Animal-Genome cDNA 20110601C-008281


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008281
         (910 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001092400.1| plasma cell-induced resident endoplasmic ret...   266   2e-71

>ref|NP_001092400.1| plasma cell-induced resident endoplasmic reticulum protein
           precursor [Bos taurus].
          Length = 189

 Score =  266 bits (680), Expect = 2e-71
 Identities = 128/167 (76%), Positives = 139/167 (83%)
 Frame = +3

Query: 147 DRAPLSATAPQLDDEEKYSAHMPAHLRCDACRAVVYQMQQHLTKAEAKLHTLDSEGHHRL 326
           D A L+ATAP+LDDEEK+S H+P HLRCDACRAV YQM QHLTKAEAKL  LDS G   L
Sbjct: 23  DEASLTATAPELDDEEKFSTHIPTHLRCDACRAVAYQMWQHLTKAEAKLLPLDSGGRREL 82

Query: 327 SESVYTDVLDQSCSQTWQDYGVREVDQVKRLVGPGLSKGREPSISVMITGGLWPGRLATT 506
           SESVYTDVLDQSCSQTWQ YGV EVDQVKRL+GPGLS G +PSI VMI  GLWP RL+ T
Sbjct: 83  SESVYTDVLDQSCSQTWQGYGVGEVDQVKRLMGPGLSTGAQPSIMVMIMEGLWPTRLSKT 142

Query: 507 CWHYVGEFGEDQIYEAHRQGAEALEALLCGGPRGACSEETPRPRAEL 647
           C+HY+GEFGEDQIYEAH+QG   LEALLCGGPRGACSE+ P  R EL
Sbjct: 143 CFHYLGEFGEDQIYEAHQQGRGTLEALLCGGPRGACSEKAPDTRTEL 189


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,228,136
Number of extensions: 1284452
Number of successful extensions: 6425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6401
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,306,398
Effective search space: 2875585998
Effective search space used: 2875585998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008281
         (910 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,483,818
Number of extensions: 1265374
Number of successful extensions: 6808
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6783
Number of HSP's successfully gapped: 0
Length of query: 303
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 201
Effective length of database: 15,474,232
Effective search space: 3110320632
Effective search space used: 3110320632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008281
         (910 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003124029.1| PREDICTED: plasma cell-induced resident endo...   365   e-101

>ref|XP_003124029.1| PREDICTED: plasma cell-induced resident endoplasmic reticulum
           protein-like [Sus scrofa].
          Length = 197

 Score =  365 bits (938), Expect = e-101
 Identities = 178/197 (90%), Positives = 178/197 (90%)
 Frame = +3

Query: 57  MLTEPAPRTMRXXXXXXXXXXXXXXXXXXXDRAPLSATAPQLDDEEKYSAHMPAHLRCDA 236
           MLTEPAPRTMR                   DRAPLSATAPQLDDEEKYSAHMPAHLRCDA
Sbjct: 1   MLTEPAPRTMRLSPLLLLLLGACAIPGGLGDRAPLSATAPQLDDEEKYSAHMPAHLRCDA 60

Query: 237 CRAVVYQMQQHLTKAEAKLHTLDSEGHHRLSESVYTDVLDQSCSQTWQDYGVREVDQVKR 416
           CRAVVYQMQQHLTKAEAKLHTLDSEGHHRLSESVYTDVLDQSCSQTWQDYGVREVDQVKR
Sbjct: 61  CRAVVYQMQQHLTKAEAKLHTLDSEGHHRLSESVYTDVLDQSCSQTWQDYGVREVDQVKR 120

Query: 417 LVGPGLSKGREPSISVMITGGLWPGRLATTCWHYVGEFGEDQIYEAHRQGAEALEALLCG 596
           LVGPGLSKGREPSISVMITGGLWPGRLATTCWHYVGEFGEDQIYEAHRQGAEALEALLCG
Sbjct: 121 LVGPGLSKGREPSISVMITGGLWPGRLATTCWHYVGEFGEDQIYEAHRQGAEALEALLCG 180

Query: 597 GPRGACSEETPRPRAEL 647
           GPRGACSEETPRPRAEL
Sbjct: 181 GPRGACSEETPRPRAEL 197


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,624,187
Number of extensions: 913420
Number of successful extensions: 4266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4230
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,904,026
Effective search space: 1825325330
Effective search space used: 1825325330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008281
         (910 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081498.2| plasma cell-induced resident endoplasmic reticu...   251   7e-67

>ref|NP_081498.2| plasma cell-induced resident endoplasmic reticulum protein
           precursor [Mus musculus].
          Length = 188

 Score =  251 bits (640), Expect = 7e-67
 Identities = 121/167 (72%), Positives = 133/167 (79%)
 Frame = +3

Query: 147 DRAPLSATAPQLDDEEKYSAHMPAHLRCDACRAVVYQMQQHLTKAEAKLHTLDSEGHHRL 326
           DR  LSA+AP LDDEEKYSAHMPAHLRCDACRAV +QM Q L KAEAK HT D+ G   L
Sbjct: 22  DRVSLSASAPTLDDEEKYSAHMPAHLRCDACRAVAFQMGQRLAKAEAKSHTPDASGLQEL 81

Query: 327 SESVYTDVLDQSCSQTWQDYGVREVDQVKRLVGPGLSKGREPSISVMITGGLWPGRLATT 506
           SES YTDVLDQ+CSQ WQ YGV EV+Q+KRL GPGLSKG EP ISVMI+GG WP RL+ T
Sbjct: 82  SESTYTDVLDQTCSQNWQSYGVHEVNQMKRLTGPGLSKGPEPRISVMISGGPWPNRLSKT 141

Query: 507 CWHYVGEFGEDQIYEAHRQGAEALEALLCGGPRGACSEETPRPRAEL 647
           C+HY+GEFGEDQIYEA+RQG   LEALLCGG  G CS+E    R EL
Sbjct: 142 CFHYLGEFGEDQIYEAYRQGQANLEALLCGGTHGPCSQEILAQREEL 188


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,201,381
Number of extensions: 983995
Number of successful extensions: 4612
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4594
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 202
Effective length of database: 12,583,923
Effective search space: 2541952446
Effective search space used: 2541952446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008281
         (910 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_057543.2| plasma cell-induced resident endoplasmic reticu...   271   5e-73

>ref|NP_057543.2| plasma cell-induced resident endoplasmic reticulum protein
           precursor [Homo sapiens].
          Length = 189

 Score =  271 bits (694), Expect = 5e-73
 Identities = 130/167 (77%), Positives = 142/167 (85%)
 Frame = +3

Query: 147 DRAPLSATAPQLDDEEKYSAHMPAHLRCDACRAVVYQMQQHLTKAEAKLHTLDSEGHHRL 326
           DRAPL+ATAPQLDDEE YSAHMPAHLRCDACRAV YQM Q+L KAE KLHT +S G   L
Sbjct: 23  DRAPLTATAPQLDDEEMYSAHMPAHLRCDACRAVAYQMWQNLAKAETKLHTSNSGGRREL 82

Query: 327 SESVYTDVLDQSCSQTWQDYGVREVDQVKRLVGPGLSKGREPSISVMITGGLWPGRLATT 506
           SE VYTDVLD+SCS+ WQDYGVREVDQVKRL GPGLS+G EPSISVM+TGG WP RL+ T
Sbjct: 83  SELVYTDVLDRSCSRNWQDYGVREVDQVKRLTGPGLSEGPEPSISVMVTGGPWPTRLSRT 142

Query: 507 CWHYVGEFGEDQIYEAHRQGAEALEALLCGGPRGACSEETPRPRAEL 647
           C HY+GEFGEDQIYEAH+QG  ALEALLCGGP+GACSE+    R EL
Sbjct: 143 CLHYLGEFGEDQIYEAHQQGRGALEALLCGGPQGACSEKVSATREEL 189


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,418,991
Number of extensions: 1208685
Number of successful extensions: 5955
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5933
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,934,836
Effective search space: 3001902036
Effective search space used: 3001902036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008281
         (910 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         708   0.0  

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  708 bits (357), Expect = 0.0
 Identities = 357/357 (100%)
 Strand = Plus / Minus

                                                                             
Query: 492       aggctcgccacgacctgctggcactacgtgggggagtttggagaagaccagatctatgaa 551
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108506 aggctcgccacgacctgctggcactacgtgggggagtttggagaagaccagatctatgaa 147108447

                                                                             
Query: 552       gcccaccgacaaggtgcggaggctctggaggcgttgctgtgtgggggcccccgaggggcc 611
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108446 gcccaccgacaaggtgcggaggctctggaggcgttgctgtgtgggggcccccgaggggcc 147108387

                                                                             
Query: 612       tgctccgaggagaccccccgcccacgggcagagctctagacccgctcctcctgtccttcc 671
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108386 tgctccgaggagaccccccgcccacgggcagagctctagacccgctcctcctgtccttcc 147108327

                                                                             
Query: 672       tggtcggccccgaggagcgccgggcttcctccggacctgcccccctacgttctgcaagct 731
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108326 tggtcggccccgaggagcgccgggcttcctccggacctgcccccctacgttctgcaagct 147108267

                                                                             
Query: 732       gcctggaaggctgtcgtctgtgctgacactctctgtccccacgcccgcttgggggccctg 791
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108266 gcctggaaggctgtcgtctgtgctgacactctctgtccccacgcccgcttgggggccctg 147108207

                                                                          
Query: 792       gggcccgggtgggggccaaggtctgccccctggactcaaataaaacctggtgacctc 848
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108206 gggcccgggtgggggccaaggtctgccccctggactcaaataaaacctggtgacctc 147108150



 Score =  507 bits (256), Expect = e-141
 Identities = 256/256 (100%)
 Strand = Plus / Minus

                                                                             
Query: 2         attggtctggggcggcccccactgcgcacacgcacctgcaccccaaccccagcacatgct 61
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147110268 attggtctggggcggcccccactgcgcacacgcacctgcaccccaaccccagcacatgct 147110209

                                                                             
Query: 62        cactgagccggctccacggaccatgaggctgtcaccgctgctgctactgctgctgggggc 121
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147110208 cactgagccggctccacggaccatgaggctgtcaccgctgctgctactgctgctgggggc 147110149

                                                                             
Query: 122       ctgtgccatcccagggggccttggggacagggccccactctcagccactgccccccagct 181
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147110148 ctgtgccatcccagggggccttggggacagggccccactctcagccactgccccccagct 147110089

                                                                             
Query: 182       ggatgacgaggagaagtactcagctcacatgccggctcacctgcgctgtgatgcctgcag 241
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147110088 ggatgacgaggagaagtactcagctcacatgccggctcacctgcgctgtgatgcctgcag 147110029

                                 
Query: 242       ggccgtggtctaccag 257
                 ||||||||||||||||
Sbjct: 147110028 ggccgtggtctaccag 147110013



 Score =  256 bits (129), Expect = 2e-65
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                             
Query: 254       ccagatgcagcaacatctgacaaaggcagaggccaagcttcacaccctggactccgaggg 313
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147109256 ccagatgcagcaacatctgacaaaggcagaggccaagcttcacaccctggactccgaggg 147109197

                                                                             
Query: 314       ccatcacaggctgagtgagtccgtatacacagatgttctggatcagagctgttcccagac 373
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147109196 ccatcacaggctgagtgagtccgtatacacagatgttctggatcagagctgttcccagac 147109137

                          
Query: 374       ctggcagga 382
                 |||||||||
Sbjct: 147109136 ctggcagga 147109128



 Score =  222 bits (112), Expect = 3e-55
 Identities = 112/112 (100%)
 Strand = Plus / Minus

                                                                             
Query: 383       ctacggcgttcgagaagtggaccaggtgaaacgactcgtaggcccaggacttagcaaggg 442
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108714 ctacggcgttcgagaagtggaccaggtgaaacgactcgtaggcccaggacttagcaaggg 147108655

                                                                     
Query: 443       gcgggagccgagcatcagcgtgatgatcacggggggcctgtggcccggcagg 494
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108654 gcgggagccgagcatcagcgtgatgatcacggggggcctgtggcccggcagg 147108603


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,567,734
Number of extensions: 249
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 4
Length of query: 910
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 889
Effective length of database: 2,808,413,156
Effective search space: 2496679295684
Effective search space used: 2496679295684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)