Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008302
(906 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776782.1| interleukin-1 receptor antagonist protein precu... 287 1e-77
Alignment gi|NP_001069243.1| interleukin-1 family member 5 [Bos taurus]. 128 6e-30
Alignment gi|NP_001180014.1| interleukin-1 family member 10 [Bos taurus]. 102 3e-22
Alignment gi|XP_002691444.1| PREDICTED: interleukin 1 family, member 10-l... 102 3e-22
Alignment gi|XP_002691396.1| PREDICTED: interleukin 1 family, member 8-li... 69 6e-12
Alignment gi|XP_002700827.1| PREDICTED: interleukin 1 family, member 8-li... 69 6e-12
Alignment gi|XP_002691394.1| PREDICTED: interleukin 1 family, member 9-li... 66 5e-11
Alignment gi|XP_002691393.1| PREDICTED: interleukin 1 family, member 9-li... 66 5e-11
Alignment gi|XP_002700826.1| PREDICTED: interleukin 1 family, member 9-li... 66 5e-11
Alignment gi|XP_872748.4| PREDICTED: interleukin 1 family, member 9-like ... 66 5e-11
>ref|NP_776782.1| interleukin-1 receptor antagonist protein precursor [Bos taurus].
Length = 174
Score = 287 bits (734), Expect = 1e-77
Identities = 135/159 (84%), Positives = 144/159 (90%)
Frame = +3
Query: 117 LIALETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVE 296
L ETACHPLGKR C MQAFRIWDVNQK FYLRNNQLVAGYLQGPNTKLEEKIDVVP+E
Sbjct: 16 LFRSETACHPLGKRRCEMQAFRIWDVNQKIFYLRNNQLVAGYLQGPNTKLEEKIDVVPIE 75
Query: 297 PHFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFE 476
PH +FLGIHGGKLCL+CVKSGDE+KL+LE VNITDL +N EQDKRF FIR D+GPTTSFE
Sbjct: 76 PHTMFLGIHGGKLCLACVKSGDEIKLKLEAVNITDLNQNREQDKRFAFIRFDNGPTTSFE 135
Query: 477 SAACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQD 593
SAACPGWFLCT+LEADQPVGLTN P A+KVTKFYFQQD
Sbjct: 136 SAACPGWFLCTSLEADQPVGLTNMPTEALKVTKFYFQQD 174
>ref|NP_001069243.1| interleukin-1 family member 5 [Bos taurus].
Length = 155
Score = 128 bits (322), Expect = 6e-30
Identities = 74/148 (50%), Positives = 92/148 (62%), Gaps = 10/148 (6%)
Frame = +3
Query: 177 FRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVP-------VEPHFVFLGIHGGKL 335
FR+ D K YL +NQL+AG LQ E+I VVP + P V LG+HGG
Sbjct: 9 FRMKDAALKVLYLHDNQLLAGGLQAGKVIKGEEISVVPNRSLDAKLSP--VILGVHGGSQ 66
Query: 336 CLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTAL 515
CLSC +G E L+LEPVNI +L ++E+ K+FTF R D+G T+SFESAA PGWFLCT
Sbjct: 67 CLSC-GTGQEPTLKLEPVNIMELYHSAEKSKKFTFYRRDTGLTSSFESAAYPGWFLCTVP 125
Query: 516 EADQPVGLTNTPKAAV---KVTKFYFQQ 590
EADQP+ +T PK + FYFQQ
Sbjct: 126 EADQPLQITQLPKDTSWDNPIIDFYFQQ 153
>ref|NP_001180014.1| interleukin-1 family member 10 [Bos taurus].
Length = 152
Score = 102 bits (255), Expect = 3e-22
Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Frame = +3
Query: 183 IWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVE-----PHFVFLGIHGGKLCLSC 347
I D QK Y+R+ Q + G N E I ++P +FLG+ GG CL+C
Sbjct: 12 IKDAEQKALYMRDGQFLVGDPNADNCHAET-ICILPNRGLERTKFPIFLGVQGGSRCLAC 70
Query: 348 VKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTALEADQ 527
V++G+ LQLE VNI DL K E+ RFTF + SGP E+AA PGWFL + E Q
Sbjct: 71 VETGEGPSLQLEDVNIEDLYKGGEEATRFTFFQRSSGPAFRLEAAAWPGWFLSGSSEPQQ 130
Query: 528 PVGLTNTPKAAVKVTKFYFQQDQ 596
P+ LT + + + T+FYF+Q +
Sbjct: 131 PLRLTKESEPSAR-TEFYFEQSR 152
>ref|XP_002691444.1| PREDICTED: interleukin 1 family, member 10-like [Bos taurus].
Length = 152
Score = 102 bits (255), Expect = 3e-22
Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Frame = +3
Query: 183 IWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVE-----PHFVFLGIHGGKLCLSC 347
I D QK Y+R+ Q + G N E I ++P +FLG+ GG CL+C
Sbjct: 12 IKDAEQKALYMRDGQFLVGDPNADNCHAET-ICILPNRGLERTKFPIFLGVQGGSRCLAC 70
Query: 348 VKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTALEADQ 527
V++G+ LQLE VNI DL K E+ RFTF + SGP E+AA PGWFL + E Q
Sbjct: 71 VETGEGPSLQLEDVNIEDLYKGGEEATRFTFFQRSSGPAFRLEAAAWPGWFLSGSSEPQQ 130
Query: 528 PVGLTNTPKAAVKVTKFYFQQDQ 596
P+ LT + + + T+FYF+Q +
Sbjct: 131 PLRLTKESEPSAR-TEFYFEQSR 152
>ref|XP_002691396.1| PREDICTED: interleukin 1 family, member 8-like [Bos taurus].
Length = 158
Score = 68.9 bits (167), Expect = 6e-12
Identities = 38/97 (39%), Positives = 53/97 (54%)
Frame = +3
Query: 297 PHFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFE 476
PH+ LGI LCL C + LQL+ NI +L + +K F F R+D G T F+
Sbjct: 62 PHY--LGIKDKNLCLYCTEIQGYPTLQLKEENIMNLYNKPKGEKCFLFYRNDEGSTVVFQ 119
Query: 477 SAACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQ 587
S + PGWF+ T+ EA PV LT + V+ T +Y +
Sbjct: 120 SVSYPGWFIATSSEAGHPVTLTK-ERGTVQSTNYYLE 155
>ref|XP_002700827.1| PREDICTED: interleukin 1 family, member 8-like [Bos taurus].
Length = 158
Score = 68.9 bits (167), Expect = 6e-12
Identities = 38/97 (39%), Positives = 53/97 (54%)
Frame = +3
Query: 297 PHFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFE 476
PH+ LGI LCL C + LQL+ NI +L + +K F F R+D G T F+
Sbjct: 62 PHY--LGIKDKNLCLYCTEIQGYPTLQLKEENIMNLYNKPKGEKCFLFYRNDEGSTVVFQ 119
Query: 477 SAACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQ 587
S + PGWF+ T+ EA PV LT + V+ T +Y +
Sbjct: 120 SVSYPGWFIATSSEAGHPVTLTK-ERGTVQSTNYYLE 155
>ref|XP_002691394.1| PREDICTED: interleukin 1 family, member 9-like isoform 2 [Bos
taurus].
Length = 174
Score = 65.9 bits (159), Expect = 5e-11
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +3
Query: 306 VFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAA 485
++LGI ++CL C G + +LQL+ I DL +E K F F R +G T++FES A
Sbjct: 72 IYLGIKQPEMCLCCEDVGGKPELQLKNQKIMDLYNQAEPVKPFLFYRQSTGSTSTFESVA 131
Query: 486 CPGWFLCTALEADQPVGLTN 545
PGWF+ ++ E +QP+ LT+
Sbjct: 132 FPGWFIASS-ERNQPIFLTS 150
>ref|XP_002691393.1| PREDICTED: interleukin 1 family, member 9-like isoform 1 [Bos
taurus].
Length = 174
Score = 65.9 bits (159), Expect = 5e-11
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +3
Query: 306 VFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAA 485
++LGI ++CL C G + +LQL+ I DL +E K F F R +G T++FES A
Sbjct: 72 IYLGIKQPEMCLCCEDVGGKPELQLKNQKIMDLYNQAEPVKPFLFYRQSTGSTSTFESVA 131
Query: 486 CPGWFLCTALEADQPVGLTN 545
PGWF+ ++ E +QP+ LT+
Sbjct: 132 FPGWFIASS-ERNQPIFLTS 150
>ref|XP_002700826.1| PREDICTED: interleukin 1 family, member 9-like [Bos taurus].
Length = 174
Score = 65.9 bits (159), Expect = 5e-11
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +3
Query: 306 VFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAA 485
++LGI ++CL C G + +LQL+ I DL +E K F F R +G T++FES A
Sbjct: 72 IYLGIKQPEMCLCCEDVGGKPELQLKNQKIMDLYNQAEPVKPFLFYRQSTGSTSTFESVA 131
Query: 486 CPGWFLCTALEADQPVGLTN 545
PGWF+ ++ E +QP+ LT+
Sbjct: 132 FPGWFIASS-ERNQPIFLTS 150
>ref|XP_872748.4| PREDICTED: interleukin 1 family, member 9-like isoform 2 [Bos
taurus].
Length = 174
Score = 65.9 bits (159), Expect = 5e-11
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +3
Query: 306 VFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAA 485
++LGI ++CL C G + +LQL+ I DL +E K F F R +G T++FES A
Sbjct: 72 IYLGIKQPEMCLCCEDVGGKPELQLKNQKIMDLYNQAEPVKPFLFYRQSTGSTSTFESVA 131
Query: 486 CPGWFLCTALEADQPVGLTN 545
PGWF+ ++ E +QP+ LT+
Sbjct: 132 FPGWFIASS-ERNQPIFLTS 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,191,683
Number of extensions: 1108995
Number of successful extensions: 4406
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4379
Number of HSP's successfully gapped: 15
Length of query: 302
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 200
Effective length of database: 14,306,398
Effective search space: 2861279600
Effective search space used: 2861279600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008302
(906 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003096.1| interleukin-1 receptor antagonist protein pr... 284 7e-77
Alignment gi|XP_854686.1| PREDICTED: similar to Interleukin 1 family memb... 120 2e-27
Alignment gi|XP_854689.1| PREDICTED: similar to Interleukin 1 family memb... 110 2e-24
Alignment gi|XP_540183.2| PREDICTED: similar to interleukin 1 family, mem... 62 1e-09
Alignment gi|NP_001033060.1| interleukin-1 beta [Canis lupus familiaris]. 50 2e-06
>ref|NP_001003096.1| interleukin-1 receptor antagonist protein precursor [Canis lupus
familiaris].
Length = 176
Score = 284 bits (727), Expect = 7e-77
Identities = 134/155 (86%), Positives = 143/155 (92%)
Frame = +3
Query: 129 ETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEPHFV 308
ETAC PLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQG NTKLEEK+DVVPVEPH V
Sbjct: 22 ETACRPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGSNTKLEEKLDVVPVEPHAV 81
Query: 309 FLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAAC 488
FLGIHGGKLCL+CVKSGDE +LQLE VNITDL KN +QDKRFTFI SDSGPTTSFESAAC
Sbjct: 82 FLGIHGGKLCLACVKSGDETRLQLEAVNITDLSKNKDQDKRFTFILSDSGPTTSFESAAC 141
Query: 489 PGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQD 593
PGWFLCTALEAD+PV LTN P+ A+ VTKFYFQ++
Sbjct: 142 PGWFLCTALEADRPVSLTNRPEEAMMVTKFYFQKE 176
>ref|XP_854686.1| PREDICTED: similar to Interleukin 1 family member 5 (IL-1F5)
(Interleukin-1 delta) (IL-1 delta) (FIL1 delta)
(Interleukin-1-like protein 1) (IL-1L1) (Interleukin-1
HY1) (IL-1HY1) (Interleukin-1 receptor antagonist
homolog 1) (IL-1ra homolog 1) (IL-1 related p... [Canis
familiaris].
Length = 155
Score = 120 bits (301), Expect = 2e-27
Identities = 72/148 (48%), Positives = 89/148 (60%), Gaps = 10/148 (6%)
Frame = +3
Query: 177 FRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVP-------VEPHFVFLGIHGGKL 335
FR+ D K YL +NQL+AG L E+I VVP + P V LG+ GG
Sbjct: 9 FRMKDAALKVLYLHDNQLLAGGLHAGKVIKGEEISVVPNRSLDAKLSP--VILGVQGGSQ 66
Query: 336 CLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTAL 515
CLSC +G E L+LEPVNI +L +++ K FTF R D+G T+SFESAA PGWFLCT
Sbjct: 67 CLSC-GTGQEPTLKLEPVNIMELYLGAKESKSFTFYRRDTGLTSSFESAAYPGWFLCTVP 125
Query: 516 EADQPVGLTNTPKAAV---KVTKFYFQQ 590
EADQP+ LT + A +T FYFQQ
Sbjct: 126 EADQPLRLTQLSEDASWDNPITDFYFQQ 153
>ref|XP_854689.1| PREDICTED: similar to Interleukin 1 family member 10 (IL-1F10)
(Interleukin-1 receptor antagonist-like FIL1 theta)
(Interleukin-1 theta) (IL-1 theta) (FIL1 theta)
(Interleukin-1 HY2) (IL-1HY2) [Canis familiaris].
Length = 152
Score = 110 bits (275), Expect = 2e-24
Identities = 67/151 (44%), Positives = 84/151 (55%), Gaps = 7/151 (4%)
Frame = +3
Query: 165 RMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTK--LEEKIDVVPVEPHF-----VFLGIH 323
R +RI D +QK YLR +QL+ G PN EKI ++P +FLGI
Sbjct: 6 RFCPWRIKDADQKALYLRGDQLLVG---DPNVDNCCAEKICILPNRGLDRTKVPIFLGIQ 62
Query: 324 GGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFL 503
GG CLSCV++G+ LQLE VNI DL K EQ RFTF + SG E+AA PGWFL
Sbjct: 63 GGSRCLSCVETGEGPTLQLEDVNIEDLYKGGEQATRFTFFQRSSGSAFKLEAAAWPGWFL 122
Query: 504 CTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
C E QPV L + + T+FYF+Q +
Sbjct: 123 CGPAEPQQPVQLVKESEPLAR-TEFYFEQSR 152
>ref|XP_540183.2| PREDICTED: similar to interleukin 1 family, member 8 isoform 2
[Canis familiaris].
Length = 183
Score = 61.6 bits (148), Expect = 1e-09
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 9/194 (4%)
Frame = +3
Query: 177 FRIWDVNQKTFYLRNNQLVAG---------YLQGPNTKLEEKIDVVPVEPHFVFLGIHGG 329
F ++D Q + L+ N L+A +L +E D P V+LGI G
Sbjct: 13 FGVYDSLQMVWVLKENSLIATPFSRNVKPVHLDLTTCTDKEFHDAGKGNP--VYLGIKGH 70
Query: 330 KLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCT 509
LCL C + + LQL+ I D+ + + K F F S G T+ F+S + P WF+ T
Sbjct: 71 HLCLFCAEIQGQPSLQLKEKKIMDMYREKKAQKPFLFFHSREGSTSVFQSVSYPDWFIGT 130
Query: 510 ALEADQPVGLTNTPKAAVKVTKFYFQQDQ*CCPASLPLFPRSLTSEMPLHPAWGLLGLSR 689
+ PV LT + T FY + P LP HP G G
Sbjct: 131 SKMVGHPVILTK-ERGKNHNTNFYLE------PEDLP------------HPEIG--GEEV 169
Query: 690 VALTQNSQEGIQGP 731
V + + +EG + P
Sbjct: 170 VVVKEEDEEGQEKP 183
>ref|NP_001033060.1| interleukin-1 beta [Canis lupus familiaris].
Length = 265
Score = 50.4 bits (119), Expect = 2e-06
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Frame = +3
Query: 180 RIWDVNQKTFYLRNN-QLVAGYLQGPNTKLE-----------EKIDVVPVEPHFVFLGIH 323
++ D++ K L N+ +L A +L G N + E + +PV LGI
Sbjct: 122 KLQDISHKYLVLSNSYELRALHLNGENVNKQVVFHMSFVHGDESNNKIPV-----VLGIK 176
Query: 324 GGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFL 503
L LSCV + LQLE V+ K + +KRF F + + T FES+ P W++
Sbjct: 177 QKNLYLSCVMKDGKPTLQLEKVDPKVYPKR-KMEKRFVFNKIEIKNTVEFESSQYPNWYI 235
Query: 504 CTALEADQPVGLTNT 548
T+ PV L NT
Sbjct: 236 STSQVEGMPVFLGNT 250
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,599,453
Number of extensions: 1140081
Number of successful extensions: 4321
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4300
Number of HSP's successfully gapped: 5
Length of query: 302
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 200
Effective length of database: 15,474,232
Effective search space: 3094846400
Effective search space used: 3094846400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008302
(906 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999427.1| interleukin-1 receptor antagonist protein precu... 324 5e-89
Alignment gi|NP_001005149.1| interleukin-1 beta [Sus scrofa]. 56 3e-08
Alignment gi|NP_999220.1| interleukin-1 beta precursor [Sus scrofa]. 53 3e-07
>ref|NP_999427.1| interleukin-1 receptor antagonist protein precursor [Sus scrofa].
Length = 177
Score = 324 bits (830), Expect = 5e-89
Identities = 155/166 (93%), Positives = 158/166 (95%)
Frame = +3
Query: 99 VFYQALLIALETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKI 278
+ + L ETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKI
Sbjct: 12 ISFLLFLFHSETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKI 71
Query: 279 DVVPVEPHFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSG 458
DVVPVEPHFVFLGIHGGKLCLSCVKSGDEMKLQL+ VNITDLRKNSEQDKRFTFIRSDSG
Sbjct: 72 DVVPVEPHFVFLGIHGGKLCLSCVKSGDEMKLQLDAVNITDLRKNSEQDKRFTFIRSDSG 131
Query: 459 PTTSFESAACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
PTTSFESAACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ
Sbjct: 132 PTTSFESAACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 177
>ref|NP_001005149.1| interleukin-1 beta [Sus scrofa].
Length = 267
Score = 55.8 bits (133), Expect = 3e-08
Identities = 35/91 (38%), Positives = 47/91 (51%)
Frame = +3
Query: 306 VFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAA 485
V LGI G L LSCV D LQLE V+ K + +KRF F +++ FESA
Sbjct: 172 VTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKR-DMEKRFVFYKTEIKNRVEFESAL 230
Query: 486 CPGWFLCTALEADQPVGLTNTPKAAVKVTKF 578
P W++ T+ +PV L N+ K +T F
Sbjct: 231 YPNWYISTSQAEQKPVFLGNS-KGRQDITDF 260
>ref|NP_999220.1| interleukin-1 beta precursor [Sus scrofa].
Length = 267
Score = 52.8 bits (125), Expect = 3e-07
Identities = 33/91 (36%), Positives = 47/91 (51%)
Frame = +3
Query: 306 VFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAA 485
V LGI G L LSCV + LQLE ++ K + +KRF F +++ FESA
Sbjct: 172 VTLGIKGKNLYLSCVMKDNTPTLQLEDIDPKRYPKR-DMEKRFVFYKTEIKNRVEFESAL 230
Query: 486 CPGWFLCTALEADQPVGLTNTPKAAVKVTKF 578
P W++ T+ +PV L N+ K +T F
Sbjct: 231 YPNWYISTSQAEQKPVFLGNS-KGRQDITDF 260
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,049,031
Number of extensions: 720629
Number of successful extensions: 2711
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2691
Number of HSP's successfully gapped: 3
Length of query: 302
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,904,026
Effective search space: 1816421304
Effective search space used: 1816421304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008302
(906 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034790.1| interleukin-1 receptor antagonist protein is... 275 3e-74
Alignment gi|NP_112444.1| interleukin-1 receptor antagonist protein isofo... 275 3e-74
Alignment gi|NP_001153034.1| interleukin-1 receptor antagonist protein is... 274 8e-74
Alignment gi|NP_001139560.1| interleukin-36 receptor antagonist protein [... 119 3e-27
Alignment gi|NP_001139559.1| interleukin-36 receptor antagonist protein [... 119 3e-27
Alignment gi|NP_062324.2| interleukin-36 receptor antagonist protein [Mus... 119 3e-27
Alignment gi|NP_694717.1| interleukin-1 family member 10 [Mus musculus]. 105 5e-23
Alignment gi|NP_081439.1| interleukin-36 beta [Mus musculus]. 62 5e-10
Alignment gi|NP_062323.1| interleukin-36 alpha [Mus musculus]. 59 7e-09
Alignment gi|NP_032387.1| interleukin-1 beta precursor [Mus musculus]. 55 7e-08
>ref|NP_001034790.1| interleukin-1 receptor antagonist protein isoform 2 [Mus musculus].
Length = 178
Score = 275 bits (704), Expect = 3e-74
Identities = 128/161 (79%), Positives = 141/161 (87%)
Frame = +3
Query: 114 LLIALETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPV 293
LL E AC P GKRPC+MQAFRIWD NQKTFYLRNNQL+AGYLQGPN KLEEKID+VP+
Sbjct: 18 LLFHSEAACRPSGKRPCKMQAFRIWDTNQKTFYLRNNQLIAGYLQGPNIKLEEKIDMVPI 77
Query: 294 EPHFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSF 473
+ H VFLGIHGGKLCLSC KSGD++KLQLE VNITDL KN E+DKRFTFIRS+ GPTTSF
Sbjct: 78 DLHSVFLGIHGGKLCLSCAKSGDDIKLQLEEVNITDLSKNKEEDKRFTFIRSEKGPTTSF 137
Query: 474 ESAACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
ESAACPGWFLCT LEAD+PV LTNTP+ + VTKFYFQ+DQ
Sbjct: 138 ESAACPGWFLCTTLEADRPVSLTNTPEEPLIVTKFYFQEDQ 178
>ref|NP_112444.1| interleukin-1 receptor antagonist protein isoform 1 [Mus musculus].
Length = 159
Score = 275 bits (703), Expect = 3e-74
Identities = 127/159 (79%), Positives = 141/159 (88%)
Frame = +3
Query: 120 IALETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEP 299
+A E AC P GKRPC+MQAFRIWD NQKTFYLRNNQL+AGYLQGPN KLEEKID+VP++
Sbjct: 1 MASEAACRPSGKRPCKMQAFRIWDTNQKTFYLRNNQLIAGYLQGPNIKLEEKIDMVPIDL 60
Query: 300 HFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFES 479
H VFLGIHGGKLCLSC KSGD++KLQLE VNITDL KN E+DKRFTFIRS+ GPTTSFES
Sbjct: 61 HSVFLGIHGGKLCLSCAKSGDDIKLQLEEVNITDLSKNKEEDKRFTFIRSEKGPTTSFES 120
Query: 480 AACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
AACPGWFLCT LEAD+PV LTNTP+ + VTKFYFQ+DQ
Sbjct: 121 AACPGWFLCTTLEADRPVSLTNTPEEPLIVTKFYFQEDQ 159
>ref|NP_001153034.1| interleukin-1 receptor antagonist protein isoform 3 [Mus musculus].
Length = 162
Score = 274 bits (700), Expect = 8e-74
Identities = 126/156 (80%), Positives = 139/156 (89%)
Frame = +3
Query: 129 ETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEPHFV 308
E AC P GKRPC+MQAFRIWD NQKTFYLRNNQL+AGYLQGPN KLEEKID+VP++ H V
Sbjct: 7 EAACRPSGKRPCKMQAFRIWDTNQKTFYLRNNQLIAGYLQGPNIKLEEKIDMVPIDLHSV 66
Query: 309 FLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAAC 488
FLGIHGGKLCLSC KSGD++KLQLE VNITDL KN E+DKRFTFIRS+ GPTTSFESAAC
Sbjct: 67 FLGIHGGKLCLSCAKSGDDIKLQLEEVNITDLSKNKEEDKRFTFIRSEKGPTTSFESAAC 126
Query: 489 PGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
PGWFLCT LEAD+PV LTNTP+ + VTKFYFQ+DQ
Sbjct: 127 PGWFLCTTLEADRPVSLTNTPEEPLIVTKFYFQEDQ 162
>ref|NP_001139560.1| interleukin-36 receptor antagonist protein [Mus musculus].
Length = 156
Score = 119 bits (298), Expect = 3e-27
Identities = 72/148 (48%), Positives = 87/148 (58%), Gaps = 10/148 (6%)
Frame = +3
Query: 177 FRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVP-------VEPHFVFLGIHGGKL 335
FR+ D K YL NNQL+AG L E+I VVP + P V LG+ GG
Sbjct: 10 FRMKDSALKVLYLHNNQLLAGGLHAEKVIKGEEISVVPNRALDASLSP--VILGVQGGSQ 67
Query: 336 CLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTAL 515
CLSC + L+LEPVNI +L +++ K FTF R D G T+SFESAA PGWFLCT+
Sbjct: 68 CLSCGTEKGPI-LKLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTSP 126
Query: 516 EADQPVGLTNTPKAA---VKVTKFYFQQ 590
EADQPV LT P+ +T FYFQQ
Sbjct: 127 EADQPVRLTQIPEDPAWDAPITDFYFQQ 154
>ref|NP_001139559.1| interleukin-36 receptor antagonist protein [Mus musculus].
Length = 156
Score = 119 bits (298), Expect = 3e-27
Identities = 72/148 (48%), Positives = 87/148 (58%), Gaps = 10/148 (6%)
Frame = +3
Query: 177 FRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVP-------VEPHFVFLGIHGGKL 335
FR+ D K YL NNQL+AG L E+I VVP + P V LG+ GG
Sbjct: 10 FRMKDSALKVLYLHNNQLLAGGLHAEKVIKGEEISVVPNRALDASLSP--VILGVQGGSQ 67
Query: 336 CLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTAL 515
CLSC + L+LEPVNI +L +++ K FTF R D G T+SFESAA PGWFLCT+
Sbjct: 68 CLSCGTEKGPI-LKLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTSP 126
Query: 516 EADQPVGLTNTPKAA---VKVTKFYFQQ 590
EADQPV LT P+ +T FYFQQ
Sbjct: 127 EADQPVRLTQIPEDPAWDAPITDFYFQQ 154
>ref|NP_062324.2| interleukin-36 receptor antagonist protein [Mus musculus].
Length = 156
Score = 119 bits (298), Expect = 3e-27
Identities = 72/148 (48%), Positives = 87/148 (58%), Gaps = 10/148 (6%)
Frame = +3
Query: 177 FRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVP-------VEPHFVFLGIHGGKL 335
FR+ D K YL NNQL+AG L E+I VVP + P V LG+ GG
Sbjct: 10 FRMKDSALKVLYLHNNQLLAGGLHAEKVIKGEEISVVPNRALDASLSP--VILGVQGGSQ 67
Query: 336 CLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTAL 515
CLSC + L+LEPVNI +L +++ K FTF R D G T+SFESAA PGWFLCT+
Sbjct: 68 CLSCGTEKGPI-LKLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTSP 126
Query: 516 EADQPVGLTNTPKAA---VKVTKFYFQQ 590
EADQPV LT P+ +T FYFQQ
Sbjct: 127 EADQPVRLTQIPEDPAWDAPITDFYFQQ 154
>ref|NP_694717.1| interleukin-1 family member 10 [Mus musculus].
Length = 152
Score = 105 bits (262), Expect = 5e-23
Identities = 61/143 (42%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Frame = +3
Query: 183 IWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEPHF-----VFLGIHGGKLCLSC 347
I D +QK Y RN QL+ G N EK+ ++P +FLG+ GG CL+C
Sbjct: 12 IKDAHQKALYTRNGQLLLGDPDSDNYS-PEKVCILPNRGLDRSKVPIFLGMQGGSCCLAC 70
Query: 348 VKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTALEADQ 527
VK+ + LQLE VNI DL K EQ RFTF + G E+AACPGWFLC E Q
Sbjct: 71 VKTREGPLLQLEDVNIEDLYKGGEQTTRFTFFQRSLGSAFRLEAAACPGWFLCGPAEPQQ 130
Query: 528 PVGLTNTPKAAVKVTKFYFQQDQ 596
PV LT + + T+FYF+ +
Sbjct: 131 PVQLTKESEPSTH-TEFYFEMSR 152
>ref|NP_081439.1| interleukin-36 beta [Mus musculus].
Length = 183
Score = 62.4 bits (150), Expect = 5e-10
Identities = 35/99 (35%), Positives = 51/99 (51%)
Frame = +3
Query: 300 HFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFES 479
+ VFLGI LC CV+ + LQL+ V+I +L K + K F F G T+ F+S
Sbjct: 86 NLVFLGIKNRNLCFCCVEMEGKPTLQLKEVDIMNLYKERKAQKAFLFYHGIEGSTSVFQS 145
Query: 480 AACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
PGWF+ T+ Q + LT+ V T FY + ++
Sbjct: 146 VLYPGWFIATSSIERQTIILTHQRGKLVN-TNFYIESEK 183
>ref|NP_062323.1| interleukin-36 alpha [Mus musculus].
Length = 160
Score = 58.5 bits (140), Expect = 7e-09
Identities = 29/78 (37%), Positives = 41/78 (52%)
Frame = +3
Query: 309 FLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAAC 488
++G+ CL C K G++ LQL NI ++ E K F SG T++FESAA
Sbjct: 66 YMGVQRPMSCLFCTKDGEQPVLQLGEGNIMEMYNKKEPVKASLFYHKKSGTTSTFESAAF 125
Query: 489 PGWFLCTALEADQPVGLT 542
PGWF+ + P+ LT
Sbjct: 126 PGWFIAVCSKGSCPLILT 143
>ref|NP_032387.1| interleukin-1 beta precursor [Mus musculus].
Length = 269
Score = 55.1 bits (131), Expect = 7e-08
Identities = 45/136 (33%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Frame = +3
Query: 159 PCRMQAFRIWDVNQKTFYLRNN-QLVAGYLQGPNTKLEE--KIDVVPVEPHF----VFLG 317
P R +R+ D QK+ L + +L A +L G N + + V EP V LG
Sbjct: 119 PIRQLHYRLRDEQQKSLVLSDPYELKALHLNGQNINQQVIFSMSFVQGEPSNDKIPVALG 178
Query: 318 IHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGW 497
+ G L LSCV LQLE V+ K + +KRF F + + FESA P W
Sbjct: 179 LKGKNLYLSCVMKDGTPTLQLESVDPKQYPKK-KMEKRFVFNKIEVKSKVEFESAEFPNW 237
Query: 498 FLCTALEADQPVGLTN 545
++ T+ +PV L N
Sbjct: 238 YISTSQAEHKPVFLGN 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,930,138
Number of extensions: 919814
Number of successful extensions: 3062
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3049
Number of HSP's successfully gapped: 10
Length of query: 302
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 201
Effective length of database: 12,583,923
Effective search space: 2529368523
Effective search space used: 2529368523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008302
(906 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000568.1| interleukin-1 receptor antagonist protein isofo... 273 2e-73
Alignment gi|NP_776214.1| interleukin-1 receptor antagonist protein isofo... 269 2e-72
Alignment gi|NP_776213.1| interleukin-1 receptor antagonist protein isofo... 269 2e-72
Alignment gi|NP_776215.1| interleukin-1 receptor antagonist protein isofo... 256 2e-68
Alignment gi|NP_775262.1| interleukin-36 receptor antagonist protein [Hom... 122 4e-28
Alignment gi|NP_036407.1| interleukin-36 receptor antagonist protein [Hom... 122 4e-28
Alignment gi|NP_115945.4| interleukin-1 family member 10 [Homo sapiens]. 102 5e-22
Alignment gi|NP_775184.1| interleukin-1 family member 10 [Homo sapiens]. 102 5e-22
Alignment gi|NP_055255.1| interleukin-36 alpha [Homo sapiens]. 71 1e-12
Alignment gi|NP_775270.1| interleukin-36 beta isoform 2 [Homo sapiens]. 69 6e-12
>ref|NP_000568.1| interleukin-1 receptor antagonist protein isoform 3 [Homo sapiens].
Length = 159
Score = 273 bits (697), Expect = 2e-73
Identities = 127/159 (79%), Positives = 140/159 (88%)
Frame = +3
Query: 120 IALETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEP 299
+ALET C P G++ +MQAFRIWDVNQKTFYLRNNQLVAGYLQGPN LEEKIDVVP+EP
Sbjct: 1 MALETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEP 60
Query: 300 HFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFES 479
H +FLGIHGGK+CLSCVKSGDE +LQLE VNITDL +N +QDKRF FIRSDSGPTTSFES
Sbjct: 61 HALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFES 120
Query: 480 AACPGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
AACPGWFLCTA+EADQPV LTN P V VTKFYFQ+D+
Sbjct: 121 AACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 159
>ref|NP_776214.1| interleukin-1 receptor antagonist protein isoform 1 precursor [Homo
sapiens].
Length = 177
Score = 269 bits (688), Expect = 2e-72
Identities = 125/156 (80%), Positives = 137/156 (87%)
Frame = +3
Query: 129 ETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEPHFV 308
ET C P G++ +MQAFRIWDVNQKTFYLRNNQLVAGYLQGPN LEEKIDVVP+EPH +
Sbjct: 22 ETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL 81
Query: 309 FLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAAC 488
FLGIHGGK+CLSCVKSGDE +LQLE VNITDL +N +QDKRF FIRSDSGPTTSFESAAC
Sbjct: 82 FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAAC 141
Query: 489 PGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
PGWFLCTA+EADQPV LTN P V VTKFYFQ+D+
Sbjct: 142 PGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 177
>ref|NP_776213.1| interleukin-1 receptor antagonist protein isoform 2 [Homo sapiens].
Length = 180
Score = 269 bits (688), Expect = 2e-72
Identities = 125/156 (80%), Positives = 137/156 (87%)
Frame = +3
Query: 129 ETACHPLGKRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEPHFV 308
ET C P G++ +MQAFRIWDVNQKTFYLRNNQLVAGYLQGPN LEEKIDVVP+EPH +
Sbjct: 25 ETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL 84
Query: 309 FLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAAC 488
FLGIHGGK+CLSCVKSGDE +LQLE VNITDL +N +QDKRF FIRSDSGPTTSFESAAC
Sbjct: 85 FLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAAC 144
Query: 489 PGWFLCTALEADQPVGLTNTPKAAVKVTKFYFQQDQ 596
PGWFLCTA+EADQPV LTN P V VTKFYFQ+D+
Sbjct: 145 PGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE 180
>ref|NP_776215.1| interleukin-1 receptor antagonist protein isoform 4 [Homo sapiens].
Length = 143
Score = 256 bits (655), Expect = 2e-68
Identities = 120/143 (83%), Positives = 129/143 (90%)
Frame = +3
Query: 168 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEPHFVFLGIHGGKLCLSC 347
MQAFRIWDVNQKTFYLRNNQLVAGYLQGPN LEEKIDVVP+EPH +FLGIHGGK+CLSC
Sbjct: 1 MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSC 60
Query: 348 VKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTALEADQ 527
VKSGDE +LQLE VNITDL +N +QDKRF FIRSDSGPTTSFESAACPGWFLCTA+EADQ
Sbjct: 61 VKSGDETRLQLEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQ 120
Query: 528 PVGLTNTPKAAVKVTKFYFQQDQ 596
PV LTN P V VTKFYFQ+D+
Sbjct: 121 PVSLTNMPDEGVMVTKFYFQEDE 143
>ref|NP_775262.1| interleukin-36 receptor antagonist protein [Homo sapiens].
Length = 155
Score = 122 bits (306), Expect = 4e-28
Identities = 74/148 (50%), Positives = 86/148 (58%), Gaps = 10/148 (6%)
Frame = +3
Query: 177 FRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVP-------VEPHFVFLGIHGGKL 335
FR+ D K YL NNQL+AG L E+I VVP + P V LG+ GG
Sbjct: 9 FRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP--VILGVQGGSQ 66
Query: 336 CLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTAL 515
CLSC G E L LEPVNI +L +++ K FTF R D G T+SFESAA PGWFLCT
Sbjct: 67 CLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVP 125
Query: 516 EADQPVGLTNTPKAA---VKVTKFYFQQ 590
EADQPV LT P+ +T FYFQQ
Sbjct: 126 EADQPVRLTQLPENGGWNAPITDFYFQQ 153
>ref|NP_036407.1| interleukin-36 receptor antagonist protein [Homo sapiens].
Length = 155
Score = 122 bits (306), Expect = 4e-28
Identities = 74/148 (50%), Positives = 86/148 (58%), Gaps = 10/148 (6%)
Frame = +3
Query: 177 FRIWDVNQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVP-------VEPHFVFLGIHGGKL 335
FR+ D K YL NNQL+AG L E+I VVP + P V LG+ GG
Sbjct: 9 FRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSP--VILGVQGGSQ 66
Query: 336 CLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTAL 515
CLSC G E L LEPVNI +L +++ K FTF R D G T+SFESAA PGWFLCT
Sbjct: 67 CLSC-GVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTVP 125
Query: 516 EADQPVGLTNTPKAA---VKVTKFYFQQ 590
EADQPV LT P+ +T FYFQQ
Sbjct: 126 EADQPVRLTQLPENGGWNAPITDFYFQQ 153
>ref|NP_115945.4| interleukin-1 family member 10 [Homo sapiens].
Length = 152
Score = 102 bits (254), Expect = 5e-22
Identities = 60/137 (43%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Frame = +3
Query: 195 NQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEPHF-----VFLGIHGGKLCLSCVKSG 359
+QK Y R+ QL+ G N EKI ++P +FLGI GG CL+CV++
Sbjct: 16 DQKALYTRDGQLLVGDPVADNC-CAEKICILPNRGLARTKVPIFLGIQGGSRCLACVETE 74
Query: 360 DEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTALEADQPVGL 539
+ LQLE VNI +L K E+ RFTF +S SG E+AA PGWFLC E QPV L
Sbjct: 75 EGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQL 134
Query: 540 TNTPKAAVKVTKFYFQQ 590
T + + + TKFYF+Q
Sbjct: 135 TKESEPSAR-TKFYFEQ 150
>ref|NP_775184.1| interleukin-1 family member 10 [Homo sapiens].
Length = 152
Score = 102 bits (254), Expect = 5e-22
Identities = 60/137 (43%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Frame = +3
Query: 195 NQKTFYLRNNQLVAGYLQGPNTKLEEKIDVVPVEPHF-----VFLGIHGGKLCLSCVKSG 359
+QK Y R+ QL+ G N EKI ++P +FLGI GG CL+CV++
Sbjct: 16 DQKALYTRDGQLLVGDPVADNC-CAEKICILPNRGLARTKVPIFLGIQGGSRCLACVETE 74
Query: 360 DEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAACPGWFLCTALEADQPVGL 539
+ LQLE VNI +L K E+ RFTF +S SG E+AA PGWFLC E QPV L
Sbjct: 75 EGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQL 134
Query: 540 TNTPKAAVKVTKFYFQQ 590
T + + + TKFYF+Q
Sbjct: 135 TKESEPSAR-TKFYFEQ 150
>ref|NP_055255.1| interleukin-36 alpha [Homo sapiens].
Length = 158
Score = 71.2 bits (173), Expect = 1e-12
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +3
Query: 306 VFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFESAA 485
++LG++G LCL C K GD+ LQL+ +I DL E K F F S SG ++FES A
Sbjct: 63 IYLGLNGLNLCLMCAKVGDQPTLQLKEKDIMDLYNQPEPVKSFLFYHSQSGRNSTFESVA 122
Query: 486 CPGWFLCTALEADQPVGLT 542
PGWF+ + E P+ LT
Sbjct: 123 FPGWFIAVSSEGGCPLILT 141
>ref|NP_775270.1| interleukin-36 beta isoform 2 [Homo sapiens].
Length = 157
Score = 68.9 bits (167), Expect = 6e-12
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Frame = +3
Query: 153 KRPCRMQAFRIWDVNQKTFYLRNNQLVAGYLQGP------------NTKLEEKIDVVPVE 296
+R +++ I D Q + L N L+A L +T+ +K +
Sbjct: 4 QREAAPKSYAIRDSRQMVWVLSGNSLIAAPLSRSIKPVTLHLIACRDTEFSDK-----EK 58
Query: 297 PHFVFLGIHGGKLCLSCVKSGDEMKLQLEPVNITDLRKNSEQDKRFTFIRSDSGPTTSFE 476
+ V+LGI G LCL C + + LQL+ NI DL + K F F + G T+ F+
Sbjct: 59 GNMVYLGIKGKDLCLFCAEIQGKPTLQLKEKNIMDLYVEKKAQKPFLFFHNKEGSTSVFQ 118
Query: 477 SAACPGWFLCTALEADQPVGLTNTPKAAVKVTKFY 581
S + PGWF+ T+ + QP+ LT + T FY
Sbjct: 119 SVSYPGWFIATSTTSGQPIFLTK-ERGITNNTNFY 152
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,848,916
Number of extensions: 1112767
Number of successful extensions: 4159
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4134
Number of HSP's successfully gapped: 17
Length of query: 302
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 200
Effective length of database: 14,934,836
Effective search space: 2986967200
Effective search space used: 2986967200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008302
(906 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,940,358
Number of extensions: 272
Number of successful extensions: 272
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 0
Length of query: 906
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 885
Effective length of database: 2,808,413,156
Effective search space: 2485445643060
Effective search space used: 2485445643060
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)