Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008281
(910 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092400.1| plasma cell-induced resident endoplasmic ret... 266 2e-71
>ref|NP_001092400.1| plasma cell-induced resident endoplasmic reticulum protein
precursor [Bos taurus].
Length = 189
Score = 266 bits (680), Expect = 2e-71
Identities = 128/167 (76%), Positives = 139/167 (83%)
Frame = +3
Query: 147 DRAPLSATAPQLDDEEKYSAHMPAHLRCDACRAVVYQMQQHLTKAEAKLHTLDSEGHHRL 326
D A L+ATAP+LDDEEK+S H+P HLRCDACRAV YQM QHLTKAEAKL LDS G L
Sbjct: 23 DEASLTATAPELDDEEKFSTHIPTHLRCDACRAVAYQMWQHLTKAEAKLLPLDSGGRREL 82
Query: 327 SESVYTDVLDQSCSQTWQDYGVREVDQVKRLVGPGLSKGREPSISVMITGGLWPGRLATT 506
SESVYTDVLDQSCSQTWQ YGV EVDQVKRL+GPGLS G +PSI VMI GLWP RL+ T
Sbjct: 83 SESVYTDVLDQSCSQTWQGYGVGEVDQVKRLMGPGLSTGAQPSIMVMIMEGLWPTRLSKT 142
Query: 507 CWHYVGEFGEDQIYEAHRQGAEALEALLCGGPRGACSEETPRPRAEL 647
C+HY+GEFGEDQIYEAH+QG LEALLCGGPRGACSE+ P R EL
Sbjct: 143 CFHYLGEFGEDQIYEAHQQGRGTLEALLCGGPRGACSEKAPDTRTEL 189
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,228,136
Number of extensions: 1284452
Number of successful extensions: 6425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6401
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,306,398
Effective search space: 2875585998
Effective search space used: 2875585998
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008281
(910 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,483,818
Number of extensions: 1265374
Number of successful extensions: 6808
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 6783
Number of HSP's successfully gapped: 0
Length of query: 303
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 201
Effective length of database: 15,474,232
Effective search space: 3110320632
Effective search space used: 3110320632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008281
(910 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124029.1| PREDICTED: plasma cell-induced resident endo... 365 e-101
>ref|XP_003124029.1| PREDICTED: plasma cell-induced resident endoplasmic reticulum
protein-like [Sus scrofa].
Length = 197
Score = 365 bits (938), Expect = e-101
Identities = 178/197 (90%), Positives = 178/197 (90%)
Frame = +3
Query: 57 MLTEPAPRTMRXXXXXXXXXXXXXXXXXXXDRAPLSATAPQLDDEEKYSAHMPAHLRCDA 236
MLTEPAPRTMR DRAPLSATAPQLDDEEKYSAHMPAHLRCDA
Sbjct: 1 MLTEPAPRTMRLSPLLLLLLGACAIPGGLGDRAPLSATAPQLDDEEKYSAHMPAHLRCDA 60
Query: 237 CRAVVYQMQQHLTKAEAKLHTLDSEGHHRLSESVYTDVLDQSCSQTWQDYGVREVDQVKR 416
CRAVVYQMQQHLTKAEAKLHTLDSEGHHRLSESVYTDVLDQSCSQTWQDYGVREVDQVKR
Sbjct: 61 CRAVVYQMQQHLTKAEAKLHTLDSEGHHRLSESVYTDVLDQSCSQTWQDYGVREVDQVKR 120
Query: 417 LVGPGLSKGREPSISVMITGGLWPGRLATTCWHYVGEFGEDQIYEAHRQGAEALEALLCG 596
LVGPGLSKGREPSISVMITGGLWPGRLATTCWHYVGEFGEDQIYEAHRQGAEALEALLCG
Sbjct: 121 LVGPGLSKGREPSISVMITGGLWPGRLATTCWHYVGEFGEDQIYEAHRQGAEALEALLCG 180
Query: 597 GPRGACSEETPRPRAEL 647
GPRGACSEETPRPRAEL
Sbjct: 181 GPRGACSEETPRPRAEL 197
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,624,187
Number of extensions: 913420
Number of successful extensions: 4266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4230
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,904,026
Effective search space: 1825325330
Effective search space used: 1825325330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008281
(910 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081498.2| plasma cell-induced resident endoplasmic reticu... 251 7e-67
>ref|NP_081498.2| plasma cell-induced resident endoplasmic reticulum protein
precursor [Mus musculus].
Length = 188
Score = 251 bits (640), Expect = 7e-67
Identities = 121/167 (72%), Positives = 133/167 (79%)
Frame = +3
Query: 147 DRAPLSATAPQLDDEEKYSAHMPAHLRCDACRAVVYQMQQHLTKAEAKLHTLDSEGHHRL 326
DR LSA+AP LDDEEKYSAHMPAHLRCDACRAV +QM Q L KAEAK HT D+ G L
Sbjct: 22 DRVSLSASAPTLDDEEKYSAHMPAHLRCDACRAVAFQMGQRLAKAEAKSHTPDASGLQEL 81
Query: 327 SESVYTDVLDQSCSQTWQDYGVREVDQVKRLVGPGLSKGREPSISVMITGGLWPGRLATT 506
SES YTDVLDQ+CSQ WQ YGV EV+Q+KRL GPGLSKG EP ISVMI+GG WP RL+ T
Sbjct: 82 SESTYTDVLDQTCSQNWQSYGVHEVNQMKRLTGPGLSKGPEPRISVMISGGPWPNRLSKT 141
Query: 507 CWHYVGEFGEDQIYEAHRQGAEALEALLCGGPRGACSEETPRPRAEL 647
C+HY+GEFGEDQIYEA+RQG LEALLCGG G CS+E R EL
Sbjct: 142 CFHYLGEFGEDQIYEAYRQGQANLEALLCGGTHGPCSQEILAQREEL 188
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,201,381
Number of extensions: 983995
Number of successful extensions: 4612
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4594
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 202
Effective length of database: 12,583,923
Effective search space: 2541952446
Effective search space used: 2541952446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008281
(910 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057543.2| plasma cell-induced resident endoplasmic reticu... 271 5e-73
>ref|NP_057543.2| plasma cell-induced resident endoplasmic reticulum protein
precursor [Homo sapiens].
Length = 189
Score = 271 bits (694), Expect = 5e-73
Identities = 130/167 (77%), Positives = 142/167 (85%)
Frame = +3
Query: 147 DRAPLSATAPQLDDEEKYSAHMPAHLRCDACRAVVYQMQQHLTKAEAKLHTLDSEGHHRL 326
DRAPL+ATAPQLDDEE YSAHMPAHLRCDACRAV YQM Q+L KAE KLHT +S G L
Sbjct: 23 DRAPLTATAPQLDDEEMYSAHMPAHLRCDACRAVAYQMWQNLAKAETKLHTSNSGGRREL 82
Query: 327 SESVYTDVLDQSCSQTWQDYGVREVDQVKRLVGPGLSKGREPSISVMITGGLWPGRLATT 506
SE VYTDVLD+SCS+ WQDYGVREVDQVKRL GPGLS+G EPSISVM+TGG WP RL+ T
Sbjct: 83 SELVYTDVLDRSCSRNWQDYGVREVDQVKRLTGPGLSEGPEPSISVMVTGGPWPTRLSRT 142
Query: 507 CWHYVGEFGEDQIYEAHRQGAEALEALLCGGPRGACSEETPRPRAEL 647
C HY+GEFGEDQIYEAH+QG ALEALLCGGP+GACSE+ R EL
Sbjct: 143 CLHYLGEFGEDQIYEAHQQGRGALEALLCGGPQGACSEKVSATREEL 189
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,418,991
Number of extensions: 1208685
Number of successful extensions: 5955
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5933
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,934,836
Effective search space: 3001902036
Effective search space used: 3001902036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008281
(910 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 708 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 708 bits (357), Expect = 0.0
Identities = 357/357 (100%)
Strand = Plus / Minus
Query: 492 aggctcgccacgacctgctggcactacgtgggggagtttggagaagaccagatctatgaa 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108506 aggctcgccacgacctgctggcactacgtgggggagtttggagaagaccagatctatgaa 147108447
Query: 552 gcccaccgacaaggtgcggaggctctggaggcgttgctgtgtgggggcccccgaggggcc 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108446 gcccaccgacaaggtgcggaggctctggaggcgttgctgtgtgggggcccccgaggggcc 147108387
Query: 612 tgctccgaggagaccccccgcccacgggcagagctctagacccgctcctcctgtccttcc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108386 tgctccgaggagaccccccgcccacgggcagagctctagacccgctcctcctgtccttcc 147108327
Query: 672 tggtcggccccgaggagcgccgggcttcctccggacctgcccccctacgttctgcaagct 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108326 tggtcggccccgaggagcgccgggcttcctccggacctgcccccctacgttctgcaagct 147108267
Query: 732 gcctggaaggctgtcgtctgtgctgacactctctgtccccacgcccgcttgggggccctg 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108266 gcctggaaggctgtcgtctgtgctgacactctctgtccccacgcccgcttgggggccctg 147108207
Query: 792 gggcccgggtgggggccaaggtctgccccctggactcaaataaaacctggtgacctc 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108206 gggcccgggtgggggccaaggtctgccccctggactcaaataaaacctggtgacctc 147108150
Score = 507 bits (256), Expect = e-141
Identities = 256/256 (100%)
Strand = Plus / Minus
Query: 2 attggtctggggcggcccccactgcgcacacgcacctgcaccccaaccccagcacatgct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147110268 attggtctggggcggcccccactgcgcacacgcacctgcaccccaaccccagcacatgct 147110209
Query: 62 cactgagccggctccacggaccatgaggctgtcaccgctgctgctactgctgctgggggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147110208 cactgagccggctccacggaccatgaggctgtcaccgctgctgctactgctgctgggggc 147110149
Query: 122 ctgtgccatcccagggggccttggggacagggccccactctcagccactgccccccagct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147110148 ctgtgccatcccagggggccttggggacagggccccactctcagccactgccccccagct 147110089
Query: 182 ggatgacgaggagaagtactcagctcacatgccggctcacctgcgctgtgatgcctgcag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147110088 ggatgacgaggagaagtactcagctcacatgccggctcacctgcgctgtgatgcctgcag 147110029
Query: 242 ggccgtggtctaccag 257
||||||||||||||||
Sbjct: 147110028 ggccgtggtctaccag 147110013
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 254 ccagatgcagcaacatctgacaaaggcagaggccaagcttcacaccctggactccgaggg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147109256 ccagatgcagcaacatctgacaaaggcagaggccaagcttcacaccctggactccgaggg 147109197
Query: 314 ccatcacaggctgagtgagtccgtatacacagatgttctggatcagagctgttcccagac 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147109196 ccatcacaggctgagtgagtccgtatacacagatgttctggatcagagctgttcccagac 147109137
Query: 374 ctggcagga 382
|||||||||
Sbjct: 147109136 ctggcagga 147109128
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 383 ctacggcgttcgagaagtggaccaggtgaaacgactcgtaggcccaggacttagcaaggg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108714 ctacggcgttcgagaagtggaccaggtgaaacgactcgtaggcccaggacttagcaaggg 147108655
Query: 443 gcgggagccgagcatcagcgtgatgatcacggggggcctgtggcccggcagg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147108654 gcgggagccgagcatcagcgtgatgatcacggggggcctgtggcccggcagg 147108603
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,567,734
Number of extensions: 249
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 4
Length of query: 910
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 889
Effective length of database: 2,808,413,156
Effective search space: 2496679295684
Effective search space used: 2496679295684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)