Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008291
(1044 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095660.1| regulating synaptic membrane exocytosis 2 [B... 387 e-108
Alignment gi|XP_002690061.1| PREDICTED: regulating synaptic membrane exoc... 321 8e-88
Alignment gi|XP_613769.3| PREDICTED: regulating synaptic membrane exocyto... 321 8e-88
Alignment gi|NP_001192796.1| regulating synaptic membrane exocytosis prot... 290 1e-78
Alignment gi|XP_002686501.1| PREDICTED: regulating synaptic membrane exoc... 290 1e-78
Alignment gi|XP_002692374.1| PREDICTED: regulating synaptic membrane exoc... 270 1e-72
Alignment gi|XP_588261.3| PREDICTED: regulating synaptic membrane exocyto... 270 1e-72
Alignment gi|XP_002693928.1| PREDICTED: phosphoinositide-3-kinase, class ... 60 2e-09
Alignment gi|XP_001789145.1| PREDICTED: phosphoinositide-3-kinase, class ... 60 2e-09
Alignment gi|XP_002693185.1| PREDICTED: synaptotagmin IX [Bos taurus]. 54 3e-07
>ref|NP_001095660.1| regulating synaptic membrane exocytosis 2 [Bos taurus].
Length = 283
Score = 387 bits (995), Expect = e-108
Identities = 198/204 (97%), Positives = 198/204 (97%)
Frame = +3
Query: 432 YFPCMNSLXXXXXAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGN 611
YFPCMNSL GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGN
Sbjct: 35 YFPCMNSLEEEE-TGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGN 93
Query: 612 LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG 791
LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG
Sbjct: 94 LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG 153
Query: 792 LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII 971
LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII
Sbjct: 154 LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII 213
Query: 972 VWGDYGRMDHKSFMGVAQILLDEL 1043
VWGDYGRMDHKSFMGVAQILLDEL
Sbjct: 214 VWGDYGRMDHKSFMGVAQILLDEL 237
>ref|XP_002690061.1| PREDICTED: regulating synaptic membrane exocytosis protein 1-like,
partial [Bos taurus].
Length = 1125
Score = 321 bits (822), Expect = 8e-88
Identities = 159/191 (83%), Positives = 175/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQ
Sbjct: 890 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQ 948
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 949 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 1008
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 1009 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 1068
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 1069 MGVAQILLEEL 1079
>ref|XP_613769.3| PREDICTED: regulating synaptic membrane exocytosis protein 1-like
[Bos taurus].
Length = 1568
Score = 321 bits (822), Expect = 8e-88
Identities = 159/191 (83%), Positives = 175/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQ
Sbjct: 1333 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQ 1391
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 1392 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 1451
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 1452 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 1511
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 1512 MGVAQILLEEL 1522
>ref|NP_001192796.1| regulating synaptic membrane exocytosis protein 3 [Bos taurus].
Length = 308
Score = 290 bits (743), Expect = 1e-78
Identities = 139/188 (73%), Positives = 163/188 (86%)
Frame = +3
Query: 480 KKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSD 659
KKLRS ++RSTETG+AVEMR+ + RQ SRESTDGS NS SS+G IFP RL ++SQFSD
Sbjct: 77 KKLRSNIRRSTETGVAVEMRSRVPRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSD 136
Query: 660 FLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVK 839
FLDGLGPAQ+VGRQTLATP MGD+ + +MD+ GQLEVE+I ARGL KPGSK+LPA Y+K
Sbjct: 137 FLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIK 196
Query: 840 VYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGV 1019
VYLL+NG C+AKKKTKVA+KT +PLYQQ L F+E PQGKVLQ+IVWGDYGRMDHK FMG+
Sbjct: 197 VYLLENGACLAKKKTKVAKKTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGM 256
Query: 1020 AQILLDEL 1043
AQI+LDEL
Sbjct: 257 AQIMLDEL 264
>ref|XP_002686501.1| PREDICTED: regulating synaptic membrane exocytosis protein 3-like
[Bos taurus].
Length = 308
Score = 290 bits (743), Expect = 1e-78
Identities = 139/188 (73%), Positives = 163/188 (86%)
Frame = +3
Query: 480 KKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSD 659
KKLRS ++RSTETG+AVEMR+ + RQ SRESTDGS NS SS+G IFP RL ++SQFSD
Sbjct: 77 KKLRSNIRRSTETGVAVEMRSRVPRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSD 136
Query: 660 FLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVK 839
FLDGLGPAQ+VGRQTLATP MGD+ + +MD+ GQLEVE+I ARGL KPGSK+LPA Y+K
Sbjct: 137 FLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIK 196
Query: 840 VYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGV 1019
VYLL+NG C+AKKKTKVA+KT +PLYQQ L F+E PQGKVLQ+IVWGDYGRMDHK FMG+
Sbjct: 197 VYLLENGACLAKKKTKVAKKTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGM 256
Query: 1020 AQILLDEL 1043
AQI+LDEL
Sbjct: 257 AQIMLDEL 264
>ref|XP_002692374.1| PREDICTED: regulating synaptic membrane exocytosis 4-like [Bos
taurus].
Length = 284
Score = 270 bits (691), Expect = 1e-72
Identities = 133/205 (64%), Positives = 164/205 (80%), Gaps = 3/205 (1%)
Frame = +3
Query: 438 PCMN---SLXXXXXAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEG 608
PC++ S ++L+ +QRSTETGLAVEM + RQAS ES + SMNSY SEG
Sbjct: 34 PCLSPHLSRPLCPEGDSRRLKGAIQRSTETGLAVEMPSRTLRQASHESIEDSMNSYGSEG 93
Query: 609 NLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRAR 788
NL + GV LASD+QFSDFL +GPAQ VGRQTLAT MGD+++G+ ++ GQLEV+II+AR
Sbjct: 94 NLNYGGVCLASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQLEVDIIQAR 153
Query: 789 GLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQI 968
GL KPGSKTLPA Y+K YLL+NG+CIAKKKTKVARK+L+PLY Q+L F ESPQGKVLQ+
Sbjct: 154 GLTAKPGSKTLPAAYIKAYLLENGICIAKKKTKVARKSLDPLYNQVLLFPESPQGKVLQV 213
Query: 969 IVWGDYGRMDHKSFMGVAQILLDEL 1043
IVWG+YGRM+ K FMGVA++LL+EL
Sbjct: 214 IVWGNYGRMERKQFMGVARVLLEEL 238
>ref|XP_588261.3| PREDICTED: regulating synaptic membrane exocytosis 4-like [Bos
taurus].
Length = 284
Score = 270 bits (691), Expect = 1e-72
Identities = 133/205 (64%), Positives = 164/205 (80%), Gaps = 3/205 (1%)
Frame = +3
Query: 438 PCMN---SLXXXXXAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEG 608
PC++ S ++L+ +QRSTETGLAVEM + RQAS ES + SMNSY SEG
Sbjct: 34 PCLSPHLSRPLCPEGDSRRLKGAIQRSTETGLAVEMPSRTLRQASHESIEDSMNSYGSEG 93
Query: 609 NLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRAR 788
NL + GV LASD+QFSDFL +GPAQ VGRQTLAT MGD+++G+ ++ GQLEV+II+AR
Sbjct: 94 NLNYGGVCLASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQLEVDIIQAR 153
Query: 789 GLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQI 968
GL KPGSKTLPA Y+K YLL+NG+CIAKKKTKVARK+L+PLY Q+L F ESPQGKVLQ+
Sbjct: 154 GLTAKPGSKTLPAAYIKAYLLENGICIAKKKTKVARKSLDPLYNQVLLFPESPQGKVLQV 213
Query: 969 IVWGDYGRMDHKSFMGVAQILLDEL 1043
IVWG+YGRM+ K FMGVA++LL+EL
Sbjct: 214 IVWGNYGRMERKQFMGVARVLLEEL 238
>ref|XP_002693928.1| PREDICTED: phosphoinositide-3-kinase, class 2, beta polypeptide [Bos
taurus].
Length = 1634
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Frame = +3
Query: 723 GDIQVGMMDKKGQLEVEIIRARGL-VVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARK 899
G++++ + K +L + ++ RGL +++ G+ P PYVK+YLL + KKKTKVARK
Sbjct: 1506 GEVKLSISYKNNKLFIMVMHIRGLQLLQDGND--PDPYVKIYLLPDPQKTTKKKTKVARK 1563
Query: 900 TLEPLYQQLLSFEESPQG----KVLQIIVWGDYGRMDHKSFMGVAQILLDEL 1043
T P Y ++L ++ P+G + LQ+ V + G ++ +G I L EL
Sbjct: 1564 TCNPTYNEMLVYDGIPKGDLQQRELQLSVLSEQGFWEN-VLLGEVHIRLREL 1614
>ref|XP_001789145.1| PREDICTED: phosphoinositide-3-kinase, class 2 beta polypeptide [Bos
taurus].
Length = 1617
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Frame = +3
Query: 723 GDIQVGMMDKKGQLEVEIIRARGL-VVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARK 899
G++++ + K +L + ++ RGL +++ G+ P PYVK+YLL + KKKTKVARK
Sbjct: 1489 GEVKLSISYKNNKLFIMVMHIRGLQLLQDGND--PDPYVKIYLLPDPQKTTKKKTKVARK 1546
Query: 900 TLEPLYQQLLSFEESPQG----KVLQIIVWGDYGRMDHKSFMGVAQILLDEL 1043
T P Y ++L ++ P+G + LQ+ V + G ++ +G I L EL
Sbjct: 1547 TCNPTYNEMLVYDGIPKGDLQQRELQLSVLSEQGFWEN-VLLGEVHIRLREL 1597
>ref|XP_002693185.1| PREDICTED: synaptotagmin IX [Bos taurus].
Length = 581
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Frame = +3
Query: 756 GQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSF 935
G+L + II+AR L + PYVKV L+ +G + K+KT R TL P+Y + + F
Sbjct: 367 GRLTITIIKARNLKAMDITGASD-PYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVF 425
Query: 936 EESPQG--KVLQIIVWGDYGRMDHKSFMGVAQI 1028
+ P+ ++ I DY R+ H +GV Q+
Sbjct: 426 DVPPENIDQIHLSIAVMDYDRVGHNEIIGVCQV 458
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,467,734
Number of extensions: 1285364
Number of successful extensions: 6492
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 6461
Number of HSP's successfully gapped: 23
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008291
(1044 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859074.1| PREDICTED: similar to regulating synaptic membr... 377 e-105
Alignment gi|XP_859485.1| PREDICTED: similar to regulating synaptic membr... 377 e-104
Alignment gi|XP_859448.1| PREDICTED: similar to Regulating synaptic membr... 377 e-104
Alignment gi|XP_859414.1| PREDICTED: similar to regulating synaptic membr... 377 e-104
Alignment gi|XP_849649.1| PREDICTED: similar to regulating synaptic membr... 377 e-104
Alignment gi|XP_532300.2| PREDICTED: similar to regulating synaptic membr... 377 e-104
Alignment gi|XP_859268.1| PREDICTED: similar to Regulating synaptic membr... 377 e-104
Alignment gi|XP_859040.1| PREDICTED: similar to regulating synaptic membr... 377 e-104
Alignment gi|XP_859308.1| PREDICTED: similar to Regulating synaptic membr... 375 e-104
Alignment gi|XP_859226.1| PREDICTED: similar to Regulating synaptic membr... 375 e-104
>ref|XP_859074.1| PREDICTED: similar to regulating synaptic membrane exocytosis 2
isoform 2 isoform 4 [Canis familiaris].
Length = 299
Score = 377 bits (969), Expect = e-105
Identities = 199/234 (85%), Positives = 199/234 (85%), Gaps = 30/234 (12%)
Frame = +3
Query: 432 YFPCMNSLXXXXX------------------------------AGGKKLRSTVQRSTETG 521
YFPCMNSL AGGKKLRSTVQRSTETG
Sbjct: 20 YFPCMNSLEEDEGGEASPGIESWDQVPRRAPGMEPVLEQMDLEAGGKKLRSTVQRSTETG 79
Query: 522 LAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQ 701
LAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQ
Sbjct: 80 LAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQ 139
Query: 702 TLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKK 881
TLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKK
Sbjct: 140 TLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKK 199
Query: 882 TKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDEL 1043
TKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDEL
Sbjct: 200 TKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDEL 253
>ref|XP_859485.1| PREDICTED: similar to regulating synaptic membrane exocytosis 2
isoform 13 [Canis familiaris].
Length = 1163
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 927 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 986
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 987 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1046
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1047 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1106
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1107 MGVAQILLDEL 1117
>ref|XP_859448.1| PREDICTED: similar to Regulating synaptic membrane exocytosis protein
2 (Rab3-interacting molecule 2) (RIM 2) isoform 12 [Canis
familiaris].
Length = 1188
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 952 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 1011
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 1012 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1071
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1072 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1131
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1132 MGVAQILLDEL 1142
>ref|XP_859414.1| PREDICTED: similar to regulating synaptic membrane exocytosis 2
isoform 1 isoform 11 [Canis familiaris].
Length = 1527
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 1291 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 1350
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 1351 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1410
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1411 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1470
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1471 MGVAQILLDEL 1481
>ref|XP_849649.1| PREDICTED: similar to regulating synaptic membrane exocytosis 2
isoform 2 [Canis familiaris].
Length = 1532
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 1296 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 1355
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 1356 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1415
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1416 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1475
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1476 MGVAQILLDEL 1486
>ref|XP_532300.2| PREDICTED: similar to regulating synaptic membrane exocytosis 2
isoform 1 isoform 1 [Canis familiaris].
Length = 1324
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 1088 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 1147
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 1148 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1207
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1208 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1267
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1268 MGVAQILLDEL 1278
>ref|XP_859268.1| PREDICTED: similar to Regulating synaptic membrane exocytosis protein
2 (Rab3-interacting molecule 2) (RIM 2) isoform 9 [Canis
familiaris].
Length = 1420
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 1184 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 1243
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 1244 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1303
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1304 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1363
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1364 MGVAQILLDEL 1374
>ref|XP_859040.1| PREDICTED: similar to regulating synaptic membrane exocytosis 2
isoform 1 isoform 3 [Canis familiaris].
Length = 1339
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 1103 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 1162
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 1163 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1222
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1223 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1282
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1283 MGVAQILLDEL 1293
>ref|XP_859308.1| PREDICTED: similar to Regulating synaptic membrane exocytosis protein
2 (Rab3-interacting molecule 2) (RIM 2) isoform 10 [Canis
familiaris].
Length = 1332
Score = 375 bits (963), Expect = e-104
Identities = 190/190 (100%), Positives = 190/190 (100%)
Frame = +3
Query: 474 GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF 653
GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF
Sbjct: 1097 GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF 1156
Query: 654 SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY 833
SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY
Sbjct: 1157 SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY 1216
Query: 834 VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFM 1013
VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFM
Sbjct: 1217 VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFM 1276
Query: 1014 GVAQILLDEL 1043
GVAQILLDEL
Sbjct: 1277 GVAQILLDEL 1286
>ref|XP_859226.1| PREDICTED: similar to Regulating synaptic membrane exocytosis protein
2 (Rab3-interacting molecule 2) (RIM 2) isoform 8 [Canis
familiaris].
Length = 1354
Score = 375 bits (963), Expect = e-104
Identities = 190/190 (100%), Positives = 190/190 (100%)
Frame = +3
Query: 474 GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF 653
GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF
Sbjct: 1119 GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF 1178
Query: 654 SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY 833
SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY
Sbjct: 1179 SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY 1238
Query: 834 VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFM 1013
VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFM
Sbjct: 1239 VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFM 1298
Query: 1014 GVAQILLDEL 1043
GVAQILLDEL
Sbjct: 1299 GVAQILLDEL 1308
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,523,559
Number of extensions: 1335792
Number of successful extensions: 6494
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 6422
Number of HSP's successfully gapped: 28
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008291
(1044 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355046.1| PREDICTED: regulating synaptic membrane exoc... 393 e-110
Alignment gi|XP_003353291.1| PREDICTED: regulating synaptic membrane exoc... 295 4e-80
Alignment gi|XP_003125577.2| PREDICTED: regulating synaptic membrane exoc... 285 2e-77
Alignment gi|XP_003128162.2| PREDICTED: regulating synaptic membrane exoc... 62 5e-10
Alignment gi|XP_003357537.1| PREDICTED: protein piccolo-like, partial [Su... 61 9e-10
Alignment gi|XP_003357435.1| PREDICTED: phosphatidylinositol-4-phosphate ... 60 2e-09
Alignment gi|XP_003129458.1| PREDICTED: synaptotagmin-9 [Sus scrofa]. 53 3e-07
Alignment gi|XP_001926742.3| PREDICTED: synaptotagmin-6 isoform 2 [Sus sc... 52 5e-07
Alignment gi|XP_003135282.2| PREDICTED: synaptotagmin-like protein 4-like... 51 9e-07
Alignment gi|XP_001924452.2| PREDICTED: synaptotagmin-like protein 4 [Sus... 51 9e-07
>ref|XP_003355046.1| PREDICTED: regulating synaptic membrane exocytosis protein 2-like
[Sus scrofa].
Length = 284
Score = 393 bits (1010), Expect = e-110
Identities = 199/204 (97%), Positives = 199/204 (97%)
Frame = +3
Query: 432 YFPCMNSLXXXXXAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGN 611
YFPCMNSL AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGN
Sbjct: 35 YFPCMNSLEEEEEAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGN 94
Query: 612 LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG 791
LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG
Sbjct: 95 LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG 154
Query: 792 LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII 971
LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII
Sbjct: 155 LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII 214
Query: 972 VWGDYGRMDHKSFMGVAQILLDEL 1043
VWGDYGRMDHKSFMGVAQILLDEL
Sbjct: 215 VWGDYGRMDHKSFMGVAQILLDEL 238
>ref|XP_003353291.1| PREDICTED: regulating synaptic membrane exocytosis protein 1 [Sus
scrofa].
Length = 219
Score = 295 bits (754), Expect = 4e-80
Identities = 146/174 (83%), Positives = 159/174 (91%)
Frame = +3
Query: 522 LAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQ 701
+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQFSDFLDGLGPAQLVGRQ
Sbjct: 1 MAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQFSDFLDGLGPAQLVGRQ 59
Query: 702 TLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKK 881
TLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAPYVKVYLL+NG CIAKKK
Sbjct: 60 TLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK 119
Query: 882 TKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDEL 1043
T++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK FMGVAQILL+EL
Sbjct: 120 TRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 173
>ref|XP_003125577.2| PREDICTED: regulating synaptic membrane exocytosis protein 2-like
[Sus scrofa].
Length = 340
Score = 285 bits (730), Expect = 2e-77
Identities = 144/144 (100%), Positives = 144/144 (100%)
Frame = +3
Query: 612 LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG 791
LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG
Sbjct: 151 LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG 210
Query: 792 LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII 971
LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII
Sbjct: 211 LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII 270
Query: 972 VWGDYGRMDHKSFMGVAQILLDEL 1043
VWGDYGRMDHKSFMGVAQILLDEL
Sbjct: 271 VWGDYGRMDHKSFMGVAQILLDEL 294
>ref|XP_003128162.2| PREDICTED: regulating synaptic membrane exocytosis protein 3-like,
partial [Sus scrofa].
Length = 171
Score = 62.0 bits (149), Expect = 5e-10
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +3
Query: 615 IFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAM 722
IFP RL ++SQFSDFLDGLGPAQ+VGRQTLATP M
Sbjct: 2 IFPTPRLGAESQFSDFLDGLGPAQIVGRQTLATPPM 37
Score = 53.5 bits (127), Expect = 2e-07
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +3
Query: 966 IIVWGDYGRMDHKSFMGVAQILLDEL 1043
+IVWGDYGRMDHK FMG+AQI+LDEL
Sbjct: 42 VIVWGDYGRMDHKCFMGMAQIMLDEL 67
>ref|XP_003357537.1| PREDICTED: protein piccolo-like, partial [Sus scrofa].
Length = 4040
Score = 61.2 bits (147), Expect = 9e-10
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 15/176 (8%)
Frame = +3
Query: 561 SRESTDGSMNSYSSEGNL-------IFPGVRLASDSQFS-DFLDGLGPAQLVGRQTLATP 716
S S+ GS S SEG+ +FP R+ Q + + G + + T
Sbjct: 3845 SSGSSFGSGYSVDSEGSSSTAGETNVFPIPRIGKMGQNGQEPIKQPGVGAGLADTEVKTQ 3904
Query: 717 AMGDIQVGM---MDKKG-QLEVEIIRARGLVVKPGSKT-LPAPYVKVYLLDNGVC--IAK 875
MG+I++ + M G QL VEI++ R + K S LP YVK+Y+++ + K
Sbjct: 3905 VMGEIKIALKKEMKTDGEQLIVEILQCRNITYKFKSPDHLPDLYVKIYVMNISTQKKVIK 3964
Query: 876 KKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDEL 1043
KKT+V R EP + + F SP G LQI+++ + G+ K+ +G A I LD++
Sbjct: 3965 KKTRVCRHDREPSFNETFRFSLSPAGHSLQILLFSNGGKFMKKTLIGEACIWLDKV 4020
>ref|XP_003357435.1| PREDICTED: phosphatidylinositol-4-phosphate 3-kinase C2
domain-containing subunit beta-like [Sus scrofa].
Length = 821
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Frame = +3
Query: 723 GDIQVGMMDKKGQLEVEIIRARGL-VVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARK 899
G++++ + K +L + ++ RGL +++ G+ P PYVK+YLL + KKKTKVARK
Sbjct: 693 GEVKLSISYKNNKLFIMVMHIRGLQLLQDGND--PDPYVKIYLLPDPQKTTKKKTKVARK 750
Query: 900 TLEPLYQQLLSFEESPQG----KVLQIIVWGDYGRMDHKSFMGVAQILLDEL 1043
T P Y ++L ++ P+G + LQ+ V + G ++ +G I L EL
Sbjct: 751 TCNPTYNEMLVYDGIPKGDLQQRELQLSVLSEQGFWEN-VLLGEVHIRLREL 801
>ref|XP_003129458.1| PREDICTED: synaptotagmin-9 [Sus scrofa].
Length = 593
Score = 52.8 bits (125), Expect = 3e-07
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Frame = +3
Query: 756 GQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSF 935
G+L + +I+AR L + PYVKV L+ G + K+KT R TL P+Y + + F
Sbjct: 367 GRLTITVIKARNLKAMDITGASD-PYVKVSLMCEGRRLKKRKTSTKRNTLNPVYNEAIVF 425
Query: 936 EESPQG--KVLQIIVWGDYGRMDHKSFMGVAQI 1028
+ P+ ++ I DY R+ H +GV Q+
Sbjct: 426 DVPPENIDQIHLSIAVMDYDRVGHNEIIGVCQV 458
>ref|XP_001926742.3| PREDICTED: synaptotagmin-6 isoform 2 [Sus scrofa].
Length = 509
Score = 52.0 bits (123), Expect = 5e-07
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Frame = +3
Query: 720 MGDIQVGM--MDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVA 893
+G+I + + G+L + +I+ R L + PYVKV LL +G + KKKT +
Sbjct: 361 LGEIMFSLCYLPTAGRLTLTVIKCRNLKAMDITG-YSDPYVKVSLLCDGRRLKKKKTTIK 419
Query: 894 RKTLEPLYQQLLSFEESPQG--KVLQIIVWGDYGRMDHKSFMGVAQI 1028
+ TL P+Y + + F+ P+ +V +I DY R+ H +GV ++
Sbjct: 420 KNTLNPVYNEAIIFDIPPENMDQVSLLISVMDYDRVGHNEIIGVCRV 466
>ref|XP_003135282.2| PREDICTED: synaptotagmin-like protein 4-like [Sus scrofa].
Length = 594
Score = 51.2 bits (121), Expect = 9e-07
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Frame = +3
Query: 762 LEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFE- 938
L + + + L +K PYVK YLL + K+KT + R T+ PLY ++L++E
Sbjct: 426 LVIHVKECQQLAYADEAKKHSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDEILTYEI 485
Query: 939 -ESP-QGKVLQIIVWGDYGRMDHKSFMGVAQILLD 1037
ES + L+ VW +GR +F+G A++ +D
Sbjct: 486 PESVLSQRTLKFSVW-HHGRFGRNTFLGEAEVQMD 519
>ref|XP_001924452.2| PREDICTED: synaptotagmin-like protein 4 [Sus scrofa].
Length = 661
Score = 51.2 bits (121), Expect = 9e-07
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Frame = +3
Query: 762 LEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFE- 938
L + + + L +K PYVK YLL + K+KT + R T+ PLY ++L++E
Sbjct: 373 LVIHVKECQQLAYADEAKKHSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDEILTYEI 432
Query: 939 -ESP-QGKVLQIIVWGDYGRMDHKSFMGVAQILLD 1037
ES + L+ VW +GR +F+G A++ +D
Sbjct: 433 PESVLSQRTLKFSVW-HHGRFGRNTFLGEAEVQMD 466
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,153,559
Number of extensions: 833742
Number of successful extensions: 4211
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4196
Number of HSP's successfully gapped: 16
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008291
(1044 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444501.1| regulating synaptic membrane exocytosis protein... 374 e-104
Alignment gi|NP_444500.1| regulating synaptic membrane exocytosis protein... 319 3e-87
Alignment gi|NP_001012643.1| regulating synaptic membrane exocytosis prot... 319 3e-87
Alignment gi|NP_001012642.1| regulating synaptic membrane exocytosis prot... 319 3e-87
Alignment gi|NP_001012641.1| regulating synaptic membrane exocytosis prot... 319 3e-87
Alignment gi|NP_898839.2| regulating synaptic membrane exocytosis protein... 319 3e-87
Alignment gi|NP_891559.1| regulating synaptic membrane exocytosis protein... 289 2e-78
Alignment gi|NP_898844.1| regulating synaptic membrane exocytosis protein... 286 1e-77
Alignment gi|NP_036125.4| protein piccolo isoform 1 [Mus musculus]. 61 1e-09
Alignment gi|NP_001092746.2| phosphoinositide-3-kinase, class 2 beta poly... 59 8e-09
>ref|NP_444501.1| regulating synaptic membrane exocytosis protein 2 [Mus musculus].
Length = 1530
Score = 374 bits (960), Expect = e-104
Identities = 189/190 (99%), Positives = 190/190 (100%)
Frame = +3
Query: 474 GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF 653
GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF
Sbjct: 1295 GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF 1354
Query: 654 SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY 833
SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY
Sbjct: 1355 SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY 1414
Query: 834 VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFM 1013
VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQG+VLQIIVWGDYGRMDHKSFM
Sbjct: 1415 VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGRVLQIIVWGDYGRMDHKSFM 1474
Query: 1014 GVAQILLDEL 1043
GVAQILLDEL
Sbjct: 1475 GVAQILLDEL 1484
>ref|NP_444500.1| regulating synaptic membrane exocytosis protein 1 isoform 1 [Mus
musculus].
Length = 1463
Score = 319 bits (817), Expect = 3e-87
Identities = 158/191 (82%), Positives = 174/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVR+ DSQ
Sbjct: 1228 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQ 1286
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 1287 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 1346
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 1347 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 1406
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 1407 MGVAQILLEEL 1417
>ref|NP_001012643.1| regulating synaptic membrane exocytosis protein 1 isoform 5 [Mus
musculus].
Length = 1299
Score = 319 bits (817), Expect = 3e-87
Identities = 158/191 (82%), Positives = 174/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVR+ DSQ
Sbjct: 1064 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQ 1122
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 1123 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 1182
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 1183 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 1242
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 1243 MGVAQILLEEL 1253
>ref|NP_001012642.1| regulating synaptic membrane exocytosis protein 1 isoform 4 [Mus
musculus].
Length = 1350
Score = 319 bits (817), Expect = 3e-87
Identities = 158/191 (82%), Positives = 174/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVR+ DSQ
Sbjct: 1115 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQ 1173
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 1174 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 1233
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 1234 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 1293
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 1294 MGVAQILLEEL 1304
>ref|NP_001012641.1| regulating synaptic membrane exocytosis protein 1 isoform 3 [Mus
musculus].
Length = 1374
Score = 319 bits (817), Expect = 3e-87
Identities = 158/191 (82%), Positives = 174/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVR+ DSQ
Sbjct: 1139 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQ 1197
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 1198 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 1257
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 1258 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 1317
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 1318 MGVAQILLEEL 1328
>ref|NP_898839.2| regulating synaptic membrane exocytosis protein 1 isoform 2 [Mus
musculus].
Length = 1435
Score = 319 bits (817), Expect = 3e-87
Identities = 158/191 (82%), Positives = 174/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVR+ DSQ
Sbjct: 1200 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRVGPDSQ 1258
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 1259 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 1318
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 1319 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 1378
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 1379 MGVAQILLEEL 1389
>ref|NP_891559.1| regulating synaptic membrane exocytosis protein 3 [Mus musculus].
Length = 307
Score = 289 bits (740), Expect = 2e-78
Identities = 140/188 (74%), Positives = 163/188 (86%)
Frame = +3
Query: 480 KKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSD 659
KKLRS ++RSTETG+AVEMR+ +TRQ SRESTDGS NS SSEG IFP RL ++SQFSD
Sbjct: 77 KKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSSEGTFIFP-TRLGAESQFSD 135
Query: 660 FLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVK 839
FLDGLGPAQ+VGRQTLATP MGD+ + +MD+ GQLEVE+I ARGL KPGSK+LPA Y+K
Sbjct: 136 FLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIK 195
Query: 840 VYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGV 1019
YLL+NG C+AKKKTKVA+KT +PLYQQ L F+E PQGKVLQ+IVWGDYGRMDHK FMG+
Sbjct: 196 AYLLENGACVAKKKTKVAKKTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGM 255
Query: 1020 AQILLDEL 1043
AQI+LDEL
Sbjct: 256 AQIMLDEL 263
>ref|NP_898844.1| regulating synaptic membrane exocytosis protein 4 [Mus musculus].
Length = 269
Score = 286 bits (733), Expect = 1e-77
Identities = 139/204 (68%), Positives = 167/204 (81%)
Frame = +3
Query: 432 YFPCMNSLXXXXXAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGN 611
YFPCMNS A ++L+ +QRSTETGLAVEM + RQAS ES + SMNSY SEGN
Sbjct: 20 YFPCMNSFDDEDAADSRRLKGAIQRSTETGLAVEMPSRTLRQASHESIEDSMNSYGSEGN 79
Query: 612 LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG 791
L + GV LASD+QFSDFL +GPAQ VGRQTLAT MGD+++G+ ++ GQLEV+II+ARG
Sbjct: 80 LNYGGVCLASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQLEVDIIQARG 139
Query: 792 LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII 971
L KPGSKTLPA Y+K YLL+NGVCIAKKKTKVARK+L+PLY Q+L F ESPQGKVLQ+I
Sbjct: 140 LTAKPGSKTLPAAYIKAYLLENGVCIAKKKTKVARKSLDPLYNQVLLFPESPQGKVLQVI 199
Query: 972 VWGDYGRMDHKSFMGVAQILLDEL 1043
VWG+YGRM+ K FMGVA++LL+EL
Sbjct: 200 VWGNYGRMERKQFMGVARVLLEEL 223
>ref|NP_036125.4| protein piccolo isoform 1 [Mus musculus].
Length = 5068
Score = 61.2 bits (147), Expect = 1e-09
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Frame = +3
Query: 561 SRESTDGSMNSYSSEGNLIFPGV----------RLASDSQFSDFLDGLGPAQLVGRQTLA 710
S S+ GS S SEG+ G ++ + Q G+G A +
Sbjct: 4875 SSGSSVGSGYSVDSEGSSCVAGEPNLLPIPRIGKMGQNGQDPVKQPGMGAADTEAK---- 4930
Query: 711 TPAMGDIQVGM---MDKKG-QLEVEIIRARGLVVKPGSKT-LPAPYVKVYLLDNGVC--I 869
T MG+I++ + M G QL VEI++ R + K S LP YVK+Y+++ +
Sbjct: 4931 TQVMGEIKLALKKEMKTDGEQLIVEILQCRNITYKFKSPDHLPDLYVKIYVINIATQKKV 4990
Query: 870 AKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDEL 1043
KKKT+V R EP + + F SP G LQI+++ + G+ K+ +G A I LD++
Sbjct: 4991 IKKKTRVCRHDREPSFNETFRFSLSPAGHSLQILLFSNGGKFMKKTLIGEACIWLDKV 5048
>ref|NP_001092746.2| phosphoinositide-3-kinase, class 2 beta polypeptide [Mus musculus].
Length = 1632
Score = 58.5 bits (140), Expect = 8e-09
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Frame = +3
Query: 669 GLGPAQLVGRQTLATPAM---GDIQVGMMDKKGQLEVEIIRARGLV-VKPGSKTLPAPYV 836
G PA T A P G++++ + K +L + ++ RGL ++ G+ P PYV
Sbjct: 1484 GPSPAPKSSDGTWARPVGKVGGEVKLSISYKNNKLFIMVMHIRGLQPLQDGND--PDPYV 1541
Query: 837 KVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQG----KVLQIIVWGDYGRMDHK 1004
K+YLL + K+KTKVARKT P Y ++L ++ P+G + LQ+ V + G ++
Sbjct: 1542 KIYLLPDPQKTTKRKTKVARKTCNPTYNEMLVYDGIPKGDLQQRELQLSVLSEQGFWEN- 1600
Query: 1005 SFMGVAQILLDEL 1043
+G I L EL
Sbjct: 1601 LLLGEVHIRLREL 1613
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,207,735
Number of extensions: 1060577
Number of successful extensions: 4698
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4670
Number of HSP's successfully gapped: 18
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008291
(1044 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055492.3| regulating synaptic membrane exocytosis protein... 377 e-104
Alignment gi|NP_001093587.1| regulating synaptic membrane exocytosis prot... 377 e-104
Alignment gi|NP_001161882.1| regulating synaptic membrane exocytosis prot... 321 8e-88
Alignment gi|NP_001161881.1| regulating synaptic membrane exocytosis prot... 321 8e-88
Alignment gi|NP_001161880.1| regulating synaptic membrane exocytosis prot... 321 8e-88
Alignment gi|NP_001161879.1| regulating synaptic membrane exocytosis prot... 321 8e-88
Alignment gi|NP_055804.2| regulating synaptic membrane exocytosis protein... 321 8e-88
Alignment gi|NP_001161883.1| regulating synaptic membrane exocytosis prot... 295 6e-80
Alignment gi|NP_055562.2| regulating synaptic membrane exocytosis protein... 290 1e-78
Alignment gi|NP_892015.1| regulating synaptic membrane exocytosis protein... 285 6e-77
>ref|NP_055492.3| regulating synaptic membrane exocytosis protein 2 isoform b [Homo
sapiens].
Length = 1163
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 927 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 986
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 987 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1046
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1047 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1106
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1107 MGVAQILLDEL 1117
>ref|NP_001093587.1| regulating synaptic membrane exocytosis protein 2 isoform a [Homo
sapiens].
Length = 1349
Score = 377 bits (967), Expect = e-104
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ
Sbjct: 1113 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 1172
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP
Sbjct: 1173 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 1232
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF
Sbjct: 1233 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1292
Query: 1011 MGVAQILLDEL 1043
MGVAQILLDEL
Sbjct: 1293 MGVAQILLDEL 1303
>ref|NP_001161882.1| regulating synaptic membrane exocytosis protein 1 isoform 5 [Homo
sapiens].
Length = 826
Score = 321 bits (822), Expect = 8e-88
Identities = 159/191 (83%), Positives = 175/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQ
Sbjct: 591 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQ 649
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 650 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 709
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 710 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 769
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 770 MGVAQILLEEL 780
>ref|NP_001161881.1| regulating synaptic membrane exocytosis protein 1 isoform 4 [Homo
sapiens].
Length = 760
Score = 321 bits (822), Expect = 8e-88
Identities = 159/191 (83%), Positives = 175/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQ
Sbjct: 525 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQ 583
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 584 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 643
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 644 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 703
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 704 MGVAQILLEEL 714
>ref|NP_001161880.1| regulating synaptic membrane exocytosis protein 1 isoform 3 [Homo
sapiens].
Length = 817
Score = 321 bits (822), Expect = 8e-88
Identities = 159/191 (83%), Positives = 175/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQ
Sbjct: 582 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQ 640
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 641 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 700
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 701 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 760
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 761 MGVAQILLEEL 771
>ref|NP_001161879.1| regulating synaptic membrane exocytosis protein 1 isoform 2 [Homo
sapiens].
Length = 1012
Score = 321 bits (822), Expect = 8e-88
Identities = 159/191 (83%), Positives = 175/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQ
Sbjct: 777 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQ 835
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 836 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 895
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 896 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 955
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 956 MGVAQILLEEL 966
>ref|NP_055804.2| regulating synaptic membrane exocytosis protein 1 isoform 1 [Homo
sapiens].
Length = 1692
Score = 321 bits (822), Expect = 8e-88
Identities = 159/191 (83%), Positives = 175/191 (91%)
Frame = +3
Query: 471 AGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQ 650
+G KKL+ST+QRSTETG+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQ
Sbjct: 1457 SGHKKLKSTIQRSTETGMAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQ 1515
Query: 651 FSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAP 830
FSDFLDGLGPAQLVGRQTLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAP
Sbjct: 1516 FSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAP 1575
Query: 831 YVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSF 1010
YVKVYLL+NG CIAKKKT++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK F
Sbjct: 1576 YVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCF 1635
Query: 1011 MGVAQILLDEL 1043
MGVAQILL+EL
Sbjct: 1636 MGVAQILLEEL 1646
>ref|NP_001161883.1| regulating synaptic membrane exocytosis protein 1 isoform 6 [Homo
sapiens].
Length = 219
Score = 295 bits (754), Expect = 6e-80
Identities = 146/174 (83%), Positives = 159/174 (91%)
Frame = +3
Query: 522 LAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQ 701
+A EMR M RQ SRESTDGS+NSYSSEGNLIFPGVRL +DSQFSDFLDGLGPAQLVGRQ
Sbjct: 1 MAAEMRK-MVRQPSRESTDGSINSYSSEGNLIFPGVRLGADSQFSDFLDGLGPAQLVGRQ 59
Query: 702 TLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKK 881
TLATPAMGDIQ+GM DKKGQLEVE+IRAR L KPGSK+ PAPYVKVYLL+NG CIAKKK
Sbjct: 60 TLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK 119
Query: 882 TKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDEL 1043
T++ARKTL+PLYQQ L F+ESPQGKVLQ+IVWGDYGRMDHK FMGVAQILL+EL
Sbjct: 120 TRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 173
>ref|NP_055562.2| regulating synaptic membrane exocytosis protein 3 [Homo sapiens].
Length = 308
Score = 290 bits (743), Expect = 1e-78
Identities = 138/188 (73%), Positives = 163/188 (86%)
Frame = +3
Query: 480 KKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSD 659
KKLRS ++RSTETG+AVEMR+ +TRQ SRESTDGS NS SS+G IFP RL ++SQFSD
Sbjct: 77 KKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSD 136
Query: 660 FLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVK 839
FLDGLGPAQ+VGRQTLATP MGD+ + +MD+ GQLEVE+I ARGL KPGSK+LPA Y+K
Sbjct: 137 FLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIK 196
Query: 840 VYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGV 1019
VYLL+NG C+AKKKTK+ +KT +PLYQQ L F+E PQGKVLQ+IVWGDYGRMDHK FMG+
Sbjct: 197 VYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGM 256
Query: 1020 AQILLDEL 1043
AQI+LDEL
Sbjct: 257 AQIMLDEL 264
>ref|NP_892015.1| regulating synaptic membrane exocytosis protein 4 isoform 2 [Homo
sapiens].
Length = 269
Score = 285 bits (728), Expect = 6e-77
Identities = 137/204 (67%), Positives = 166/204 (81%)
Frame = +3
Query: 432 YFPCMNSLXXXXXAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGN 611
YFPCMNS ++L+ +QRSTETGLAVEM + RQAS ES + SMNSY SEGN
Sbjct: 20 YFPCMNSFDDEDAGDSRRLKGAIQRSTETGLAVEMPSRTLRQASHESIEDSMNSYGSEGN 79
Query: 612 LIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARG 791
L + GV LASD+QFSDFL +GPAQ VGRQTLAT MGD+++G+ ++ GQLEV+II+ARG
Sbjct: 80 LNYGGVCLASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQLEVDIIQARG 139
Query: 792 LVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQII 971
L KPGSKTLPA Y+K YLL+NG+CIAKKKTKVARK+L+PLY Q+L F ESPQGKVLQ+I
Sbjct: 140 LTAKPGSKTLPAAYIKAYLLENGICIAKKKTKVARKSLDPLYNQVLLFPESPQGKVLQVI 199
Query: 972 VWGDYGRMDHKSFMGVAQILLDEL 1043
VWG+YGRM+ K FMGVA++LL+EL
Sbjct: 200 VWGNYGRMERKQFMGVARVLLEEL 223
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,369,233
Number of extensions: 1291657
Number of successful extensions: 6303
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 6258
Number of HSP's successfully gapped: 24
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008291
(1044 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 880 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 880 bits (444), Expect = 0.0
Identities = 444/444 (100%)
Strand = Plus / Plus
Query: 25 cggcaagactgactcgcagccacagcctccgggaacctcagctccctcctggcgagactt 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35648557 cggcaagactgactcgcagccacagcctccgggaacctcagctccctcctggcgagactt 35648616
Query: 85 tcaccgcgggcaaccgcgtccccgcttgccaccgcctggatccccgccgcttaaccctcc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35648617 tcaccgcgggcaaccgcgtccccgcttgccaccgcctggatccccgccgcttaaccctcc 35648676
Query: 145 gcagaaagtggaggtcccggcagccggggaagccgcgtctggaccagatcgggtcgggga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35648677 gcagaaagtggaggtcccggcagccggggaagccgcgtctggaccagatcgggtcgggga 35648736
Query: 205 ggtaggggccggtatcccagtgtcccgcggcaccatcccggcccccgaagtgctgcggtc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35648737 ggtaggggccggtatcccagtgtcccgcggcaccatcccggcccccgaagtgctgcggtc 35648796
Query: 265 gccgcgccccagccgccaagacgcctcgtatcttgtaccgcgggaaaagcggatcttcct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35648797 gccgcgccccagccgccaagacgcctcgtatcttgtaccgcgggaaaagcggatcttcct 35648856
Query: 325 ccaagatgggccggcagggcttggggggctcgggcgccgcggggcgctccatgcagcgct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35648857 ccaagatgggccggcagggcttggggggctcgggcgccgcggggcgctccatgcagcgct 35648916
Query: 385 cccagagccggagcagcctctccgcttccttcgaggcactggccggctactttccctgca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35648917 cccagagccggagcagcctctccgcttccttcgaggcactggccggctactttccctgca 35648976
Query: 445 tgaactccctggaagaggaagaag 468
||||||||||||||||||||||||
Sbjct: 35648977 tgaactccctggaagaggaagaag 35649000
Score = 880 bits (444), Expect = 0.0
Identities = 444/444 (100%)
Strand = Plus / Minus
Query: 25 cggcaagactgactcgcagccacagcctccgggaacctcagctccctcctggcgagactt 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35786867 cggcaagactgactcgcagccacagcctccgggaacctcagctccctcctggcgagactt 35786808
Query: 85 tcaccgcgggcaaccgcgtccccgcttgccaccgcctggatccccgccgcttaaccctcc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35786807 tcaccgcgggcaaccgcgtccccgcttgccaccgcctggatccccgccgcttaaccctcc 35786748
Query: 145 gcagaaagtggaggtcccggcagccggggaagccgcgtctggaccagatcgggtcgggga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35786747 gcagaaagtggaggtcccggcagccggggaagccgcgtctggaccagatcgggtcgggga 35786688
Query: 205 ggtaggggccggtatcccagtgtcccgcggcaccatcccggcccccgaagtgctgcggtc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35786687 ggtaggggccggtatcccagtgtcccgcggcaccatcccggcccccgaagtgctgcggtc 35786628
Query: 265 gccgcgccccagccgccaagacgcctcgtatcttgtaccgcgggaaaagcggatcttcct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35786627 gccgcgccccagccgccaagacgcctcgtatcttgtaccgcgggaaaagcggatcttcct 35786568
Query: 325 ccaagatgggccggcagggcttggggggctcgggcgccgcggggcgctccatgcagcgct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35786567 ccaagatgggccggcagggcttggggggctcgggcgccgcggggcgctccatgcagcgct 35786508
Query: 385 cccagagccggagcagcctctccgcttccttcgaggcactggccggctactttccctgca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35786507 cccagagccggagcagcctctccgcttccttcgaggcactggccggctactttccctgca 35786448
Query: 445 tgaactccctggaagaggaagaag 468
||||||||||||||||||||||||
Sbjct: 35786447 tgaactccctggaagaggaagaag 35786424
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 467 agaagctggaggtaaaaagctacggagcactgtccagagaagtacagaaacaggcttggc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35768564 agaagctggaggtaaaaagctacggagcactgtccagagaagtacagaaacaggcttggc 35768505
Query: 527 tgtggaaatgaggaactggatgactcgacaggcaagccgagaatccacagacggcagcat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35768504 tgtggaaatgaggaactggatgactcgacaggcaagccgagaatccacagacggcagcat 35768445
Query: 587 gaacagctacagctccgaaggaaa 610
||||||||||||||||||||||||
Sbjct: 35768444 gaacagctacagctccgaaggaaa 35768421
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 611 tctcatcttccctggtgttcgcttggcctctgatagccaattcagcgattttctggatgg 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35762043 tctcatcttccctggtgttcgcttggcctctgatagccaattcagcgattttctggatgg 35761984
Query: 671 ccttggccctgcccagctcgtggggcgccagactctggccacacctgcaatgggt 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35761983 ccttggccctgcccagctcgtggggcgccagactctggccacacctgcaatgggt 35761929
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 723 ggtgacattcaggtaggaatgatggacaaaaagggacagttggaggtggagatcattcgg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35761623 ggtgacattcaggtaggaatgatggacaaaaagggacagttggaggtggagatcattcgg 35761564
Query: 783 gcccgtggccttgttgtaaaaccaggttccaagacactgccag 825
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35761563 gcccgtggccttgttgtaaaaccaggttccaagacactgccag 35761521
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 962 acagatcattgtctggggagattatggccgcatggatcacaaatcctttatgggagtggc 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35759600 acagatcattgtctggggagattatggccgcatggatcacaaatcctttatgggagtggc 35759541
Query: 1022 ccagatactcttagatgaactgg 1044
|||||||||||||||||||||||
Sbjct: 35759540 ccagatactcttagatgaactgg 35759518
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 901 cgctggagcccctttaccagcagctattatcttttgaagaaagtccccaaggaaaggttt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35760155 cgctggagcccctttaccagcagctattatcttttgaagaaagtccccaaggaaaggttt 35760096
Query: 961 tacag 965
|||||
Sbjct: 35760095 tacag 35760091
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 824 agcaccatatgtaaaggtgtatctattagataatggagtctgcatagcc 872
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35760232 agcaccatatgtaaaggtgtatctattagataatggagtctgcatagcc 35760184
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,813,241
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 8
Length of query: 1044
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1023
Effective length of database: 2,808,413,156
Effective search space: 2873006658588
Effective search space used: 2873006658588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)