Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008282
(1141 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002686279.1| PREDICTED: transforming growth factor, beta ... 218 6e-57
Alignment gi|XP_001253072.1| PREDICTED: transforming growth factor, beta ... 218 6e-57
Alignment gi|NP_001069865.1| endoglin [Bos taurus]. 65 9e-11
>ref|XP_002686279.1| PREDICTED: transforming growth factor, beta receptor III [Bos
taurus].
Length = 858
Score = 218 bits (556), Expect = 6e-57
Identities = 105/117 (89%), Positives = 111/117 (94%)
Frame = +1
Query: 202 QCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFKETGPSTKESNPISPPIFHG 381
+CVLPDEACTSLDASMIWAMMQNKKTFT+PLAVIHHEV FKETGPS KE PI+P IFHG
Sbjct: 729 KCVLPDEACTSLDASMIWAMMQNKKTFTRPLAVIHHEVPFKETGPSIKEPIPITPQIFHG 788
Query: 382 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 552
LDTLTVMGIAFAAFVIGALLTGALWYIYSHTG++AGRQ VPTSPPASENSSAAHS+G
Sbjct: 789 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIG 845
>ref|XP_001253072.1| PREDICTED: transforming growth factor, beta receptor III [Bos
taurus].
Length = 858
Score = 218 bits (556), Expect = 6e-57
Identities = 105/117 (89%), Positives = 111/117 (94%)
Frame = +1
Query: 202 QCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFKETGPSTKESNPISPPIFHG 381
+CVLPDEACTSLDASMIWAMMQNKKTFT+PLAVIHHEV FKETGPS KE PI+P IFHG
Sbjct: 729 KCVLPDEACTSLDASMIWAMMQNKKTFTRPLAVIHHEVPFKETGPSIKEPIPITPQIFHG 788
Query: 382 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 552
LDTLTVMGIAFAAFVIGALLTGALWYIYSHTG++AGRQ VPTSPPASENSSAAHS+G
Sbjct: 789 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIG 845
>ref|NP_001069865.1| endoglin [Bos taurus].
Length = 647
Score = 65.5 bits (158), Expect = 9e-11
Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Frame = +1
Query: 379 GLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPV--PTSPPASENSSAAHSLG 552
GL V+GI F AF+IGALLT ALWYIYSHT R+PV +P +SE+SS HS+G
Sbjct: 575 GLVLPAVLGITFGAFLIGALLTAALWYIYSHTRHPGKREPVVAVAAPASSESSSTNHSIG 634
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,079,566
Number of extensions: 1512415
Number of successful extensions: 6819
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6784
Number of HSP's successfully gapped: 3
Length of query: 380
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,240,222
Effective search space: 3930301272
Effective search space used: 3930301272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008282
(1141 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547284.2| PREDICTED: similar to TGF-beta receptor type II... 208 9e-54
Alignment gi|XP_851469.1| PREDICTED: similar to Endoglin precursor (CD105... 66 7e-11
>ref|XP_547284.2| PREDICTED: similar to TGF-beta receptor type III precursor (TGFR-3)
(Transforming growth factor beta receptor III)
(Betaglycan) [Canis familiaris].
Length = 928
Score = 208 bits (529), Expect = 9e-54
Identities = 102/117 (87%), Positives = 108/117 (92%)
Frame = +1
Query: 202 QCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFKETGPSTKESNPISPPIFHG 381
+CV PDEACTSLDASMIWAMMQNKKTFTKPLAVIH E + K GPS KE NPISPP+FHG
Sbjct: 801 KCVPPDEACTSLDASMIWAMMQNKKTFTKPLAVIHQEAEGK--GPSFKEPNPISPPVFHG 858
Query: 382 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 552
LDTLTVMGIAFAAFVIGALLTGALWYIYSHTG++AGRQ VPTSPPASENSSAAHS+G
Sbjct: 859 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIG 915
>ref|XP_851469.1| PREDICTED: similar to Endoglin precursor (CD105 antigen) [Canis
familiaris].
Length = 721
Score = 65.9 bits (159), Expect = 7e-11
Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Frame = +1
Query: 352 NPISPPI-FHGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPV--PTSPPAS 522
N +SP + GL V+GI F AF+IGALLT ALWYIYSHT R+PV +P +S
Sbjct: 639 NIVSPGLPDKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTRPPGKREPVVAVAAPASS 698
Query: 523 ENSSAAHSLG 552
E+SS HS+G
Sbjct: 699 ESSSTNHSIG 708
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,936,818
Number of extensions: 1545714
Number of successful extensions: 6790
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6752
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 276
Effective length of database: 15,407,560
Effective search space: 4252486560
Effective search space used: 4252486560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008282
(1141 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999437.1| transforming growth factor beta receptor type 3... 231 4e-61
Alignment gi|NP_999196.1| endoglin precursor [Sus scrofa]. 64 2e-10
>ref|NP_999437.1| transforming growth factor beta receptor type 3 precursor [Sus
scrofa].
Length = 848
Score = 231 bits (590), Expect = 4e-61
Identities = 114/117 (97%), Positives = 115/117 (98%)
Frame = +1
Query: 202 QCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFKETGPSTKESNPISPPIFHG 381
+CVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFK GPSTKESNPISPPIFHG
Sbjct: 721 KCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFK--GPSTKESNPISPPIFHG 778
Query: 382 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 552
LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG
Sbjct: 779 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 835
>ref|NP_999196.1| endoglin precursor [Sus scrofa].
Length = 653
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Frame = +1
Query: 352 NPISPPI-FHGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPV--PTSPPAS 522
N +SP + GL V+GI F AF+IGALLT ALWYI+SHT R+PV +P +S
Sbjct: 571 NIVSPGLPDKGLVLPAVLGITFGAFLIGALLTAALWYIHSHTRHPGKREPVVAVAAPASS 630
Query: 523 ENSSAAHSLG 552
E+SS HS+G
Sbjct: 631 ESSSTNHSIG 640
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,692,072
Number of extensions: 977653
Number of successful extensions: 4380
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4366
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 279
Effective length of database: 8,829,335
Effective search space: 2463384465
Effective search space used: 2463384465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008282
(1141 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035708.2| transforming growth factor beta receptor type 3... 190 2e-48
Alignment gi|NP_001139820.1| endoglin isoform 3 [Mus musculus]. 67 2e-11
Alignment gi|NP_031958.2| endoglin isoform 1 [Mus musculus]. 67 2e-11
Alignment gi|NP_001139822.1| endoglin isoform 2 [Mus musculus]. 54 3e-07
>ref|NP_035708.2| transforming growth factor beta receptor type 3 precursor [Mus
musculus].
Length = 850
Score = 190 bits (483), Expect = 2e-48
Identities = 94/119 (78%), Positives = 106/119 (89%), Gaps = 2/119 (1%)
Frame = +1
Query: 202 QCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFKETGPSTKESNPISPP--IF 375
+CV PD+ACTSLDA+MIW MMQNKKTFTKPLAV+ +V +KE P+ KES+P+ PP IF
Sbjct: 720 KCVTPDDACTSLDATMIWTMMQNKKTFTKPLAVVL-QVDYKENVPNMKESSPVPPPPQIF 778
Query: 376 HGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 552
HGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTG++A RQ VPTSPPASENSSAAHS+G
Sbjct: 779 HGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGETARRQQVPTSPPASENSSAAHSIG 837
>ref|NP_001139820.1| endoglin isoform 3 [Mus musculus].
Length = 652
Score = 67.4 bits (163), Expect = 2e-11
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Frame = +1
Query: 352 NPISPPIF-HGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPV--PTSPPAS 522
N +SP + GL +V+GI F AF+IGALLT ALWYIYSHT + R+PV +P +S
Sbjct: 570 NIVSPDLSGKGLVLPSVLGITFGAFLIGALLTAALWYIYSHTRGPSKREPVVAVAAPASS 629
Query: 523 ENSSAAHSLG 552
E+SS HS+G
Sbjct: 630 ESSSTNHSIG 639
>ref|NP_031958.2| endoglin isoform 1 [Mus musculus].
Length = 653
Score = 67.4 bits (163), Expect = 2e-11
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Frame = +1
Query: 352 NPISPPIF-HGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPV--PTSPPAS 522
N +SP + GL +V+GI F AF+IGALLT ALWYIYSHT + R+PV +P +S
Sbjct: 571 NIVSPDLSGKGLVLPSVLGITFGAFLIGALLTAALWYIYSHTRGPSKREPVVAVAAPASS 630
Query: 523 ENSSAAHSLG 552
E+SS HS+G
Sbjct: 631 ESSSTNHSIG 640
>ref|NP_001139822.1| endoglin isoform 2 [Mus musculus].
Length = 641
Score = 53.5 bits (127), Expect = 3e-07
Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 352 NPISPPIF-HGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASEN 528
N +SP + GL +V+GI F AF+IGALLT ALWYIYSHT + P P S+
Sbjct: 571 NIVSPDLSGKGLVLPSVLGITFGAFLIGALLTAALWYIYSHTRE----YPKPPPHSHSKR 626
Query: 529 SSAAHS 546
S H+
Sbjct: 627 SGPVHT 632
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,102,014
Number of extensions: 1259173
Number of successful extensions: 5631
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5612
Number of HSP's successfully gapped: 4
Length of query: 380
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 277
Effective length of database: 12,523,851
Effective search space: 3469106727
Effective search space used: 3469106727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008282
(1141 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182612.1| transforming growth factor beta receptor typ... 217 1e-56
Alignment gi|NP_003234.2| transforming growth factor beta receptor type 3... 217 1e-56
Alignment gi|NP_001182613.1| transforming growth factor beta receptor typ... 217 1e-56
Alignment gi|NP_001108225.1| endoglin isoform 1 precursor [Homo sapiens]. 67 4e-11
Alignment gi|NP_000109.1| endoglin isoform 2 precursor [Homo sapiens]. 50 4e-06
>ref|NP_001182612.1| transforming growth factor beta receptor type 3 isoform b [Homo
sapiens].
Length = 850
Score = 217 bits (553), Expect = 1e-56
Identities = 104/117 (88%), Positives = 110/117 (94%)
Frame = +1
Query: 202 QCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFKETGPSTKESNPISPPIFHG 381
+CV PDEACTSLDAS+IWAMMQNKKTFTKPLAVIHHE + KE GPS KE NPISPPIFHG
Sbjct: 721 KCVPPDEACTSLDASIIWAMMQNKKTFTKPLAVIHHEAESKEKGPSMKEPNPISPPIFHG 780
Query: 382 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 552
LDTLTVMGIAFAAFVIGALLTGALWYIYSHTG++AGRQ VPTSPPASENSSAAHS+G
Sbjct: 781 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIG 837
>ref|NP_003234.2| transforming growth factor beta receptor type 3 isoform a [Homo
sapiens].
Length = 851
Score = 217 bits (553), Expect = 1e-56
Identities = 104/117 (88%), Positives = 110/117 (94%)
Frame = +1
Query: 202 QCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFKETGPSTKESNPISPPIFHG 381
+CV PDEACTSLDAS+IWAMMQNKKTFTKPLAVIHHE + KE GPS KE NPISPPIFHG
Sbjct: 722 KCVPPDEACTSLDASIIWAMMQNKKTFTKPLAVIHHEAESKEKGPSMKEPNPISPPIFHG 781
Query: 382 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 552
LDTLTVMGIAFAAFVIGALLTGALWYIYSHTG++AGRQ VPTSPPASENSSAAHS+G
Sbjct: 782 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIG 838
>ref|NP_001182613.1| transforming growth factor beta receptor type 3 isoform b [Homo
sapiens].
Length = 850
Score = 217 bits (553), Expect = 1e-56
Identities = 104/117 (88%), Positives = 110/117 (94%)
Frame = +1
Query: 202 QCVLPDEACTSLDASMIWAMMQNKKTFTKPLAVIHHEVQFKETGPSTKESNPISPPIFHG 381
+CV PDEACTSLDAS+IWAMMQNKKTFTKPLAVIHHE + KE GPS KE NPISPPIFHG
Sbjct: 721 KCVPPDEACTSLDASIIWAMMQNKKTFTKPLAVIHHEAESKEKGPSMKEPNPISPPIFHG 780
Query: 382 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPVPTSPPASENSSAAHSLG 552
LDTLTVMGIAFAAFVIGALLTGALWYIYSHTG++AGRQ VPTSPPASENSSAAHS+G
Sbjct: 781 LDTLTVMGIAFAAFVIGALLTGALWYIYSHTGETAGRQQVPTSPPASENSSAAHSIG 837
>ref|NP_001108225.1| endoglin isoform 1 precursor [Homo sapiens].
Length = 658
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Frame = +1
Query: 352 NPISPPIF----HGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGDSAGRQPV--PTSP 513
N ISP + GL V+GI F AF+IGALLT ALWYIYSHT + R+PV +P
Sbjct: 573 NIISPDLSGCTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTRSPSKREPVVAVAAP 632
Query: 514 PASENSSAAHSLG 552
+SE+SS HS+G
Sbjct: 633 ASSESSSTNHSIG 645
>ref|NP_000109.1| endoglin isoform 2 precursor [Homo sapiens].
Length = 625
Score = 50.1 bits (118), Expect = 4e-06
Identities = 27/45 (60%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Frame = +1
Query: 352 NPISPPIF----HGLDTLTVMGIAFAAFVIGALLTGALWYIYSHT 474
N ISP + GL V+GI F AF+IGALLT ALWYIYSHT
Sbjct: 573 NIISPDLSGCTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHT 617
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,926,209
Number of extensions: 1515753
Number of successful extensions: 6513
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6478
Number of HSP's successfully gapped: 5
Length of query: 380
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,868,908
Effective search space: 4103818608
Effective search space used: 4103818608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008282
(1141 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1128 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1128 bits (569), Expect = 0.0
Identities = 651/672 (96%), Gaps = 5/672 (0%)
Strand = Plus / Plus
Query: 473 caggagacagcgcaggaaggcagcccgtgcccacctcgccgccagcctcggagaacagca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136890533 caggagacagcgcaggaaggcagcccgtgcccacctcgccgccagcctcggagaacagca 136890592
Query: 533 gcgcggcgcacagcctgggcagcacgcagagcaccccctgctccagcagcagcgccgcct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136890593 gcgcggcgcacagcctgggcagcacgcagagcaccccctgctccagcagcagcgccgcct 136890652
Query: 593 agcccgccgcccggatgcccgcgcgtccccgtcgagagccaacggcagtggaacgggcac 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136890653 agcccgccgcccggatgcccgcgcgtccccgtcgagagccaacggcagtggaacgggcac 136890712
Query: 653 ctgctgtgctcacccccctcccagggcgaggctaactacgaccccgggcttctgtaacac 712
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 136890713 ctgctgtgctcacccccctcccagggcgaggctaaccacgaccccgggcttctgtaacac 136890772
Query: 713 cctagatccatacgagaaagctaaggtggtgggtttctccaccagcccctcacaggcctg 772
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136890773 cctagattcatatgagaaagctaaggtggtgggtttctccaccagcccctcacaggcctg 136890832
Query: 773 gggctttcaatgtgaaacgcatgccagttcttaaaatgctgctttgtccaggtaagaaca 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136890833 gggctttcaatgtgaaacgcatgccagttcttaaaatgctgctttgtccaggtaagaaca 136890892
Query: 833 tccataagctggggccctgcgtttgactcggatgcaaggagctggtaaaagtgtaacagc 892
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 136890893 tccataagctggggccctgcgtttgactcggacgcaaggagctggtaaaagtgtaacagc 136890952
Query: 893 caggtcgtaaaaccagggaggggaagtggcccaacactctcttataacaaacggaa-caa 951
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 136890953 caggtcgtagaaccagggaggggaagtggcccaacactctcttataaccaacggaaccaa 136891012
Query: 952 ggcgt-aaacgaaagaagcgtggcaagactttcccgcgtgtgt-cctccccggctccttt 1009
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 136891013 ggcgtaaaacgaaagaagcgtggcaagacttt-ccgcgtgtgtccctccccggctccttt 136891071
Query: 1010 gcnacttctggatgcacacgtcccaacttgctggtacaccggttggggacccgtgtgttc 1069
|| ||||||||||||||| ||||| |||||||| ||| ||| |||||||||||||||
Sbjct: 136891072 gcaccttctggatgcacacatcccaccttgctggcaca-cgggtggggacccgtgtgtcg 136891130
Query: 1070 gctcgatggctgcagccctggcgggctgcatcctgaaccacagccaggtgacattccttt 1129
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 136891131 gctcgatggctgcagccctggcgggctgcatcctgacacacagccaggtgacattccttt 136891190
Query: 1130 cgtgcgccctgg 1141
||||||||||||
Sbjct: 136891191 cgtgcgccctgg 136891202
Score = 644 bits (325), Expect = 0.0
Identities = 325/325 (100%)
Strand = Plus / Plus
Query: 1 gtccagcaatatttgcatctttaagcgcagctgagaacacactggggctgctcccatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136820005 gtccagcaatatttgcatctttaagcgcagctgagaacacactggggctgctcccatctc 136820064
Query: 61 cctggttgtttgtggttctttcaaagccaccccaatctcctgttttgctgggtaaaccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136820065 cctggttgtttgtggttctttcaaagccaccccaatctcctgttttgctgggtaaaccgc 136820124
Query: 121 tgtgggcggtccgctcaagggccgcggggcacccgggacgctgtgggccttctgggtgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136820125 tgtgggcggtccgctcaagggccgcggggcacccgggacgctgtgggccttctgggtgac 136820184
Query: 181 ctgctctgctcggcttctctgcagtgcgtgctgcccgatgaagcctgcacctcgctggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136820185 ctgctctgctcggcttctctgcagtgcgtgctgcccgatgaagcctgcacctcgctggac 136820244
Query: 241 gcctccatgatctgggccatgatgcagaataagaagaccttcaccaagcccctggccgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136820245 gcctccatgatctgggccatgatgcagaataagaagaccttcaccaagcccctggccgtg 136820304
Query: 301 atccaccacgaagtgcagttcaaag 325
|||||||||||||||||||||||||
Sbjct: 136820305 atccaccacgaagtgcagttcaaag 136820329
Score = 161 bits (81), Expect = 1e-36
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 368 cgatttttcatggtctggacacactcaccgtgatgggcatcgcgttcgcagcgtttgtga 427
||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct: 136880781 cgatttttcctggtctggacacactcaccatgatgggcatcgtgttctcagcgtttgtga 136880840
Query: 428 tcggagctctgctgacgggggccttgtggtacatctactctcacacagg 476
|| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 136880841 tccgacctctgctgacggtggccttgtggtacatctactctcacacagg 136880889
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 324 agaaacaggtccaagcacgaaggaatcgaatccaatttctccac 367
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136878141 agaaacaggtccaagcacgaaggaatcgaatccaatttctccac 136878184
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,653,353
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 4
Length of query: 1141
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1120
Effective length of database: 2,808,413,156
Effective search space: 3145422734720
Effective search space used: 3145422734720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)