Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008294
(1663 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]. 672 0.0
Alignment gi|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]. 561 0.0
Alignment gi|XP_002692514.1| PREDICTED: polyadenylate-binding protein 1-l... 488 e-138
Alignment gi|XP_882298.3| PREDICTED: polyadenylate-binding protein 1-like... 488 e-138
Alignment gi|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]. 355 7e-98
Alignment gi|XP_002699806.1| PREDICTED: poly(A) binding protein, cytoplas... 355 7e-98
Alignment gi|XP_002700160.1| PREDICTED: polyadenylate-binding protein 1-l... 132 2e-48
Alignment gi|XP_002706364.1| PREDICTED: polyadenylate-binding protein 1-l... 132 2e-48
Alignment gi|XP_002700052.1| PREDICTED: PABPC1L2B protein-like [Bos tauru... 142 1e-33
Alignment gi|XP_002700050.1| PREDICTED: PABPC1L2B protein-like [Bos tauru... 142 1e-33
>ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus].
Length = 645
Score = 672 bits (1735), Expect(2) = 0.0
Identities = 336/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEI+GKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 263 bits (673), Expect(2) = 0.0
Identities = 151/226 (66%), Positives = 156/226 (69%), Gaps = 6/226 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTG SECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTG----------------SECPDRLAMD 479
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXX-YKYASSVRSXXXXXXX 1343
FGGAGAAQQGLTDSCQSGGVPTAVQNL YKYASS+RS
Sbjct: 480 FGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAAPRAVAPYKYASSIRSPHPAIQP 539
Query: 1344 XXXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI* 1523
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI
Sbjct: 540 LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 599
Query: 1524 HSELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
+SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 600 NSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 645
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus].
Length = 636
Score = 561 bits (1446), Expect(2) = 0.0
Identities = 275/340 (80%), Positives = 309/340 (90%), Gaps = 1/340 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY FVHFETQEAA++AIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGA+AKEFTNVYIKNFGE++DDE LK+LF +FG LSVKVM D
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVS+E+HEDA KAV+EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+RI+RYQGVNLY+KNLDD IDDE+LRKEFSPFG+ITSAKVM+E GRSKGFGFVCFSSPEE
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA- 897
ATKAVTEMNGRIV +KPLYVALAQRKEER+AHLTNQYMQR+A +RA+P N ++N +QPA
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAP 404
Query: 898 AGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLP 1017
GYF+ A+PQ Q R YY P+Q+AQ+RP+PRW G P
Sbjct: 405 PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARP 444
Score = 135 bits (339), Expect(2) = 0.0
Identities = 98/211 (46%), Positives = 110/211 (52%), Gaps = 5/211 (2%)
Frame = +3
Query: 1017 FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT--TAQRVGSECPDRLAMDFGGAGAAQ 1190
FQ MP AIR + PRP + P AS +P + QRV + + A AA
Sbjct: 447 FQNMPGAIRPAAPRPPFSTMRP-----ASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAA 501
Query: 1191 QGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXXX-- 1364
+ V T Q YKYA+ VR+
Sbjct: 502 --------TPAVRTVPQ------------------YKYAAGVRNPQQHLNAQPQVTMQQP 535
Query: 1365 -VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLH 1541
VHVQGQEPLTASMLA+APP EQKQMLGE PLIQ MH TLAGKITGMLLEI +SELLH
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 1542 MLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
MLE P + DEAV VLQAH A KE AQK
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQA-KEAAQK 625
Score = 179 bits (454), Expect = 7e-45
Identities = 108/282 (38%), Positives = 163/282 (57%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA+V+F+ A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ V + +R+ L + N++IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+GFV +E E A +A+E+MNG ++ + +FVGR + + ER+AEL + ++
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSS 711
N+YIKN + +DDE+L+ F FG S KVM E G+SKGFGFV F
Sbjct: 191 ----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E+A KAV EMNG+ + K +YV AQ+K ER+ L ++ Q
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 105 bits (261), Expect = 2e-22
Identities = 63/196 (32%), Positives = 111/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK + + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+GFV F + E A +A+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_002692514.1| PREDICTED: polyadenylate-binding protein 1-like [Bos taurus].
Length = 613
Score = 488 bits (1256), Expect = e-138
Identities = 245/340 (72%), Positives = 284/340 (83%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L+ SIDNKALYDTFS FGNILSCKVVCDE+GS+G+ FVHFET EAA AI MNGMLLND
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVG FKSR+ERE ELGA+A EFTN+Y+KN +VD++ L++LFSQFGK LSVKVMRD
Sbjct: 166 RKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SG S+GFGFV++EKHE+A KAV MNG+E+SG++++VGRAQK+VERQ ELKR+FEQ+KQ
Sbjct: 226 DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+R++RYQGVNLY+KNLDD+IDDEKLRKEFSP+G ITSAKVM E G SKGFGFVCFSSPEE
Sbjct: 286 DRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVG+KPLYVALAQRKEERKA LTNQYMQR++ MRAL IL FQ A
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRAL-GGPILGSFQQPA 404
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLPS 1020
YF+PAVPQ + PYY ++P PRW PS
Sbjct: 405 -SYFLPAVPQPPAQAPYYGSG--PPIQPAPRWTAQPPRPS 441
Score = 171 bits (432), Expect = 2e-42
Identities = 102/282 (36%), Positives = 157/282 (55%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA+++F+ A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + + + G + N++IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGQPIRI------MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D G S+GFGFV +E HE A A+ MNG ++ + +FVG + + ER+ EL + +
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSS 711
N+Y+KNL +D+++L+ FS FG + S KVM +D G S+GFGFV F
Sbjct: 191 ----------TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEK 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
EEA KAV MNGR V + LYV AQ++ ER+ L ++ Q
Sbjct: 241 HEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 101 bits (252), Expect = 2e-21
Identities = 55/83 (66%), Positives = 63/83 (75%)
Frame = +3
Query: 1365 VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLHM 1544
VHV GQEPLTASMLAAAP EQKQM+GE PL+ +H+ LAGKITGMLLEI +SELL M
Sbjct: 521 VHVPGQEPLTASMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLM 580
Query: 1545 LEVPRVSPLQGDEAVXVLQAHHA 1613
LE P + +EA+ VLQAH A
Sbjct: 581 LESPESLNAKVEEALAVLQAHQA 603
Score = 101 bits (251), Expect = 2e-21
Identities = 61/195 (31%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + +V + L E FS G LS++V RD + +S G+ ++++++ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN + I G+ I + +Q+ + R GV N++IKNL+D+ID++
Sbjct: 72 MNFEVIKGQPIRIMWSQR-----------------DPGLRKSGVGNIFIKNLEDSIDNKA 114
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV+ ++ S+GFGFV F + E A A++ MNG ++ + ++V +
Sbjct: 115 LYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 793 RKEERKAHLTNQYMQ 837
+ ER+ L + M+
Sbjct: 175 SRREREVELGARAME 189
>ref|XP_882298.3| PREDICTED: polyadenylate-binding protein 1-like isoform 19 [Bos
taurus].
Length = 613
Score = 488 bits (1256), Expect = e-138
Identities = 245/340 (72%), Positives = 284/340 (83%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L+ SIDNKALYDTFS FGNILSCKVVCDE+GS+G+ FVHFET EAA AI MNGMLLND
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVG FKSR+ERE ELGA+A EFTN+Y+KN +VD++ L++LFSQFGK LSVKVMRD
Sbjct: 166 RKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SG S+GFGFV++EKHE+A KAV MNG+E+SG++++VGRAQK+VERQ ELKR+FEQ+KQ
Sbjct: 226 DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+R++RYQGVNLY+KNLDD+IDDEKLRKEFSP+G ITSAKVM E G SKGFGFVCFSSPEE
Sbjct: 286 DRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVG+KPLYVALAQRKEERKA LTNQYMQR++ MRAL IL FQ A
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRAL-GGPILGSFQQPA 404
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLPS 1020
YF+PAVPQ + PYY ++P PRW PS
Sbjct: 405 -SYFLPAVPQPPAQAPYYGSG--PPIQPAPRWTAQPPRPS 441
Score = 171 bits (432), Expect = 2e-42
Identities = 102/282 (36%), Positives = 157/282 (55%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA+++F+ A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + + + G + N++IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGQPIRI------MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D G S+GFGFV +E HE A A+ MNG ++ + +FVG + + ER+ EL + +
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSS 711
N+Y+KNL +D+++L+ FS FG + S KVM +D G S+GFGFV F
Sbjct: 191 ----------TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEK 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
EEA KAV MNGR V + LYV AQ++ ER+ L ++ Q
Sbjct: 241 HEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 101 bits (252), Expect = 2e-21
Identities = 55/83 (66%), Positives = 63/83 (75%)
Frame = +3
Query: 1365 VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLHM 1544
VHV GQEPLTASMLAAAP EQKQM+GE PL+ +H+ LAGKITGMLLEI +SELL M
Sbjct: 521 VHVPGQEPLTASMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLM 580
Query: 1545 LEVPRVSPLQGDEAVXVLQAHHA 1613
LE P + +EA+ VLQAH A
Sbjct: 581 LESPESLNAKVEEALAVLQAHQA 603
Score = 101 bits (251), Expect = 2e-21
Identities = 61/195 (31%), Positives = 111/195 (56%), Gaps = 2/195 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + +V + L E FS G LS++V RD + +S G+ ++++++ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN + I G+ I + +Q+ + R GV N++IKNL+D+ID++
Sbjct: 72 MNFEVIKGQPIRIMWSQR-----------------DPGLRKSGVGNIFIKNLEDSIDNKA 114
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV+ ++ S+GFGFV F + E A A++ MNG ++ + ++V +
Sbjct: 115 LYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 793 RKEERKAHLTNQYMQ 837
+ ER+ L + M+
Sbjct: 175 SRREREVELGARAME 189
>ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus].
Length = 382
Score = 355 bits (911), Expect = 7e-98
Identities = 178/267 (66%), Positives = 223/267 (83%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDN+AL+ FSAFG+ILSCKVVCD+NGSKGYA+VHF++ AA++AI MNG+ LN+
Sbjct: 113 LDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNN 172
Query: 181 RKVFVGRFKSRKEREAELGAKAKE-FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 357
R+V+VGRFK +ER AE+ + K FTNV++KNFG+++DD+ LKELFS++G T SVKV+R
Sbjct: 173 RQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIR 232
Query: 358 DPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 537
D SGKSKGFGFV YE HE A KAV +++GK I GKV++VGRAQKK+ER AEL+R+FE+L+
Sbjct: 233 DSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
Query: 538 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPE 717
+ SR GV +YIKNLD+TIDDEKL++EFS FGSI+ AKVM+E G+ KGFG +CFSS E
Sbjct: 293 LKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFE 352
Query: 718 EATKAVTEMNGRIVGSKPLYVALAQRK 798
EATKAV EMNGRIVGSKPL V L Q +
Sbjct: 353 EATKAVDEMNGRIVGSKPLQVTLGQAR 379
Score = 145 bits (367), Expect = 8e-35
Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 3/280 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
LD + LY F G + ++ D GY +V+F A+ A+ MN L+
Sbjct: 25 LDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLI 84
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
N K F + +R + G N++IKN + +D+ L LFS FG LS KV+
Sbjct: 85 NG-KPFRLMWSQPDDRLRKSG-----IGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVV 138
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+ +V ++ AN+A+ MNG ++ + ++VGR + ER AE++ +
Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR---- 193
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSS 711
+ N+++KN D +DD+KL++ FS +G S KV+ + G+SKGFGFV + +
Sbjct: 194 -----DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYET 248
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 831
E A KAV +++G+ + K LYV AQ+K ER A L ++
Sbjct: 249 HEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Score = 86.7 bits (213), Expect = 6e-17
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 1/187 (0%)
Frame = +1
Query: 262 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSK-GFGFVSYEKHEDANKAVEEM 438
+Y+ + +V ++ L + F G ++ RDP +S G+G+V++ DA A+ M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 439 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 618
N I+GK + +Q ++L++ I N++IKNLD +ID+ L
Sbjct: 80 NFDLINGKPFRLMWSQPD-----------DRLRKSGIG-----NIFIKNLDKSIDNRALF 123
Query: 619 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 798
FS FGSI S KV+ +D SKG+ +V F S A +A+ MNG + ++ +YV +
Sbjct: 124 YLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Query: 799 EERKAHL 819
EER A +
Sbjct: 184 EERAAEV 190
Score = 51.2 bits (121), Expect = 3e-06
Identities = 24/72 (33%), Positives = 46/72 (63%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LD++ID++ L + FS+FG+I KV+ + KG+ + F + E A KA+++MNG ++
Sbjct: 309 LDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGS 368
Query: 181 RKVFVGRFKSRK 216
+ + V ++R+
Sbjct: 369 KPLQVTLGQARR 380
>ref|XP_002699806.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Bos taurus].
Length = 382
Score = 355 bits (911), Expect = 7e-98
Identities = 178/267 (66%), Positives = 223/267 (83%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDN+AL+ FSAFG+ILSCKVVCD+NGSKGYA+VHF++ AA++AI MNG+ LN+
Sbjct: 113 LDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNN 172
Query: 181 RKVFVGRFKSRKEREAELGAKAKE-FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 357
R+V+VGRFK +ER AE+ + K FTNV++KNFG+++DD+ LKELFS++G T SVKV+R
Sbjct: 173 RQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIR 232
Query: 358 DPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 537
D SGKSKGFGFV YE HE A KAV +++GK I GKV++VGRAQKK+ER AEL+R+FE+L+
Sbjct: 233 DSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
Query: 538 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPE 717
+ SR GV +YIKNLD+TIDDEKL++EFS FGSI+ AKVM+E G+ KGFG +CFSS E
Sbjct: 293 LKEKSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFE 352
Query: 718 EATKAVTEMNGRIVGSKPLYVALAQRK 798
EATKAV EMNGRIVGSKPL V L Q +
Sbjct: 353 EATKAVDEMNGRIVGSKPLQVTLGQAR 379
Score = 145 bits (367), Expect = 8e-35
Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 3/280 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
LD + LY F G + ++ D GY +V+F A+ A+ MN L+
Sbjct: 25 LDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLI 84
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
N K F + +R + G N++IKN + +D+ L LFS FG LS KV+
Sbjct: 85 NG-KPFRLMWSQPDDRLRKSG-----IGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVV 138
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+ +V ++ AN+A+ MNG ++ + ++VGR + ER AE++ +
Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR---- 193
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSS 711
+ N+++KN D +DD+KL++ FS +G S KV+ + G+SKGFGFV + +
Sbjct: 194 -----DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYET 248
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 831
E A KAV +++G+ + K LYV AQ+K ER A L ++
Sbjct: 249 HEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Score = 86.7 bits (213), Expect = 6e-17
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 1/187 (0%)
Frame = +1
Query: 262 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSK-GFGFVSYEKHEDANKAVEEM 438
+Y+ + +V ++ L + F G ++ RDP +S G+G+V++ DA A+ M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 439 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 618
N I+GK + +Q ++L++ I N++IKNLD +ID+ L
Sbjct: 80 NFDLINGKPFRLMWSQPD-----------DRLRKSGIG-----NIFIKNLDKSIDNRALF 123
Query: 619 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 798
FS FGSI S KV+ +D SKG+ +V F S A +A+ MNG + ++ +YV +
Sbjct: 124 YLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Query: 799 EERKAHL 819
EER A +
Sbjct: 184 EERAAEV 190
Score = 51.2 bits (121), Expect = 3e-06
Identities = 24/72 (33%), Positives = 46/72 (63%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LD++ID++ L + FS+FG+I KV+ + KG+ + F + E A KA+++MNG ++
Sbjct: 309 LDETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGS 368
Query: 181 RKVFVGRFKSRK 216
+ + V ++R+
Sbjct: 369 KPLQVTLGQARR 380
>ref|XP_002700160.1| PREDICTED: polyadenylate-binding protein 1-like [Bos taurus].
Length = 269
Score = 132 bits (332), Expect(2) = 2e-48
Identities = 96/211 (45%), Positives = 111/211 (52%), Gaps = 5/211 (2%)
Frame = +3
Query: 1017 FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT--TAQRVGSECPDRLAMDFGGAGAAQ 1190
FQ MPSAI + PRP L + P AS +P + QRV + +
Sbjct: 80 FQNMPSAICPAAPRPPLSTVRP-----ASSQVPRVMSTQRVANTSTQTM----------- 123
Query: 1191 QGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXXX-- 1364
GL + + AV+ + YKYA+ VR+
Sbjct: 124 -GLCPAAAAAAATPAVRTIPQ--------------YKYAAGVRNPQQHLNAQPQVTMQQP 168
Query: 1365 -VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLH 1541
VHVQGQEPLTASMLA+APP EQKQMLGE PLIQ MH TLAGKITGMLLEI +SELLH
Sbjct: 169 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 228
Query: 1542 MLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
MLE + DEAV VLQAH A KE AQK
Sbjct: 229 MLESLESLRSKVDEAVAVLQAHQA-KEAAQK 258
Score = 80.1 bits (196), Expect(2) = 2e-48
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Frame = +1
Query: 823 NQYMQRVAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ 999
NQYMQR+A +RA+P N ++N +QPA GYF+ A+PQAQ R YY PNQ+AQ+RP+P W
Sbjct: 13 NQYMQRMASVRAVP-NPVINPYQPALPSGYFMAAIPQAQNRAEYYPPNQIAQLRPSPHWT 71
Query: 1000 QGGRLP 1017
G P
Sbjct: 72 AQGARP 77
>ref|XP_002706364.1| PREDICTED: polyadenylate-binding protein 1-like, partial [Bos
taurus].
Length = 266
Score = 132 bits (332), Expect(2) = 2e-48
Identities = 96/211 (45%), Positives = 111/211 (52%), Gaps = 5/211 (2%)
Frame = +3
Query: 1017 FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT--TAQRVGSECPDRLAMDFGGAGAAQ 1190
FQ MPSAI + PRP L + P AS +P + QRV + +
Sbjct: 77 FQNMPSAICPAAPRPPLSTVRP-----ASSQVPRVMSTQRVANTSTQTM----------- 120
Query: 1191 QGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXXX-- 1364
GL + + AV+ + YKYA+ VR+
Sbjct: 121 -GLCPAAAAAAATPAVRTIPQ--------------YKYAAGVRNPQQHLNAQPQVTMQQP 165
Query: 1365 -VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLH 1541
VHVQGQEPLTASMLA+APP EQKQMLGE PLIQ MH TLAGKITGMLLEI +SELLH
Sbjct: 166 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 225
Query: 1542 MLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
MLE + DEAV VLQAH A KE AQK
Sbjct: 226 MLESLESLRSKVDEAVAVLQAHQA-KEAAQK 255
Score = 80.1 bits (196), Expect(2) = 2e-48
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Frame = +1
Query: 823 NQYMQRVAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ 999
NQYMQR+A +RA+P N ++N +QPA GYF+ A+PQAQ R YY PNQ+AQ+RP+P W
Sbjct: 10 NQYMQRMASVRAVP-NPVINPYQPALPSGYFMAAIPQAQNRAEYYPPNQIAQLRPSPHWT 68
Query: 1000 QGGRLP 1017
G P
Sbjct: 69 AQGARP 74
>ref|XP_002700052.1| PREDICTED: PABPC1L2B protein-like [Bos taurus].
Length = 489
Score = 142 bits (357), Expect = 1e-33
Identities = 67/100 (67%), Positives = 82/100 (82%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L K+IDNKALY+ FSAFGNILSCKV CDE G KGY FVHF+ QE+A++AI+ MNGM LN
Sbjct: 386 LGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNY 445
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 300
RK+FVGRFKS KEREAE GA A++ T+ +K+F E+ D+E
Sbjct: 446 RKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 485
Score = 100 bits (248), Expect = 5e-21
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS ++ D+ S GYA+V+++ A +A+E +N ++
Sbjct: 298 LHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVI 357
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
R V + +R+ L + NV+IKN G+ +D++ L +FS FG LS KV
Sbjct: 358 KGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 411
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 510
D G KG+GFV ++K E A +A++ MNG ++ + IFVGR + ER+AE
Sbjct: 412 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 462
Score = 96.3 bits (238), Expect = 7e-20
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 7/206 (3%)
Frame = +1
Query: 217 EREAELGAKAKEFTN-----VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSK 378
+ +AE G ++ N +Y+ + EV + L E FS G LS+++ RD + +S
Sbjct: 273 DADAETGRGSERNPNFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSL 332
Query: 379 GFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 558
G+ +V+Y++ DA +A+E +N I G+ + + +Q+ + R
Sbjct: 333 GYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQR-----------------DPSLRK 375
Query: 559 QGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 735
GV N++IKNL TID++ L FS FG+I S KV ++ KG+GFV F E A +A+
Sbjct: 376 SGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAI 435
Query: 736 TEMNGRIVGSKPLYVALAQRKEERKA 813
MNG + + ++V + +ER+A
Sbjct: 436 DAMNGMFLNYRKIFVGRFKSHKEREA 461
>ref|XP_002700050.1| PREDICTED: PABPC1L2B protein-like [Bos taurus].
Length = 200
Score = 142 bits (357), Expect = 1e-33
Identities = 67/100 (67%), Positives = 82/100 (82%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L K+IDNKALY+ FSAFGNILSCKV CDE G KGY FVHF+ QE+A++AI+ MNGM LN
Sbjct: 97 LGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNY 156
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 300
RK+FVGRFKS KEREAE GA A++ T+ +K+F E+ D+E
Sbjct: 157 RKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 99.4 bits (246), Expect = 9e-21
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS ++ D+ S GYA+V+++ A +A+E +N ++
Sbjct: 9 LHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVI 68
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
R V + +R+ L + NV+IKN G+ +D++ L +FS FG LS KV
Sbjct: 69 KGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 510
D G KG+GFV ++K E A +A++ MNG ++ + IFVGR + ER+AE
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 95.1 bits (235), Expect = 2e-19
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + EV + L E FS G LS+++ RD + +S G+ +V+Y++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
+N I G+ + + +Q+ + R GV N++IKNL TID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV ++ KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 793 RKEERKA 813
+ER+A
Sbjct: 166 SHKEREA 172
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,470,752
Number of extensions: 1588992
Number of successful extensions: 7757
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 7362
Number of HSP's successfully gapped: 240
Length of query: 554
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 447
Effective length of database: 14,140,958
Effective search space: 6321008226
Effective search space used: 6321008226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008294
(1663 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539581.2| PREDICTED: similar to poly(A) binding protein, ... 672 0.0
Alignment gi|XP_857000.1| PREDICTED: similar to Polyadenylate-binding pro... 672 0.0
Alignment gi|XP_857420.1| PREDICTED: similar to Polyadenylate-binding pro... 664 0.0
Alignment gi|XP_857374.1| PREDICTED: similar to Polyadenylate-binding pro... 659 0.0
Alignment gi|XP_857337.1| PREDICTED: similar to Polyadenylate-binding pro... 672 0.0
Alignment gi|XP_857168.1| PREDICTED: similar to poly(A) binding protein, ... 672 0.0
Alignment gi|XP_857894.1| PREDICTED: similar to poly(A) binding protein, ... 672 0.0
Alignment gi|XP_857859.1| PREDICTED: similar to poly(A) binding protein, ... 672 0.0
Alignment gi|XP_857539.1| PREDICTED: similar to poly(A) binding protein, ... 667 0.0
Alignment gi|XP_857579.1| PREDICTED: similar to poly(A) binding protein, ... 667 0.0
>ref|XP_539581.2| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
1 isoform 1 [Canis familiaris].
Length = 660
Score = 672 bits (1733), Expect(2) = 0.0
Identities = 336/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 306 bits (784), Expect(2) = 0.0
Identities = 166/225 (73%), Positives = 170/225 (75%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 495
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTD CQSGGVPTAVQ L YKYASSVRS
Sbjct: 496 FGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 555
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 556 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 615
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 616 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 660
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857000.1| PREDICTED: similar to Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein) (iPABP) (Activated-platelet
protein-1) (APP-1) isoform 2 [Canis familiaris].
Length = 644
Score = 672 bits (1733), Expect(2) = 0.0
Identities = 336/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 265 bits (676), Expect(2) = 0.0
Identities = 150/225 (66%), Positives = 154/225 (68%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTG SECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTG----------------SECPDRLAMD 479
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTD CQSGGVPTAVQ L YKYASSVRS
Sbjct: 480 FGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 539
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 540 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 599
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 600 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 644
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857420.1| PREDICTED: similar to Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein) (iPABP) (Activated-platelet
protein-1) (APP-1) isoform 11 [Canis familiaris].
Length = 652
Score = 664 bits (1714), Expect(2) = 0.0
Identities = 336/345 (97%), Positives = 337/345 (97%), Gaps = 8/345 (2%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRY--------QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 696
ERISRY QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF
Sbjct: 286 ERISRYQVRVILLLQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 345
Query: 697 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI 876
VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI
Sbjct: 346 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI 405
Query: 877 LNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
LNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 LNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 450
Score = 265 bits (676), Expect(2) = 0.0
Identities = 150/225 (66%), Positives = 154/225 (68%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTG SECPDRLAMD
Sbjct: 444 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTG----------------SECPDRLAMD 487
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTD CQSGGVPTAVQ L YKYASSVRS
Sbjct: 488 FGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 547
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 548 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 607
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 608 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 652
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857374.1| PREDICTED: similar to Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein) (iPABP) (Activated-platelet
protein-1) (APP-1) isoform 10 [Canis familiaris].
Length = 646
Score = 659 bits (1700), Expect(2) = 0.0
Identities = 333/339 (98%), Positives = 334/339 (98%), Gaps = 2/339 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERIS--RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSP 714
ERI QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSP
Sbjct: 286 ERIMILLLQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSP 345
Query: 715 EEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 894
EEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP
Sbjct: 346 EEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 405
Query: 895 AAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
AAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 AAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 444
Score = 265 bits (676), Expect(2) = 0.0
Identities = 150/225 (66%), Positives = 154/225 (68%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTG SECPDRLAMD
Sbjct: 438 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTG----------------SECPDRLAMD 481
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTD CQSGGVPTAVQ L YKYASSVRS
Sbjct: 482 FGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 541
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 542 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 601
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 602 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 646
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857337.1| PREDICTED: similar to Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein) (iPABP) (Activated-platelet
protein-1) (APP-1) isoform 9 [Canis familiaris].
Length = 640
Score = 672 bits (1733), Expect(2) = 0.0
Identities = 336/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 251 bits (642), Expect(2) = 0.0
Identities = 142/216 (65%), Positives = 146/216 (67%), Gaps = 5/216 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTG SECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTG----------------SECPDRLAMD 479
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTD CQSGGVPTAVQ L YKYASSVRS
Sbjct: 480 FGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 539
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 540 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 599
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
SELLHMLE P + DEAV VLQAHHA+KE AQK
Sbjct: 600 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857168.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
1 isoform 6 [Canis familiaris].
Length = 631
Score = 672 bits (1733), Expect(2) = 0.0
Identities = 336/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 232 bits (592), Expect(2) = 0.0
Identities = 138/225 (61%), Positives = 142/225 (63%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVG
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVG---------- 485
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
VPTAVQ L YKYASSVRS
Sbjct: 486 -------------------VPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 526
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 527 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 586
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 587 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 631
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857894.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
1 isoform 23 [Canis familiaris].
Length = 634
Score = 672 bits (1733), Expect(2) = 0.0
Identities = 336/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 228 bits (580), Expect(2) = 0.0
Identities = 136/225 (60%), Positives = 144/225 (64%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVG +
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGEQT------- 488
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
G + Q + + P AV YKYASSVRS
Sbjct: 489 --GLESVQTLAPRAAVAAAAPRAVA-----------------PYKYASSVRSPHPAIQPL 529
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 530 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 589
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 590 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 634
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857859.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
1 isoform 22 [Canis familiaris].
Length = 635
Score = 672 bits (1733), Expect(2) = 0.0
Identities = 336/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 224 bits (572), Expect(2) = 0.0
Identities = 136/225 (60%), Positives = 144/225 (64%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVG+ ++
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGNCSSQNMSCI 495
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
AA + P AV YKYASSVRS
Sbjct: 496 PRAPRAAV--------AAAAPRAVA-----------------PYKYASSVRSPHPAIQPL 530
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 531 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 590
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 591 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 635
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857539.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
1 isoform 14 [Canis familiaris].
Length = 626
Score = 667 bits (1722), Expect(2) = 0.0
Identities = 334/335 (99%), Positives = 335/335 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQG 1005
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQG
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQG 440
Score = 222 bits (566), Expect(2) = 0.0
Identities = 135/220 (61%), Positives = 145/220 (65%)
Frame = +3
Query: 1002 RWETSFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGGAG 1181
RW+ QGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVG ++ ++ G
Sbjct: 436 RWQ---QGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVG----EQTGLECG--- 485
Query: 1182 AAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXX 1361
G+ +S V A YKYASSVRS
Sbjct: 486 ---LGMRESAPRAAVAAAAPRAVAP-------------YKYASSVRSPHPAIQPLQPA-- 527
Query: 1362 XVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLH 1541
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +SELLH
Sbjct: 528 -VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 586
Query: 1542 MLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
MLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 587 MLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 626
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_857579.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform
1 isoform 15 [Canis familiaris].
Length = 636
Score = 667 bits (1722), Expect(2) = 0.0
Identities = 334/335 (99%), Positives = 335/335 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQG 1005
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQG
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQG 440
Score = 219 bits (559), Expect(2) = 0.0
Identities = 135/227 (59%), Positives = 145/227 (63%), Gaps = 7/227 (3%)
Frame = +3
Query: 1002 RWETSFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGGAG 1181
RW+ QGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVG ++ ++ G
Sbjct: 436 RWQ---QGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVG----EQTGLECG--- 485
Query: 1182 AAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXX 1361
G+ +S V A YKYASSVRS
Sbjct: 486 ---LGMRESAPRAAVAAAAPRAVAP-------------YKYASSVRSPHPAIQPLQVRPA 529
Query: 1362 X-------VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI 1520
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI
Sbjct: 530 KKNAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEI 589
Query: 1521 *HSELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
+SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 590 DNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 636
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,216,190
Number of extensions: 1643571
Number of successful extensions: 10540
Number of sequences better than 1.0e-05: 382
Number of HSP's gapped: 8993
Number of HSP's successfully gapped: 818
Length of query: 554
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 446
Effective length of database: 15,274,216
Effective search space: 6812300336
Effective search space used: 6812300336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008294
(1663 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-l... 674 0.0
Alignment gi|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [... 674 0.0
Alignment gi|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [... 561 0.0
Alignment gi|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-l... 486 e-137
Alignment gi|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-l... 404 e-113
Alignment gi|XP_003356374.1| PREDICTED: polyadenylate-binding protein 4-l... 244 7e-97
Alignment gi|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-l... 142 7e-34
Alignment gi|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-l... 142 7e-34
Alignment gi|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Su... 112 5e-25
Alignment gi|XP_001928970.2| PREDICTED: nucleolysin TIAR isoform 1 [Sus s... 110 2e-24
>ref|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa].
Length = 656
Score = 674 bits (1738), Expect(2) = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 297 bits (760), Expect(2) = 0.0
Identities = 160/216 (74%), Positives = 164/216 (75%), Gaps = 5/216 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 495
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTDSCQSGGVPTAVQNL YKYASSVRS
Sbjct: 496 FGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSPHPAIQPL 555
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 556 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 615
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
SELLHMLE P + DEAV VLQAHHA+KE AQK
Sbjct: 616 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 105 bits (261), Expect = 1e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [Sus scrofa].
Length = 644
Score = 674 bits (1738), Expect(2) = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 268 bits (686), Expect(2) = 0.0
Identities = 152/225 (67%), Positives = 156/225 (69%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTG SECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTG----------------SECPDRLAMD 479
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTDSCQSGGVPTAVQNL YKYASSVRS
Sbjct: 480 FGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSPHPAIQPL 539
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 540 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 599
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 600 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 644
Score = 105 bits (261), Expect = 1e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa].
Length = 636
Score = 561 bits (1446), Expect(2) = 0.0
Identities = 275/340 (80%), Positives = 309/340 (90%), Gaps = 1/340 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY FVHFETQEAA++AIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGA+AKEFTNVYIKNFGE++DDE LK+LF +FG LSVKVM D
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVS+E+HEDA KAV+EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+RI+RYQGVNLY+KNLDD IDDE+LRKEFSPFG+ITSAKVM+E GRSKGFGFVCFSSPEE
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA- 897
ATKAVTEMNGRIV +KPLYVALAQRKEER+AHLTNQYMQR+A +RA+P N ++N +QPA
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAP 404
Query: 898 AGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLP 1017
GYF+ A+PQ Q R YY P+Q+AQ+RP+PRW G P
Sbjct: 405 PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARP 444
Score = 135 bits (339), Expect(2) = 0.0
Identities = 98/211 (46%), Positives = 110/211 (52%), Gaps = 5/211 (2%)
Frame = +3
Query: 1017 FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT--TAQRVGSECPDRLAMDFGGAGAAQ 1190
FQ MP AIR + PRP + P AS +P + QRV + + A AA
Sbjct: 447 FQNMPGAIRPAAPRPPFSTMRP-----ASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAA 501
Query: 1191 QGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXXX-- 1364
+ V T Q YKYA+ VR+
Sbjct: 502 --------TPAVRTVPQ------------------YKYAAGVRNPQQHLNAQPQVTMQQP 535
Query: 1365 -VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLH 1541
VHVQGQEPLTASMLA+APP EQKQMLGE PLIQ MH TLAGKITGMLLEI +SELLH
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 1542 MLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
MLE P + DEAV VLQAH A KE AQK
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQA-KEAAQK 625
Score = 179 bits (454), Expect = 4e-45
Identities = 108/282 (38%), Positives = 163/282 (57%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA+V+F+ A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ V + +R+ L + N++IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+GFV +E E A +A+E+MNG ++ + +FVGR + + ER+AEL + ++
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSS 711
N+YIKN + +DDE+L+ F FG S KVM E G+SKGFGFV F
Sbjct: 191 ----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E+A KAV EMNG+ + K +YV AQ+K ER+ L ++ Q
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 105 bits (261), Expect = 1e-22
Identities = 63/196 (32%), Positives = 111/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK + + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+GFV F + E A +A+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-like [Sus scrofa].
Length = 610
Score = 486 bits (1252), Expect = e-137
Identities = 243/340 (71%), Positives = 285/340 (83%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L+ SIDNKALYDTFS FGNILSCKVVCD++GS+G+ FVHFET EAA AI MNGMLLND
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVG FKSR+EREAELGA+A EFTN+Y+KN +VD+ L++LFSQFGK LSVKVMRD
Sbjct: 166 RKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SG S+GFGFV++EKHEDA KAV +MNGKE+SG++++VGRAQK+VERQ ELKR+FEQ+KQ
Sbjct: 226 DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+R++RYQGVNLY+KNLDD+IDDEKLRKEF+P+G ITSAKVM E G SKGFGFVCFSSPEE
Sbjct: 286 DRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVG+KPLYVALAQRKEERKA LTNQY+QR++ MRAL + + + QP +
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTS 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLPS 1020
YF+PAVPQ + PYY Q P PRW PS
Sbjct: 406 --YFLPAVPQPPAQSPYYASGPPVQ--PPPRWTAQPPRPS 441
Score = 171 bits (433), Expect = 1e-42
Identities = 104/282 (36%), Positives = 158/282 (56%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA+++F+ A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + + + G + NV+IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGQPIRI------MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D G S+GFGFV +E HE A A+ MNG ++ + +FVG + + ER+AEL +
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGAR---- 186
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSS 711
+ N+Y+KNL +D+ L+ FS FG I S KVM +D G S+GFGFV F
Sbjct: 187 ------ALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEK 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E+A KAVT+MNG+ V + LYV AQ++ ER+ L ++ Q
Sbjct: 241 HEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 102 bits (254), Expect = 6e-22
Identities = 62/189 (32%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + +V + L E FS G LS++V RD + +S G+ ++++++ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN + I G+ I + +Q+ + R GV N++IKNL+D+ID++
Sbjct: 72 MNFEVIKGQPIRIMWSQR-----------------DPGLRKSGVGNVFIKNLEDSIDNKA 114
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV+ +D S+GFGFV F + E A A+ MNG ++ + ++V +
Sbjct: 115 LYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFK 174
Query: 793 RKEERKAHL 819
+ ER+A L
Sbjct: 175 SRREREAEL 183
Score = 97.1 bits (240), Expect = 3e-20
Identities = 54/85 (63%), Positives = 62/85 (72%)
Frame = +3
Query: 1365 VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLHM 1544
V V QEPLTAS+LAAAP EQKQM+GE PLI MH+ LAGKITGMLLEI +SELL M
Sbjct: 521 VRVPRQEPLTASVLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLLM 580
Query: 1545 LEVPRVSPLQGDEAVXVLQAHHAQK 1619
LE P + +EA+ VLQAH A +
Sbjct: 581 LESPESLSAKVEEALAVLQAHQAME 605
>ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa].
Length = 370
Score = 404 bits (1038), Expect = e-113
Identities = 199/265 (75%), Positives = 234/265 (88%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNK LY+ FSAFG ILS KV+ D+ GS+GYAFVHF+ Q AAD+AIE+MNG LL D
Sbjct: 105 LDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKD 164
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
++FVGRFK+RK+REAEL KA EFTNVYIKNFG+++DDE LKE+FS++GKTLSVKVMRD
Sbjct: 165 CRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRD 224
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVS++ HE A KAVEEMNGK+I+G+++FVGRAQKK ERQAELK+ FEQLK+
Sbjct: 225 SSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKR 284
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ER R QGV LYIKNLD+TIDDEKLR+EFS FGSI+ KVM E+GRSKGFG +CFSSPEE
Sbjct: 285 ERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSPEE 344
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQR 795
ATKA+TEMNGRI+GSKPL +ALAQ+
Sbjct: 345 ATKAMTEMNGRILGSKPLNIALAQK 369
Score = 176 bits (446), Expect = 3e-44
Identities = 109/282 (38%), Positives = 160/282 (56%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + L+ FS G +LS ++ D S GYA+V+F A KA++ MN L+
Sbjct: 17 LHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTMNFDLI 76
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + +R+A L + NV+IKN + +D++ L E FS FGK LS KVM
Sbjct: 77 KGKSIRL----MWSQRDAYL--RKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D G S+G+ FV ++ A++A+EEMNG + +FVGR + + +R+AEL+ K +
Sbjct: 131 SDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNKANEF 189
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSS 711
N+YIKN D +DDE+L++ FS +G S KVM + G+SKGFGFV F S
Sbjct: 190 ----------TNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDS 239
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E A KAV EMNG+ + + L+V AQ+K ER+A L + Q
Sbjct: 240 HEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 281
Score = 100 bits (249), Expect = 2e-21
Identities = 66/201 (32%), Positives = 116/201 (57%), Gaps = 2/201 (0%)
Frame = +1
Query: 232 LGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKH 408
+ AK ++ ++Y+ + +V ++ L + FS G LS+++ RD + +S G+ +V++ +
Sbjct: 3 IAAKYRQ-ASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 409 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKN 585
DA KA++ MN I GK I + +Q R A L++ G+ N++IKN
Sbjct: 62 ADAQKALDTMNFDLIKGKSIRLMWSQ----RDAYLRKS-------------GIGNVFIKN 104
Query: 586 LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 765
LD +ID++ L + FS FG I S+KVM +D S+G+ FV F + A +A+ EMNG ++
Sbjct: 105 LDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKD 164
Query: 766 KPLYVALAQRKEERKAHLTNQ 828
L+V + +++R+A L N+
Sbjct: 165 CRLFVGRFKNRKDREAELQNK 185
>ref|XP_003356374.1| PREDICTED: polyadenylate-binding protein 4-like, partial [Sus
scrofa].
Length = 416
Score = 244 bits (623), Expect(2) = 7e-97
Identities = 118/118 (100%), Positives = 118/118 (100%)
Frame = +1
Query: 658 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ
Sbjct: 1 VMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 60
Query: 838 RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 61 RVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 118
Score = 129 bits (324), Expect(2) = 7e-97
Identities = 72/112 (64%), Positives = 73/112 (65%), Gaps = 5/112 (4%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRPALRHLAPTG SECPDRLAMD
Sbjct: 112 RWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTG----------------SECPDRLAMD 155
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRS 1322
FGGAGAAQQGLTDSCQSGGVPTAVQNL YKYASSVRS
Sbjct: 156 FGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRS 207
Score = 58.9 bits (141), Expect = 8e-09
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = +1
Query: 367 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 531
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K ER+A L ++ Q
Sbjct: 6 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 60
>ref|XP_003135232.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus
scrofa].
Length = 200
Score = 142 bits (357), Expect = 7e-34
Identities = 67/100 (67%), Positives = 82/100 (82%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L K+IDNKALY+ FSAFGNILSCKV CDE G KGY FVHF+ QE+A++AI+ MNGM LN
Sbjct: 97 LGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNY 156
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 300
RK+FVGRFKS KEREAE GA A++ T+ +K+F E+ D+E
Sbjct: 157 RKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 100 bits (248), Expect = 3e-21
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS ++ D+ S GYA+V+++ A +A+E +N ++
Sbjct: 9 LHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVI 68
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
R V + +R+ L + NV+IKN G+ +D++ L +FS FG LS KV
Sbjct: 69 KGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 510
D G KG+GFV ++K E A +A++ MNG ++ + IFVGR + ER+AE
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 95.9 bits (237), Expect = 6e-20
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + EV + L E FS G LS+++ RD + +S G+ +V+Y++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
+N I G+ + + +Q+ + R GV N++IKNL TID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV ++ KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 793 RKEERKA 813
+ER+A
Sbjct: 166 SHKEREA 172
>ref|XP_003360416.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Sus
scrofa].
Length = 200
Score = 142 bits (357), Expect = 7e-34
Identities = 67/100 (67%), Positives = 82/100 (82%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L K+IDNKALY+ FSAFGNILSCKV CDE G KGY FVHF+ QE+A++AI+ MNGM LN
Sbjct: 97 LGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNY 156
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 300
RK+FVGRFKS KEREAE GA A++ T+ +K+F E+ D+E
Sbjct: 157 RKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 100 bits (248), Expect = 3e-21
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS ++ D+ S GYA+V+++ A +A+E +N ++
Sbjct: 9 LHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVI 68
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
R V + +R+ L + NV+IKN G+ +D++ L +FS FG LS KV
Sbjct: 69 KGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 510
D G KG+GFV ++K E A +A++ MNG ++ + IFVGR + ER+AE
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 95.9 bits (237), Expect = 6e-20
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + EV + L E FS G LS+++ RD + +S G+ +V+Y++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
+N I G+ + + +Q+ + R GV N++IKNL TID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV ++ KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 793 RKEERKA 813
+ER+A
Sbjct: 166 SHKEREA 172
>ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa].
Length = 346
Score = 112 bits (281), Expect = 5e-25
Identities = 81/310 (26%), Positives = 151/310 (48%), Gaps = 41/310 (13%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L +++ + L F + G I SCK+V D+ S GY FV++ + A+KAI +NG+ L
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 175 NDR--KVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVK 348
+ KV R S R+A N+Y+ + + + L++LFSQ+G+ ++ +
Sbjct: 106 QTKTIKVSYARPSSASIRDA----------NLYVSGLPKTMTQKELEQLFSQYGRIITSR 155
Query: 349 VMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK-----VIFVGRAQKKVER--- 501
++ D +G S+G GF+ ++K +A +A++ +NG++ G V F +K +
Sbjct: 156 ILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAIL 215
Query: 502 ----------------QAELKRKFEQLKQERISRYQGVNL----------YIKNLDDTID 603
Q + +F + + ++ G+N+ ++ NL D
Sbjct: 216 SQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDAD 275
Query: 604 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 777
+ L + F PFG++T+ KV+ + + KGFGFV ++ +EA A+ +NG +G + L
Sbjct: 276 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 335
Query: 778 VALAQRKEER 807
V+ K +
Sbjct: 336 VSFKTNKTHK 345
Score = 83.6 bits (205), Expect = 3e-16
Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 5/196 (2%)
Frame = +1
Query: 256 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVE 432
TN+ + + + E LK LF G+ S K++RD +G+S G+GFV+Y +DA KA+
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98
Query: 433 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 612
+NG + K I V A+ + + NLY+ L T+ ++
Sbjct: 99 TLNGLRLQTKTIKVSYARPS------------------SASIRDANLYVSGLPKTMTQKE 140
Query: 613 LRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV--GSKPLYV 780
L + FS +G I +++++++ G S+G GF+ F EA +A+ +NG+ ++P+ V
Sbjct: 141 LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
Query: 781 ALAQRKEERKAHLTNQ 828
A ++ TNQ
Sbjct: 201 KFANNPSQK----TNQ 212
>ref|XP_001928970.2| PREDICTED: nucleolysin TIAR isoform 1 [Sus scrofa].
Length = 375
Score = 110 bits (276), Expect = 2e-24
Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 5/258 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L + + + FS G SCK++ + + Y FV F A A+ MNG +
Sbjct: 16 LSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG 75
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
++V V + ++ + +V++ + E+ E++K F+ FGK +V++D
Sbjct: 76 KEVKVNWATTPSSQKKD----TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKD 131
Query: 361 -PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVER-QAELKRKFEQL 534
+GKSKG+GFVS+ DA A+ M G+ + G+ I A +K ++ + +QL
Sbjct: 132 MATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL 191
Query: 535 KQERI---SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCF 705
+ E + S + +Y + + D+ +R+ FSPFG I +V E KG+ FV F
Sbjct: 192 RFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRF 247
Query: 706 SSPEEATKAVTEMNGRIV 759
S+ E A A+ +NG +
Sbjct: 248 STHESAAHAIVSVNGTTI 265
Score = 84.3 bits (207), Expect = 2e-16
Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 2/181 (1%)
Frame = +1
Query: 262 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 441
+Y+ N +V + + +LFSQ G S K++ + + + FV + +H DA A+ MN
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 442 GKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 621
G++I GK + V A ++ + F ++++ +L I E ++
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDTSNHF--------------HVFVGDLSPEITTEDIKS 115
Query: 622 EFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 795
F+PFG I+ A+V+ + G+SKG+GFV F + +A A+ M G+ +G + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 796 K 798
K
Sbjct: 176 K 176
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L I + + F+ FG I +VV D SKGY FV F + A+ AI M G L
Sbjct: 104 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 163
Query: 175 NDRKV---FVGRFKSRKEREAELGAKAKEFTNV-----------YIKNFGEEVDDENLKE 312
R++ + R + E K F +V Y + D+ +++
Sbjct: 164 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ 223
Query: 313 LFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 468
FS FG+ + ++V + KG+ FV + HE A A+ +NG I G V+
Sbjct: 224 TFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 270
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,984,736
Number of extensions: 1023188
Number of successful extensions: 5201
Number of sequences better than 1.0e-05: 96
Number of HSP's gapped: 4900
Number of HSP's successfully gapped: 172
Length of query: 554
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 450
Effective length of database: 8,754,644
Effective search space: 3939589800
Effective search space used: 3939589800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008294
(1663 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus ... 662 0.0
Alignment gi|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus ... 662 0.0
Alignment gi|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]. 562 0.0
Alignment gi|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus ... 486 e-163
Alignment gi|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musc... 492 e-139
Alignment gi|NP_001107551.1| polyadenylate-binding protein 1-like [Mus mu... 452 e-127
Alignment gi|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like ... 366 e-101
Alignment gi|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]. 346 3e-95
Alignment gi|XP_003086944.1| PREDICTED: polyadenylate-binding protein 4-l... 254 2e-67
Alignment gi|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-l... 139 5e-33
>ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus].
Length = 660
Score = 662 bits (1708), Expect(2) = 0.0
Identities = 331/337 (98%), Positives = 334/337 (99%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDD NLKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVSYEKHEDANKAVEEMNGKE+SGK IFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLR+EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPA+AILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 305 bits (782), Expect(2) = 0.0
Identities = 165/225 (73%), Positives = 170/225 (75%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSA+RQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 495
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTDSCQSGGVPTAV NL YKYASSVRS
Sbjct: 496 FGGAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 555
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 556 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 615
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVG VAAA S
Sbjct: 616 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAAATS 660
Score = 103 bits (258), Expect = 3e-22
Identities = 63/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN + GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus].
Length = 615
Score = 662 bits (1708), Expect(2) = 0.0
Identities = 331/337 (98%), Positives = 334/337 (99%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDD NLKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVSYEKHEDANKAVEEMNGKE+SGK IFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 SSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLR+EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPA+AILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPASAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 192 bits (489), Expect(2) = 0.0
Identities = 120/225 (53%), Positives = 125/225 (55%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSA+RQSGPRPALRHLAPTG
Sbjct: 436 RWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTG-------------------------- 469
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
VPTAV NL YKYASSVRS
Sbjct: 470 -------------------VPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 510
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 511 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 570
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVG VAAA S
Sbjct: 571 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAAATS 615
Score = 103 bits (258), Expect = 3e-22
Identities = 63/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN + GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus].
Length = 636
Score = 562 bits (1449), Expect(2) = 0.0
Identities = 276/340 (81%), Positives = 309/340 (90%), Gaps = 1/340 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY FVHFETQEAA++AIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGA+AKEFTNVYIKNFGE++DDE LKELF +FG LSVKVM D
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVS+E+HEDA KAV+EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+RI+RYQGVNLY+KNLDD IDDE+LRKEFSPFG+ITSAKVM+E GRSKGFGFVCFSSPEE
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA- 897
ATKAVTEMNGRIV +KPLYVALAQRKEER+AHLTNQYMQR+A +RA+P N ++N +QPA
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAP 404
Query: 898 AGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLP 1017
GYF+ A+PQ Q R YY P+Q+AQ+RP+PRW G P
Sbjct: 405 PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARP 444
Score = 133 bits (335), Expect(2) = 0.0
Identities = 97/211 (45%), Positives = 110/211 (52%), Gaps = 5/211 (2%)
Frame = +3
Query: 1017 FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT--TAQRVGSECPDRLAMDFGGAGAAQ 1190
FQ MP AIR + PRP + P AS +P + QRV + + A AA
Sbjct: 447 FQNMPGAIRPAAPRPPFSTMRP-----ASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAA 501
Query: 1191 QGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXXX-- 1364
+ V T Q YKYA+ VR+
Sbjct: 502 --------TPAVRTVPQ------------------YKYAAGVRNPQQHLNAQPQVTMQQP 535
Query: 1365 -VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLH 1541
VHVQGQEPLTASMLA+APP EQKQMLGE PLIQ MH +LAGKITGMLLEI +SELLH
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 595
Query: 1542 MLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
MLE P + DEAV VLQAH A KE AQK
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQA-KEAAQK 625
Score = 180 bits (456), Expect = 3e-45
Identities = 108/282 (38%), Positives = 164/282 (58%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA+V+F+ A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ V + +R+ L + N++IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+GFV +E E A +A+E+MNG ++ + +FVGR + + ER+AEL + ++
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSS 711
N+YIKN + +DDE+L++ F FG S KVM E G+SKGFGFV F
Sbjct: 191 ----------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E+A KAV EMNG+ + K +YV AQ+K ER+ L ++ Q
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 105 bits (261), Expect = 1e-22
Identities = 63/196 (32%), Positives = 111/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK + + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+GFV F + E A +A+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus].
Length = 643
Score = 486 bits (1250), Expect(2) = e-163
Identities = 249/348 (71%), Positives = 285/348 (81%), Gaps = 12/348 (3%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LD+SID+K LYDTFSAFGNILSCKVVCDENGSKGY FVHFETQE A++AIEKMNGM LND
Sbjct: 106 LDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
KVFVGRFKSR++R+AELGA+AKEFTNVYIKN GE++DDE L++LF +FG LSVKVM D
Sbjct: 166 HKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK- 537
SGKSKGFGFVS+E+HEDA KAVEEMNGK+++GK I+VGRAQKKVERQ ELK KF Q+K
Sbjct: 226 ESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQ 285
Query: 538 ---------QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGF 690
Q+R R +GVNLY+KNLDD IDDE+LRKEFSPFG+ITSAKV +E GRSKGF
Sbjct: 286 DKHKIERVPQDRSVRCKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGF 345
Query: 691 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPAN 870
GFVCFSSPEEATKAVTEMNG+IV +KPLYVALAQRKEER+AHL+NQYMQR+A A P N
Sbjct: 346 GFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAGP-N 404
Query: 871 AILNQFQPAAG--GYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG 1008
+++ FQPA G GY + A P Q R Y PNQ Q P+ R G
Sbjct: 405 PVVSPFQPAQGPSGYCMTATP-TQSRRAYCAPNQTTQQGPSARGSAHG 451
Score = 108 bits (270), Expect(2) = e-163
Identities = 88/213 (41%), Positives = 104/213 (48%), Gaps = 2/213 (0%)
Frame = +3
Query: 1017 FQGMPSAIRQSGPRPALRHLAPT-GNAPASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQ 1193
FQ M S I S P+ PT A R T+ Q +G P A A A +
Sbjct: 457 FQNMSSTIHPSHTMPSFSTSGPTTSQAIRHRTASTSTQMMG---PHPAAAAAAAAAPATR 513
Query: 1194 GLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXXXVHV 1373
+T + GV Q+ + S+ RS V V
Sbjct: 514 TITQYKYTAGVRNPPQH--------------PNTQPHVSTQRSA-------------VPV 546
Query: 1374 QGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLHMLEV 1553
QG+E LTASMLA+APP QKQMLGE LIQ MH LAGKITGMLLEI + EL HMLE
Sbjct: 547 QGKESLTASMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLES 606
Query: 1554 PRVSPLQGDEAVXVLQAHHAQKETAQK-VGAVA 1649
P + DEA+ VLQAH A KET+QK V +VA
Sbjct: 607 PECLHTKVDEAIAVLQAHQA-KETSQKAVSSVA 638
Score = 180 bits (456), Expect = 3e-45
Identities = 109/282 (38%), Positives = 163/282 (57%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA V+F+ E A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTMNFDVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ V + +R+ L + N+++KN +D + L + FS FG LS KV+
Sbjct: 78 KGKPVRI----MWSQRDPSL--RKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+GFV +E E+A +A+E+MNG ++ +FVGR + + +RQAEL + ++
Sbjct: 132 CDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGARAKEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSS 711
N+YIKNL + +DDE+L+ F FG S KVM E G+SKGFGFV F
Sbjct: 191 ----------TNVYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E+A KAV EMNG+ + K +YV AQ+K ER+ L +++ Q
Sbjct: 241 HEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
Score = 102 bits (255), Expect = 7e-22
Identities = 65/204 (31%), Positives = 112/204 (54%), Gaps = 9/204 (4%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + +V + L E FS G LS++V RD + +S G+ V++++ EDA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDT 71
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN I GK + + +Q+ + R GV N+++KNLD +ID +
Sbjct: 72 MNFDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFVKNLDRSIDSKT 114
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV+ ++ SKG+GFV F + EEA +A+ +MNG + ++V +
Sbjct: 115 LYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFK 174
Query: 793 RKEERKAHL-------TNQYMQRV 843
+ +R+A L TN Y++ +
Sbjct: 175 SRRDRQAELGARAKEFTNVYIKNL 198
>ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus].
Length = 628
Score = 492 bits (1266), Expect = e-139
Identities = 247/339 (72%), Positives = 286/339 (84%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L+K+IDNKALYDTFSAFGNILSCKVV DENGSKG+ FVHFET+EAA++AIEKMNGMLLND
Sbjct: 106 LNKTIDNKALYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKS+KEREAELG KEFTNVYIKNFG+ +DDE L LF +FG+ LSVKVM D
Sbjct: 166 RKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
GKSKGFGFVS+E+HEDA KAV+EMNGKE++GK I+VGRAQKK +R ELK KFEQ+ Q
Sbjct: 226 EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
++ RYQG+NLY+KNLDD IDDE+L+KEFSPFG+ITS KVM E GRSKGFGFVCFSSPEE
Sbjct: 286 DKSIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAV+EMNGRIV +KPLYVALAQRKEER+AHLTNQY+QR+A +R+ P +N +QPA+
Sbjct: 346 ATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSGPNP--VNPYQPAS 403
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLP 1017
Y V AVPQ Q P P+Q+AQ RP+ RW G P
Sbjct: 404 SSYSVAAVPQTQNCVP-CCPSQIAQPRPSARWIAQGSRP 441
Score = 177 bits (449), Expect = 2e-44
Identities = 111/282 (39%), Positives = 161/282 (57%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS+ G ILS +V D S GYA V+FE A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ V + +R+ L + NV+IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGKPVRI----MWSQRDPSL--RRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG GFV +E E A +A+E+MNG ++ + +FVGR + + ER+AEL ++
Sbjct: 132 SDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTGTKEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSS 711
N+YIKN D +DDE L F FG I S KVM E G+SKGFGFV F
Sbjct: 191 ----------TNVYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFER 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E+A KAV EMNG+ + K +YV AQ+K++R L +++ Q
Sbjct: 241 HEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQ 282
Score = 104 bits (260), Expect = 2e-22
Identities = 83/219 (37%), Positives = 103/219 (47%), Gaps = 6/219 (2%)
Frame = +3
Query: 996 AARWETS------FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRL 1157
+ARW F +P AI + PR +L + P+ +S TTA R+ +
Sbjct: 431 SARWIAQGSRPHPFPNVPGAIHPAAPRSSLTTVRPS----SSHVQVTTAHRITN------ 480
Query: 1158 AMDFGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXX 1337
A G + S T V ++ YKYA+ V++
Sbjct: 481 ------TSAQITGQRPAPASSATATPVHSIPQ--------------YKYAAGVQNSQQHL 520
Query: 1338 XXXXXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLE 1517
V +QGQEP TASML AP E KQMLGE PLIQ MH TLAGKITGMLL+
Sbjct: 521 NAQLAQQPAVCIQGQEPWTASMLVTAPQ-EPKQMLGERLFPLIQAMHPTLAGKITGMLLD 579
Query: 1518 I*HSELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
I +SE L MLE P + +EAV LQAH KE AQK
Sbjct: 580 IDNSEPLRMLESPVSRCSRAEEAVATLQAHQV-KEAAQK 617
Score = 102 bits (254), Expect = 9e-22
Identities = 65/189 (34%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + +V + L E FS G LS++V RD + +S G+ V++E+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN I GK + + +Q R L+R GV N++IKNL+ TID++
Sbjct: 72 MNFDVIKGKPVRIMWSQ----RDPSLRRS-------------GVGNVFIKNLNKTIDNKA 114
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV+ ++ SKG GFV F + E A +A+ +MNG ++ + ++V +
Sbjct: 115 LYDTFSAFGNILSCKVVSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 793 RKEERKAHL 819
++ER+A L
Sbjct: 175 SQKEREAEL 183
>ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus].
Length = 607
Score = 452 bits (1164), Expect = e-127
Identities = 224/343 (65%), Positives = 276/343 (80%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L+ SIDNKALYDTFS FG+ILS KVV +E+GS+G+ FVHFET EAA KAI MNGMLLND
Sbjct: 106 LENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVG FKSR++REAELGA+A FTN+Y+KN VD++ L++LFSQFG SVKVMRD
Sbjct: 166 RKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
+G+S+GFGFV++EKHE+A KAV+ MNGKE+SG++++VGRAQK+ ERQ+ELKR+FEQ+KQ
Sbjct: 226 SNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ER +RYQGVNLY+KNLDD+I+DE+L++ FS +G ITSAKVM E SKGFGFVCFSSPEE
Sbjct: 286 ERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVG+KPLYVALAQRKEERKA LTNQY +R P++ +L+ FQ
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR-------PSHPVLSSFQQPT 398
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLPSKEC 1029
Y +PAVPQ+ + YY+ + M+P+PRW P C
Sbjct: 399 -SYLLPAVPQSTAQAVYYSSGSITPMQPDPRWTAQPHGPPSTC 440
Score = 172 bits (435), Expect = 9e-43
Identities = 103/283 (36%), Positives = 162/283 (57%), Gaps = 4/283 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS GNILS +V D S GYA+++F+ A++A++ MN ++
Sbjct: 18 LHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + + G + N++IKN +D++ L + FS FG LS KV+
Sbjct: 78 KGQPIRI------MWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
+ G S+GFGFV +E HE A KA+ MNG ++ + +FVG + + +R+AEL
Sbjct: 132 YNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELG------ 184
Query: 535 KQERISRYQG-VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFS 708
+R G N+Y+KNL +D+++L+ FS FG++ S KVM + +G+S+GFGFV F
Sbjct: 185 -----ARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFE 239
Query: 709 SPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
EEA KAV MNG+ V + LYV AQ++ ER++ L ++ Q
Sbjct: 240 KHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQ 282
Score = 81.3 bits (199), Expect = 2e-15
Identities = 46/87 (52%), Positives = 56/87 (64%)
Frame = +3
Query: 1365 VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLHM 1544
V+V G +PLT SMLAAAP EQKQM+GE LI + L GKITGMLLE+ + ELL +
Sbjct: 518 VYVPGHQPLTVSMLAAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLELDNLELLLL 577
Query: 1545 LEVPRVSPLQGDEAVXVLQAHHAQKET 1625
LE P + +EAV VLQ H + T
Sbjct: 578 LESPESLHAKIEEAVAVLQVHREMEST 604
>ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus].
Length = 370
Score = 366 bits (939), Expect = e-101
Identities = 181/265 (68%), Positives = 216/265 (81%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNK LY+ FS FG I+S KV+ D GSKGY FVH++ + AAD+AIE+MNG LL +
Sbjct: 105 LDKSIDNKTLYEHFSPFGTIMSSKVMTDGEGSKGYGFVHYQDRRAADRAIEEMNGKLLRE 164
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
+FV RFKSRK+REAEL K EFTNVYIKNFG++VDDE L+E+FS++G+TLSVKVM+D
Sbjct: 165 STLFVARFKSRKDREAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKD 224
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
+GKSKGFGFVS++ HE A AVE+MNG++I+G+ IFVGRAQKKVERQAELK FEQ+K+
Sbjct: 225 ATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKK 284
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERI Q LYIKNLDDTIDDE LRKEFS FGSI KVM E G+SKGFG +CF SPE
Sbjct: 285 ERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQSKGFGLICFFSPEA 344
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQR 795
A KA+ EMNGRI+GSKPL +AL Q+
Sbjct: 345 AAKAMAEMNGRILGSKPLNIALGQK 369
Score = 174 bits (442), Expect = 1e-43
Identities = 108/282 (38%), Positives = 159/282 (56%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + + L+ FS G +LS ++ D S GYA+V+F A KA+ MN ++
Sbjct: 17 LHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKALVTMNFDVI 76
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + +R+A L + NV+IKN + +D++ L E FS FG +S KVM
Sbjct: 77 KGKSIRL----MWSQRDACL--RRSGVGNVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVM 130
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D G SKG+GFV Y+ A++A+EEMNGK + +FV R + + +R+AEL+ K +
Sbjct: 131 TDGEG-SKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFKSRKDREAELRDKPTEF 189
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSS 711
N+YIKN D +DDEKLR+ FS +G S KVM + G+SKGFGFV F S
Sbjct: 190 ----------TNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDS 239
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E A AV +MNG+ + + ++V AQ+K ER+A L + Q
Sbjct: 240 HEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQ 281
Score = 108 bits (271), Expect = 1e-23
Identities = 69/192 (35%), Positives = 113/192 (58%), Gaps = 2/192 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + E+V ++ L FS G LS+++ RD S +S G+ +V++ + DA KA+
Sbjct: 11 SLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDAQKALVT 70
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN I GK I + +Q R A L+R GV N++IKNLD +ID++
Sbjct: 71 MNFDVIKGKSIRLMWSQ----RDACLRRS-------------GVGNVFIKNLDKSIDNKT 113
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L + FSPFG+I S+KVM + SKG+GFV + A +A+ EMNG+++ L+VA +
Sbjct: 114 LYEHFSPFGTIMSSKVMTDGEGSKGYGFVHYQDRRAADRAIEEMNGKLLRESTLFVARFK 173
Query: 793 RKEERKAHLTNQ 828
+++R+A L ++
Sbjct: 174 SRKDREAELRDK 185
>ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus].
Length = 381
Score = 346 bits (888), Expect = 3e-95
Identities = 173/267 (64%), Positives = 220/267 (82%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDK+IDN+AL+ FSAFGNILSCKVVCD+NGSKGYA+VHF++ AA++AI MNG+ LN+
Sbjct: 112 LDKTIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNN 171
Query: 181 RKVFVGRFKSRKEREAELGAKAKE-FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 357
R+V+VGRFK +ER AE+ + + FTNV++KNFG+++DDE L +LFS++G T SVKV+R
Sbjct: 172 RQVYVGRFKFPEERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIR 231
Query: 358 DPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 537
D +GKSKGFGFV YE HE A KAV E++GK I GKV+ VGRAQKK+ER AEL+R+FE+LK
Sbjct: 232 DATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLK 291
Query: 538 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPE 717
+ +R GV +YIKNLD+TI+DEKL++EFS FGSI+ AKVM+E G+ KGFG VCFSS E
Sbjct: 292 LKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFE 351
Query: 718 EATKAVTEMNGRIVGSKPLYVALAQRK 798
EA KAV EMNGRI+GSK L+V L Q +
Sbjct: 352 EACKAVDEMNGRIIGSKTLHVTLGQAR 378
Score = 147 bits (370), Expect = 3e-35
Identities = 98/280 (35%), Positives = 148/280 (52%), Gaps = 3/280 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
LD + LY F G + ++ D GY +V+F A+ A+ MN L+
Sbjct: 24 LDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLI 83
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
N K F + +R + G N++IKN + +D+ L LFS FG LS KV+
Sbjct: 84 NG-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKTIDNRALFYLFSAFGNILSCKVV 137
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+ +V ++ AN+A+ MNG ++ + ++VGR + ER AE++ +
Sbjct: 138 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR---- 192
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSS 711
R N+++KN D IDDEKL K FS +G S KV+ + G+SKGFGFV + +
Sbjct: 193 -----ERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYET 247
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 831
E A KAV E++G+ + K L V AQ+K ER A L ++
Sbjct: 248 HEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRF 287
Score = 87.8 bits (216), Expect = 2e-17
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 3/202 (1%)
Frame = +1
Query: 223 EAELGAKAKEFTN--VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSK-GFGFV 393
E K K++ +Y+ + +V ++ L + F G ++ RDP +S G+G+V
Sbjct: 4 EPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYV 63
Query: 394 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL 573
++ DA A+ MN I+GK + +Q +R+ + N+
Sbjct: 64 NFRFPADAEWALNTMNFDLINGKPFRLMWSQP----------------DDRLRKSGVGNI 107
Query: 574 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR 753
+IKNLD TID+ L FS FG+I S KV+ +D SKG+ +V F S A +A+ MNG
Sbjct: 108 FIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGV 167
Query: 754 IVGSKPLYVALAQRKEERKAHL 819
+ ++ +YV + EER A +
Sbjct: 168 RLNNRQVYVGRFKFPEERAAEV 189
>ref|XP_003086944.1| PREDICTED: polyadenylate-binding protein 4-like, partial [Mus
musculus].
Length = 234
Score = 254 bits (648), Expect = 2e-67
Identities = 127/129 (98%), Positives = 127/129 (98%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDD NLKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFG 387
SGKSKGFG
Sbjct: 226 SSGKSKGFG 234
Score = 137 bits (345), Expect = 3e-32
Identities = 85/234 (36%), Positives = 133/234 (56%), Gaps = 3/234 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G +LS +V D S GYA+V+F+ A++A++ MN ++
Sbjct: 18 LHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVM 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + +R+ L + NV+IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGKPIRI----MWSQRDPSL--RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+ FV +E E A+KA+E+MNG ++ + +FVGR + + ER+AEL K ++
Sbjct: 132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 693
N+YIKN + +DD L++ FS FG S KVM + G+SKGFG
Sbjct: 191 ----------TNVYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFG 234
Score = 103 bits (258), Expect = 3e-22
Identities = 63/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN + GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVMKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus].
Length = 229
Score = 139 bits (351), Expect = 5e-33
Identities = 66/100 (66%), Positives = 81/100 (81%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L K+IDNKALY+ FSAFGNILSCKV CDE G KGY FVHF+ QE+A++AI+ +NGM LN
Sbjct: 126 LGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNGMFLNY 185
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 300
RK+FVGRFKS KEREAE GA A++ T+ K+F ++ DDE
Sbjct: 186 RKIFVGRFKSHKEREAERGAWARQSTSADFKDFDDDSDDE 225
Score = 104 bits (259), Expect = 2e-22
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 2/205 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS ++ D+ S GYA+V+++ A +A+E MN ++
Sbjct: 38 LHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALETMNFDVI 97
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
N R V + +R+ L + NV+IKN G+ +D++ L +FS FG LS KV
Sbjct: 98 NGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 151
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D G KG+GFV ++K E A +A++ +NG ++ + IFVGR + ER+AE
Sbjct: 152 CDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE-------- 202
Query: 535 KQERISRYQGVNLYIKNLDDTIDDE 609
Q + K+ DD DDE
Sbjct: 203 --RGAWARQSTSADFKDFDDDSDDE 225
Score = 96.7 bits (239), Expect = 5e-20
Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + EV + L E FS G LS+++ RD + +S G+ +V+Y++ DA +A+E
Sbjct: 32 SLYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALET 91
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN I+G+ + + +Q+ + R GV N++IKNL TID++
Sbjct: 92 MNFDVINGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 134
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV ++ KG+GFV F E A +A+ +NG + + ++V +
Sbjct: 135 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 194
Query: 793 RKEERKA 813
+ER+A
Sbjct: 195 SHKEREA 201
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,666,726
Number of extensions: 1358734
Number of successful extensions: 7016
Number of sequences better than 1.0e-05: 174
Number of HSP's gapped: 6461
Number of HSP's successfully gapped: 349
Length of query: 554
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 448
Effective length of database: 12,433,743
Effective search space: 5570316864
Effective search space used: 5570316864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008294
(1663 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [H... 670 0.0
Alignment gi|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo... 670 0.0
Alignment gi|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [H... 670 0.0
Alignment gi|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]. 561 0.0
Alignment gi|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]. 521 e-177
Alignment gi|NP_001118228.1| polyadenylate-binding protein 1-like [Homo s... 481 e-136
Alignment gi|NP_001108206.2| polyadenylate-binding protein 4-like [Homo s... 401 e-112
Alignment gi|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]. 353 2e-97
Alignment gi|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo... 141 2e-33
Alignment gi|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo... 141 2e-33
>ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens].
Length = 660
Score = 670 bits (1729), Expect(2) = 0.0
Identities = 334/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
P+GKSKGFGFVSYEKHEDANKAVEEMNGKEISGK+IFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 307 bits (786), Expect(2) = 0.0
Identities = 166/225 (73%), Positives = 170/225 (75%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRP LRHLAPTGNAPASRGLPTT QRVGSECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMD 495
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTDSCQSGGVPTAVQNL YKYASSVRS
Sbjct: 496 FGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 555
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 556 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 615
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 616 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 660
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens].
Length = 644
Score = 670 bits (1729), Expect(2) = 0.0
Identities = 334/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
P+GKSKGFGFVSYEKHEDANKAVEEMNGKEISGK+IFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 267 bits (682), Expect(2) = 0.0
Identities = 151/225 (67%), Positives = 155/225 (68%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRP LRHLAPTG SECPDRLAMD
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTG----------------SECPDRLAMD 479
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
FGGAGAAQQGLTDSCQSGGVPTAVQNL YKYASSVRS
Sbjct: 480 FGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 539
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 540 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 599
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 600 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 644
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens].
Length = 631
Score = 670 bits (1729), Expect(2) = 0.0
Identities = 334/337 (99%), Positives = 337/337 (100%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE+LKELFSQFGKTLSVKVMRD
Sbjct: 166 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
P+GKSKGFGFVSYEKHEDANKAVEEMNGKEISGK+IFVGRAQKKVERQAELKRKFEQLKQ
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE
Sbjct: 286 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 405
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 1011
GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR
Sbjct: 406 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGR 442
Score = 231 bits (590), Expect(2) = 0.0
Identities = 137/225 (60%), Positives = 141/225 (62%), Gaps = 5/225 (2%)
Frame = +3
Query: 1002 RWETS-----FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMD 1166
RW+ FQGMPSAIRQSGPRP LRHLAPTGNAPASRGLPTT QRVG
Sbjct: 436 RWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVG---------- 485
Query: 1167 FGGAGAAQQGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXX 1346
VPTAVQNL YKYASSVRS
Sbjct: 486 -------------------VPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPL 526
Query: 1347 XXXXXXVHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*H 1526
VHVQGQEPLTASMLAAAPP EQKQMLGE PLIQTMHS LAGKITGMLLEI +
Sbjct: 527 QAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDN 586
Query: 1527 SELLHMLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGAVAAANS 1661
SELLHMLE P + DEAV VLQAHHA+KE AQKVGAVAAA S
Sbjct: 587 SELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 631
Score = 105 bits (261), Expect = 2e-22
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK I + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+ FV F + E A KA+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens].
Length = 636
Score = 561 bits (1446), Expect(2) = 0.0
Identities = 275/340 (80%), Positives = 309/340 (90%), Gaps = 1/340 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY FVHFETQEAA++AIEKMNGMLLND
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVGRFKSRKEREAELGA+AKEFTNVYIKNFGE++DDE LK+LF +FG LSVKVM D
Sbjct: 166 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVS+E+HEDA KAV+EMNGKE++GK I+VGRAQKKVERQ ELKRKFEQ+KQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+RI+RYQGVNLY+KNLDD IDDE+LRKEFSPFG+ITSAKVM+E GRSKGFGFVCFSSPEE
Sbjct: 286 DRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA- 897
ATKAVTEMNGRIV +KPLYVALAQRKEER+AHLTNQYMQR+A +RA+P N ++N +QPA
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAP 404
Query: 898 AGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLP 1017
GYF+ A+PQ Q R YY P+Q+AQ+RP+PRW G P
Sbjct: 405 PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARP 444
Score = 135 bits (339), Expect(2) = 0.0
Identities = 98/211 (46%), Positives = 110/211 (52%), Gaps = 5/211 (2%)
Frame = +3
Query: 1017 FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT--TAQRVGSECPDRLAMDFGGAGAAQ 1190
FQ MP AIR + PRP + P AS +P + QRV + + A AA
Sbjct: 447 FQNMPGAIRPAAPRPPFSTMRP-----ASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAA 501
Query: 1191 QGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXXX-- 1364
+ V T Q YKYA+ VR+
Sbjct: 502 --------TPAVRTVPQ------------------YKYAAGVRNPQQHLNAQPQVTMQQP 535
Query: 1365 -VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLH 1541
VHVQGQEPLTASMLA+APP EQKQMLGE PLIQ MH TLAGKITGMLLEI +SELLH
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 1542 MLEVPRVSPLQGDEAVXVLQAHHAQKETAQK 1634
MLE P + DEAV VLQAH A KE AQK
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQA-KEAAQK 625
Score = 179 bits (454), Expect = 7e-45
Identities = 108/282 (38%), Positives = 163/282 (57%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA+V+F+ A++A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ V + +R+ L + N++IKN + +D++ L + FS FG LS KV+
Sbjct: 78 KGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+GFV +E E A +A+E+MNG ++ + +FVGR + + ER+AEL + ++
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSS 711
N+YIKN + +DDE+L+ F FG S KVM E G+SKGFGFV F
Sbjct: 191 ----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E+A KAV EMNG+ + K +YV AQ+K ER+ L ++ Q
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 105 bits (261), Expect = 2e-22
Identities = 63/196 (32%), Positives = 111/196 (56%), Gaps = 2/196 (1%)
Frame = +1
Query: 238 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 414
A + ++Y+ + +V + L E FS G LS++V RD + +S G+ +V++++ D
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 415 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLD 591
A +A++ MN I GK + + +Q+ + R GV N++IKNLD
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLD 107
Query: 592 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 771
+ID++ L FS FG+I S KV+ ++ SKG+GFV F + E A +A+ +MNG ++ +
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 167
Query: 772 LYVALAQRKEERKAHL 819
++V + ++ER+A L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens].
Length = 631
Score = 521 bits (1342), Expect(2) = e-177
Identities = 259/339 (76%), Positives = 296/339 (87%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSI+NKALYDT SAFGNILSC VVCDENGSKGY FVHFET EAA++AI+KMNGMLLN
Sbjct: 106 LDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNG 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVG+FKSRKEREAELGA+AKEF NVYIKNFGE++DDE LK+LF +FG LSVKVM D
Sbjct: 166 RKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVS+E+HEDA KAV+EMNGKE++GK I+VGRAQKKVERQ ELKR FEQ+KQ
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+RI+RYQ VNLY+KNLDD IDDE+LRK FSPFG+ITSAKVM+E GRSKGFGFVCFSSPEE
Sbjct: 286 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIV +KPLYVALAQRKEER+A+LTN+YMQR+A +RA+P NQ P +
Sbjct: 346 ATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVP-----NQRAPPS 400
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLP 1017
GYF+ AVPQ Q YY P+Q+A++RP+PRW G P
Sbjct: 401 -GYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARP 438
Score = 119 bits (299), Expect(2) = e-177
Identities = 89/214 (41%), Positives = 107/214 (50%), Gaps = 5/214 (2%)
Frame = +3
Query: 1017 FQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPT--TAQRVGSECPDRLAMDFGGAGAAQ 1190
FQ PSAIR PR + P AS +P + QRV + + A AA
Sbjct: 441 FQNKPSAIRPGAPRVPFSTMRP-----ASSQVPRVMSTQRVANTSTQTVGPRPAAAAAA- 494
Query: 1191 QGLTDSCQSGGVPTAVQNLXXXXXXXXXXXXXXXXYKYASSVRSXXXXXXXXXXXXXX-- 1364
AV+ + YKYA+ VR+
Sbjct: 495 ----------AATPAVRTVPR--------------YKYAAGVRNPQQHRNAQPQVTMQQL 530
Query: 1365 -VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLH 1541
VHVQGQE LTAS LA+APP +QKQMLGE PLIQ MH TLAGKITGMLLEI +SELL+
Sbjct: 531 AVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLY 590
Query: 1542 MLEVPRVSPLQGDEAVXVLQAHHAQKETAQKVGA 1643
MLE P + DEAV VLQAH A++ T + V +
Sbjct: 591 MLESPESLRSKVDEAVAVLQAHQAKEATQKAVNS 624
Score = 174 bits (442), Expect = 2e-43
Identities = 103/282 (36%), Positives = 163/282 (57%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS ++ D +GS YA+V+F+ + A+ A++ MN ++
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVI 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ V + +R+ L + N+++KN + ++++ L + S FG LS V+
Sbjct: 78 KGKPVRI----MWSQRDPSL--RKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVV 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+GFV +E HE A +A+++MNG ++G+ +FVG+ + + ER+AEL + ++
Sbjct: 132 CDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEF 190
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSS 711
N+YIKN + +DDE+L+ F FG S KVM E G+SKGFGFV F
Sbjct: 191 P----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E+A KAV EMNG+ + K +YV AQ+K ER+ L + Q
Sbjct: 241 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 93.2 bits (230), Expect = 6e-19
Identities = 56/189 (29%), Positives = 104/189 (55%), Gaps = 2/189 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + +V + L E FS G LS+++ RD + S + +V+++ +DA A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN I GK + + +Q+ + R GV N+++KNLD +I+++
Sbjct: 72 MNFDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFVKNLDKSINNKA 114
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L S FG+I S V+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V +
Sbjct: 115 LYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 793 RKEERKAHL 819
++ER+A L
Sbjct: 175 SRKEREAEL 183
>ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens].
Length = 614
Score = 481 bits (1238), Expect = e-136
Identities = 239/340 (70%), Positives = 282/340 (82%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L+ SIDNKALYDTFS FGNILSCKV CDE+GS+G+ FVHFET EAA +AI MNGMLLND
Sbjct: 106 LEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLND 165
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
RKVFVG FKSR+EREAELGA+A EFTN+Y+KN +VD++ L++LFSQFGK LSVKVMRD
Sbjct: 166 RKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD 225
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SG S+ FGFV++EKHE+A KAV MNGKE+SG++++ GRAQK+VERQ ELKR+FEQ+KQ
Sbjct: 226 NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ 285
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
+R+ RYQGVNLY+KNLDD+IDD+KLRKEFSP+G ITSAKVM E G SKGFGFVCFSSPEE
Sbjct: 286 DRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEE 345
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA 900
ATKAVTEMNGRIVG+KPLYVALAQRKEERKA LTNQYMQR++ MR L +N +L FQ +
Sbjct: 346 ATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTL-SNPLLGSFQQPS 404
Query: 901 GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRLPS 1020
YF+PA+PQ + YY + +P PRW PS
Sbjct: 405 -SYFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPS 443
Score = 163 bits (412), Expect = 5e-40
Identities = 100/282 (35%), Positives = 155/282 (54%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS +V D S GYA+++F+ A++A++ MN +L
Sbjct: 18 LHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEML 77
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + + + G + N++IKN + +D++ L + FS FG LS KV
Sbjct: 78 KGQPIRI------MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D G S+GFGFV +E HE A +A+ MNG ++ + +FVG + + ER+AEL +
Sbjct: 132 CDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR---- 186
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSS 711
+ N+Y+KNL +D++ L+ FS FG + S KVM ++ G S+ FGFV F
Sbjct: 187 ------ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEK 240
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
EEA KAV MNG+ V + LY AQ++ ER+ L ++ Q
Sbjct: 241 HEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 105 bits (262), Expect = 1e-22
Identities = 57/86 (66%), Positives = 65/86 (75%)
Frame = +3
Query: 1365 VHVQGQEPLTASMLAAAPPPEQKQMLGETFVPLIQTMHSTLAGKITGMLLEI*HSELLHM 1544
VH+ GQEPLTASMLAAAP EQKQM+GE PLI +H+ LAGKITGMLLEI +SELL M
Sbjct: 523 VHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLM 582
Query: 1545 LEVPRVSPLQGDEAVXVLQAHHAQKE 1622
LE P + DEAV VLQAH A ++
Sbjct: 583 LESPESLHAKIDEAVAVLQAHQAMEQ 608
Score = 100 bits (249), Expect = 4e-21
Identities = 60/189 (31%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + +V + L E FS G LS++V RD + +S G+ ++++++ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
MN + + G+ I + +Q+ + R GV N++IKNL+D+ID++
Sbjct: 72 MNFEMLKGQPIRIMWSQR-----------------DPGLRKSGVGNIFIKNLEDSIDNKA 114
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV ++ S+GFGFV F + E A +A+ MNG ++ + ++V +
Sbjct: 115 LYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 793 RKEERKAHL 819
+ ER+A L
Sbjct: 175 SRREREAEL 183
>ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens].
Length = 428
Score = 401 bits (1031), Expect = e-112
Identities = 200/265 (75%), Positives = 232/265 (87%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDNK LY+ FSAFG ILS KV+ D+ GSKGYAFVHF+ Q AAD+AIE+MNG LL
Sbjct: 163 LDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 222
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD 360
KVFVGRFK+RK+REAEL +KA EFTNVYIKNFG ++DDE LK++FS++GKTLSVKVM D
Sbjct: 223 CKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD 282
Query: 361 PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ 540
SGKSKGFGFVS++ HE A KAVEEMNG++I+G++IFVGRAQKKVERQAELK+ FEQLK+
Sbjct: 283 SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKR 342
Query: 541 ERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 720
ERI QGV LYIKNLDDTIDDEKLR EFS FGSI+ KVM E+G+SKGFG +CFSSPE+
Sbjct: 343 ERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPED 402
Query: 721 ATKAVTEMNGRIVGSKPLYVALAQR 795
ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 403 ATKAMTEMNGRILGSKPLSIALAQR 427
Score = 181 bits (459), Expect = 2e-45
Identities = 110/282 (39%), Positives = 161/282 (57%), Gaps = 3/282 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + L+ FS G +LS ++ D+ S GYA+V+F A KA++ MN ++
Sbjct: 75 LHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDII 134
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
+ + + +R+A L + NV+IKN + +D++ L E FS FGK LS KVM
Sbjct: 135 KGKSIRL----MWSQRDAYL--RRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 188
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D G SKG+ FV ++ A++A+EEMNGK + G +FVGR + + +R+AEL+ K +
Sbjct: 189 SDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEF 247
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSS 711
N+YIKN +DDE+L+ FS +G S KVM + G+SKGFGFV F S
Sbjct: 248 ----------TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDS 297
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 837
E A KAV EMNGR + + ++V AQ+K ER+A L + Q
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 110 bits (274), Expect = 5e-24
Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 9/227 (3%)
Frame = +1
Query: 196 GRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGK 372
G+ S K++E + AK + ++Y+ + +V ++ L FS G LS+++ RD + +
Sbjct: 49 GQTHSGKDKEMNVAAKYR-MASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRR 107
Query: 373 SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERIS 552
S G+ +V++ + DA KA++ MN I GK I + +Q R A L+R
Sbjct: 108 SLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQ----RDAYLRRS---------- 153
Query: 553 RYQGV-NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATK 729
G+ N++IKNLD +ID++ L + FS FG I S+KVM +D SKG+ FV F + A +
Sbjct: 154 ---GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADR 210
Query: 730 AVTEMNGRIVGSKPLYVALAQRKEERKAHL-------TNQYMQRVAG 849
A+ EMNG+++ ++V + +++R+A L TN Y++ G
Sbjct: 211 AIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGG 257
>ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens].
Length = 382
Score = 353 bits (907), Expect = 2e-97
Identities = 177/267 (66%), Positives = 222/267 (83%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LDKSIDN+AL+ FSAFGNILSCKVVCD+NGSKGYA+VHF++ AA++AI MNG+ LN+
Sbjct: 113 LDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNN 172
Query: 181 RKVFVGRFKSRKEREAELGAKAKE-FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMR 357
R+V+VGRFK +ER AE+ + + FTNV++KN G+++DDE LKELF ++G T SVKV+R
Sbjct: 173 RQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIR 232
Query: 358 DPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 537
D SGKSKGFGFV YE HE A KAV +++GK I GKV++VGRAQKK+ER AEL+R+FE+L+
Sbjct: 233 DASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
Query: 538 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPE 717
+ SR GV +YIKNLD+TI+DEKL++EFS FGSI+ AKVM+E G+ KGFG VCFSS E
Sbjct: 293 LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFE 352
Query: 718 EATKAVTEMNGRIVGSKPLYVALAQRK 798
EATKAV EMNGRIVGSKPL+V L Q +
Sbjct: 353 EATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 148 bits (373), Expect = 2e-35
Identities = 96/280 (34%), Positives = 150/280 (53%), Gaps = 3/280 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
LD + LY F G + ++ D GY +V+F A+ A+ MN L+
Sbjct: 25 LDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLI 84
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
N K F + +R + G N++IKN + +D+ L LFS FG LS KV+
Sbjct: 85 NG-KPFRLMWSQPDDRLRKSGVG-----NIFIKNLDKSIDNRALFYLFSAFGNILSCKVV 138
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQL 534
D +G SKG+ +V ++ AN+A+ MNG ++ + ++VGR + ER AE++ +
Sbjct: 139 CDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR---- 193
Query: 535 KQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSS 711
R N+++KN+ D IDDEKL++ F +G S KV+ + G+SKGFGFV + +
Sbjct: 194 -----DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYET 248
Query: 712 PEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 831
E A KAV +++G+ + K LYV AQ+K ER A L ++
Sbjct: 249 HEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
Score = 85.5 bits (210), Expect = 1e-16
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 1/187 (0%)
Frame = +1
Query: 262 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSK-GFGFVSYEKHEDANKAVEEM 438
+Y+ + +V ++ L + F G ++ RDP +S G+G+V++ DA A+ M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 439 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 618
N I+GK + +Q +R+ + N++IKNLD +ID+ L
Sbjct: 80 NFDLINGKPFRLMWSQP----------------DDRLRKSGVGNIFIKNLDKSIDNRALF 123
Query: 619 KEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 798
FS FG+I S KV+ +D SKG+ +V F S A +A+ MNG + ++ +YV +
Sbjct: 124 YLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFP 183
Query: 799 EERKAHL 819
EER A +
Sbjct: 184 EERAAEV 190
Score = 50.4 bits (119), Expect = 5e-06
Identities = 24/72 (33%), Positives = 46/72 (63%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
LD++I+++ L + FS+FG+I KV+ + KG+ V F + E A KA+++MNG ++
Sbjct: 309 LDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGS 368
Query: 181 RKVFVGRFKSRK 216
+ + V ++R+
Sbjct: 369 KPLHVTLGQARR 380
>ref|NP_001035971.1| polyadenylate-binding protein 1-like 2 [Homo sapiens].
Length = 200
Score = 141 bits (356), Expect = 2e-33
Identities = 67/100 (67%), Positives = 82/100 (82%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L K+IDNKALY+ FSAFGNILSCKV CDE G KGY FVHF+ QE+A++AI+ MNGM LN
Sbjct: 97 LGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNY 156
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 300
RK+FVGRFKS KEREAE GA A++ T+ +K+F E+ D+E
Sbjct: 157 RKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 99.8 bits (247), Expect = 7e-21
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS ++ D+ S GYA+V+++ A +A+E +N ++
Sbjct: 9 LHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVI 68
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
R V + +R+ L + NV+IKN G+ +D++ L +FS FG LS KV
Sbjct: 69 KGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 510
D G KG+GFV ++K E A +A++ MNG ++ + IFVGR + ER+AE
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 95.5 bits (236), Expect = 1e-19
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + EV + L E FS G LS+++ RD + +S G+ +V+Y++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
+N I G+ + + +Q+ + R GV N++IKNL TID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV ++ KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 793 RKEERKA 813
+ER+A
Sbjct: 166 SHKEREA 172
>ref|NP_001012995.1| polyadenylate-binding protein 1-like 2 [Homo sapiens].
Length = 200
Score = 141 bits (356), Expect = 2e-33
Identities = 67/100 (67%), Positives = 82/100 (82%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLND 180
L K+IDNKALY+ FSAFGNILSCKV CDE G KGY FVHF+ QE+A++AI+ MNGM LN
Sbjct: 97 LGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNY 156
Query: 181 RKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDE 300
RK+FVGRFKS KEREAE GA A++ T+ +K+F E+ D+E
Sbjct: 157 RKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 99.8 bits (247), Expect = 7e-21
Identities = 62/172 (36%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLL 174
L + LY+ FS G ILS ++ D+ S GYA+V+++ A +A+E +N ++
Sbjct: 9 LHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVI 68
Query: 175 NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVM 354
R V + +R+ L + NV+IKN G+ +D++ L +FS FG LS KV
Sbjct: 69 KGRPVRI----MWSQRDPSL--RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 355 RDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAE 510
D G KG+GFV ++K E A +A++ MNG ++ + IFVGR + ER+AE
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAE 173
Score = 95.5 bits (236), Expect = 1e-19
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 2/187 (1%)
Frame = +1
Query: 259 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEE 435
++Y+ + EV + L E FS G LS+++ RD + +S G+ +V+Y++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 436 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-NLYIKNLDDTIDDEK 612
+N I G+ + + +Q+ + R GV N++IKNL TID++
Sbjct: 63 LNFDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNVFIKNLGKTIDNKA 105
Query: 613 LRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 792
L FS FG+I S KV ++ KG+GFV F E A +A+ MNG + + ++V +
Sbjct: 106 LYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 793 RKEERKA 813
+ER+A
Sbjct: 166 SHKEREA 172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,052,955
Number of extensions: 1612341
Number of successful extensions: 8294
Number of sequences better than 1.0e-05: 181
Number of HSP's gapped: 7697
Number of HSP's successfully gapped: 365
Length of query: 554
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 446
Effective length of database: 14,737,052
Effective search space: 6572725192
Effective search space used: 6572725192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008294
(1663 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 547 e-153
Sscrofa_Chr14 349 3e-93
Sscrofa_Chr08 293 2e-76
Sscrofa_Chr03 281 6e-73
Sscrofa_Chr17 90 5e-15
Sscrofa_Chr04 74 3e-10
Sscrofa_ChrX 70 4e-09
>Sscrofa_Chr06
|| Length = 157765593
Score = 547 bits (276), Expect = e-153
Identities = 276/276 (100%)
Strand = Plus / Minus
Query: 656 aggtgatgctggaggatgggagaagcaaagggtttggctttgtttgcttctcatcccctg 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88474421 aggtgatgctggaggatgggagaagcaaagggtttggctttgtttgcttctcatcccctg 88474362
Query: 716 aagaggcaaccaaagcagtcactgagatgaatggacgcatcgtgggctccaagccgctct 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88474361 aagaggcaaccaaagcagtcactgagatgaatggacgcatcgtgggctccaagccgctct 88474302
Query: 776 atgttgccctggcccagagaaaggaagagagaaaggctcacctgaccaaccagtacatgc 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88474301 atgttgccctggcccagagaaaggaagagagaaaggctcacctgaccaaccagtacatgc 88474242
Query: 836 agcgggtggccgggatgagagcgctccccgccaatgccatcctaaatcagttccagcctg 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88474241 agcgggtggccgggatgagagcgctccccgccaatgccatcctaaatcagttccagcctg 88474182
Query: 896 cggcagggggctactttgtgccagcagttccacagg 931
||||||||||||||||||||||||||||||||||||
Sbjct: 88474181 cggcagggggctactttgtgccagcagttccacagg 88474146
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 189 gtttgtgggtagattcaagtctcgaaaagagcgagaagctgagcttggagccaaagccaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88479064 gtttgtgggtagattcaagtctcgaaaagagcgagaagctgagcttggagccaaagccaa 88479005
Query: 249 ggaattcaccaatgtttatatcaaaaactttggagaagaggtggatgatgagaatctgaa 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88479004 ggaattcaccaatgtttatatcaaaaactttggagaagaggtggatgatgagaatctgaa 88478945
Query: 309 agagctcttcagccagtttggtaag 333
|||||||||||||||||||||||||
Sbjct: 88478944 agagctcttcagccagtttggtaag 88478920
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 422 aggctgtggaagagatgaatggaaaagaaatcagtgggaaggtcatttttgtcggccgtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88477781 aggctgtggaagagatgaatggaaaagaaatcagtgggaaggtcatttttgtcggccgtg 88477722
Query: 482 cacagaagaaagtggaacggcaggctgagttaaagcggaaatttgaacagctgaaacagg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88477721 cacagaagaaagtggaacggcaggctgagttaaagcggaaatttgaacagctgaaacagg 88477662
Query: 542 agagaattagtcgctatcagg 562
|||||||||||||||||||||
Sbjct: 88477661 agagaattagtcgctatcagg 88477641
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 1220 aggtgttcccacagctgtgcagaacttagcgcctcgtgctgctgttgctaccgctgctcc 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88472775 aggtgttcccacagctgtgcagaacttagcgcctcgtgctgctgttgctaccgctgctcc 88472716
Query: 1280 tcgggctgttgcaccttacaaatacgcgtccagtgtccgcagccctcaccctgccatcca 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88472715 tcgggctgttgcaccttacaaatacgcgtccagtgtccgcagccctcaccctgccatcca 88472656
Query: 1340 gcctctgcagg 1350
|||||||||||
Sbjct: 88472655 gcctctgcagg 88472645
Score = 238 bits (120), Expect = 8e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 1016 cttccaaggaatgccaagtgctatacgccagtctgggcctcgtccagctcttcgccatct 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88473570 cttccaaggaatgccaagtgctatacgccagtctgggcctcgtccagctcttcgccatct 88473511
Query: 1076 ggctccaactggtaatgctccggcctctcgcggcctccctactaccgctcagagagtcgg 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88473510 ggctccaactggtaatgctccggcctctcgcggcctccctactaccgctcagagagtcgg 88473451
Score = 238 bits (120), Expect = 8e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 71 aggtggtgtgtgatgagaacggctctaagggttatgcctttgtccacttcgagacccaag 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88480411 aggtggtgtgtgatgagaacggctctaagggttatgcctttgtccacttcgagacccaag 88480352
Query: 131 aggctgccgacaaggccatcgagaagatgaacggcatgctcctcaatgaccgcaaagtgt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88480351 aggctgccgacaaggccatcgagaagatgaacggcatgctcctcaatgaccgcaaagtgt 88480292
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 558 tcagggggtgaatctctacattaagaacttggatgacaccattgatgatgagaagttaag 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88476635 tcagggggtgaatctctacattaagaacttggatgacaccattgatgatgagaagttaag 88476576
Query: 618 gaaagagttttctccttttggatcaatcaccagtgctaaggt 659
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88476575 gaaagagttttctccttttggatcaatcaccagtgctaaggt 88476534
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 328 ggtaagaccttaagtgtcaaggtgatgagagatcccagtgggaaatccaaaggctttggc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88478551 ggtaagaccttaagtgtcaaggtgatgagagatcccagtgggaaatccaaaggctttggc 88478492
Query: 388 tttgtgagttacgaaaaacacgaggatgccaataagg 424
|||||||||||||||||||||||||||||||||||||
Sbjct: 88478491 tttgtgagttacgaaaaacacgaggatgccaataagg 88478455
Score = 186 bits (94), Expect = 3e-44
Identities = 128/134 (95%), Gaps = 4/134 (2%)
Strand = Plus / Minus
Query: 1448 aacgtttgttcc-actcatccagaccatgcactcaaccctggctgggaagattacgggga 1506
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 88470609 aacgtttgttcccactcatccagaccatgcactcaaacctggctgggaagattacgggga 88470550
Query: 1507 tgctgctggagatttgac-actcagagctgctgcacatgctggaagtcccccgagtctct 1565
|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 88470549 tgctgctggaga-ttgacaactcagagctgctgcacatgctgg-agtcccccgagtctct 88470492
Query: 1566 ccgcttcaaggtga 1579
||||| ||||||||
Sbjct: 88470491 ccgctccaaggtga 88470478
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 1134 gggtctgagtgcccggaccgcttggctatggactttggtggggctggtgccgcccagcaa 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88472954 gggtctgagtgcccggaccgcttggctatggactttggtggggctggtgccgcccagcaa 88472895
Query: 1194 gggctgactgacagctgccagtctggaggtg 1224
|||||||||||||||||||||||||||||||
Sbjct: 88472894 gggctgactgacagctgccagtctggaggtg 88472864
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 928 caggctcagggaagacctccatattacacacctaaccagttagcacagatgaggcctaat 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88473806 caggctcagggaagacctccatattacacacctaaccagttagcacagatgaggcctaat 88473747
Query: 988 ccacgctggcagcaaggtgggagac 1012
|||||||||||||||||||||||||
Sbjct: 88473746 ccacgctggcagcaaggtgggagac 88473722
Score = 157 bits (79), Expect = 2e-35
Identities = 115/123 (93%), Gaps = 3/123 (2%)
Strand = Plus / Plus
Query: 1458 ccactcatccagaccatgcactcaaccctggctgggaagattacggggatgctgctggag 1517
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 88635146 ccactcatccagaccatgcactcaaacctggctgggaaaattacggggatgctgctggag 88635205
Query: 1518 atttgac-actcagagctgctgcacatgctggaagtcccccgagtctctccgcttcaagg 1576
| ||||| |||| ||||||||||||||||||| ||||||||||||||||| ||| |||||
Sbjct: 88635206 a-ttgacaactcggagctgctgcacatgctgg-agtcccccgagtctctctgctccaagg 88635263
Query: 1577 tga 1579
|||
Sbjct: 88635264 tga 88635266
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 1 ctggacaaatcaatagataacaaggcactttatgatactttttctgcttttggaaacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88481496 ctggacaaatcaatagataacaaggcactttatgatactttttctgcttttggaaacatt 88481437
Query: 61 ctgtcctgcaaggt 74
||||||||||||||
Sbjct: 88481436 ctgtcctgcaaggt 88481423
Score = 145 bits (73), Expect = 9e-32
Identities = 92/101 (91%)
Strand = Plus / Minus
Query: 1347 caggcaccccagcctgcagtccatgtgcaggggcaggagccactgaccgcatccatgctg 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88470804 caggcaccccagcctgcagtccatgtgcaggggcaggagccactgaccgcatccatgctg 88470745
Query: 1407 gccgcagcannnnnnnnagaacagaagcagatgctgggtga 1447
||||||||| |||||||||||||||||||||||
Sbjct: 88470744 gccgcagcacccccccaggaacagaagcagatgctgggtga 88470704
Score = 109 bits (55), Expect = 5e-21
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 1578 gatgaagctgtancggttctacaagctcatcatgcccagaaagaaactgcccaaaaagtg 1637
|||||||||||| |||| ||||| |||||||||||| |||||||| ||||||| || |||
Sbjct: 88470246 gatgaagctgtagcggtcctacaggctcatcatgccaagaaagaagctgcccagaaggtg 88470187
Query: 1638 ggcgctgttgctgctgctaactctta 1663
||||||||||||||||||| ||||||
Sbjct: 88470186 ggcgctgttgctgctgctacctctta 88470161
Score = 101 bits (51), Expect = 1e-18
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1578 gatgaagctgtancggttctacaagctcatcatgcccagaaagaaactgcccaaaaagtg 1637
|||||||||||| |||| ||||| |||||||||||| |||||||| ||||||| || |||
Sbjct: 88635503 gatgaagctgtagcggtcctacaggctcatcatgccaagaaagaagctgcccagaaggtg 88635562
Query: 1638 ggcgctgttgctgctgctaactctta 1663
|||||||||| |||||||| ||||||
Sbjct: 88635563 ggcgctgttgttgctgctacctctta 88635588
>Sscrofa_Chr14
|| Length = 153851969
Score = 349 bits (176), Expect = 3e-93
Identities = 409/480 (85%), Gaps = 20/480 (4%)
Strand = Plus / Minus
Query: 5 acaaatcaatagataacaaggcactttatgatactttttctgcttttggaaacattctgt 64
||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 16308800 acaaatctatagataacaaggcactttaggatactttt-ctgctttgggaaacattctgt 16308742
Query: 65 cctgcaaggtggtgtgtgatgagaacggctctaagggttatgcctttgtccacttcgaga 124
||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||| |||
Sbjct: 16308741 cctgcaaggtggtatgtgatgagaacagctctaagggttatgccctggtccacttc-aga 16308683
Query: 125 cccaagaggctgccgacaaggccatcgagaagatgaacggcatgctcctcaatgaccgca 184
|||||||||||||| || |||||| ||| || |||| ||| |||| || ||||||||||
Sbjct: 16308682 cccaagaggctgccatcagggccattgaggaggtgaagggcgtgcttcttaatgaccgca 16308623
Query: 185 aagtgtttgtgggtagattcaagtctcgaaaagagcgagaag-ctgagcttggagccaaa 243
|||||||||| || ||||||||||||||||||||| |||| | ||||| ||||||||
Sbjct: 16308622 gagtgtttgtgcgtggattcaagtctcgaaaagagcaggaagccagagct--gagccaaa 16308565
Query: 244 gccaaggaattcaccaatgtttatatcaaaaactttggagaagaggtggatgatgagaat 303
||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 16308564 gcccaggaattcactaaagtttatatcaaaaactttgaggaagaggtggatgatgagagt 16308505
Query: 304 ctgaaaga---------gctcttcagccagtttggtaagaccttaagtgtcaaggtgatg 354
| ||||| ||| ||||||||| |||||||||| ||||||||| ||||
Sbjct: 16308504 ttaaaagagctattcgggctattcagccagcttggtaagac----tgtgtcaaggcgatg 16308449
Query: 355 agagatcccagtgggaaatccaaaggc-tttggctttgtgagttac-gaaaaacacgagg 412
||||||| |||||||||| |||||||| |||| ||||||| ||||| |||||||| |||
Sbjct: 16308448 agagatcgcagtgggaaagccaaaggcttttgcctttgtgggttacaaaaaaacacaagg 16308389
Query: 413 atgccaataaggctgtggaagagatgaatggaaaagaaatcagtgggaaggtcatttttg 472
||||| ||||||| ||||||||||| ||| |||||||||||||| | || |||||||
Sbjct: 16308388 atgcccataaggccaaggaagagatgacaggagaagaaatcagtggggaagttatttttg 16308329
Score = 234 bits (118), Expect = 1e-58
Identities = 253/300 (84%), Gaps = 11/300 (3%)
Strand = Plus / Minus
Query: 783 cctggcccagagaaaggaagagagaaaggctcacctgaccaaccagtacatgcagcgggt 842
||||||| |||| ||||||||||| |||| ||||||||||||||| | |||||| ||||
Sbjct: 16308060 cctggcctggagataggaagagagacaggcccacctgaccaaccaggatatgcagtgggt 16308001
Query: 843 ggccgggatgagagcgctccccgccaatgccatcctaaatcagttccagcctgcggcagg 902
|||| ||||||| | ||||| || ||||||||| ||||||||||||||||||| | ||
Sbjct: 16308000 ggccaggatgagcacactccctgcaaatgccatcttaaatcagttccagcctgcagatgg 16307941
Query: 903 gggctactttgtgccagcagttccacaggctcagggaagacctccatattacacacctaa 962
|||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 16307940 cagctactctgtgccagcagtttcacaggctcagggaagatctccatgctacacacctaa 16307881
Query: 963 ccagttagcacagatgaggcctaatccacgctggcagcaaggtgggagacttccttccaa 1022
||| |||||||||||||| ||| | ||| |||||||||||| |||| ||
Sbjct: 16307880 ccatttagcacagatgagtcctcagccatactggcagcaagg-----------cttctaa 16307832
Query: 1023 ggaatgccaagtgctatacgccagtctgggcctcgtccagctcttcgccatctggctcca 1082
||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||
Sbjct: 16307831 ggaatgccaagtgctatacaccagtctgggcctcaaccagctcttcaccatctggctcca 16307772
Score = 204 bits (103), Expect = 1e-49
Identities = 139/151 (92%)
Strand = Plus / Minus
Query: 583 aacttggatgacaccattgatgatgagaagttaaggaaagagttttctccttttggatca 642
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 16308248 aacttggatgacatcattgatgatgagaagttaaggaaagaattttctccttttggatca 16308189
Query: 643 atcaccagtgctaaggtgatgctggaggatgggagaagcaaagggtttggctttgtttgc 702
|||||||||| | ||||||||||| |||||||||| |||||||||||||||| ||| |||
Sbjct: 16308188 atcaccagtgttgaggtgatgctgcaggatgggaggagcaaagggtttggctctgtctgc 16308129
Query: 703 ttctcatcccctgaagaggcaaccaaagcag 733
||||||||| |||||||| ||| |||||||
Sbjct: 16308128 ttctcatcctctgaagagataacaaaagcag 16308098
Score = 123 bits (62), Expect = 3e-25
Identities = 101/114 (88%)
Strand = Plus / Minus
Query: 1136 gtctgagtgcccggaccgcttggctatggactttggtggggctggtgccgcccagcaagg 1195
|||||| ||||| |||| ||||| |||| |||||||||||||||||||| ||| | |||
Sbjct: 16307766 gtctgaatgcccagaccacttggttatgaactttggtggggctggtgccaccctgaaagt 16307707
Query: 1196 gctgactgacagctgccagtctggaggtgttcccacagctgtgcagaacttagc 1249
|||||||||| |||||||||||||||||| ||||| |||||||||||| |||||
Sbjct: 16307706 gctgactgactgctgccagtctggaggtgctcccatagctgtgcagaaattagc 16307653
>Sscrofa_Chr08
|| Length = 148491826
Score = 293 bits (148), Expect = 2e-76
Identities = 472/580 (81%)
Strand = Plus / Plus
Query: 214 aaagagcgagaagctgagcttggagccaaagccaaggaattcaccaatgtttatatcaaa 273
||||| |||||||| |||||| | ||||||||| || |||||||||||||| ||||||
Sbjct: 98134667 aaagatcgagaagcagagcttcaaaacaaagccaatgagttcaccaatgtttacatcaaa 98134726
Query: 274 aactttggagaagaggtggatgatgagaatctgaaagagctcttcagccagtttggtaag 333
||||| ||||| || |||||||||||| ||||| || | |||||| | | ||| ||
Sbjct: 98134727 aacttcggagatgacatggatgatgagagactgaaggaagttttcagcaaatatggcaaa 98134786
Query: 334 accttaagtgtcaaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtg 393
||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 98134787 accttgagtgttaaggtgatgagagattccagtgggaaatccaaaggctttggctttgtg 98134846
Query: 394 agttacgaaaaacacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatc 453
|||| || | || |||| |||||| |||||||| ||||| ||||||||||| || ||
Sbjct: 98134847 agttttgatagccatgaggctgccaaaaaggctgttgaagaaatgaatggaaaggacata 98134906
Query: 454 agtgggaaggtcatttttgtcggccgtgcacagaagaaagtggaacggcaggctgagtta 513
| ||| || | ||||||| ||||| ||||| ||||||| || || ||||||||||||
Sbjct: 98134907 aatggacagctgctttttgtaggccgggcacaaaagaaagcagagcgacaggctgagtta 98134966
Query: 514 aagcggaaatttgaacagctgaaacaggagagaattagtcgctatcagggggtgaatctc 573
|||| | ||||| |||||||||| || || || | || | |||||||| || |||
Sbjct: 98134967 aagcaaatgtttgagcagctgaaacgtgaaaggtttcgccggtgccagggggtaaagctc 98135026
Query: 574 tacattaagaacttggatgacaccattgatgatgagaagttaaggaaagagttttctcct 633
|| ||||||||||||||||| |||||||||||||| || || ||| || |||||| |
Sbjct: 98135027 tatattaagaacttggatgagaccattgatgatgaaaaactacggagggaattttcttca 98135086
Query: 634 tttggatcaatcaccagtgctaaggtgatgctggaggatgggagaagcaaagggtttggc 693
||||||||||| | ||| | |||||| |||| ||| || ||| |||||||||||||||||
Sbjct: 98135087 tttggatcaattagcagagttaaggtaatgcaggaagaagggcgaagcaaagggtttggc 98135146
Query: 694 tttgtttgcttctcatcccctgaagaggcaaccaaagcagtcactgagatgaatggacgc 753
|| | |||||||| || ||||| ||||| || ||||| | |||||||||||||| |||
Sbjct: 98135147 ttgatctgcttctcctctcctgaggaggccactaaagcgatgactgagatgaatggccgc 98135206
Query: 754 atcgtgggctccaagccgctctatgttgccctggcccaga 793
||| ||||||| ||||| ||| || | |||||||||||||
Sbjct: 98135207 atcttgggctctaagccactcaatatcgccctggcccaga 98135246
Score = 293 bits (148), Expect = 2e-76
Identities = 472/580 (81%)
Strand = Plus / Plus
Query: 214 aaagagcgagaagctgagcttggagccaaagccaaggaattcaccaatgtttatatcaaa 273
||||| |||||||| |||||| | ||||||||| || |||||||||||||| ||||||
Sbjct: 98245354 aaagatcgagaagcagagcttcaaaacaaagccaatgagttcaccaatgtttacatcaaa 98245413
Query: 274 aactttggagaagaggtggatgatgagaatctgaaagagctcttcagccagtttggtaag 333
||||| ||||| || |||||||||||| ||||| || | |||||| | | ||| ||
Sbjct: 98245414 aacttcggagatgacatggatgatgagagactgaaggaagttttcagcaaatatggcaaa 98245473
Query: 334 accttaagtgtcaaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtg 393
||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 98245474 accttgagtgttaaggtgatgagagattccagtgggaaatccaaaggctttggctttgtg 98245533
Query: 394 agttacgaaaaacacgaggatgccaataaggctgtggaagagatgaatggaaaagaaatc 453
|||| || | || |||| |||||| |||||||| ||||| ||||||||||| || ||
Sbjct: 98245534 agttttgatagccatgaggctgccaaaaaggctgttgaagaaatgaatggaaaggacata 98245593
Query: 454 agtgggaaggtcatttttgtcggccgtgcacagaagaaagtggaacggcaggctgagtta 513
| ||| || | ||||||| ||||| ||||| ||||||| || || ||||||||||||
Sbjct: 98245594 aatggacagctgctttttgtaggccgggcacaaaagaaagcagagcgacaggctgagtta 98245653
Query: 514 aagcggaaatttgaacagctgaaacaggagagaattagtcgctatcagggggtgaatctc 573
|||| | ||||| |||||||||| || || || | || | |||||||| || |||
Sbjct: 98245654 aagcaaatgtttgagcagctgaaacgtgaaaggtttcgccggtgccagggggtaaagctc 98245713
Query: 574 tacattaagaacttggatgacaccattgatgatgagaagttaaggaaagagttttctcct 633
|| ||||||||||||||||| |||||||||||||| || || ||| || |||||| |
Sbjct: 98245714 tatattaagaacttggatgagaccattgatgatgaaaaactacggagggaattttcttca 98245773
Query: 634 tttggatcaatcaccagtgctaaggtgatgctggaggatgggagaagcaaagggtttggc 693
||||||||||| | ||| | |||||| |||| ||| || ||| |||||||||||||||||
Sbjct: 98245774 tttggatcaattagcagagttaaggtaatgcaggaagaagggcgaagcaaagggtttggc 98245833
Query: 694 tttgtttgcttctcatcccctgaagaggcaaccaaagcagtcactgagatgaatggacgc 753
|| | |||||||| || ||||| ||||| || ||||| | |||||||||||||| |||
Sbjct: 98245834 ttgatctgcttctcctctcctgaggaggccactaaagcgatgactgagatgaatggccgc 98245893
Query: 754 atcgtgggctccaagccgctctatgttgccctggcccaga 793
||| ||||||| ||||| ||| || | |||||||||||||
Sbjct: 98245894 atcttgggctctaagccactcaatatcgccctggcccaga 98245933
>Sscrofa_Chr03
|| Length = 144787322
Score = 281 bits (142), Expect = 6e-73
Identities = 367/437 (83%), Gaps = 11/437 (2%)
Strand = Plus / Minus
Query: 1232 agctgtgcagaacttagcgcctcgtgctgctgttgctaccgctgctcctcgggctgttgc 1291
|||||||||||| ||||||||| |||||||||||||| || ||||| || |||| ||||
Sbjct: 35039364 agctgtgcagaatttagcgccttgtgctgctgttgctgccactgcttctatggctattgc 35039305
Query: 1292 accttacaaatacgcgtccagtgtccgcagccctcaccctgccatccagcctctgcaggc 1351
|||||| |||||| ||||||| |||| |||||||||| |||||||||||| |||||||||
Sbjct: 35039304 accttataaatacacgtccagggtccacagccctcactctgccatccagcttctgcaggc 35039245
Query: 1352 accccagcctgcagtccatgtgcaggggcaggagccactgaccgcatccatgctggcc-- 1409
| |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct: 35039244 atcccagcctgcagtccacgtgcaggggcaggagccggtgaccgcctccatgctggccat 35039185
Query: 1410 -gcagcannnnnnnnagaacagaagcagatgctgggtgaaacgtttgttcc-actcatcc 1467
||| | |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 35039184 tgcatcccgccaccaggaacagaagcagatgctggg-gaaacatttgttcctgttcatcc 35039126
Query: 1468 agaccatgcactcaaccctggctgggaagattacggggatgctgctggagatttgac-ac 1526
||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 35039125 agaccatgcacgcaaacctggctgggaagattacggggatgctgctggaga-ttgacaac 35039067
Query: 1527 tcagagctgctgcacatgctggaagtcccccgagtctctccgcttcaaggtgatgaagct 1586
||||| |||||||||| | || || |||| ||| |||||| | ||| |||||||||
Sbjct: 35039066 tcagaactgctgcacacaccgg-agcccccggagactctcctcccaaagtggatgaagct 35039008
Query: 1587 gtancggttctacaagctcatcatgcccagaaagaaactgcccaaaaagtgggcgctgtt 1646
|| |||| ||||| ||||||||| || ||||| ||||||| || ||||| ||||||
Sbjct: 35039007 gtggcggtcctacaggctcatcat---aaggaagaagctgcccagaaggtgggtgctgtt 35038951
Query: 1647 gctgctgctaactctta 1663
|||||||||| ||||||
Sbjct: 35038950 gctgctgctacctctta 35038934
>Sscrofa_Chr17
|| Length = 69701581
Score = 89.7 bits (45), Expect = 5e-15
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 679 agcaaagggtttggctttgtttgcttctcatcccctgaagaggcaaccaaagcagtcact 738
|||||||||||||||||||| || || || || || |||||||| || || || || ||
Sbjct: 52835068 agcaaagggtttggctttgtgtgtttttcctctccagaagaggcgacgaaggccgtgaca 52835127
Query: 739 gagatgaatggacgcatcgtgggctccaagccgctctatgttgccctggcccagagaaag 798
||||||||||| |||||||||||| ||||||| || ||||| || ||||||||| | ||
Sbjct: 52835128 gagatgaatgggcgcatcgtgggcaccaagccactgtatgtggctctggcccagcgcaaa 52835187
Query: 799 gaagagagaaaggctcacctgaccaaccagtacatgcagcg 839
|| ||| | || || |||||||||||||||||| |||||
Sbjct: 52835188 gaggagcggaaagccatcctgaccaaccagtacattcagcg 52835228
Score = 61.9 bits (31), Expect = 1e-06
Identities = 70/79 (88%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 1485 ctggctgggaagattacggggatgctgctggagatttgac-actcagagctgctgcacat 1543
||||| || ||||| ||||||||||||||||||| ||||| |||| |||||||||| |||
Sbjct: 52845974 ctggccggcaagatcacggggatgctgctggaga-ttgacaactcggagctgctgctcat 52846032
Query: 1544 gctggaagtcccccgagtc 1562
||||| ||||||| |||||
Sbjct: 52846033 gctgg-agtccccggagtc 52846050
>Sscrofa_Chr04
|| Length = 143465943
Score = 73.8 bits (37), Expect = 3e-10
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 200 gattcaagtctcgaaaagagcgagaagctgagcttggagccaaagccaaggaattcacca 259
|||| |||||||| ||||| |||||||| || |||||||| | || || || |||||||
Sbjct: 39140832 gatttaagtctcgtaaagaacgagaagccgaacttggagctagggcaaaagagttcacca 39140891
Query: 260 atgtttatatcaaaaactttggagaagaggtggatgatgag 300
||||||| ||||| || ||||||||||| |||||||||||
Sbjct: 39140892 atgtttacatcaagaattttggagaagacatggatgatgag 39140932
>Sscrofa_ChrX
|| Length = 144288218
Score = 69.9 bits (35), Expect = 4e-09
Identities = 98/119 (82%)
Strand = Plus / Minus
Query: 1 ctggacaaatcaatagataacaaggcactttatgatactttttctgcttttggaaacatt 60
||||||||||| ||||| |||| ||| |||| | || ||||| || ||||| ||||||
Sbjct: 95055049 ctggacaaatccatagacaacagggcccttttttatttattttccgcatttgggaacatt 95054990
Query: 61 ctgtcctgcaaggtggtgtgtgatgagaacggctctaagggttatgcctttgtccactt 119
|| || ||||| || ||||| ||||| |||||||| ||||||||||||| ||| |||||
Sbjct: 95054989 ctctcttgcaaagtcgtgtgcgatgacaacggctccaagggttatgcctatgtgcactt 95054931
Score = 67.9 bits (34), Expect = 2e-08
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 340 agtgtcaaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttac 399
||||| ||||| || |||||| ||||||||||||| ||||||||||| |||||||| ||
Sbjct: 95054707 agtgttaaggtaattagagatgccagtgggaaatcaaaaggctttggatttgtgaggtat 95054648
Query: 400 gaaaaacacgaggatgccaataaggctgtg 429
|| | ||| |||| |||| | |||||||||
Sbjct: 95054647 gagacacatgaggctgcccaaaaggctgtg 95054618
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,337,359
Number of extensions: 522
Number of successful extensions: 522
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 33
Length of query: 1663
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1641
Effective length of database: 2,808,408,574
Effective search space: 4608598469934
Effective search space used: 4608598469934
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)