttccccacccctgagccacactctccccagggatccccc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107908014 agctggctatgctgcacccccttccccacccctgagccacactctccccagggatccccc 107907955
Query: 294 tgacacttctcagcagagccctcactttgagggacagagtgaag 337
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107907954 tgacacttctcagcagagccctcactttgagggacagagtgaag 107907911
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 336 agtgcagccctcttcctctcaggaagccatcccattccagcaggaggagctgacccctgc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107907813 agtgcagccctcttcctctcaggaagccatcccattccagcaggaggagctgacccctgc 107907754
Query: 396 ccaactccctgcggaaaagaaagg 419
||||||||||||||||||||||||
Sbjct: 107907753 ccaactccctgcggaaaagaaagg 107907730
Score = 159 bits (80), Expect = 6e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 417 aggggatcctcctctccttcaagaaactgtgcccctccaaaaagagcagtcccctcccaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107907637 aggggatcctcctctccttcaagaaactgtgcccctccaaaaagagcagtcccctcccaa 107907578
Query: 477 gctccctacagaacagaagg 496
||||||||||||||||||||
Sbjct: 107907577 gctccctacagaacagaagg 107907558
Score = 151 bits (76), Expect = 1e-33
Identities = 85/88 (96%)
Strand = Plus / Minus
Query: 1419 taagcagattcctgggctgatccagaacatgacagtccgatgctgtgatgtgccgtttcc 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107904993 taagcagattcctgggctgatccagaacatgacagtccgatgctgtgatgtgccgtttcc 107904934
Query: 1479 agaagcagcctgctgtgctgaggaggag 1506
||| ||||||||||||||||||||||
Sbjct: 107904933 agagcaagcctgctgtgctgaggaggag 107904906
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 180 agtttccaaggctccagggcaaagggagctgggggcagagcacctccttcaagaag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107908150 agtttccaaggctccagggcaaagggagctgggggcagagcacctccttcaagaag 107908095
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,221,051
Number of extensions: 304
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 9
Length of query: 1600
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1578
Effective length of database: 2,808,408,574
Effective search space: 4431668729772
Effective search space used: 4431668729772
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)