Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008280
(1328 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106750.1| pleckstrin homology domain containing, famil... 371 e-103
Alignment gi|NP_001106749.1| pleckstrin homology domain containing, famil... 353 2e-97
Alignment gi|NP_001039568.1| pleckstrin homology domain containing, famil... 346 2e-95
Alignment gi|NP_001106751.1| pleckstrin homology domain containing, famil... 328 5e-90
Alignment gi|XP_002689525.1| PREDICTED: pleckstrin homology domain contai... 129 8e-30
Alignment gi|XP_001250874.1| PREDICTED: pleckstrin homology domain contai... 129 8e-30
Alignment gi|XP_591153.1| PREDICTED: pleckstrin homology domain containin... 129 8e-30
Alignment gi|NP_001076998.1| pleckstrin homology domain-containing family... 126 5e-29
>ref|NP_001106750.1| pleckstrin homology domain containing, family B (evectins) member 1
isoform c [Bos taurus].
Length = 208
Score = 371 bits (952), Expect = e-103
Identities = 173/202 (85%), Positives = 176/202 (87%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPDS LESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDSTLESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTALLEA
Sbjct: 67 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALLEA 126
Query: 505 NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXX 684
NSTPVRVYSPYQDYYEVVPPNAHE TYVRSYYGPPY GPGVTHVVVREDP YS+
Sbjct: 127 NSTPVRVYSPYQDYYEVVPPNAHETTYVRSYYGPPYVGPGVTHVVVREDPCYSAGAPLAM 186
Query: 685 XXXXXXXXXXXXXXXXWSPCWF 750
WSPCWF
Sbjct: 187 GMLAGAATGAALGSLMWSPCWF 208
>ref|NP_001106749.1| pleckstrin homology domain containing, family B (evectins) member 1
isoform a [Bos taurus].
Length = 243
Score = 353 bits (906), Expect = 2e-97
Identities = 173/237 (72%), Positives = 176/237 (74%), Gaps = 35/237 (14%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPDS LESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDSTLESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTALLEA
Sbjct: 67 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALLEA 126
Query: 505 NSTP-----------------------------------VRVYSPYQDYYEVVPPNAHEA 579
NSTP VRVYSPYQDYYEVVPPNAHE
Sbjct: 127 NSTPAPAGATVPPRSRRVCPKVRCVTRSWSPCKVERRIWVRVYSPYQDYYEVVPPNAHET 186
Query: 580 TYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
TYVRSYYGPPY GPGVTHVVVREDP YS+ WSPCWF
Sbjct: 187 TYVRSYYGPPYVGPGVTHVVVREDPCYSAGAPLAMGMLAGAATGAALGSLMWSPCWF 243
>ref|NP_001039568.1| pleckstrin homology domain containing, family B (evectins) member 1
isoform d [Bos taurus].
Length = 189
Score = 346 bits (888), Expect = 2e-95
Identities = 161/189 (85%), Positives = 164/189 (86%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
ECHDVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTALLEANSTPVRVYSPYQD
Sbjct: 61 ECHDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALLEANSTPVRVYSPYQD 120
Query: 544 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXX 723
YYEVVPPNAHE TYVRSYYGPPY GPGVTHVVVREDP YS+
Sbjct: 121 YYEVVPPNAHETTYVRSYYGPPYVGPGVTHVVVREDPCYSAGAPLAMGMLAGAATGAALG 180
Query: 724 XXXWSPCWF 750
WSPCWF
Sbjct: 181 SLMWSPCWF 189
>ref|NP_001106751.1| pleckstrin homology domain containing, family B (evectins) member 1
isoform b [Bos taurus].
Length = 224
Score = 328 bits (842), Expect = 5e-90
Identities = 161/224 (71%), Positives = 164/224 (73%), Gaps = 35/224 (15%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTP--------- 516
ECHDVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTALLEANSTP
Sbjct: 61 ECHDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALLEANSTPAPAGATVPP 120
Query: 517 --------------------------VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 618
VRVYSPYQDYYEVVPPNAHE TYVRSYYGPPY G
Sbjct: 121 RSRRVCPKVRCVTRSWSPCKVERRIWVRVYSPYQDYYEVVPPNAHETTYVRSYYGPPYVG 180
Query: 619 PGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
PGVTHVVVREDP YS+ WSPCWF
Sbjct: 181 PGVTHVVVREDPCYSAGAPLAMGMLAGAATGAALGSLMWSPCWF 224
>ref|XP_002689525.1| PREDICTED: pleckstrin homology domain containing, family B
(evectins) member 2-like [Bos taurus].
Length = 221
Score = 129 bits (323), Expect = 8e-30
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY D+T Q ED+V + +I++G
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSVEDKVPMPVGCINIRMGH 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
EC D+QPP+G+ +D +L V R+G + LCAE+ DD LAWK L ++ + V S
Sbjct: 61 ECRDIQPPDGKPKDRMLQVVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSEVM- 119
Query: 544 YYEVV------PPNAHEATYVRSYYGPPYAG--PGVTHVV 639
Y E P A+ A +Y PY+G P T VV
Sbjct: 120 YDETAVASSPPPYTAYAAPTPEAYGYGPYSGAYPPGTQVV 159
>ref|XP_001250874.1| PREDICTED: pleckstrin homology domain containing, family B
(evectins) member 2-like [Bos taurus].
Length = 221
Score = 129 bits (323), Expect = 8e-30
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY D+T Q ED+V + +I++G
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSVEDKVPMPVGCINIRMGH 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
EC D+QPP+G+ +D +L V R+G + LCAE+ DD LAWK L ++ + V S
Sbjct: 61 ECRDIQPPDGKPKDRMLQVVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSEVM- 119
Query: 544 YYEVV------PPNAHEATYVRSYYGPPYAG--PGVTHVV 639
Y E P A+ A +Y PY+G P T VV
Sbjct: 120 YDETAVASSPPPYTAYAAPTPEAYGYGPYSGAYPPGTQVV 159
>ref|XP_591153.1| PREDICTED: pleckstrin homology domain containing, family B
(evectins) member 2-like [Bos taurus].
Length = 221
Score = 129 bits (323), Expect = 8e-30
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 8/160 (5%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY D+T Q ED+V + +I++G
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSVEDKVPMPVGCINIRMGH 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
EC D+QPP+G+ +D +L V R+G + LCAE+ DD LAWK L ++ + V S
Sbjct: 61 ECRDIQPPDGKPKDRMLQVVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSEVM- 119
Query: 544 YYEVV------PPNAHEATYVRSYYGPPYAG--PGVTHVV 639
Y E P A+ A +Y PY+G P T VV
Sbjct: 120 YDETAVASSPPPYTAYAAPTPEAYGYGPYSGAYPPGTQVV 159
>ref|NP_001076998.1| pleckstrin homology domain-containing family B member 2 [Bos
taurus].
Length = 222
Score = 126 bits (316), Expect = 5e-29
Identities = 68/176 (38%), Positives = 95/176 (53%), Gaps = 18/176 (10%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY +T Q ED+V + + +I++G+
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDAQTRQSVEDKVHMPVDCINIRMGR 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYS---- 531
EC D+QPP+G+ +D +L + R+G + LCAE+ DD LAWK L ++ + V S
Sbjct: 61 ECRDIQPPDGKPKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSEVMY 120
Query: 532 ----------PYQDYYEVVPPNAHEATYVRSYYGP----PYAGPGVTHVVVREDPY 657
PY Y P A+ Y P YA G + V + PY
Sbjct: 121 DETAVASSPPPYTAYAAPTPEQAYGYGPYSGAYPPGTQVVYAANGQAYAVPYQYPY 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,696,123
Number of extensions: 1515941
Number of successful extensions: 5855
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5824
Number of HSP's successfully gapped: 8
Length of query: 442
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 337
Effective length of database: 14,207,134
Effective search space: 4787804158
Effective search space used: 4787804158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008280
(1328 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850310.1| PREDICTED: similar to pleckstrin homology domai... 339 4e-93
Alignment gi|XP_861135.1| PREDICTED: similar to Pleckstrin homology domai... 160 3e-39
Alignment gi|XP_540978.2| PREDICTED: similar to pleckstrin homology domai... 124 2e-28
>ref|XP_850310.1| PREDICTED: similar to pleckstrin homology domain containing, family
B (evectins) member 1 isoform 1 [Canis familiaris].
Length = 242
Score = 339 bits (869), Expect = 4e-93
Identities = 169/237 (71%), Positives = 174/237 (73%), Gaps = 35/237 (14%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPD LESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDPILESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
LI FNVRDIKIGQEC DVQPPEGRSRDGLLTVNLREG+RLHLCAET+DDA+AWKTALLEA
Sbjct: 67 LIQFNVRDIKIGQECRDVQPPEGRSRDGLLTVNLREGSRLHLCAETKDDAIAWKTALLEA 126
Query: 505 NSTP-----------------------------------VRVYSPYQDYYEVVPPNAHEA 579
NSTP VRVYSPYQDYYEVVPPNAHEA
Sbjct: 127 NSTPAPAGATVPPRSRRVCPKVRCVTRSWSPCKVERRIWVRVYSPYQDYYEVVPPNAHEA 186
Query: 580 TYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
TY+RSYYG PYAGPGVTHVVVREDP YS+ WSPCWF
Sbjct: 187 TYIRSYYG-PYAGPGVTHVVVREDPCYSAGAPLAMGMLAGAATGAALGSLMWSPCWF 242
>ref|XP_861135.1| PREDICTED: similar to Pleckstrin homology domain-containing protein
family B member 1 (Pleckstrin homology domain retinal
protein 1) (PH domain containing protein in retina 1)
(PHRET1) isoform 2 [Canis familiaris].
Length = 103
Score = 160 bits (404), Expect = 3e-39
Identities = 73/80 (91%), Positives = 74/80 (92%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPD LESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDPILESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQP 384
LI FNVRDIKIGQEC +P
Sbjct: 67 LIQFNVRDIKIGQECRGEKP 86
>ref|XP_540978.2| PREDICTED: similar to pleckstrin homology domain containing, family
B (evectins) member 2 [Canis familiaris].
Length = 221
Score = 124 bits (312), Expect = 2e-28
Identities = 70/160 (43%), Positives = 93/160 (58%), Gaps = 8/160 (5%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY D+T Q ED+V + + +I+ G
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
EC D+QPP+G+ ++ +L + R+G + LCAE+ DD LAWK L ++ V S
Sbjct: 61 ECRDIQPPDGKPKECMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRINTAYVGSEVL- 119
Query: 544 YYEVV-----PPNAHEATYVRSYYG-PPYAG--PGVTHVV 639
Y E PP AT YG PY+G P T VV
Sbjct: 120 YDETTVASSPPPYTAYATPTPETYGCGPYSGAYPPGTQVV 159
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,957,041
Number of extensions: 1565793
Number of successful extensions: 6081
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6051
Number of HSP's successfully gapped: 3
Length of query: 442
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 336
Effective length of database: 15,340,888
Effective search space: 5154538368
Effective search space used: 5154538368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008280
(1328 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003129679.1| PREDICTED: pleckstrin homology domain-contai... 379 e-105
Alignment gi|XP_003357237.1| PREDICTED: pleckstrin homology domain-contai... 362 e-100
Alignment gi|XP_003129678.1| PREDICTED: pleckstrin homology domain-contai... 353 1e-97
Alignment gi|XP_003129680.1| PREDICTED: pleckstrin homology domain-contai... 335 3e-92
Alignment gi|XP_003362016.1| PREDICTED: pleckstrin homology domain-contai... 124 1e-28
>ref|XP_003129679.1| PREDICTED: pleckstrin homology domain-containing family B member
1-like isoform 2 [Sus scrofa].
Length = 208
Score = 379 bits (974), Expect = e-105
Identities = 179/202 (88%), Positives = 179/202 (88%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
LIHFNVRDIKIGQECH VQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA
Sbjct: 67 LIHFNVRDIKIGQECHAVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 126
Query: 505 NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXX 684
NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSS
Sbjct: 127 NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSGAPLAM 186
Query: 685 XXXXXXXXXXXXXXXXWSPCWF 750
WSPCWF
Sbjct: 187 GMLAGAATGAALGSLMWSPCWF 208
>ref|XP_003357237.1| PREDICTED: pleckstrin homology domain-containing family B member
1-like [Sus scrofa].
Length = 243
Score = 362 bits (928), Expect = e-100
Identities = 179/237 (75%), Positives = 179/237 (75%), Gaps = 35/237 (14%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
LIHFNVRDIKIGQECH VQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA
Sbjct: 67 LIHFNVRDIKIGQECHAVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 126
Query: 505 NSTP-----------------------------------VRVYSPYQDYYEVVPPNAHEA 579
NSTP VRVYSPYQDYYEVVPPNAHEA
Sbjct: 127 NSTPAPAGATVPPRSRRVCPKVRCVTRSWSPCKVERRIWVRVYSPYQDYYEVVPPNAHEA 186
Query: 580 TYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
TYVRSYYGPPYAGPGVTHVVVREDPYYSS WSPCWF
Sbjct: 187 TYVRSYYGPPYAGPGVTHVVVREDPYYSSGAPLAMGMLAGAATGAALGSLMWSPCWF 243
>ref|XP_003129678.1| PREDICTED: pleckstrin homology domain-containing family B member
1-like isoform 1 [Sus scrofa].
Length = 189
Score = 353 bits (906), Expect = 1e-97
Identities = 166/189 (87%), Positives = 166/189 (87%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
ECH VQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD
Sbjct: 61 ECHAVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 120
Query: 544 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXX 723
YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSS
Sbjct: 121 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSGAPLAMGMLAGAATGAALG 180
Query: 724 XXXWSPCWF 750
WSPCWF
Sbjct: 181 SLMWSPCWF 189
>ref|XP_003129680.1| PREDICTED: pleckstrin homology domain-containing family B member
1-like isoform 3 [Sus scrofa].
Length = 224
Score = 335 bits (860), Expect = 3e-92
Identities = 166/224 (74%), Positives = 166/224 (74%), Gaps = 35/224 (15%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTP--------- 516
ECH VQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTP
Sbjct: 61 ECHAVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPAPAGATVPP 120
Query: 517 --------------------------VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 618
VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG
Sbjct: 121 RSRRVCPKVRCVTRSWSPCKVERRIWVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 180
Query: 619 PGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
PGVTHVVVREDPYYSS WSPCWF
Sbjct: 181 PGVTHVVVREDPYYSSGAPLAMGMLAGAATGAALGSLMWSPCWF 224
>ref|XP_003362016.1| PREDICTED: pleckstrin homology domain-containing family B member
2-like, partial [Sus scrofa].
Length = 141
Score = 124 bits (311), Expect = 1e-28
Identities = 56/116 (48%), Positives = 78/116 (67%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY D+T Q ED+V + + +I+ G
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSVEDKVHMPVDCINIRTGH 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYS 531
EC D+QPP+G+ +D +L + R+G + LCAE+ DD LAWK L ++ + V S
Sbjct: 61 ECRDIQPPDGKPKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGS 116
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,075,223
Number of extensions: 981121
Number of successful extensions: 3873
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3852
Number of HSP's successfully gapped: 5
Length of query: 442
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 340
Effective length of database: 8,804,438
Effective search space: 2993508920
Effective search space used: 2993508920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008280
(1328 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156654.1| pleckstrin homology domain-containing family... 369 e-102
Alignment gi|NP_038774.1| pleckstrin homology domain-containing family B ... 351 6e-97
Alignment gi|NP_001156659.1| pleckstrin homology domain-containing family... 345 6e-95
Alignment gi|NP_001156657.1| pleckstrin homology domain-containing family... 345 6e-95
Alignment gi|NP_001156656.1| pleckstrin homology domain-containing family... 345 6e-95
Alignment gi|NP_001156658.1| pleckstrin homology domain-containing family... 327 1e-89
Alignment gi|NP_001156655.1| pleckstrin homology domain-containing family... 327 1e-89
Alignment gi|NP_663491.1| pleckstrin homology domain-containing family B ... 133 4e-31
>ref|NP_001156654.1| pleckstrin homology domain-containing family B member 1 isoform b
[Mus musculus].
Length = 208
Score = 369 bits (947), Expect = e-102
Identities = 171/202 (84%), Positives = 177/202 (87%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPDS LESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDSILESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
+IHFNVRDIK+GQEC DVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTAL+EA
Sbjct: 67 VIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEA 126
Query: 505 NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXX 684
NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHV+VREDP YSS
Sbjct: 127 NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSSGAPLAM 186
Query: 685 XXXXXXXXXXXXXXXXWSPCWF 750
WSPCWF
Sbjct: 187 GMLAGAATGAALGSLMWSPCWF 208
>ref|NP_038774.1| pleckstrin homology domain-containing family B member 1 isoform a
[Mus musculus].
Length = 243
Score = 351 bits (901), Expect = 6e-97
Identities = 171/237 (72%), Positives = 177/237 (74%), Gaps = 35/237 (14%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPDS LESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDSILESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
+IHFNVRDIK+GQEC DVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTAL+EA
Sbjct: 67 VIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEA 126
Query: 505 NSTP-----------------------------------VRVYSPYQDYYEVVPPNAHEA 579
NSTP VRVYSPYQDYYEVVPPNAHEA
Sbjct: 127 NSTPAPAGATVPPRSRRVCPKVRCTTLSWNPCKVERRIWVRVYSPYQDYYEVVPPNAHEA 186
Query: 580 TYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
TYVRSYYGPPYAGPGVTHV+VREDP YSS WSPCWF
Sbjct: 187 TYVRSYYGPPYAGPGVTHVIVREDPCYSSGAPLAMGMLAGAATGAALGSLMWSPCWF 243
>ref|NP_001156659.1| pleckstrin homology domain-containing family B member 1 isoform d
[Mus musculus].
Length = 189
Score = 345 bits (884), Expect = 6e-95
Identities = 159/189 (84%), Positives = 165/189 (87%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV+IHFNVRDIK+GQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
EC DVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTAL+EANSTPVRVYSPYQD
Sbjct: 61 ECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPVRVYSPYQD 120
Query: 544 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXX 723
YYEVVPPNAHEATYVRSYYGPPYAGPGVTHV+VREDP YSS
Sbjct: 121 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSSGAPLAMGMLAGAATGAALG 180
Query: 724 XXXWSPCWF 750
WSPCWF
Sbjct: 181 SLMWSPCWF 189
>ref|NP_001156657.1| pleckstrin homology domain-containing family B member 1 isoform d
[Mus musculus].
Length = 189
Score = 345 bits (884), Expect = 6e-95
Identities = 159/189 (84%), Positives = 165/189 (87%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV+IHFNVRDIK+GQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
EC DVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTAL+EANSTPVRVYSPYQD
Sbjct: 61 ECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPVRVYSPYQD 120
Query: 544 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXX 723
YYEVVPPNAHEATYVRSYYGPPYAGPGVTHV+VREDP YSS
Sbjct: 121 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSSGAPLAMGMLAGAATGAALG 180
Query: 724 XXXWSPCWF 750
WSPCWF
Sbjct: 181 SLMWSPCWF 189
>ref|NP_001156656.1| pleckstrin homology domain-containing family B member 1 isoform d
[Mus musculus].
Length = 189
Score = 345 bits (884), Expect = 6e-95
Identities = 159/189 (84%), Positives = 165/189 (87%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV+IHFNVRDIK+GQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
EC DVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTAL+EANSTPVRVYSPYQD
Sbjct: 61 ECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPVRVYSPYQD 120
Query: 544 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXX 723
YYEVVPPNAHEATYVRSYYGPPYAGPGVTHV+VREDP YSS
Sbjct: 121 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSSGAPLAMGMLAGAATGAALG 180
Query: 724 XXXWSPCWF 750
WSPCWF
Sbjct: 181 SLMWSPCWF 189
>ref|NP_001156658.1| pleckstrin homology domain-containing family B member 1 isoform c
[Mus musculus].
Length = 224
Score = 327 bits (838), Expect = 1e-89
Identities = 159/224 (70%), Positives = 165/224 (73%), Gaps = 35/224 (15%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV+IHFNVRDIK+GQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTP--------- 516
EC DVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTAL+EANSTP
Sbjct: 61 ECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPP 120
Query: 517 --------------------------VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 618
VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG
Sbjct: 121 RSRRVCPKVRCTTLSWNPCKVERRIWVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 180
Query: 619 PGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
PGVTHV+VREDP YSS WSPCWF
Sbjct: 181 PGVTHVIVREDPCYSSGAPLAMGMLAGAATGAALGSLMWSPCWF 224
>ref|NP_001156655.1| pleckstrin homology domain-containing family B member 1 isoform c
[Mus musculus].
Length = 224
Score = 327 bits (838), Expect = 1e-89
Identities = 159/224 (70%), Positives = 165/224 (73%), Gaps = 35/224 (15%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV+IHFNVRDIK+GQ
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTP--------- 516
EC DVQPPEGRSRDGLLTVNLREG+RLHLCAETRDDA+AWKTAL+EANSTP
Sbjct: 61 ECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPP 120
Query: 517 --------------------------VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 618
VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG
Sbjct: 121 RSRRVCPKVRCTTLSWNPCKVERRIWVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 180
Query: 619 PGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
PGVTHV+VREDP YSS WSPCWF
Sbjct: 181 PGVTHVIVREDPCYSSGAPLAMGMLAGAATGAALGSLMWSPCWF 224
>ref|NP_663491.1| pleckstrin homology domain-containing family B member 2 [Mus
musculus].
Length = 221
Score = 133 bits (334), Expect = 4e-31
Identities = 73/159 (45%), Positives = 94/159 (59%), Gaps = 7/159 (4%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY D+T Q ED+V + + +I+ G
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQSIEDKVHMPVDCINIRTGH 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
EC D+QPP+G+ RD LL + R+G + LCAE+ DD LAWK L ++ + V S
Sbjct: 61 ECRDIQPPDGKPRDCLLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAILS 120
Query: 544 YYEVV----PPNAHEATYVRSYYG-PPYAG--PGVTHVV 639
V PP A AT YG PY+G P T VV
Sbjct: 121 EETAVAASPPPYAAYATPTPEVYGYGPYSGAYPAGTQVV 159
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,100,468
Number of extensions: 1255364
Number of successful extensions: 4798
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4758
Number of HSP's successfully gapped: 11
Length of query: 442
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 338
Effective length of database: 12,493,815
Effective search space: 4222909470
Effective search space used: 4222909470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008280
(1328 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123505.1| pleckstrin homology domain-containing family... 371 e-103
Alignment gi|NP_067023.1| pleckstrin homology domain-containing family B ... 353 2e-97
Alignment gi|NP_001123508.1| pleckstrin homology domain-containing family... 345 5e-95
Alignment gi|NP_001123507.1| pleckstrin homology domain-containing family... 345 5e-95
Alignment gi|NP_001123506.1| pleckstrin homology domain-containing family... 327 1e-89
Alignment gi|NP_060428.2| pleckstrin homology domain-containing family B ... 131 1e-30
Alignment gi|NP_001094093.1| pleckstrin homology domain-containing family... 130 2e-30
>ref|NP_001123505.1| pleckstrin homology domain-containing family B member 1 isoform c
[Homo sapiens].
Length = 208
Score = 371 bits (953), Expect = e-103
Identities = 174/202 (86%), Positives = 177/202 (87%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
LIHFNVRDIKIG ECHDVQPPEGRSRDGLLTVNLREG RLHLCAET+DDALAWKTALLEA
Sbjct: 67 LIHFNVRDIKIGPECHDVQPPEGRSRDGLLTVNLREGGRLHLCAETKDDALAWKTALLEA 126
Query: 505 NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXX 684
NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHV+VREDP YS+
Sbjct: 127 NSTPVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSAGAPLAM 186
Query: 685 XXXXXXXXXXXXXXXXWSPCWF 750
WSPCWF
Sbjct: 187 GMLAGAATGAALGSLMWSPCWF 208
>ref|NP_067023.1| pleckstrin homology domain-containing family B member 1 isoform a
[Homo sapiens].
Length = 243
Score = 353 bits (907), Expect = 2e-97
Identities = 174/237 (73%), Positives = 177/237 (74%), Gaps = 35/237 (14%)
Frame = +1
Query: 145 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 324
VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV
Sbjct: 7 VPPDSALESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRV 66
Query: 325 LIHFNVRDIKIGQECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEA 504
LIHFNVRDIKIG ECHDVQPPEGRSRDGLLTVNLREG RLHLCAET+DDALAWKTALLEA
Sbjct: 67 LIHFNVRDIKIGPECHDVQPPEGRSRDGLLTVNLREGGRLHLCAETKDDALAWKTALLEA 126
Query: 505 NSTP-----------------------------------VRVYSPYQDYYEVVPPNAHEA 579
NSTP VRVYSPYQDYYEVVPPNAHEA
Sbjct: 127 NSTPAPAGATVPPRSRRVCSKVRCVTRSWSPCKVERRIWVRVYSPYQDYYEVVPPNAHEA 186
Query: 580 TYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
TYVRSYYGPPYAGPGVTHV+VREDP YS+ WSPCWF
Sbjct: 187 TYVRSYYGPPYAGPGVTHVIVREDPCYSAGAPLAMGMLAGAATGAALGSLMWSPCWF 243
>ref|NP_001123508.1| pleckstrin homology domain-containing family B member 1 isoform d
[Homo sapiens].
Length = 189
Score = 345 bits (885), Expect = 5e-95
Identities = 161/189 (85%), Positives = 164/189 (86%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIG
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGP 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
ECHDVQPPEGRSRDGLLTVNLREG RLHLCAET+DDALAWKTALLEANSTPVRVYSPYQD
Sbjct: 61 ECHDVQPPEGRSRDGLLTVNLREGGRLHLCAETKDDALAWKTALLEANSTPVRVYSPYQD 120
Query: 544 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXX 723
YYEVVPPNAHEATYVRSYYGPPYAGPGVTHV+VREDP YS+
Sbjct: 121 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSAGAPLAMGMLAGAATGAALG 180
Query: 724 XXXWSPCWF 750
WSPCWF
Sbjct: 181 SLMWSPCWF 189
>ref|NP_001123507.1| pleckstrin homology domain-containing family B member 1 isoform d
[Homo sapiens].
Length = 189
Score = 345 bits (885), Expect = 5e-95
Identities = 161/189 (85%), Positives = 164/189 (86%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIG
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGP 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQD 543
ECHDVQPPEGRSRDGLLTVNLREG RLHLCAET+DDALAWKTALLEANSTPVRVYSPYQD
Sbjct: 61 ECHDVQPPEGRSRDGLLTVNLREGGRLHLCAETKDDALAWKTALLEANSTPVRVYSPYQD 120
Query: 544 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXX 723
YYEVVPPNAHEATYVRSYYGPPYAGPGVTHV+VREDP YS+
Sbjct: 121 YYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSAGAPLAMGMLAGAATGAALG 180
Query: 724 XXXWSPCWF 750
WSPCWF
Sbjct: 181 SLMWSPCWF 189
>ref|NP_001123506.1| pleckstrin homology domain-containing family B member 1 isoform b
[Homo sapiens].
Length = 224
Score = 327 bits (839), Expect = 1e-89
Identities = 161/224 (71%), Positives = 164/224 (73%), Gaps = 35/224 (15%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIG
Sbjct: 1 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGP 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTP--------- 516
ECHDVQPPEGRSRDGLLTVNLREG RLHLCAET+DDALAWKTALLEANSTP
Sbjct: 61 ECHDVQPPEGRSRDGLLTVNLREGGRLHLCAETKDDALAWKTALLEANSTPAPAGATVPP 120
Query: 517 --------------------------VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 618
VRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG
Sbjct: 121 RSRRVCSKVRCVTRSWSPCKVERRIWVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAG 180
Query: 619 PGVTHVVVREDPYYSSXXXXXXXXXXXXXXXXXXXXXXWSPCWF 750
PGVTHV+VREDP YS+ WSPCWF
Sbjct: 181 PGVTHVIVREDPCYSAGAPLAMGMLAGAATGAALGSLMWSPCWF 224
>ref|NP_060428.2| pleckstrin homology domain-containing family B member 2 isoform 2
[Homo sapiens].
Length = 221
Score = 131 bits (330), Expect = 1e-30
Identities = 72/159 (45%), Positives = 96/159 (60%), Gaps = 7/159 (4%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY D+T Q+ ED+V + + +I+ GQ
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYSPYQ- 540
EC D QPP+G+S+D +L + R+G + LCAE+ DD LAWK L ++ + V S
Sbjct: 61 ECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAVMT 120
Query: 541 DYYEVV----PPNAHEATYVRSYYGPPYAG--PGVTHVV 639
D VV P A+ A +Y PY G P T VV
Sbjct: 121 DETSVVSSPPPYTAYAAPAPEAYGYGPYGGAYPPGTQVV 159
>ref|NP_001094093.1| pleckstrin homology domain-containing family B member 2 isoform 3
[Homo sapiens].
Length = 222
Score = 130 bits (328), Expect = 2e-30
Identities = 71/176 (40%), Positives = 96/176 (54%), Gaps = 18/176 (10%)
Frame = +1
Query: 184 MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVLIHFNVRDIKIGQ 363
MA V+ GWL RQS+IL+RWK+NWF LW DG L YY D+T Q+ ED+V + + +I+ GQ
Sbjct: 1 MAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQ 60
Query: 364 ECHDVQPPEGRSRDGLLTVNLREGTRLHLCAETRDDALAWKTALLEANSTPVRVYS---- 531
EC D QPP+G+S+D +L + R+G + LCAE+ DD LAWK L ++ + V S
Sbjct: 61 ECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSAVMT 120
Query: 532 ----------PYQDYYEVVPPNAHEATYVRSYYGP----PYAGPGVTHVVVREDPY 657
PY Y P A+ Y P YA G + V + PY
Sbjct: 121 DETSVVSSPPPYTAYAAPAPEQAYGYGPYGGAYPPGTQVVYAANGQAYAVPYQYPY 176
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,675,318
Number of extensions: 1513623
Number of successful extensions: 5771
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5746
Number of HSP's successfully gapped: 7
Length of query: 442
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 336
Effective length of database: 14,802,980
Effective search space: 4973801280
Effective search space used: 4973801280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008280
(1328 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1336 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1336 bits (674), Expect = 0.0
Identities = 706/717 (98%)
Strand = Plus / Minus
Query: 612 cgcaggtcccggcgtgacgcacgtagtggtgcgggaggatccttactacagctcgggcgc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8857892 cgcaggtcccggcgtgacgcacgtagtggtgcgggaggatccttactacagctcgggcgc 8857833
Query: 672 ccccctggccatgggcatgcttgcgggagccgccacgggcgccgctctcggctcgctcat 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8857832 ccccctggccatgggcatgcttgcgggagccgccacgggcgccgctctcggctcgctcat 8857773
Query: 732 gtggtcgccctgctggttctgagccctaggacctgcgcgtagaccaaaaagaccccttcg 791
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8857772 gtggtcgccctgctggttctgagccctaggacctgcgcgtagaccaaaacgacccctttc 8857713
Query: 792 ttcctgggtcccaacctccaccatccaagccctgtcccactttggctccttccttcctat 851
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8857712 ttcctgggccccaacctccaccatccaagccctgtcccactttggctccttccttcctat 8857653
Query: 852 tagcctcttctgggcttgttcattccttccactccccacccccaccctctcccgcacact 911
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8857652 tagcctcttctgggcttgttcattccttccactccccacccccaccctcacccgcacact 8857593
Query: 912 gtgctatcaaccaaggcacaaacctagctcaaaatctttaaatctaccgctagacacccc 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8857592 gtgctatcaaccaaggcacaaacctagctcaaaatctttaaatctaccgctagacacccc 8857533
Query: 972 agaaatccattatggacacaggtagatatgttttccgcaaacacaccagggcacagaaaa 1031
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8857532 agaaatccattatggacacaggtagatatgttttccgtaaacacaccagggcacagaaaa 8857473
Query: 1032 cacagctcatgggacttcaagttctccaggcaccgaagacacagcccctccaggtttggt 1091
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 8857472 cacagctcatgagacttcaagttctccaggcactgaagacacagcccctccaggtttggt 8857413
Query: 1092 ggagcaaacaggattaaacaaacacgttaacaagggggagtcgtgagtcttctgacagta 1151
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8857412 ggagcaaacaggattaaacaaacacgctaacaagggggagtcgtgagtcttctgacagta 8857353
Query: 1152 agagggaaggtaacaagggaggtaggtaggttaggagtacaattcttggcaagagtgcag 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8857352 agagggaaggtaacaagggaggtaggtaggttaggagtacaattcttggcaagagtgcag 8857293
Query: 1212 agccctgaacataatggcatgtccaaagaattaaaaggaagttcatttgggctggggtgt 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8857292 agccctgaacataatggcatgtccaaagaattaaaaggaagttcatttgggctggggtgt 8857233
Query: 1272 gggcagatcatgaaggctctccaagctcangaacttgctgggtaagggggagctgtg 1328
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 8857232 gggcagatcatgaaggctctgcaagctcaggaacttgctgggtaagggggagctgtg 8857176
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 221 gctccatcctccgccgctggaaacggaattggttcgccctgtggctggatgggaccctgg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8867622 gctccatcctccgccgctggaaacggaattggttcgccctgtggctggatgggaccctgg 8867563
Query: 281 gctactaccacgatgagacagcccaggacgaggaggaccgcgtgctcatccacttcaacg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8867562 gctactaccacgatgagacagcccaggacgaggaggaccgcgtgctcatccacttcaacg 8867503
Query: 341 tccgagacataaagatcggccaagagtgccacg 373
|||||||||||||||||||||||||||||||||
Sbjct: 8867502 tccgagacataaagatcggccaagagtgccacg 8867470
Score = 280 bits (141), Expect = 2e-72
Identities = 144/145 (99%)
Strand = Plus / Minus
Query: 2 ggggctgcgaggcccggggcgcagcctggggactggaatgccccaaggctctggggggca 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8870885 ggggctgcgaggcccggggcgcagcctggggactggaatgccccaaggctctggggcgca 8870826
Query: 62 caaagcgcaggcgcagcgggttgggtggcagcagcatcaagtagcggccgctttggcagc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8870825 caaagcgcaggcgcagcgggttgggtggcagcagcatcaagtagcggccgctttggcagc 8870766
Query: 122 agcatcgcagcaggtgcagacaggt 146
|||||||||||||||||||||||||
Sbjct: 8870765 agcatcgcagcaggtgcagacaggt 8870741
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 516 ggtgcgcgtctacagcccataccaggactactatgaggtggtgccccccaacgcgcatga 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8858585 ggtgcgcgtctacagcccataccaggactactatgaggtggtgccccccaacgcgcatga 8858526
Query: 576 ggccacgtatgttcgcagctactatgggccgccctacgcaggt 618
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8858525 ggccacgtatgttcgcagctactatgggccgccctacgcaggt 8858483
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 375 tgtgcagccccccgagggccggagccgagatgggctgttgactgtaaacctgcgggaggg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8866874 tgtgcagccccccgagggccggagccgagatgggctgttgactgtaaacctgcgggaggg 8866815
Query: 435 cacccgcctacacctgtgcgcagagacccgcgacgatgcctt 476
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8866814 cacccgcctacacctgtgcgcagagacccgcgacgatgcctt 8866773
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 140 gacaggttcctcctgactccgccctggagagtccttttgaagaaatggccctggtgaggg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8869564 gacaggttcctcctgactccgccctggagagtccttttgaagaaatggccctggtgaggg 8869505
Query: 200 gcggctggctgtggagacagag 221
||||||||||||||||||||||
Sbjct: 8869504 gcggctggctgtggagacagag 8869483
Score = 85.7 bits (43), Expect = 6e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 477 agcgtggaagacggcgctgctggaggcgaactccaccccggtg 519
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8865792 agcgtggaagacggcgctgctggaggcgaactccaccccggtg 8865750
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,630,321
Number of extensions: 382
Number of successful extensions: 382
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 7
Length of query: 1328
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1307
Effective length of database: 2,808,413,156
Effective search space: 3670595994892
Effective search space used: 3670595994892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)