Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008289
(1520 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179355.1| protoporphyrinogen oxidase [Bos taurus]. 606 e-173
Alignment gi|XP_002685897.1| PREDICTED: protoporphyrinogen oxidase [Bos t... 606 e-173
>ref|NP_001179355.1| protoporphyrinogen oxidase [Bos taurus].
Length = 477
Score = 606 bits (1562), Expect = e-173
Identities = 321/427 (75%), Positives = 342/427 (80%), Gaps = 8/427 (1%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASY+LSRAPCPPKVVLVEGSERLGGWIRS+RGPDGA+FELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYYLSRAPCPPKVVLVEGSERLGGWIRSVRGPDGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LPSG RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPSGIRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLR+LTTPRGKDPDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRDLTTPRGKDPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAGR PQ DSALIRQA+AERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGRGPQLDSALIRQAQAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
+AHLTSRGVSVL+GQPV GLSLQAEG WKVSL DSSLEADHIISA+PASVLSK
Sbjct: 241 HAHLTSRGVSVLQGQPVCGLSLQAEGRWKVSLEDSSLEADHIISAIPASVLSKLLPAEAT 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGSCMTQL--------L 1281
STI AVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILG + L
Sbjct: 301 PLARALSTITAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSL 360
Query: 1282 SLSRMEALLASE*LLCWEVPGYRH*KPEAVSYPXSCSXRRQRKQLPHS*V*GATSHCLXH 1461
R+ +L L E G V ++ + SHCL H
Sbjct: 361 PGLRLTVMLGGSWLQTLEARG-------CVLSQELLQQEAEKAAATQLGLNEPPSHCLVH 413
Query: 1462 LHRTVSP 1482
LH+ P
Sbjct: 414 LHKNSIP 420
Score = 120 bits (302), Expect = 2e-27
Identities = 66/101 (65%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Frame = +3
Query: 1215 IWAFGAILRRPSHP---GIVYDSVAFPEQDGSPSGLRVTVMLGGSWVQTLEARSCVLSXE 1385
+ FG ++ P GIVYDSVAFPEQDGS GLR+TVMLGGSW+QTLEAR CVLS E
Sbjct: 328 VQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSLPGLRLTVMLGGSWLQTLEARGCVLSQE 387
Query: 1386 LFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIPQYTLGHWQ 1505
L QEAEKA ATQLGL S L +N IPQYTLGHWQ
Sbjct: 388 LLQQEAEKAAATQLGLNEPPSHCLVHLHKNSIPQYTLGHWQ 428
>ref|XP_002685897.1| PREDICTED: protoporphyrinogen oxidase [Bos taurus].
Length = 477
Score = 606 bits (1562), Expect = e-173
Identities = 321/427 (75%), Positives = 342/427 (80%), Gaps = 8/427 (1%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASY+LSRAPCPPKVVLVEGSERLGGWIRS+RGPDGA+FELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYYLSRAPCPPKVVLVEGSERLGGWIRSVRGPDGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LPSG RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPSGIRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLR+LTTPRGKDPDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRDLTTPRGKDPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAGR PQ DSALIRQA+AERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGRGPQLDSALIRQAQAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
+AHLTSRGVSVL+GQPV GLSLQAEG WKVSL DSSLEADHIISA+PASVLSK
Sbjct: 241 HAHLTSRGVSVLQGQPVCGLSLQAEGRWKVSLEDSSLEADHIISAIPASVLSKLLPAEAT 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGSCMTQL--------L 1281
STI AVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILG + L
Sbjct: 301 PLARALSTITAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSL 360
Query: 1282 SLSRMEALLASE*LLCWEVPGYRH*KPEAVSYPXSCSXRRQRKQLPHS*V*GATSHCLXH 1461
R+ +L L E G V ++ + SHCL H
Sbjct: 361 PGLRLTVMLGGSWLQTLEARG-------CVLSQELLQQEAEKAAATQLGLNEPPSHCLVH 413
Query: 1462 LHRTVSP 1482
LH+ P
Sbjct: 414 LHKNSIP 420
Score = 120 bits (302), Expect = 2e-27
Identities = 66/101 (65%), Positives = 72/101 (71%), Gaps = 4/101 (3%)
Frame = +3
Query: 1215 IWAFGAILRRPSHP---GIVYDSVAFPEQDGSPSGLRVTVMLGGSWVQTLEARSCVLSXE 1385
+ FG ++ P GIVYDSVAFPEQDGS GLR+TVMLGGSW+QTLEAR CVLS E
Sbjct: 328 VQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSLPGLRLTVMLGGSWLQTLEARGCVLSQE 387
Query: 1386 LFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIPQYTLGHWQ 1505
L QEAEKA ATQLGL S L +N IPQYTLGHWQ
Sbjct: 388 LLQQEAEKAAATQLGLNEPPSHCLVHLHKNSIPQYTLGHWQ 428
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,606,510
Number of extensions: 1974379
Number of successful extensions: 6821
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6808
Number of HSP's successfully gapped: 4
Length of query: 506
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 399
Effective length of database: 14,140,958
Effective search space: 5642242242
Effective search space used: 5642242242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008289
(1520 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536137.2| PREDICTED: similar to Protoporphyrinogen oxidas... 589 e-168
>ref|XP_536137.2| PREDICTED: similar to Protoporphyrinogen oxidase (PPO) [Canis
familiaris].
Length = 477
Score = 589 bits (1519), Expect = e-168
Identities = 298/345 (86%), Positives = 310/345 (89%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAA YHLSRAPC PKVVLVEGSERLGGWIRS+RGP GAVFELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAAGYHLSRAPCAPKVVLVEGSERLGGWIRSVRGPGGAVFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGA GARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LPSG RGLF SP
Sbjct: 61 IRPAGAPGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPSGLRGLFRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELTTPRGKDPDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELS+
Sbjct: 121 PFSKPLFWAGLRELTTPRGKDPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSV 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQ+HRSVLLGLL+GAG SP+PDSALIRQARAERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQSHRSVLLGLLLGAGHSPRPDSALIRQARAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
N +LTSRGVSVLRGQPV GL L G WKVSLGD SLEADH+ISAVPASVLSK
Sbjct: 241 NTYLTSRGVSVLRGQPVCGLGLLPGGRWKVSLGDGSLEADHVISAVPASVLSKLLPAQAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILG 1260
S I AVSV VVNLQYRGARLPVQGFGHLVPSSEDP +LG
Sbjct: 301 PLAHALSAITAVSVVVVNLQYRGARLPVQGFGHLVPSSEDPGVLG 345
Score = 123 bits (308), Expect = 5e-28
Identities = 65/101 (64%), Positives = 75/101 (74%), Gaps = 4/101 (3%)
Frame = +3
Query: 1215 IWAFGAILRRPSHPG---IVYDSVAFPEQDGSPSGLRVTVMLGGSWVQTLEARSCVLSXE 1385
+ FG ++ PG IVYDSVAFPEQDGSP GLRVTVMLGGSW+QTLEAR +LS E
Sbjct: 328 VQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEARGGLLSRE 387
Query: 1386 LFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIPQYTLGHWQ 1505
LF Q+A++A ATQLGL+ S L +NCIPQYTLGHWQ
Sbjct: 388 LFQQQAQQAAATQLGLKEPPSHCLVHLHKNCIPQYTLGHWQ 428
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,236,056
Number of extensions: 2024603
Number of successful extensions: 6773
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6759
Number of HSP's successfully gapped: 2
Length of query: 506
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 399
Effective length of database: 15,307,552
Effective search space: 6107713248
Effective search space used: 6107713248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008289
(1520 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355135.1| PREDICTED: protoporphyrinogen oxidase [Sus s... 658 0.0
Alignment gi|XP_003355139.1| PREDICTED: protoporphyrinogen oxidase-like [... 657 0.0
>ref|XP_003355135.1| PREDICTED: protoporphyrinogen oxidase [Sus scrofa].
Length = 477
Score = 658 bits (1697), Expect = 0.0
Identities = 351/436 (80%), Positives = 363/436 (83%), Gaps = 17/436 (3%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP
Sbjct: 61 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSK
Sbjct: 241 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKLLPPEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGSC------------- 1266
STINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILG
Sbjct: 301 PLAHALSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSP 360
Query: 1267 ----MTQLLSLSRMEALLASE*LLCWEVPGYRH*KPEAVSYPXSCSXRRQRKQLPHS*V* 1434
+T +L S ++ L A +L E+ ++ +AV+ K+ P
Sbjct: 361 SGLRVTVMLGGSWLQTLEARSCVLSQEL--FQQEAEKAVATQLGL------KEPP----- 407
Query: 1435 GATSHCLXHLHRTVSP 1482
SHCL HLH+ P
Sbjct: 408 ---SHCLVHLHKNCIP 420
Score = 137 bits (346), Expect = 1e-32
Identities = 73/101 (72%), Positives = 79/101 (78%), Gaps = 4/101 (3%)
Frame = +3
Query: 1215 IWAFGAILRRPSHP---GIVYDSVAFPEQDGSPSGLRVTVMLGGSWVQTLEARSCVLSXE 1385
+ FG ++ P GIVYDSVAFPEQDGSPSGLRVTVMLGGSW+QTLEARSCVLS E
Sbjct: 328 VQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSPSGLRVTVMLGGSWLQTLEARSCVLSQE 387
Query: 1386 LFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIPQYTLGHWQ 1505
LF QEAEKAVATQLGL+ S L +NCIPQYTLGHWQ
Sbjct: 388 LFQQEAEKAVATQLGLKEPPSHCLVHLHKNCIPQYTLGHWQ 428
>ref|XP_003355139.1| PREDICTED: protoporphyrinogen oxidase-like [Sus scrofa].
Length = 477
Score = 657 bits (1694), Expect = 0.0
Identities = 350/436 (80%), Positives = 363/436 (83%), Gaps = 17/436 (3%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASYHLSRAPCPPKVVL+EGSERLGGWIRSIRGPDGAVFELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLLEGSERLGGWIRSIRGPDGAVFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP
Sbjct: 61 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSK
Sbjct: 241 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKLLPPEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGSC------------- 1266
STINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILG
Sbjct: 301 PLAHALSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSP 360
Query: 1267 ----MTQLLSLSRMEALLASE*LLCWEVPGYRH*KPEAVSYPXSCSXRRQRKQLPHS*V* 1434
+T +L S ++ L A +L E+ ++ +AV+ K+ P
Sbjct: 361 SGLRVTVMLGGSWLQTLEARSCVLSQEL--FQQEAEKAVATQLGL------KEPP----- 407
Query: 1435 GATSHCLXHLHRTVSP 1482
SHCL HLH+ P
Sbjct: 408 ---SHCLVHLHKNCIP 420
Score = 137 bits (346), Expect = 1e-32
Identities = 73/101 (72%), Positives = 79/101 (78%), Gaps = 4/101 (3%)
Frame = +3
Query: 1215 IWAFGAILRRPSHP---GIVYDSVAFPEQDGSPSGLRVTVMLGGSWVQTLEARSCVLSXE 1385
+ FG ++ P GIVYDSVAFPEQDGSPSGLRVTVMLGGSW+QTLEARSCVLS E
Sbjct: 328 VQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSPSGLRVTVMLGGSWLQTLEARSCVLSQE 387
Query: 1386 LFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIPQYTLGHWQ 1505
LF QEAEKAVATQLGL+ S L +NCIPQYTLGHWQ
Sbjct: 388 LFQQEAEKAVATQLGLKEPPSHCLVHLHKNCIPQYTLGHWQ 428
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,785,149
Number of extensions: 1279857
Number of successful extensions: 4535
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4522
Number of HSP's successfully gapped: 4
Length of query: 506
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 403
Effective length of database: 8,779,541
Effective search space: 3538155023
Effective search space used: 3538155023
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008289
(1520 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032937.1| protoporphyrinogen oxidase [Mus musculus]. 581 e-166
>ref|NP_032937.1| protoporphyrinogen oxidase [Mus musculus].
Length = 477
Score = 581 bits (1497), Expect = e-166
Identities = 307/422 (72%), Positives = 338/422 (80%), Gaps = 3/422 (0%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTV+VLGGGISGLAASYHL R P PPKV+LVEGS+RLGGWIRSIRG DGA+FELGPRG
Sbjct: 1 MGRTVIVLGGGISGLAASYHLIRGPSPPKVILVEGSKRLGGWIRSIRGSDGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGL+SEVLPVRGDHPA++NRFLYV G LHPLPSG RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLESEVLPVRGDHPAAQNRFLYVGGTLHPLPSGLRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLREL PRGK+PDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELLKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAG+SPQPDS+LIRQARAERWSQWSLRGGLE LPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGQSPQPDSSLIRQARAERWSQWSLRGGLEVLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
+ HL S+GV+VL GQPV GLSLQ EG WKVSLGDSSLEADHIISA+PAS LSK
Sbjct: 241 HNHLASKGVTVLSGQPVCGLSLQPEGRWKVSLGDSSLEADHIISAIPASELSKLLPAEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGSCMTQLLSLSRMEAL 1305
STI AVSVAVVNLQYRGA LPVQGFGHLVPSSEDP +LG + ++ +
Sbjct: 301 PLARILSTIKAVSVAVVNLQYRGACLPVQGFGHLVPSSEDPTVLG-IVYDSVAFPEQDGN 359
Query: 1306 LASE*LLCWEVPGYRH*KPEAVSYPXSCSXRRQRKQLPHS*V*G---ATSHCLXHLHRTV 1476
S + + GY K +A + S +Q+ Q + G SHCL HLH+
Sbjct: 360 PPSLRVTVM-LGGYWLQKLKAAGHQLSPELFQQQAQEAAATQLGLKEPPSHCLVHLHKNC 418
Query: 1477 SP 1482
P
Sbjct: 419 IP 420
Score = 112 bits (280), Expect = 8e-25
Identities = 60/105 (57%), Positives = 72/105 (68%), Gaps = 4/105 (3%)
Frame = +3
Query: 1203 ACPGIWAFGAILRRPSHP---GIVYDSVAFPEQDGSPSGLRVTVMLGGSWVQTLEARSCV 1373
AC + FG ++ P GIVYDSVAFPEQDG+P LRVTVMLGG W+Q L+A
Sbjct: 324 ACLPVQGFGHLVPSSEDPTVLGIVYDSVAFPEQDGNPPSLRVTVMLGGYWLQKLKAAGHQ 383
Query: 1374 LSXELFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIPQYTLGHWQ 1505
LS ELF Q+A++A ATQLGL+ S L +NCIPQYT+GHWQ
Sbjct: 384 LSPELFQQQAQEAAATQLGLKEPPSHCLVHLHKNCIPQYTIGHWQ 428
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,598,445
Number of extensions: 1646744
Number of successful extensions: 5326
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5299
Number of HSP's successfully gapped: 2
Length of query: 506
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 400
Effective length of database: 12,433,743
Effective search space: 4973497200
Effective search space used: 4973497200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008289
(1520 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116236.1| protoporphyrinogen oxidase [Homo sapiens]. 594 e-170
Alignment gi|NP_000300.1| protoporphyrinogen oxidase [Homo sapiens]. 594 e-170
>ref|NP_001116236.1| protoporphyrinogen oxidase [Homo sapiens].
Length = 477
Score = 594 bits (1531), Expect = e-170
Identities = 316/436 (72%), Positives = 345/436 (79%), Gaps = 17/436 (3%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVE SERLGGWIRS+RGP+GA+FELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LP+G RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELT PRGK+PDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAGR+PQPDSALIRQA AERWSQWSLRGGLE LPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
HLTSRGVSVLRGQPV GLSLQAEG WKVSL DSSLEADH+ISA+PASVLS+
Sbjct: 241 ETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGSC------------- 1266
S I AVSVAVVNLQY+GA LPVQGFGHLVPSSEDP +LG
Sbjct: 301 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSP 360
Query: 1267 ----MTQLLSLSRMEALLASE*LLCWEVPGYRH*KPEAVSYPXSCSXRRQRKQLPHS*V* 1434
+T +L S ++ L AS +L E+ ++ EA + K++P
Sbjct: 361 PGLRVTVMLGGSWLQTLEASGCVLSQEL--FQQRAQEAAATQLGL------KEMP----- 407
Query: 1435 GATSHCLXHLHRTVSP 1482
SHCL HLH+ P
Sbjct: 408 ---SHCLVHLHKNCIP 420
Score = 125 bits (315), Expect = 8e-29
Identities = 66/101 (65%), Positives = 74/101 (73%), Gaps = 4/101 (3%)
Frame = +3
Query: 1215 IWAFGAILRRPSHPG---IVYDSVAFPEQDGSPSGLRVTVMLGGSWVQTLEARSCVLSXE 1385
+ FG ++ PG IVYDSVAFPEQDGSP GLRVTVMLGGSW+QTLEA CVLS E
Sbjct: 328 VQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQE 387
Query: 1386 LFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIPQYTLGHWQ 1505
LF Q A++A ATQLGL+ S L +NCIPQYTLGHWQ
Sbjct: 388 LFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQ 428
>ref|NP_000300.1| protoporphyrinogen oxidase [Homo sapiens].
Length = 477
Score = 594 bits (1531), Expect = e-170
Identities = 316/436 (72%), Positives = 345/436 (79%), Gaps = 17/436 (3%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVE SERLGGWIRS+RGP+GA+FELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LP+G RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELT PRGK+PDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAGR+PQPDSALIRQA AERWSQWSLRGGLE LPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
HLTSRGVSVLRGQPV GLSLQAEG WKVSL DSSLEADH+ISA+PASVLS+
Sbjct: 241 ETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGSC------------- 1266
S I AVSVAVVNLQY+GA LPVQGFGHLVPSSEDP +LG
Sbjct: 301 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSP 360
Query: 1267 ----MTQLLSLSRMEALLASE*LLCWEVPGYRH*KPEAVSYPXSCSXRRQRKQLPHS*V* 1434
+T +L S ++ L AS +L E+ ++ EA + K++P
Sbjct: 361 PGLRVTVMLGGSWLQTLEASGCVLSQEL--FQQRAQEAAATQLGL------KEMP----- 407
Query: 1435 GATSHCLXHLHRTVSP 1482
SHCL HLH+ P
Sbjct: 408 ---SHCLVHLHKNCIP 420
Score = 125 bits (315), Expect = 8e-29
Identities = 66/101 (65%), Positives = 74/101 (73%), Gaps = 4/101 (3%)
Frame = +3
Query: 1215 IWAFGAILRRPSHPG---IVYDSVAFPEQDGSPSGLRVTVMLGGSWVQTLEARSCVLSXE 1385
+ FG ++ PG IVYDSVAFPEQDGSP GLRVTVMLGGSW+QTLEA CVLS E
Sbjct: 328 VQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQE 387
Query: 1386 LFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIPQYTLGHWQ 1505
LF Q A++A ATQLGL+ S L +NCIPQYTLGHWQ
Sbjct: 388 LFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQ 428
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,925,913
Number of extensions: 1981992
Number of successful extensions: 6751
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6738
Number of HSP's successfully gapped: 4
Length of query: 506
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 399
Effective length of database: 14,770,016
Effective search space: 5893236384
Effective search space used: 5893236384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008289
(1520 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 432 e-118
>Sscrofa_Chr04
|| Length = 143465943
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Minus
Query: 1 aatcttgggggcggaggccgcggactgaaaacactaggcctagcgaggggtgggagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97144994 aatcttgggggcggaggccgcggactgaaaacactaggcctagcgaggggtgggagagaa 97144935
Query: 61 aacgcgcttcttagccctggcggccagtcggtgcccccagccctgtgctggcagatagcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97144934 aacgcgcttcttagccctggcggccagtcggtgcccccagccctgtgctggcagatagcg 97144875
Query: 121 tgggtgtggcccttatccacttccccgcggagccggctgggtgatgtcttgagacctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97144874 tgggtgtggcccttatccacttccccgcggagccggctgggtgatgtcttgagacctcta 97144815
Query: 181 cctcctcctcccctcatttttcttgtccctctcgtggg 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 97144814 cctcctcctcccctcatttttcttgtccctctcgtggg 97144777
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 838 gcaggacggagtccacagccagactcagcacttattcgccaggctcgggctgaacgctgg 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97143153 gcaggacggagtccacagccagactcagcacttattcgccaggctcgggctgaacgctgg 97143094
Query: 898 agccagtggtcactccgtggaggactggagacattgccccaagcccttaatgcccacctg 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97143093 agccagtggtcactccgtggaggactggagacattgccccaagcccttaatgcccacctg 97143034
Query: 958 actagtaggggtgtcagtgttctcagaggccagccagtctctgggctcagcctccaggca 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97143033 actagtaggggtgtcagtgttctcagaggccagccagtctctgggctcagcctccaggca 97142974
Query: 1018 gaagggtgctggaaggt 1034
|||||||||||||||||
Sbjct: 97142973 gaagggtgctggaaggt 97142957
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 695 aggtggcgtctctagccatggacagtctctgccgtggagtgtttgcaggcaacagtcgtg 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97143405 aggtggcgtctctagccatggacagtctctgccgtggagtgtttgcaggcaacagtcgtg 97143346
Query: 755 agctcagcatcaggtcctgctttcccagcctcttccaggctgaacaaacccatcgttccg 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97143345 agctcagcatcaggtcctgctttcccagcctcttccaggctgaacaaacccatcgttccg 97143286
Query: 815 tattactggggctgctgatgggggcagg 842
||||||||||||||||||||||||||||
Sbjct: 97143285 tattactggggctgctgatgggggcagg 97143258
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 561 cagggggctattctgccgttcacctcccttctccaaacctctgttttgggctgggctgag 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97143813 cagggggctattctgccgttcacctcccttctccaaacctctgttttgggctgggctgag 97143754
Query: 621 ggagttgaccacgcctcggggcaaagaccctgatgagagtgtgcacagttttgcccagcg 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97143753 ggagttgaccacgcctcggggcaaagaccctgatgagagtgtgcacagttttgcccagcg 97143694
Query: 681 tcgccttggtcctgaggt 698
||||||||||||||||||
Sbjct: 97143693 tcgccttggtcctgaggt 97143676
Score = 268 bits (135), Expect = 8e-69
Identities = 138/139 (99%)
Strand = Plus / Minus
Query: 311 aggtggtcttggtggagggcagcgagcgcctaggcggctggatccgctcaatacgagggc 370
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97144384 aggtggtcttgttggagggcagcgagcgcctaggcggctggatccgctcaatacgagggc 97144325
Query: 371 cagatggtgctgtttttgaacttggacctcgaggaattcggcctgctggagccctgggag 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97144324 cagatggtgctgtttttgaacttggacctcgaggaattcggcctgctggagccctgggag 97144265
Query: 431 cccggaccctgctcatggt 449
|||||||||||||||||||
Sbjct: 97144264 cccggaccctgctcatggt 97144246
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1091 cagtgctcagcaagctgctccctcctgaggctgcacctctggctcatgccctgagtacca 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97142276 cagtgctcagcaagctgctccctcctgaggctgcacctctggctcatgccctgagtacca 97142217
Query: 1151 tcaatgctgtgtctgtggctgtggtgaacctgcagtaccgaggagctcgtctgcctgtcc 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97142216 tcaatgctgtgtctgtggctgtggtgaacctgcagtaccgaggagctcgtctgcctgtcc 97142157
Query: 1211 agg 1213
|||
Sbjct: 97142156 agg 97142154
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 447 ggtttctgagcttggtttggactcagaagtgttacctgtccggggagaccatccagcttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97144113 ggtttctgagcttggtttggactcagaagtgttacctgtccggggagaccatccagcttc 97144054
Query: 507 caagaacaggttcctgtatgtagatggtgccctgcatcccctgccctctggcttcagg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97144053 caagaacaggttcctgtatgtagatggtgccctgcatcccctgccctctggcttcagg 97143996
Score = 220 bits (111), Expect = 2e-54
Identities = 140/148 (94%), Gaps = 2/148 (1%)
Strand = Plus / Minus
Query: 1323 gttatgctgggaggttcctgggtacagacactagaagccagaagctgtgtcttatcccna 1382
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 97141862 gttatgctgggaggttcctggttacagacactagaagccagaagctgtgtcttatcccag 97141803
Query: 1383 gagctgttccnacaggaggcagagaaagcagttgccacacagttaggttt-aaggagcca 1441
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 97141802 gagctgttccaacaggaggcagagaaagcagttgccacacagttaggtttaaaggagcca 97141743
Query: 1442 cc-agtcactgcttggntcatctacaca 1468
|| ||||||||||||| ||||||||||
Sbjct: 97141742 ccaagtcactgcttggtccatctacaca 97141715
Score = 214 bits (108), Expect = 1e-52
Identities = 115/116 (99%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 1210 cagggatttgggcatttggtgccatcctcagaagacccagtcatcctggga-tcgtgtat 1268
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 97142080 cagggatttgggcatttggtgccatcctcagaagacccagtcatcctgggaatcgtgtat 97142021
Query: 1269 gactcagttgctttccctgagcaggatggaagcccttctggcctcagagtgactgt 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97142020 gactcagttgctttccctgagcaggatggaagcccttctggcctcagagtgactgt 97141965
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 217 ggcttccccatgggccggaccgtggtcgtgctgggtggaggcatcagcggcctggccgcc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97144610 ggcttccccatgggccggaccgtggtcgtgctgggtggaggcatcagcggcctggccgcc 97144551
Query: 277 agttaccatctgagccgggccccttgtccccccaaggtg 315
|||||||||||||||||||||||||||||||||||||||
Sbjct: 97144550 agttaccatctgagccgggccccttgtccccccaaggtg 97144512
Score = 125 bits (63), Expect = 8e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 1031 aggtgtctctaggggacagcagcctggaggctgaccacattattagtgctgttccagctt 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97142520 aggtgtctctaggggacagcagcctggaggctgaccacattattagtgctgttccagctt 97142461
Query: 1091 cag 1093
|||
Sbjct: 97142460 cag 97142458
Score = 81.8 bits (41), Expect = 1e-12
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 1467 cagaactgtatcccccagtatacattaggccactggcaaaa 1507
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 97141570 cagaactgtatcccccagtatacattaggccactggcaaaa 97141530
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,526,614
Number of extensions: 1764
Number of successful extensions: 1764
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1762
Number of HSP's successfully gapped: 12
Length of query: 1520
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1499
Effective length of database: 2,808,413,156
Effective search space: 4209811320844
Effective search space used: 4209811320844
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)