Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008287
(1007 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039625.1| gasdermin-D [Bos taurus]. 366 e-101
Alignment gi|NP_001071558.1| gasdermin-A [Bos taurus]. 140 2e-33
Alignment gi|NP_001039469.1| gasdermin-C [Bos taurus]. 92 6e-19
Alignment gi|NP_001180041.1| deafness, autosomal dominant 5 [Bos taurus]. 50 4e-06
Alignment gi|XP_002686914.1| PREDICTED: deafness, autosomal dominant 5 [B... 50 4e-06
>ref|NP_001039625.1| gasdermin-D [Bos taurus].
Length = 486
Score = 366 bits (939), Expect = e-101
Identities = 187/257 (72%), Positives = 206/257 (80%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
MASAFE+VV+SVVRELDH ++LTPV SL +S FQPY LL RKP SS FWRPRY CV+LS
Sbjct: 1 MASAFEKVVRSVVRELDH-KDLTPVDSLWSSTSFQPYTLLSRKPLSSRFWRPRYKCVNLS 59
Query: 373 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNV 552
I DILEP APEPA+E G F FHD MDGQLQG V+LAAPGQG+ M++
Sbjct: 60 IRDILEPDAPEPALECGRTFQFHDAMDGQLQGSVKLAAPGQGRLSGGAAVSGSSSASMDL 119
Query: 553 CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG 732
CTLRV PNTW+AMH ERRLRQPE K LQQLRSRG+DVFVVTEVLQTQKEVEVTRTHKQEG
Sbjct: 120 CTLRVTPNTWEAMHHERRLRQPEPKTLQQLRSRGDDVFVVTEVLQTQKEVEVTRTHKQEG 179
Query: 733 SGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPGQKQRTF 912
SGQFALPGA LQG+G+GHLS+KKTVTIPSGS +AFR AQLVIGSDWDILLFP +KQRTF
Sbjct: 180 SGQFALPGAFCLQGKGEGHLSQKKTVTIPSGSTLAFRAAQLVIGSDWDILLFPDKKQRTF 239
Query: 913 RPLREGHSASHGADGQP 963
L+ G S AD P
Sbjct: 240 LSLQAGRRPSSSADSHP 256
>ref|NP_001071558.1| gasdermin-A [Bos taurus].
Length = 446
Score = 140 bits (352), Expect = 2e-33
Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 2/240 (0%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLSIWDI 384
FE V +++ R+L+ +LTP+ SL RF P+CL+ RK S+ FW RY C D + DI
Sbjct: 4 FENVTRALTRQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVCTDYTFLDI 63
Query: 385 LEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCTLR 564
LEP + G F F + +D +++G+V++ + K + V TL
Sbjct: 64 LEPGSSPSDPTDSGNFGFKNMLDARVEGEVDVPKTVKVK----GTAGLSRNSTLEVQTLS 119
Query: 565 VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEGSGQF 744
VAP + +H ER+L EH L+++R RG +++VV EV++ +EV + R + EG F
Sbjct: 120 VAPKALETLHQERKL-MAEHPFLEEMRRRGENLYVVMEVVEAVQEVTLERAGRAEGC--F 176
Query: 745 ALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVI-GSD-WDILLFPGQKQRTFRP 918
+LP L QG ++ K+ VTIP G V+AFRV QL++ G D WDI TF P
Sbjct: 177 SLPFFAPLGLQGS--VNHKEAVTIPKGCVLAFRVRQLMVKGKDEWDIPHIYNDNMHTFPP 234
>ref|NP_001039469.1| gasdermin-C [Bos taurus].
Length = 487
Score = 92.4 bits (228), Expect = 6e-19
Identities = 70/251 (27%), Positives = 129/251 (51%), Gaps = 7/251 (2%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSS-SWFWRPRYTCVDL 369
M S FE K++V+EL ++ P+++L ++ +F LL +K + S FW VD
Sbjct: 1 MPSLFEHTSKNLVKELGD-KDFRPLQNLLSAHKFCQLKLLRKKRRTLSQFWEQPDVPVDH 59
Query: 370 SIWDILEPS--APEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXX 543
++ DILEPS PEP + + F F D + +V++ A +
Sbjct: 60 TLTDILEPSPSVPEPVLSK--KFIFIDKTVWKGAAEVDVTAGLE--VSVSGTATQSCECS 115
Query: 544 MNVCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHK 723
+ V ++ ++P W+ + +R++ E LQ+ R+RG++++VVTE ++ E + +
Sbjct: 116 LEVQSVTISPWDWEDLQ-KRKVLDQEPSFLQECRTRGDNLYVVTEAVKLVNETVLQDSSS 174
Query: 724 QEGSGQFALPGA--VSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWD--ILLFP 891
+G F++P + +G G RK+T+T+P G+V+A++ QLV D +L+
Sbjct: 175 VNATGTFSIPWSFYAKSTAEGSGLKERKRTMTVPQGTVMAYKKKQLVFREDGRAILLISD 234
Query: 892 GQKQRTFRPLR 924
KQ+TF ++
Sbjct: 235 DDKQKTFPEIK 245
>ref|NP_001180041.1| deafness, autosomal dominant 5 [Bos taurus].
Length = 496
Score = 49.7 bits (117), Expect = 4e-06
Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 13/235 (5%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFW-RPRYTCVDLSIWD 381
F + ++ ++E+D G L V +L SD+ Q L+ +K W W RP+Y + +++ D
Sbjct: 2 FAKATRNFLKEVDAGGNLIAVSNLNDSDKLQLLSLVTKK-KRYWCWQRPKYQFLSVTLGD 60
Query: 382 IL-EPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCT 558
+L E P V + + + G +E A GK + T
Sbjct: 61 VLTEDQFLSPVVVESDFVKYEGKFENHVSGTLETAL---GKVKLNIGGKGLVESQSSFGT 117
Query: 559 LR-----VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVV--TEVLQTQKEVEVTRT 717
LR + DA L+ P VLQQ+ R N V V +++ TQK V
Sbjct: 118 LRKQEVDLQQLIGDAQERTINLKNP---VLQQVLERKNAVLCVLTQKIVTTQKCVISEHV 174
Query: 718 HKQEGSGQFA--LPGAVSLQGQGQGHLSRKKTVT--IPSGSVIAFRVAQLVIGSD 870
+E G V + G++ + V IP+ + IA+ V +L + +D
Sbjct: 175 QIEETCGGMVGIQTRTVQVSAMEDGNIIKDTNVVLEIPAPTTIAYGVIELYVRAD 229
>ref|XP_002686914.1| PREDICTED: deafness, autosomal dominant 5 [Bos taurus].
Length = 496
Score = 49.7 bits (117), Expect = 4e-06
Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 13/235 (5%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFW-RPRYTCVDLSIWD 381
F + ++ ++E+D G L V +L SD+ Q L+ +K W W RP+Y + +++ D
Sbjct: 2 FAKATRNFLKEVDAGGNLIAVSNLNDSDKLQLLSLVTKK-KRYWCWQRPKYQFLSVTLGD 60
Query: 382 IL-EPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCT 558
+L E P V + + + G +E A GK + T
Sbjct: 61 VLTEDQFLSPVVVESDFVKYEGKFENHVSGTLETAL---GKVKLNIGGKGLVESQSSFGT 117
Query: 559 LR-----VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVV--TEVLQTQKEVEVTRT 717
LR + DA L+ P VLQQ+ R N V V +++ TQK V
Sbjct: 118 LRKQEVDLQQLIGDAQERTINLKNP---VLQQVLERKNAVLCVLTQKIVTTQKCVISEHV 174
Query: 718 HKQEGSGQFA--LPGAVSLQGQGQGHLSRKKTVT--IPSGSVIAFRVAQLVIGSD 870
+E G V + G++ + V IP+ + IA+ V +L + +D
Sbjct: 175 QIEETCGGMVGIQTRTVQVSAMEDGNIIKDTNVVLEIPAPTTIAYGVIELYVRAD 229
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,018,063
Number of extensions: 1326903
Number of successful extensions: 6607
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6587
Number of HSP's successfully gapped: 5
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008287
(1007 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851732.1| PREDICTED: similar to Gasdermin domain containi... 341 7e-94
Alignment gi|XP_850338.1| PREDICTED: similar to gasdermin 1 [Canis famili... 122 4e-28
Alignment gi|XP_852261.1| PREDICTED: similar to melanoma-derived leucine ... 98 1e-20
Alignment gi|XP_853956.1| PREDICTED: similar to Nonsyndromic hearing impa... 49 8e-06
>ref|XP_851732.1| PREDICTED: similar to Gasdermin domain containing protein 1 [Canis
familiaris].
Length = 583
Score = 341 bits (874), Expect = 7e-94
Identities = 173/269 (64%), Positives = 201/269 (74%), Gaps = 2/269 (0%)
Frame = +1
Query: 151 SPCERRAWPLAL--GSMASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKP 324
S R WP L G+M SAFE V+KSV+RELDH +L PV SL++S FQPYCLL RK
Sbjct: 100 SAAAARPWPRGLHTGAMGSAFEGVIKSVIRELDHRGKLIPVDSLRSSTSFQPYCLLARKL 159
Query: 325 SSSWFWRPRYTCVDLSIWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKF 504
S WFW+PRY C++LSI DILEP+ PEP V+ GPF+ D MDGQLQG VELA PGQ +
Sbjct: 160 SRLWFWKPRYKCINLSIRDILEPNDPEPDVKCDGPFHVCDFMDGQLQGSVELAPPGQVQL 219
Query: 505 XXXXXXXXXXXXXMNVCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVL 684
MNVCTLRV PNTWD M ERRLRQP+HKVL+QLR+ GND+FVVTEVL
Sbjct: 220 AGEATVADNLSTSMNVCTLRVVPNTWDTMRQERRLRQPQHKVLEQLRNCGNDIFVVTEVL 279
Query: 685 QTQKEVEVTRTHKQEGSGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIG 864
QTQKEV VT +KQEGSGQF+LPGA+SL QGQGHL RKKTVTIPSGS++AF VAQLVIG
Sbjct: 280 QTQKEVTVTWIYKQEGSGQFSLPGALSL--QGQGHLRRKKTVTIPSGSILAFEVAQLVIG 337
Query: 865 SDWDILLFPGQKQRTFRPLREGHSASHGA 951
DWD+LLFP +KQRTF+ ++ H + A
Sbjct: 338 PDWDVLLFPNKKQRTFKQSKKNHKPTSSA 366
>ref|XP_850338.1| PREDICTED: similar to gasdermin 1 [Canis familiaris].
Length = 442
Score = 122 bits (307), Expect = 4e-28
Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 2/240 (0%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLSIWDI 384
FE V +++ R+L+ +LTP+ SL RF P+CL+ RK S+ FW RY D ++ D+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVRTDYTLLDV 63
Query: 385 LEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCTLR 564
LEP + G F F T+D +++G+V + Q + +
Sbjct: 64 LEPGSSPSDPTDSGNFSFKKTLDARVEGEVIV----QKTVKVTGTAGLSRSSTLRSRHSQ 119
Query: 565 VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEGSGQF 744
VAP + R EH L+++R+RG +++VV EV++T +EV + R K EG F
Sbjct: 120 VAPYCFSC----HRKLSAEHPFLKEMRNRGENLYVVMEVVETAQEVTLERASKAEGC--F 173
Query: 745 ALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVI--GSDWDILLFPGQKQRTFRP 918
+LP L QG + K+ VTIP G ++AFRV QL++ +WDI +TF P
Sbjct: 174 SLPFFAPLGLQGS--IDHKEAVTIPKGCILAFRVRQLMVKGKEEWDIPHICNDSMQTFPP 231
>ref|XP_852261.1| PREDICTED: similar to melanoma-derived leucine zipper,
extra-nuclear factor [Canis familiaris].
Length = 996
Score = 98.2 bits (243), Expect = 1e-20
Identities = 68/247 (27%), Positives = 122/247 (49%), Gaps = 2/247 (0%)
Frame = +1
Query: 178 LALGSMASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYT 357
L+ +M S FE + K++VREL ++L P++ L +++F+ +L ++ S FW
Sbjct: 159 LSRRNMPSLFEHISKNLVRELGD-KDLRPMRCLSNANQFRQLAILQKRKKRSPFWEQPDI 217
Query: 358 CVDLSIWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXX 537
+ ++ D+LEPS+ P GPF F DT+ QGQV +
Sbjct: 218 PAEYTLMDLLEPSSSVPETAVMGPFLFSDTV--VQQGQVSANVTTGLEMNVSGKATVFHG 275
Query: 538 XXMNVCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRT 717
+ + + P+ W + +R+++ PE L + R R ++++VVT+ ++ +
Sbjct: 276 SSLQFQAVTIPPHNWKDLQ-KRKVQDPELLFLVKCRDRQDNLYVVTDTVELTDTTVLCDN 334
Query: 718 HKQEGSGQFALPGAVSLQGQGQGH--LSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFP 891
G LP +G+GQG R+KT+ +P G+V+A++ QLV + DIL+
Sbjct: 335 RSVNVWGSCFLPFDTFFKGRGQGEGLKVREKTLILPQGTVMAYKRKQLVFKEN-DILISD 393
Query: 892 GQKQRTF 912
K++TF
Sbjct: 394 DDKEKTF 400
Score = 55.5 bits (132), Expect = 8e-08
Identities = 38/91 (41%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Frame = +1
Query: 769 QGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSD-WDILLFP-GQKQRTF---------- 912
Q QGQ H++++KTVTIP G+V+A+RV QLVI D W IL P G+ R
Sbjct: 850 QLQGQSHMAKEKTVTIPQGTVLAYRVLQLVIKEDCWAILYLPEGKLSRDISAGSSFSWAL 909
Query: 913 --RPLREGHSASHGADGQPAAVLPPRLRDEL 999
P +G GA Q A LP LR L
Sbjct: 910 GEEPSFQGLQRQVGAQLQDLATLPAELRHPL 940
>ref|XP_853956.1| PREDICTED: similar to Nonsyndromic hearing impairment protein 5
(Inversely correlated with estrogen receptor expression
1) (ICERE-1) [Canis familiaris].
Length = 503
Score = 48.9 bits (115), Expect = 8e-06
Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 14/245 (5%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFW-RPRYTCVDLSIWD 381
F + ++ ++E+D G L V +L SD+ Q L+ +K W W RP+Y + +++ D
Sbjct: 10 FAKATRNFLKEVDAGGNLIAVPNLNDSDKLQLLSLVTKK-KRFWCWQRPKYQFLSVTLGD 68
Query: 382 IL-EPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCT 558
+L E P V + + G VE A GK + T
Sbjct: 69 VLTENQFLSPVVVESDFVKYESKFQNHVSGTVETAL---GKVKLNIGGKGLVESQSSFGT 125
Query: 559 LRVAPNTWDAMHLER----RLRQPEHKVLQQLRSRGNDVFVV--TEVLQTQKEVEVTRTH 720
LR D L R R + VLQQ+ R N+V V +++ TQ+ V
Sbjct: 126 LR--KQEVDLQQLIRDSTERTINLSNPVLQQVLERKNEVLCVLTQKIVTTQQCVISEHVQ 183
Query: 721 KQEGSGQFA--LPGAVSLQGQGQGHLSRKKTVT--IPSGSVIAFRVAQLVIGSD--WDIL 882
+E G V + + G++++ + IP+ + IA+ + +L + D +++
Sbjct: 184 IEEKCGGIVGIQTKTVQVSAKEDGNITKDTNIALEIPASTTIAYGIIELYVKLDGQFELC 243
Query: 883 LFPGQ 897
L G+
Sbjct: 244 LLQGK 248
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,704,949
Number of extensions: 1362513
Number of successful extensions: 6549
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6519
Number of HSP's successfully gapped: 5
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008287
(1007 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125988.1| PREDICTED: gasdermin-D-like [Sus scrofa]. 491 e-143
Alignment gi|XP_003131539.2| PREDICTED: gasdermin-A-like [Sus scrofa]. 139 2e-33
Alignment gi|XP_003131545.1| PREDICTED: gasdermin-A-like [Sus scrofa]. 139 2e-33
Alignment gi|XP_003361018.1| PREDICTED: gasdermin-A-like [Sus scrofa]. 122 2e-28
Alignment gi|XP_001925367.3| PREDICTED: gasdermin-C-like [Sus scrofa]. 69 4e-12
Alignment gi|XP_003125540.2| PREDICTED: gasdermin-C-like [Sus scrofa]. 60 3e-09
Alignment gi|XP_003131561.2| PREDICTED: gasdermin-B-like [Sus scrofa]. 59 4e-09
Alignment gi|XP_003131549.1| PREDICTED: gasdermin-B-like [Sus scrofa]. 59 4e-09
Alignment gi|XP_003134903.1| PREDICTED: non-syndromic hearing impairment ... 53 3e-07
>ref|XP_003125988.1| PREDICTED: gasdermin-D-like [Sus scrofa].
Length = 488
Score = 491 bits (1264), Expect(2) = e-143
Identities = 242/257 (94%), Positives = 243/257 (94%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS
Sbjct: 1 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 60
Query: 373 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNV 552
IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKF MNV
Sbjct: 61 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFSGGAAVSGSSSASMNV 120
Query: 553 CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG 732
CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG
Sbjct: 121 CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG 180
Query: 733 SGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPGQKQRTF 912
SGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFP +KQRTF
Sbjct: 181 SGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPDKKQRTF 240
Query: 913 RPLREGHSASHGADGQP 963
RPLREGHSASHGADGQP
Sbjct: 241 RPLREGHSASHGADGQP 257
Score = 37.0 bits (84), Expect(2) = e-143
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 956 GSPPQFSRLVSGMSFPS 1006
G PPQFSRLVSGMSFPS
Sbjct: 255 GQPPQFSRLVSGMSFPS 271
>ref|XP_003131539.2| PREDICTED: gasdermin-A-like [Sus scrofa].
Length = 264
Score = 139 bits (351), Expect = 2e-33
Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 2/240 (0%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLSIWDI 384
FE V +++ R+L+ +LTP+ SL RF P+CL+ RK S+ FW RY D ++ D+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYIRTDYTLLDV 63
Query: 385 LEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCTLR 564
LEP + G F F + +D +++G+V++ + V TL
Sbjct: 64 LEPGSSPSDPTDSGNFGFKNMLDARVEGEVDVPK----TVKVTGTAGLSQNSTLEVQTLS 119
Query: 565 VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEGSGQF 744
VAP + +H ER+L EH L+++RSRG +++VV EV++T +EV + R K EG F
Sbjct: 120 VAPKALETLHQERKL-MAEHPFLKEMRSRGENLYVVMEVVETVQEVTLQRAGKAEGC--F 176
Query: 745 ALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVI--GSDWDILLFPGQKQRTFRP 918
+LP L QG ++ K+ VTIP G ++AFRV QLV+ +WDI +TF P
Sbjct: 177 SLPFFAPLGLQGS--INHKEAVTIPKGCILAFRVRQLVVKGRDEWDIPHICNDNMQTFPP 234
>ref|XP_003131545.1| PREDICTED: gasdermin-A-like [Sus scrofa].
Length = 446
Score = 139 bits (351), Expect = 2e-33
Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 2/240 (0%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLSIWDI 384
FE V +++ R+L+ +LTP+ SL RF P+CL+ RK S+ FW RY D ++ D+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYIRTDYTLLDV 63
Query: 385 LEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCTLR 564
LEP + G F F + +D +++G+V++ + V TL
Sbjct: 64 LEPGSSPSDPTDSGNFGFKNMLDARVEGEVDVPK----TVKVTGTAGLSQNSTLEVQTLS 119
Query: 565 VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEGSGQF 744
VAP + +H ER+L EH L+++RSRG +++VV EV++T +EV + R K EG F
Sbjct: 120 VAPKALETLHQERKL-MAEHPFLKEMRSRGENLYVVMEVVETVQEVTLQRAGKAEGC--F 176
Query: 745 ALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVI--GSDWDILLFPGQKQRTFRP 918
+LP L QG ++ K+ VTIP G ++AFRV QLV+ +WDI +TF P
Sbjct: 177 SLPFFAPLGLQGS--INHKEAVTIPKGCILAFRVRQLVVKGRDEWDIPHICNDNMQTFPP 234
>ref|XP_003361018.1| PREDICTED: gasdermin-A-like [Sus scrofa].
Length = 530
Score = 122 bits (307), Expect = 2e-28
Identities = 76/212 (35%), Positives = 114/212 (53%), Gaps = 2/212 (0%)
Frame = +1
Query: 289 RFQPYCLLGRKPSSSWFWRPRYTCVDLSIWDILEPSAPEPAVERGGPFYFHDTMDGQLQG 468
RF P+CL+ RK S+ FW RY D ++ D+LEP + G F F + +D +++G
Sbjct: 116 RFHPFCLVLRKRKSTLFWGARYIRTDYTLLDVLEPGSSPSDPTDSGNFGFKNMLDARVEG 175
Query: 469 QVELAAPGQGKFXXXXXXXXXXXXXMNVCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRS 648
+V++ + V TL VAP + +H ER+L EH L+++RS
Sbjct: 176 EVDVPK----TVKVTGTAGLSQNSTLEVQTLSVAPKALETLHQERKL-MAEHPFLKEMRS 230
Query: 649 RGNDVFVVTEVLQTQKEVEVTRTHKQEGSGQFALPGAVSLQGQGQGHLSRKKTVTIPSGS 828
RG +++VV EV++T +EV + R K EG F+LP L QG ++ K+ VTIP G
Sbjct: 231 RGENLYVVMEVVETVQEVTLQRAGKAEGC--FSLPFFAPLGLQGS--INHKEAVTIPKGC 286
Query: 829 VIAFRVAQLVI--GSDWDILLFPGQKQRTFRP 918
++AFRV QLV+ +WDI +TF P
Sbjct: 287 ILAFRVRQLVVKGRDEWDIPHICNDNMQTFPP 318
>ref|XP_001925367.3| PREDICTED: gasdermin-C-like [Sus scrofa].
Length = 945
Score = 68.9 bits (167), Expect = 4e-12
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 1/188 (0%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSS-SWFWRPRYTCVDL 369
M S FERV K++V+EL ++L PVKS +++F+ + LL +K + + FW +
Sbjct: 1 MTSLFERVSKNLVKELGD-KDLKPVKSPLDTNKFRQFALLRKKRKTRTEFWEKPDVSAEC 59
Query: 370 SIWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMN 549
S+ DILEPS+ P GPF+F D + +++ A + +
Sbjct: 60 SLMDILEPSSLVPETVVTGPFHFKDKVIAMESVHMDVTAGLE--VSVLGEAAQSHGSSLE 117
Query: 550 VCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQE 729
++ + P TW+ + + L K L + R G +++VVTE ++ +
Sbjct: 118 FRSVAIPPTTWEGLQKRKVL----EKKLVKYRDAGQNLYVVTEAVELINGTVLQDKSSIT 173
Query: 730 GSGQFALP 753
G+F LP
Sbjct: 174 ALGKFLLP 181
>ref|XP_003125540.2| PREDICTED: gasdermin-C-like [Sus scrofa].
Length = 251
Score = 59.7 bits (143), Expect = 3e-09
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSS-SWFWRPRYTCVDL 369
MAS FERV K++V+EL ++L PVKS +++F+ + LL +K + + FW +
Sbjct: 1 MASLFERVSKNLVKELGD-KDLKPVKSPLDTNKFRQFALLRKKRKTRTEFWEKPDVSAEC 59
Query: 370 SIWDILEPSAPEPAVERGGPFYFHD 444
S+ DILEPS+ P GPF+F D
Sbjct: 60 SLMDILEPSSLVPETVVTGPFHFKD 84
>ref|XP_003131561.2| PREDICTED: gasdermin-B-like [Sus scrofa].
Length = 413
Score = 58.9 bits (141), Expect = 4e-09
Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 12/264 (4%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
M FE ++VVRE+D + V+SL +DRF L+ +K F+ +Y DLS
Sbjct: 1 MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKR---FFGHQYDKADLS 57
Query: 373 IWDILEPSAPEPAVER--------GGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXX 528
+ DILE + ++ PF D +D +G + + P F
Sbjct: 58 LLDILEVQEGDELFDKLVSGLQDHKAPFRVTDNVDS--KGGLTVKLPENMMF-------E 108
Query: 529 XXXXXMNVCTLRVA----PNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQK 696
C V+ P A +L++ Q +R+ D+++VTE L T
Sbjct: 109 VATYRSRKCNAEVSGSRTPRQLLAALENTKLKRKLPDSFQSIRAMREDLYLVTETLTT-- 166
Query: 697 EVEVTRTHKQEGSGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWD 876
T+T E + V G + R+K VT+P G+V+ +R+ QLV ++
Sbjct: 167 ----TKTETLESEQGCVIQLLVDCLG-FRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEES 221
Query: 877 ILLFPGQKQRTFRPLREGHSASHG 948
+ + +K ++F ++G ++ G
Sbjct: 222 MNII-SEKTKSFPHEKDGGASCLG 244
>ref|XP_003131549.1| PREDICTED: gasdermin-B-like [Sus scrofa].
Length = 413
Score = 58.9 bits (141), Expect = 4e-09
Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 12/264 (4%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
M FE ++VVRE+D + V+SL +DRF L+ +K F+ +Y DLS
Sbjct: 1 MPKEFEAATRAVVREVDPRGDWIAVRSLTDADRFHCLYLVKKKKR---FFGHQYDKADLS 57
Query: 373 IWDILEPSAPEPAVER--------GGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXX 528
+ DILE + ++ PF D +D +G + + P F
Sbjct: 58 LLDILEVQEGDELFDKLVSGLQDHKAPFRVTDNVDS--KGGLTVKLPENMMF-------E 108
Query: 529 XXXXXMNVCTLRVA----PNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQK 696
C V+ P A +L++ Q +R+ D+++VTE L T
Sbjct: 109 VATYRSRKCNAEVSGSRTPRQLLAALENTKLKRKLPDSFQSIRAMREDLYLVTETLTT-- 166
Query: 697 EVEVTRTHKQEGSGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWD 876
T+T E + V G + R+K VT+P G+V+ +R+ QLV ++
Sbjct: 167 ----TKTETLESEQGCVIQLLVDCLG-FRYRRKRQKAVTVPPGTVLGYRLKQLVFPNEES 221
Query: 877 ILLFPGQKQRTFRPLREGHSASHG 948
+ + +K ++F ++G ++ G
Sbjct: 222 MNII-SEKTKSFPHEKDGGASCLG 244
>ref|XP_003134903.1| PREDICTED: non-syndromic hearing impairment protein 5 [Sus scrofa].
Length = 495
Score = 52.8 bits (125), Expect = 3e-07
Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 10/269 (3%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFW-RPRYTCVDLSIWD 381
F + K+ +RE+D G LT V +L SD+ Q L+ +K W W +P+Y + +++ D
Sbjct: 2 FAKATKNFLREVDTGGNLTAVSNLNDSDKLQLLSLVTKK-RRFWCWQKPKYQFLSVTLGD 60
Query: 382 IL-EPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCT 558
+L E P V + + +G ++ A GK + T
Sbjct: 61 VLTEDQILSPVVVESDFVKYEGRFENHTRGALKTAL---GKAKLTLGGKGFVESQSSFGT 117
Query: 559 LRVAPNTWDAMHLER----RLRQPEHKVLQQLRSRGNDVF-VVTEVLQTQKEVEVTRTHK 723
LR D L R R ++ VLQQ+ R N+V V+T+ + T ++ ++ +
Sbjct: 118 LR--KQEVDLQQLIRDAQGRTIDLKNPVLQQVLERKNEVLCVLTQKIVTTQKCVISEHVQ 175
Query: 724 QEGSGQFALP-GAVSLQGQGQGHLSRKKTVT--IPSGSVIAFRVAQLVIGSDWDILLFPG 894
E G + V + +G++S+ V IP+ + +A+ V +L + D
Sbjct: 176 MEKCGVVGIQLKTVQVSVMDRGNISKGSNVVLEIPAPTTLAYGVIELYLRVD-------- 227
Query: 895 QKQRTFRPLREGHSASHGADGQPAAVLPP 981
Q F L+E H A+L P
Sbjct: 228 -GQFEFCLLQEKHGGFQQTRESSCALLEP 255
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,241,434
Number of extensions: 864033
Number of successful extensions: 4379
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4355
Number of HSP's successfully gapped: 10
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008287
(1007 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081236.1| gasdermin-D [Mus musculus]. 293 1e-79
Alignment gi|XP_984438.1| PREDICTED: gasdermin-A [Mus musculus]. 141 7e-34
Alignment gi|NP_067322.1| gasdermin-A [Mus musculus]. 133 2e-31
Alignment gi|NP_084003.2| gasdermin-A2 [Mus musculus]. 120 2e-27
Alignment gi|NP_001007462.1| gasdermin-A3 [Mus musculus]. 119 3e-27
Alignment gi|NP_001161053.1| gasdermin C-like 1 [Mus musculus]. 100 1e-21
Alignment gi|NP_083268.1| gasdermin-C4 [Mus musculus]. 67 2e-11
Alignment gi|NP_113555.1| gasdermin-C [Mus musculus]. 67 3e-11
Alignment gi|NP_001161746.1| gasdermin-C2 [Mus musculus]. 66 4e-11
Alignment gi|NP_808580.2| gasdermin-C2 [Mus musculus]. 66 4e-11
>ref|NP_081236.1| gasdermin-D [Mus musculus].
Length = 487
Score = 293 bits (750), Expect = 1e-79
Identities = 147/243 (60%), Positives = 182/243 (74%), Gaps = 1/243 (0%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGR-ELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDL 369
M SAFE+VVK+V++E+ R +L PV SL+ S F+PYCLL RK SSS FW+PRY+CV+L
Sbjct: 1 MPSAFEKVVKNVIKEVSGSRGDLIPVDSLRNSTSFRPYCLLNRKFSSSRFWKPRYSCVNL 60
Query: 370 SIWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMN 549
SI DILEPSAPEP E G F D +DG +QG+V L+ G+GK MN
Sbjct: 61 SIKDILEPSAPEPEPECFGSFKVSDVVDGNIQGRVMLSGMGEGKISGGAAVSDSSSASMN 120
Query: 550 VCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQE 729
VC LRV TW+ M ER L+QPE+K+LQQLRSRG+D+FVVTEVLQT++EV++T H QE
Sbjct: 121 VCILRVTQKTWETMQHERHLQQPENKILQQLRSRGDDLFVVTEVLQTKEEVQITEVHSQE 180
Query: 730 GSGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPGQKQRT 909
GSGQF LPGA+ L+G+G+GH SRKK VTIP+GS++AFRVAQL+IGS WDILL +KQRT
Sbjct: 181 GSGQFTLPGALCLKGEGKGHQSRKKMVTIPAGSILAFRVAQLLIGSKWDILLVSDEKQRT 240
Query: 910 FRP 918
F P
Sbjct: 241 FEP 243
>ref|XP_984438.1| PREDICTED: gasdermin-A [Mus musculus].
Length = 239
Score = 141 bits (356), Expect = 7e-34
Identities = 89/235 (37%), Positives = 128/235 (54%), Gaps = 4/235 (1%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSS-WFWRPRYTCVDL 369
M+S F R KS+VREL EL PV SL +S R +P+CL+ +K S W W D
Sbjct: 1 MSSLFLRSTKSLVRELGRKGELVPVDSLSSSQRLRPFCLVRKKHKSYLWPWDTPLIPTDF 60
Query: 370 SIWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMN 549
S+ D+LEP P+P V GP Y + G L G V L+A QG+ +
Sbjct: 61 SLLDVLEPGCPDPEVNHSGPIYTWEKEAGGLTGAVSLSAGLQGQ--ATGSGKTTRLSALA 118
Query: 550 VCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGN--DVFVVTEVLQTQKEVEVTRTHK 723
V TL V+P TW+ + +R+LR P LQ+L SR ++VVTE ++T ++ +
Sbjct: 119 VQTLWVSPCTWEMLLEKRKLRSPRPSFLQELHSRKERESLYVVTEAVETLQDAMLQSHSH 178
Query: 724 QEGSGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSD-WDILL 885
G+GQ +L Q QGQ ++ +K V+IP GSV+A+RV QL++ D W ++L
Sbjct: 179 MLGAGQLSLLQLGHGQVQGQRNVDTEKMVSIPQGSVLAYRVLQLLVEEDGWGVML 233
>ref|NP_067322.1| gasdermin-A [Mus musculus].
Length = 446
Score = 133 bits (335), Expect = 2e-31
Identities = 83/240 (34%), Positives = 130/240 (54%), Gaps = 2/240 (0%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLSIWDI 384
FE V +++ R+L+ +LTP+ SL RF P+CL+ RK S+ FW RY D ++ D+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVHTDYTLLDV 63
Query: 385 LEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCTLR 564
LEP + G F F + +D +++G V++ + K + V TL
Sbjct: 64 LEPGSSPSDPTDSGNFSFKNMLDARVEGDVDVPKTVKVK----GTAGLSRSSTLEVQTLS 119
Query: 565 VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEGSGQF 744
VAP + +H ER+L +H L+++R RG +++VV EV++T +EV + R K EG F
Sbjct: 120 VAPTALENLHKERKL-SADHPFLKEMRERGENLYVVMEVVETLQEVTLERAGKAEGC--F 176
Query: 745 ALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIG--SDWDILLFPGQKQRTFRP 918
+LP L QG ++ K+ VTIP G V+A+RV QL++ +W I +TF P
Sbjct: 177 SLPFFAPLGLQGS--VNHKEAVTIPKGCVLAYRVRQLMVNGKDEWGIPHICNDSMQTFPP 234
>ref|NP_084003.2| gasdermin-A2 [Mus musculus].
Length = 443
Score = 120 bits (301), Expect = 2e-27
Identities = 81/243 (33%), Positives = 127/243 (52%), Gaps = 2/243 (0%)
Frame = +1
Query: 199 SAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLSIW 378
S FE V +++ R+L+ +LTP+ SL RF P+CL+ RK S+ FW RY D ++
Sbjct: 2 SMFEDVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVRTDYTLL 61
Query: 379 DILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCT 558
D+LEP + G F F + +D +++G VE+ + K + V
Sbjct: 62 DVLEPGSSPSDPTLLGNFSFKNMLDVRVEGDVEVPTMMKVK----GTVGLSQSSTLEVQM 117
Query: 559 LRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEGSG 738
L VAP + +H+ER+L +H L+++R +++VV EV++ ++EV + R
Sbjct: 118 LSVAPTALENLHMERKL-SADHPFLKEMREYKQNLYVVMEVVKAKQEVTLKRASNAISKF 176
Query: 739 QFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVI-GSD-WDILLFPGQKQRTF 912
LP ++ LQG ++ K+ VTIP G V+A+RV QL+I G D W I TF
Sbjct: 177 SLNLP-SLGLQGS----VNHKEAVTIPKGCVLAYRVRQLIIYGKDEWGIPYICTDNMPTF 231
Query: 913 RPL 921
PL
Sbjct: 232 NPL 234
>ref|NP_001007462.1| gasdermin-A3 [Mus musculus].
Length = 464
Score = 119 bits (299), Expect = 3e-27
Identities = 81/242 (33%), Positives = 131/242 (54%), Gaps = 2/242 (0%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLSIWDI 384
FE V +++VREL+ +LTP+ SL F+P+CL+ RK S+ FW RY D ++ D+
Sbjct: 4 FEDVTRALVRELNPRGDLTPLDSLIDFKHFRPFCLVLRKRKSTLFWGARYVRTDYTLLDL 63
Query: 385 LEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCTLR 564
LEP + + G F F + +D Q+QG VE+ + K + V TL
Sbjct: 64 LEPGSSPSDLTDSGNFSFKNMLDVQVQGLVEVPKTVKVK----GTAGLSQSSTLEVQTLS 119
Query: 565 VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEGSGQF 744
VAP+ + + ER+L +H L ++R +++VV E ++ ++EV V +T + F
Sbjct: 120 VAPSALENLKKERKL-SADHSFLNEMRYHEKNLYVVMEAVEAKQEVTVEQT--GNANAIF 176
Query: 745 ALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRV--AQLVIGSDWDILLFPGQKQRTFRP 918
+LP +++L G QG L+ K VTIP G V+A+RV ++ + + WDI +TF
Sbjct: 177 SLP-SLALLGL-QGSLNNNKAVTIPKGCVLAYRVRLLRVFLFNLWDIPYICNDSMQTFPK 234
Query: 919 LR 924
+R
Sbjct: 235 IR 236
>ref|NP_001161053.1| gasdermin C-like 1 [Mus musculus].
Length = 160
Score = 100 bits (250), Expect = 1e-21
Identities = 61/154 (39%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSS-SWFWRPRYTCVDL 369
M+S F R KS+VREL EL PV SL +S R +P+CL+ +K S W W D
Sbjct: 1 MSSLFLRSTKSLVRELGRKGELVPVDSLSSSQRLRPFCLVRKKHKSYLWPWDTPLIPTDF 60
Query: 370 SIWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMN 549
S+ D+LEP P+P V GP Y + G L G V L+A QG+ +
Sbjct: 61 SLLDVLEPGCPDPEVNHSGPIYTWEKEAGGLTGAVSLSAGLQGQ--VTGSGKTTCLSALA 118
Query: 550 VCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSR 651
V TL V+P TW+ + +R+LR P LQ+L SR
Sbjct: 119 VQTLWVSPCTWEMLLEKRKLRSPRRSFLQELHSR 152
>ref|NP_083268.1| gasdermin-C4 [Mus musculus].
Length = 480
Score = 67.0 bits (162), Expect = 2e-11
Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 5/249 (2%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
M +F+R K VV++L GR+L PV+ L + +F+ + +L P S W V +
Sbjct: 1 MGYSFDRASKDVVKKLQ-GRDLRPVECLSDATKFRLFHILQETPRSGW--ETEDIPVGFT 57
Query: 373 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNV 552
+ D+LEP+ P P E P F L+ + +A +G + V
Sbjct: 58 LLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARG----GVGYVGYGGYNIEV 113
Query: 553 CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG 732
+ + PN + R+L ++ R +++VVTE + K+ +T
Sbjct: 114 QSTSI-PNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGL----S 168
Query: 733 SGQFALPGAVS--LQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPGQKQR 906
S + G + +G+ S K ++ IP GSV+A++ QLVI ++ ++L K++
Sbjct: 169 SVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKK 228
Query: 907 -TF--RPLR 924
TF RPL+
Sbjct: 229 MTFPDRPLK 237
>ref|NP_113555.1| gasdermin-C [Mus musculus].
Length = 468
Score = 66.6 bits (161), Expect = 3e-11
Identities = 63/248 (25%), Positives = 111/248 (44%), Gaps = 4/248 (1%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
M+ F+ + K VV++L GR+L PVK L + +F + +L ++ SS + Y V +
Sbjct: 1 MSYTFDWLSKDVVKKLQ-GRDLRPVKCLSDATKFCLFNIL-QETSSRLALKTEYIPVGFT 58
Query: 373 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQ--VELAAPGQGKFXXXXXXXXXXXXXM 546
+ +LEP+ P P E P T+ +L+ VE A G+ F
Sbjct: 59 LLHLLEPNIPVPEPEVSAPIPLKHTISQKLKADLDVETIAGGEAGFVKSCGYDIEVQS-- 116
Query: 547 NVCTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQ 726
+ PN R+L ++ G +++VVTE + K+ + T
Sbjct: 117 -----KSIPNPKLESLQNRKLLDQLPTFMKTCWKDGKNLYVVTEAYEVTKDTVLEGTSNS 171
Query: 727 EGSGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPG--QK 900
+ + + + V + G GQ + ++ I GSV+A++ QLVI + ++L +K
Sbjct: 172 KFAIKGIINQLVKVGGSGQWQTEKTDSIPIQKGSVLAYKKQQLVIEDNTCVILTSANTKK 231
Query: 901 QRTFRPLR 924
+ TF P+R
Sbjct: 232 KMTF-PMR 238
>ref|NP_001161746.1| gasdermin-C2 [Mus musculus].
Length = 480
Score = 66.2 bits (160), Expect = 4e-11
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 2/244 (0%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
M +F+R K VV++L GR+L PV+ L + +F+ + +L P S W V +
Sbjct: 1 MGYSFDRASKDVVKKLQ-GRDLRPVECLSDATKFRLFHILQETPRSGW--ETEDIPVGFT 57
Query: 373 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNV 552
+ D+LEP+ P P E P F L+ + +A +G + V
Sbjct: 58 LLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARG----GVGYVGYGGYNIEV 113
Query: 553 CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG 732
+ + PN + R+L ++ R +++VVTE + K+ +T
Sbjct: 114 QSTSI-PNPKLEILQNRKLLDNLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGL----S 168
Query: 733 SGQFALPGAVS--LQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPGQKQR 906
S ++ G + +G+ S K ++ IP GSV+A++ QLVI ++ ++L K++
Sbjct: 169 SVNLSVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKK 228
Query: 907 TFRP 918
P
Sbjct: 229 MTFP 232
>ref|NP_808580.2| gasdermin-C2 [Mus musculus].
Length = 480
Score = 66.2 bits (160), Expect = 4e-11
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 2/244 (0%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
M +F+R K VV++L GR+L PV+ L + +F+ + +L P S W V +
Sbjct: 1 MGYSFDRASKDVVKKLQ-GRDLRPVECLSDATKFRLFHILQETPRSGW--ETEDIPVGFT 57
Query: 373 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNV 552
+ D+LEP+ P P E P F L+ + +A +G + V
Sbjct: 58 LLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARG----GVGYVGYGGYNIEV 113
Query: 553 CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG 732
+ + PN + R+L ++ R +++VVTE + K+ +T
Sbjct: 114 QSTSI-PNPKLEILQNRKLLDNLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGL----S 168
Query: 733 SGQFALPGAVS--LQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPGQKQR 906
S ++ G + +G+ S K ++ IP GSV+A++ QLVI ++ ++L K++
Sbjct: 169 SVNLSVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKK 228
Query: 907 TFRP 918
P
Sbjct: 229 MTFP 232
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,787,022
Number of extensions: 1077142
Number of successful extensions: 5050
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4997
Number of HSP's successfully gapped: 11
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008287
(1007 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159709.1| gasdermin-D [Homo sapiens]. 348 4e-96
Alignment gi|NP_079012.3| gasdermin-D [Homo sapiens]. 348 4e-96
Alignment gi|NP_835465.2| gasdermin-A [Homo sapiens]. 123 3e-28
Alignment gi|NP_113603.1| gasdermin-C [Homo sapiens]. 91 2e-18
Alignment gi|NP_001120925.1| non-syndromic hearing impairment protein 5 i... 50 4e-06
Alignment gi|NP_004394.1| non-syndromic hearing impairment protein 5 isof... 50 4e-06
>ref|NP_001159709.1| gasdermin-D [Homo sapiens].
Length = 484
Score = 348 bits (893), Expect = 4e-96
Identities = 177/255 (69%), Positives = 201/255 (78%), Gaps = 2/255 (0%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
M SAFERVV+ VV+ELDHG E PV SLQ+S FQPYCL+ RKPSSSWFW+PRY CV+LS
Sbjct: 1 MGSAFERVVRRVVQELDHGGEFIPVTSLQSSTGFQPYCLVVRKPSSSWFWKPRYKCVNLS 60
Query: 373 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNV 552
I DILEP A EP V+RG F+F+D MDGQ+QG VELAAPGQ K MNV
Sbjct: 61 IKDILEPDAAEPDVQRGRSFHFYDAMDGQIQGSVELAAPGQAKIAGGAAVSDSSSTSMNV 120
Query: 553 CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG 732
+L V PNTW + ER LRQPEHKVLQQLRSRG++V+VVTEVLQTQKEVEVTRTHK+EG
Sbjct: 121 YSLSVDPNTWQTLLHERHLRQPEHKVLQQLRSRGDNVYVVTEVLQTQKEVEVTRTHKREG 180
Query: 733 SGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPGQKQRTF 912
SG+F+LPGA LQG+GQGHLS+KKTVTIPSGS +AFRVAQLVI SD D+LLFP +KQRTF
Sbjct: 181 SGRFSLPGATCLQGEGQGHLSQKKTVTIPSGSTLAFRVAQLVIDSDLDVLLFPDKKQRTF 240
Query: 913 RPLREGH--SASHGA 951
+P GH S S GA
Sbjct: 241 QPPATGHKRSTSEGA 255
>ref|NP_079012.3| gasdermin-D [Homo sapiens].
Length = 484
Score = 348 bits (893), Expect = 4e-96
Identities = 177/255 (69%), Positives = 201/255 (78%), Gaps = 2/255 (0%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLS 372
M SAFERVV+ VV+ELDHG E PV SLQ+S FQPYCL+ RKPSSSWFW+PRY CV+LS
Sbjct: 1 MGSAFERVVRRVVQELDHGGEFIPVTSLQSSTGFQPYCLVVRKPSSSWFWKPRYKCVNLS 60
Query: 373 IWDILEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNV 552
I DILEP A EP V+RG F+F+D MDGQ+QG VELAAPGQ K MNV
Sbjct: 61 IKDILEPDAAEPDVQRGRSFHFYDAMDGQIQGSVELAAPGQAKIAGGAAVSDSSSTSMNV 120
Query: 553 CTLRVAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEG 732
+L V PNTW + ER LRQPEHKVLQQLRSRG++V+VVTEVLQTQKEVEVTRTHK+EG
Sbjct: 121 YSLSVDPNTWQTLLHERHLRQPEHKVLQQLRSRGDNVYVVTEVLQTQKEVEVTRTHKREG 180
Query: 733 SGQFALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVIGSDWDILLFPGQKQRTF 912
SG+F+LPGA LQG+GQGHLS+KKTVTIPSGS +AFRVAQLVI SD D+LLFP +KQRTF
Sbjct: 181 SGRFSLPGATCLQGEGQGHLSQKKTVTIPSGSTLAFRVAQLVIDSDLDVLLFPDKKQRTF 240
Query: 913 RPLREGH--SASHGA 951
+P GH S S GA
Sbjct: 241 QPPATGHKRSTSEGA 255
>ref|NP_835465.2| gasdermin-A [Homo sapiens].
Length = 445
Score = 123 bits (308), Expect = 3e-28
Identities = 83/240 (34%), Positives = 130/240 (54%), Gaps = 2/240 (0%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFWRPRYTCVDLSIWDI 384
FE V +++ R+L+ +LTP+ SL RF P+CL+ RK S+ FW RY D ++ D+
Sbjct: 4 FENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVRTDYTLLDV 63
Query: 385 LEPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCTLR 564
LEP + G F F + +D +++G V++ + K + V TL
Sbjct: 64 LEPGSSPSDPTDTGNFGFKNMLDTRVEGDVDVPKTVKVK----GTAGLSQNSTLEVQTLS 119
Query: 565 VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQKEVEVTRTHKQEGSGQF 744
VAP + + ER+L +H L++++ +G +++VV EV++T +EV + R K E F
Sbjct: 120 VAPKALETVQ-ERKL-AADHPFLKEMQDQGENLYVVMEVVETVQEVTLERAGKAEAC--F 175
Query: 745 ALPGAVSLQGQGQGHLSRKKTVTIPSGSVIAFRVAQLVI-GSD-WDILLFPGQKQRTFRP 918
+LP L QG ++ K+ VTIP G V+AFRV QL++ G D WDI +TF P
Sbjct: 176 SLPFFAPLGLQGS--INHKEAVTIPKGCVLAFRVRQLMVKGKDEWDIPHICNDNMQTFPP 233
>ref|NP_113603.1| gasdermin-C [Homo sapiens].
Length = 508
Score = 90.5 bits (223), Expect = 2e-18
Identities = 79/260 (30%), Positives = 128/260 (49%), Gaps = 19/260 (7%)
Frame = +1
Query: 193 MASAFERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSS-SWFWRPR-YTCVD 366
M S ER+ K++V+E+ ++LTPVK L ++ + + + +L +K S S FW Y V+
Sbjct: 1 MPSMLERISKNLVKEIG-SKDLTPVKYLLSATKLRQFVILRKKKDSRSSFWEQSDYVPVE 59
Query: 367 LSIWDILEPSAPEPAVERGGPFYFHDTM------DGQLQGQVELAAPGQGKFXXXXXXXX 528
S+ DILEPS+ GPF+F D M D + +E++ G+
Sbjct: 60 FSLNDILEPSSSVLETVVTGPFHFSDIMIQKHKADMGVNVGIEVSVSGEASVD------- 112
Query: 529 XXXXXMNVCTLRVAPNTWDAMHLE----RRLRQPEHKVLQQLRSRGNDVFVVTEVLQTQK 696
+ C+L T + +LE R+L PE L++ R RG++++VVTE
Sbjct: 113 ------HGCSLEFQIVTIPSPNLEDFQKRKLLDPEPSFLKECRRRGDNLYVVTEA----- 161
Query: 697 EVEVTRTHKQEGSGQFALPGAVSL-------QGQGQGHLSRKKTVTIPSGSVIAFRVAQL 855
VE+ S + G ++L QGQG+ +KK +T+ G V+A++ QL
Sbjct: 162 -VELINNTVLYDSSSVNILGKIALWITYGKGQGQGESLRVKKKALTLQKGMVMAYKRKQL 220
Query: 856 VIGSDWDILLFPGQKQRTFR 915
VI + IL+ +QRTF+
Sbjct: 221 VI-KEKAILISDDDEQRTFQ 239
>ref|NP_001120925.1| non-syndromic hearing impairment protein 5 isoform a [Homo
sapiens].
Length = 496
Score = 49.7 bits (117), Expect = 4e-06
Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 14/236 (5%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFW-RPRYTCVDLSIWD 381
F + ++ +RE+D +L V +L SD+ Q L+ +K W W RP+Y + L++ D
Sbjct: 2 FAKATRNFLREVDADGDLIAVSNLNDSDKLQLLSLVTKK-KRFWCWQRPKYQFLSLTLGD 60
Query: 382 IL-EPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCT 558
+L E P P V + + G +E A GK + T
Sbjct: 61 VLIEDQFPSPVVVESDFVKYEGKFANHVSGTLETAL---GKVKLNLGGSSRVESQSSFGT 117
Query: 559 LR-----VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVF-VVTEVLQTQKEVEVTRTH 720
LR + D+ LR P VLQQ+ N+V V+T+ + T ++ ++ H
Sbjct: 118 LRKQEVDLQQLIRDSAERTINLRNP---VLQQVLEGRNEVLCVLTQKITTMQKCVISE-H 173
Query: 721 KQEGSGQFALPG----AVSLQGQGQGHLSRKKTVT--IPSGSVIAFRVAQLVIGSD 870
Q + G V + G++++ V IP+ + IA+ V +L + D
Sbjct: 174 MQVEEKCGGIVGIQTKTVQVSATEDGNVTKDSNVVLEIPAATTIAYGVIELYVKLD 229
>ref|NP_004394.1| non-syndromic hearing impairment protein 5 isoform a [Homo
sapiens].
Length = 496
Score = 49.7 bits (117), Expect = 4e-06
Identities = 58/236 (24%), Positives = 99/236 (41%), Gaps = 14/236 (5%)
Frame = +1
Query: 205 FERVVKSVVRELDHGRELTPVKSLQTSDRFQPYCLLGRKPSSSWFW-RPRYTCVDLSIWD 381
F + ++ +RE+D +L V +L SD+ Q L+ +K W W RP+Y + L++ D
Sbjct: 2 FAKATRNFLREVDADGDLIAVSNLNDSDKLQLLSLVTKK-KRFWCWQRPKYQFLSLTLGD 60
Query: 382 IL-EPSAPEPAVERGGPFYFHDTMDGQLQGQVELAAPGQGKFXXXXXXXXXXXXXMNVCT 558
+L E P P V + + G +E A GK + T
Sbjct: 61 VLIEDQFPSPVVVESDFVKYEGKFANHVSGTLETAL---GKVKLNLGGSSRVESQSSFGT 117
Query: 559 LR-----VAPNTWDAMHLERRLRQPEHKVLQQLRSRGNDVF-VVTEVLQTQKEVEVTRTH 720
LR + D+ LR P VLQQ+ N+V V+T+ + T ++ ++ H
Sbjct: 118 LRKQEVDLQQLIRDSAERTINLRNP---VLQQVLEGRNEVLCVLTQKITTMQKCVISE-H 173
Query: 721 KQEGSGQFALPG----AVSLQGQGQGHLSRKKTVT--IPSGSVIAFRVAQLVIGSD 870
Q + G V + G++++ V IP+ + IA+ V +L + D
Sbjct: 174 MQVEEKCGGIVGIQTKTVQVSATEDGNVTKDSNVVLEIPAATTIAYGVIELYVKLD 229
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,752,803
Number of extensions: 1321112
Number of successful extensions: 6429
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6400
Number of HSP's successfully gapped: 6
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008287
(1007 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 539 e-150
>Sscrofa_Chr04
|| Length = 143465943
Score = 539 bits (272), Expect = e-150
Identities = 272/272 (100%)
Strand = Plus / Minus
Query: 138 ctggagacagccaagtccctgtgagcgcagggcctggccccttgccctcgggagcatggc 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057736 ctggagacagccaagtccctgtgagcgcagggcctggccccttgccctcgggagcatggc 1057677
Query: 198 atcagcctttgagagggtggtcaagagcgtggtccgggagctggaccacggcagggaact 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057676 atcagcctttgagagggtggtcaagagcgtggtccgggagctggaccacggcagggaact 1057617
Query: 258 gacccctgtcaagagcctgcagacctctgaccgcttccagccctactgccttctgggcag 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057616 gacccctgtcaagagcctgcagacctctgaccgcttccagccctactgccttctgggcag 1057557
Query: 318 gaagccctcgagttcatggttctggagaccccgctacacatgtgttgacctgtccatctg 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057556 gaagccctcgagttcatggttctggagaccccgctacacatgtgttgacctgtccatctg 1057497
Query: 378 ggacatcctggagcccagtgccccggagccag 409
||||||||||||||||||||||||||||||||
Sbjct: 1057496 ggacatcctggagcccagtgccccggagccag 1057465
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Minus
Query: 406 ccagctgtggagcgtggcggccccttctacttccatgacactatggacgggcagctgcaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057288 ccagctgtggagcgtggcggccccttctacttccatgacactatggacgggcagctgcaa 1057229
Query: 466 ggccaggtggagctggcagccccaggacaggggaagttctccggcggggccgcggtgtct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057228 ggccaggtggagctggcagccccaggacaggggaagttctccggcggggccgcggtgtct 1057169
Query: 526 ggcagctccagcgcctcgatgaacgtgtgcacgctacgagtggcccccaacacctgggac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057168 ggcagctccagcgcctcgatgaacgtgtgcacgctacgagtggcccccaacacctgggac 1057109
Query: 586 gccatgcaccttgaaagg 603
||||||||||||||||||
Sbjct: 1057108 gccatgcaccttgaaagg 1057091
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 601 aggcgcctgcggcagcctgagcacaaagtcctgcagcagctgcggagtcgcgggaacgat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056509 aggcgcctgcggcagcctgagcacaaagtcctgcagcagctgcggagtcgcgggaacgat 1056450
Query: 661 gtgttcgtggtgacggaggtgctccagacgcagaaggaggtggaggtcacgcggacccac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056449 gtgttcgtggtgacggaggtgctccagacgcagaaggaggtggaggtcacgcggacccac 1056390
Query: 721 aagcaggagggctcgggccagtttgcccttcctggagctgtgtccttgcagg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056389 aagcaggagggctcgggccagtttgcccttcctggagctgtgtccttgcagg 1056338
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 769 cagggccagggccagggccacctgagccggaagaagacggtcaccatcccctcgggcagc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056220 cagggccagggccagggccacctgagccggaagaagacggtcaccatcccctcgggcagc 1056161
Query: 829 gtcattgcatttcgggtggcccagctggtgattggttctgactggg 874
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056160 gtcattgcatttcgggtggcccagctggtgattggttctgactggg 1056115
Score = 145 bits (73), Expect = 5e-32
Identities = 80/81 (98%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 927 aggccatagcgcctcccacggtgcagatgggcagcccgccgcagttctcccgcctcgtct 986
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1055490 aggccatagcgcctcccacggtgcagatgggcagcc-gccgcagttctcccgcctcgtct 1055432
Query: 987 ccgggatgagcttcccctctg 1007
|||||||||||||||||||||
Sbjct: 1055431 ccgggatgagcttcccctctg 1055411
Score = 81.8 bits (41), Expect = 7e-13
Identities = 55/57 (96%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 874 gacatccttctcttccccggaca-gaagcagcgaaccttcaggccgctgcgggaagg 929
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1055853 gacatccttctcttccc-ggacaagaagcagcgaaccttcaggccgctgcgggaagg 1055798
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,373,351
Number of extensions: 252
Number of successful extensions: 252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 6
Length of query: 1007
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 986
Effective length of database: 2,808,413,156
Effective search space: 2769095371816
Effective search space used: 2769095371816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)