Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008298
(1012 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001099092.1| DNA-directed RNA polymerase I subunit RPA43 ... 393 e-112
>ref|NP_001099092.1| DNA-directed RNA polymerase I subunit RPA43 [Bos taurus].
Length = 331
Score = 393 bits (1010), Expect(3) = e-112
Identities = 191/207 (92%), Positives = 201/207 (97%)
Frame = +1
Query: 58 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 237
MAAGCS A RPKAASEGP AGVLPCLELPTYAAACALV+SRYSCLVAGPHRRHIALS
Sbjct: 1 MAAGCSVAPRPKAASEGP----AGVLPCLELPTYAAACALVNSRYSCLVAGPHRRHIALS 56
Query: 238 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 417
PRYLN+KRTGIREQL+AELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF
Sbjct: 57 PRYLNKKRTGIREQLNAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 116
Query: 418 VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE 597
VIFCPEPGQKLMGT+NKVSSSHIGCLVHGCFNASIPKPEQMPA+QWQTL+INVGDELEFE
Sbjct: 117 VIFCPEPGQKLMGTVNKVSSSHIGCLVHGCFNASIPKPEQMPADQWQTLQINVGDELEFE 176
Query: 598 VFRLDSDAAGVFCIRGKVNVSSLQTKC 678
VFRLDSDAAGVFCIRGK++++SLQTKC
Sbjct: 177 VFRLDSDAAGVFCIRGKLSIASLQTKC 203
Score = 32.3 bits (72), Expect(3) = e-112
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +2
Query: 797 TELTDFVDVTIKEETDSQINNIVNGLLXXXXXXXXXXXXXXXXXQDQNLVFQG 955
TE DF +V K+E D ++N VNGL QDQ VFQG
Sbjct: 243 TEPEDFAEVATKDEADLHVSNSVNGL--WEEEPKKKKKKKKQEHQDQEPVFQG 293
Score = 21.9 bits (45), Expect(3) = e-112
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 937 EPCFSGNDSSG*KS 978
EP F G+DSSG +S
Sbjct: 288 EPVFQGSDSSGYQS 301
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,301,621
Number of extensions: 712278
Number of successful extensions: 2654
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2639
Number of HSP's successfully gapped: 3
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008298
(1012 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853598.1| PREDICTED: similar to TWIST neighbor [Canis fam... 372 e-103
>ref|XP_853598.1| PREDICTED: similar to TWIST neighbor [Canis familiaris].
Length = 423
Score = 372 bits (956), Expect = e-103
Identities = 183/206 (88%), Positives = 191/206 (92%)
Frame = +1
Query: 61 AAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALSP 240
A+ + PKAASEGP AGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALSP
Sbjct: 84 ASAVGASPPPKAASEGP----AGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALSP 139
Query: 241 RYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFV 420
RYL+RKRTGIREQLDAELLRYSESL GVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFV
Sbjct: 140 RYLHRKRTGIREQLDAELLRYSESLSGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFV 199
Query: 421 IFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFEV 600
IFCPEPG+KLMG +NKVSSSHIGCLVHGCFNASIPKPEQM EQWQ LEINVGDELEFEV
Sbjct: 200 IFCPEPGKKLMGIVNKVSSSHIGCLVHGCFNASIPKPEQMSTEQWQILEINVGDELEFEV 259
Query: 601 FRLDSDAAGVFCIRGKVNVSSLQTKC 678
FRLDSDAAGVFCIRGK+N++SLQTKC
Sbjct: 260 FRLDSDAAGVFCIRGKLNITSLQTKC 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,471,971
Number of extensions: 717034
Number of successful extensions: 2716
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2710
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008298
(1012 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357513.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 424 e-131
Alignment gi|NP_001230885.1| TWIST neighbor [Sus scrofa]. 424 e-131
Alignment gi|XP_003130244.2| PREDICTED: DNA-directed RNA polymerase I sub... 271 5e-73
>ref|XP_003357513.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA43-like [Sus scrofa].
Length = 338
Score = 424 bits (1090), Expect(2) = e-131
Identities = 207/207 (100%), Positives = 207/207 (100%)
Frame = +1
Query: 58 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 237
MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS
Sbjct: 1 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 60
Query: 238 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 417
PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF
Sbjct: 61 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 120
Query: 418 VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE 597
VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE
Sbjct: 121 VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE 180
Query: 598 VFRLDSDAAGVFCIRGKVNVSSLQTKC 678
VFRLDSDAAGVFCIRGKVNVSSLQTKC
Sbjct: 181 VFRLDSDAAGVFCIRGKVNVSSLQTKC 207
Score = 62.8 bits (151), Expect(2) = e-131
Identities = 34/53 (64%), Positives = 35/53 (66%)
Frame = +2
Query: 797 TELTDFVDVTIKEETDSQINNIVNGLLXXXXXXXXXXXXXXXXXQDQNLVFQG 955
TELTDFVDVTIKEETDSQINNIVNGLL QDQ+ VFQG
Sbjct: 247 TELTDFVDVTIKEETDSQINNIVNGLLEKEPKKKKKKKKKHQEDQDQDPVFQG 299
>ref|NP_001230885.1| TWIST neighbor [Sus scrofa].
Length = 335
Score = 424 bits (1090), Expect(2) = e-131
Identities = 207/207 (100%), Positives = 207/207 (100%)
Frame = +1
Query: 58 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 237
MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS
Sbjct: 1 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 60
Query: 238 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 417
PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF
Sbjct: 61 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 120
Query: 418 VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE 597
VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE
Sbjct: 121 VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE 180
Query: 598 VFRLDSDAAGVFCIRGKVNVSSLQTKC 678
VFRLDSDAAGVFCIRGKVNVSSLQTKC
Sbjct: 181 VFRLDSDAAGVFCIRGKVNVSSLQTKC 207
Score = 62.8 bits (151), Expect(2) = e-131
Identities = 34/53 (64%), Positives = 35/53 (66%)
Frame = +2
Query: 797 TELTDFVDVTIKEETDSQINNIVNGLLXXXXXXXXXXXXXXXXXQDQNLVFQG 955
TELTDFVDVTIKEETDSQINNIVNGLL QDQ+ VFQG
Sbjct: 247 TELTDFVDVTIKEETDSQINNIVNGLLEKEPKKKKKKKKKHQEDQDQDPVFQG 299
>ref|XP_003130244.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA43-like [Sus
scrofa].
Length = 166
Score = 271 bits (692), Expect = 5e-73
Identities = 132/132 (100%), Positives = 132/132 (100%)
Frame = +1
Query: 58 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 237
MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS
Sbjct: 1 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 60
Query: 238 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 417
PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF
Sbjct: 61 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 120
Query: 418 VIFCPEPGQKLM 453
VIFCPEPGQKLM
Sbjct: 121 VIFCPEPGQKLM 132
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,654,804
Number of extensions: 478775
Number of successful extensions: 1729
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1728
Number of HSP's successfully gapped: 5
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008298
(1012 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_758457.1| DNA-directed RNA polymerase I subunit RPA43 [Mu... 366 e-101
>ref|NP_758457.1| DNA-directed RNA polymerase I subunit RPA43 [Mus musculus].
Length = 330
Score = 366 bits (939), Expect = e-101
Identities = 178/206 (86%), Positives = 191/206 (92%)
Frame = +1
Query: 58 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 237
MAAG E+ R +AASE P G AGVLPCLELP+YAAACALV SRYSCLVA PHRRHIALS
Sbjct: 1 MAAGSVESQRSQAASERPVAGQAGVLPCLELPSYAAACALVGSRYSCLVAAPHRRHIALS 60
Query: 238 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 417
PRYL+RKRTGIREQLDAELLRYSESLLGVPIAYDNI+VVGELGDIYDDQGHIHLNIEADF
Sbjct: 61 PRYLSRKRTGIREQLDAELLRYSESLLGVPIAYDNIRVVGELGDIYDDQGHIHLNIEADF 120
Query: 418 VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE 597
VIFCPEPGQ LMGT+NKVSSSHIGCLVHGCFNASIPKPEQM E+WQTLEI+VGDELEF+
Sbjct: 121 VIFCPEPGQTLMGTVNKVSSSHIGCLVHGCFNASIPKPEQMSYEEWQTLEIHVGDELEFD 180
Query: 598 VFRLDSDAAGVFCIRGKVNVSSLQTK 675
VFRLDSD+AGVFCIRGK++ +SLQ K
Sbjct: 181 VFRLDSDSAGVFCIRGKLSTTSLQLK 206
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,359,618
Number of extensions: 593584
Number of successful extensions: 2067
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2067
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008298
(1012 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002926.1| DNA-directed RNA polymerase I subunit RPA43 ... 388 e-108
>ref|NP_001002926.1| DNA-directed RNA polymerase I subunit RPA43 [Homo sapiens].
Length = 338
Score = 388 bits (997), Expect = e-108
Identities = 188/206 (91%), Positives = 198/206 (96%)
Frame = +1
Query: 58 MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALS 237
MAAGCSEA RP AAS+G VG AGVLPCLELPTYAAACALV+SRYSCLVAGPH+RHIALS
Sbjct: 1 MAAGCSEAPRPAAASDGSLVGQAGVLPCLELPTYAAACALVNSRYSCLVAGPHQRHIALS 60
Query: 238 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 417
PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF
Sbjct: 61 PRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADF 120
Query: 418 VIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFE 597
VIFCPEPGQKLMG +NKVSSSHIGCLVHGCFNASIPKPEQ+ AEQWQT+EIN+GDELEFE
Sbjct: 121 VIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFNASIPKPEQLSAEQWQTMEINMGDELEFE 180
Query: 598 VFRLDSDAAGVFCIRGKVNVSSLQTK 675
VFRLDSDAAGVFCIRGK+N++SLQ K
Sbjct: 181 VFRLDSDAAGVFCIRGKLNITSLQFK 206
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 30,955,167
Number of extensions: 702589
Number of successful extensions: 2609
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2608
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008298
(1012 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 617 e-174
>Sscrofa_Chr09
|| Length = 153670197
Score = 617 bits (311), Expect = e-174
Identities = 311/311 (100%)
Strand = Plus / Minus
Query: 1 taggcggttaatgactgcgtcagtaggacgcgcgccgtgggaagcctgacgagcctcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97900157 taggcggttaatgactgcgtcagtaggacgcgcgccgtgggaagcctgacgagcctcatg 97900098
Query: 61 gctgcgggttgctcagaggcttcacggccaaaggcggcctcggaagggccgggggtggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97900097 gctgcgggttgctcagaggcttcacggccaaaggcggcctcggaagggccgggggtggga 97900038
Query: 121 ccggccggtgtcttgccttgcctagagctgccgacctatgcggccgcttgtgcgctggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97900037 ccggccggtgtcttgccttgcctagagctgccgacctatgcggccgcttgtgcgctggtg 97899978
Query: 181 agcagccgctactcctgcctcgtggcggggccgcaccggagacacatcgcattgtcgccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97899977 agcagccgctactcctgcctcgtggcggggccgcaccggagacacatcgcattgtcgccg 97899918
Query: 241 cgctaccttaacaggaaacgcaccggtatccgagaacagctggatgcagaactcctacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97899917 cgctaccttaacaggaaacgcaccggtatccgagaacagctggatgcagaactcctacgt 97899858
Query: 301 tattccgagag 311
|||||||||||
Sbjct: 97899857 tattccgagag 97899847
Score = 617 bits (311), Expect = e-174
Identities = 311/311 (100%)
Strand = Plus / Minus
Query: 1 taggcggttaatgactgcgtcagtaggacgcgcgccgtgggaagcctgacgagcctcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98006833 taggcggttaatgactgcgtcagtaggacgcgcgccgtgggaagcctgacgagcctcatg 98006774
Query: 61 gctgcgggttgctcagaggcttcacggccaaaggcggcctcggaagggccgggggtggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98006773 gctgcgggttgctcagaggcttcacggccaaaggcggcctcggaagggccgggggtggga 98006714
Query: 121 ccggccggtgtcttgccttgcctagagctgccgacctatgcggccgcttgtgcgctggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98006713 ccggccggtgtcttgccttgcctagagctgccgacctatgcggccgcttgtgcgctggtg 98006654
Query: 181 agcagccgctactcctgcctcgtggcggggccgcaccggagacacatcgcattgtcgccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98006653 agcagccgctactcctgcctcgtggcggggccgcaccggagacacatcgcattgtcgccg 98006594
Query: 241 cgctaccttaacaggaaacgcaccggtatccgagaacagctggatgcagaactcctacgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98006593 cgctaccttaacaggaaacgcaccggtatccgagaacagctggatgcagaactcctacgt 98006534
Query: 301 tattccgagag 311
|||||||||||
Sbjct: 98006533 tattccgagag 98006523
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Minus
Query: 453 gggtacaattaataaagtgtcttccagccatattggctgtttagtacatgggtgcttcaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97879538 gggtacaattaataaagtgtcttccagccatattggctgtttagtacatgggtgcttcaa 97879479
Query: 513 tgcctccattcctaaacccgagcagatgccagctgagcagtggcagactctggagataaa 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97879478 tgcctccattcctaaacccgagcagatgccagctgagcagtggcagactctggagataaa 97879419
Query: 573 tgtgggtgatgaactagaatttgaagtatttcgcttagactcagacgctgctggagtatt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97879418 tgtgggtgatgaactagaatttgaagtatttcgcttagactcagacgctgctggagtatt 97879359
Query: 633 ctgcattcgtgggaaagtaaatgtttctag 662
||||||||||||||||||||||||||||||
Sbjct: 97879358 ctgcattcgtgggaaagtaaatgtttctag 97879329
Score = 416 bits (210), Expect = e-113
Identities = 210/210 (100%)
Strand = Plus / Minus
Query: 453 gggtacaattaataaagtgtcttccagccatattggctgtttagtacatgggtgcttcaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97986170 gggtacaattaataaagtgtcttccagccatattggctgtttagtacatgggtgcttcaa 97986111
Query: 513 tgcctccattcctaaacccgagcagatgccagctgagcagtggcagactctggagataaa 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97986110 tgcctccattcctaaacccgagcagatgccagctgagcagtggcagactctggagataaa 97986051
Query: 573 tgtgggtgatgaactagaatttgaagtatttcgcttagactcagacgctgctggagtatt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97986050 tgtgggtgatgaactagaatttgaagtatttcgcttagactcagacgctgctggagtatt 97985991
Query: 633 ctgcattcgtgggaaagtaaatgtttctag 662
||||||||||||||||||||||||||||||
Sbjct: 97985990 ctgcattcgtgggaaagtaaatgtttctag 97985961
Score = 309 bits (156), Expect = 2e-81
Identities = 200/218 (91%), Gaps = 1/218 (0%)
Strand = Plus / Minus
Query: 660 tagtttacaaaccaaatgccctgctattcctgaagtaacagaaactgccaccgaagaagc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97878025 tagtttacaaaccaaatgccctgctattcctgaagtaacagaaactgccaccgaagaagc 97877966
Query: 720 ggctgttgagaaacctccaaagnnnnnnnnnnnnnngaagaagaacccagagccatgtga 779
|||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 97877965 ggctgttgagaaacctccaaagaagaaaaagaaaaagaagacagacccagagccatgtga 97877906
Query: 780 agcagaagatggtacccacagagctaacagattttgttgatgttaccattaaggaagaga 839
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97877905 agcagaagatggtacc-acagagctaacagattttgttgatgttaccattaaggaagaga 97877847
Query: 840 cagatagccagattaataacattgtaaacggtctcttg 877
||||||||||||||||||||||||||||||||||||||
Sbjct: 97877846 cagatagccagattaataacattgtaaacggtctcttg 97877809
Score = 309 bits (156), Expect = 2e-81
Identities = 200/218 (91%), Gaps = 1/218 (0%)
Strand = Plus / Minus
Query: 660 tagtttacaaaccaaatgccctgctattcctgaagtaacagaaactgccaccgaagaagc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97984657 tagtttacaaaccaaatgccctgctattcctgaagtaacagaaactgccaccgaagaagc 97984598
Query: 720 ggctgttgagaaacctccaaagnnnnnnnnnnnnnngaagaagaacccagagccatgtga 779
|||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 97984597 ggctgttgagaaacctccaaagaagaaaaagaaaaagaagacagacccagagccatgtga 97984538
Query: 780 agcagaagatggtacccacagagctaacagattttgttgatgttaccattaaggaagaga 839
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97984537 agcagaagatggtacc-acagagctaacagattttgttgatgttaccattaaggaagaga 97984479
Query: 840 cagatagccagattaataacattgtaaacggtctcttg 877
||||||||||||||||||||||||||||||||||||||
Sbjct: 97984478 cagatagccagattaataacattgtaaacggtctcttg 97984441
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 310 agccttttaggtgtacccattgcctatgataacatcaaagtagtgggtgaactaggagat 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97893806 agccttttaggtgtacccattgcctatgataacatcaaagtagtgggtgaactaggagat 97893747
Query: 370 atttatgatgatcaaggacacattcatcttaacattgaagcagattttgttattttctgc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97893746 atttatgatgatcaaggacacattcatcttaacattgaagcagattttgttattttctgc 97893687
Query: 430 cctgaaccagggcaaaagcttatgg 454
|||||||||||||||||||||||||
Sbjct: 97893686 cctgaaccagggcaaaagcttatgg 97893662
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 310 agccttttaggtgtacccattgcctatgataacatcaaagtagtgggtgaactaggagat 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98001207 agccttttaggtgtacccattgcctatgataacatcaaagtagtgggtgaactaggagat 98001148
Query: 370 atttatgatgatcaaggacacattcatcttaacattgaagcagattttgttattttctgc 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98001147 atttatgatgatcaaggacacattcatcttaacattgaagcagattttgttattttctgc 98001088
Query: 430 cctgaaccagggcaaaagcttatgg 454
|||||||||||||||||||||||||
Sbjct: 98001087 cctgaaccagggcaaaagcttatgg 98001063
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,932,833
Number of extensions: 123
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 10
Length of query: 1012
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 991
Effective length of database: 2,808,413,156
Effective search space: 2783137437596
Effective search space used: 2783137437596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)