Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008304
(973 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030235.1| interferon gamma receptor 1 [Bos taurus]. 357 1e-98
Alignment gi|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos t... 50 3e-06
Alignment gi|XP_002690307.1| PREDICTED: interleukin 22-binding protein-li... 50 3e-06
Alignment gi|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos ... 50 3e-06
>ref|NP_001030235.1| interferon gamma receptor 1 [Bos taurus].
Length = 466
Score = 357 bits (915), Expect = 1e-98
Identities = 177/283 (62%), Positives = 205/283 (72%)
Frame = +2
Query: 98 MALLLFLALITQAGSEAKMSTADPELSSVPMPTNLKIEAYNWNTIVSWDYPPTLWSPVFT 277
MALL FL + GS +MS A P LSSVP PTN+ I+AYN NT++ WDYP L SP+FT
Sbjct: 1 MALLFFLVPVLLTGSWVEMSAAIPGLSSVPPPTNVTIQAYNLNTVIFWDYPVILQSPMFT 60
Query: 278 AQVKTYEDATWIDACNTSDHSCNIFPTMYSPSDPLWARVKARLGQQESAYAESKEFILCQ 457
QV YED WIDACNTSDHSCNIF + PS +W RVK R+GQ+ES YA+SKEFILC+
Sbjct: 61 VQVMNYEDGKWIDACNTSDHSCNIFSVINDPSSSVWGRVKVRVGQEESVYAQSKEFILCK 120
Query: 458 QGKFGPPKLGIRKKEDQIIVDIFHPLITTNGNVPAXXXXXXXXXCYTFTYKVFVRINRSE 637
+GK GPPKLGIRKKE+QIIVDIFHPLIT NG P CYTFTY VFV INRSE
Sbjct: 121 EGKVGPPKLGIRKKENQIIVDIFHPLITVNGKEP-EAMYDDENTCYTFTYSVFVSINRSE 179
Query: 638 TTDKMYIKNEDDCNETQCFLSIPVSSLNSEYCISAEGVSDVWDVTTEKSEEICITSFDSA 817
TTDKMY K E+DCNETQCFL+IPVSSLNS+YC+SAEGVS++W VTTEKS+E+CIT D
Sbjct: 180 TTDKMYTK-EEDCNETQCFLNIPVSSLNSQYCVSAEGVSELWAVTTEKSDELCITFSDDN 238
Query: 818 STENSVWIPIVTXXXXXXXXXXXXXCYLIRKMNPF*RETSCYP 946
+TE+ VWIPIV C +I+K P RE + P
Sbjct: 239 NTEDPVWIPIVAALLLFLVFALVVVCCIIKKFYPIKREGTKLP 281
>ref|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos taurus].
Length = 558
Score = 50.1 bits (118), Expect = 3e-06
Identities = 56/252 (22%), Positives = 91/252 (36%), Gaps = 5/252 (1%)
Frame = +2
Query: 101 ALLLFLALITQAGSEAKMSTADPELSSVPMPTNLKIEAYNWNTIVSWDYPPTL--WSPVF 274
ALL L + G ++ D +P PTN+ + N I+ W+ P L +
Sbjct: 22 ALLFLLLVAAPTGRAVPCASGD-----LPKPTNVAFISINMKNILQWNPPEGLQGMEVSY 76
Query: 275 TAQVKTYEDATWIDAC---NTSDHSCNIFPTMYSPSDPLWARVKARLGQQESAYAESKEF 445
T Q Y W++ N S C++ +A+VKA G S +AE+ F
Sbjct: 77 TVQYFIYGQKKWLNKSECRNISRTYCDLSAETSDYEHQYYAKVKAMWGTNCSKWAETGRF 136
Query: 446 ILCQQGKFGPPKLGIRKKEDQIIVDIFHPLITTNGNVPAXXXXXXXXXCYTFTYKVFVRI 625
+ + GPP++ + E I + + P P Y V +
Sbjct: 137 YPFLETQIGPPEVALTTDEKSISIVLTAPKKWKKN--PEESSISMQQIYSNLKYNVSIYN 194
Query: 626 NRSETTDKMYIKNEDDCNETQCFLSIPVSSLNSEYCISAEGVSDVWDVTTEKSEEICITS 805
+S T + N T F + +L YC+ E T SE C+++
Sbjct: 195 TKSNRTWSQCV-----TNHTLVFSWLEPGTL---YCVLVESFVPGPPRLTHPSERQCVST 246
Query: 806 FDSASTENSVWI 841
+ +T V I
Sbjct: 247 LEDQTTALEVKI 258
>ref|XP_002690307.1| PREDICTED: interleukin 22-binding protein-like [Bos taurus].
Length = 230
Score = 50.1 bits (118), Expect = 3e-06
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 7/210 (3%)
Frame = +2
Query: 191 PTNLKIEAYNWNTIVSWDYPPTLW--SPVFTAQVKTYEDATWI--DAC-NTSDHSCNIFP 355
P + ++ N++ I+ W + ++ Q K Y + W + C + C++
Sbjct: 31 PQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQYKMYGERQWKNKETCWGIREFFCDLTN 90
Query: 356 TMYSPSDPLWARVKARLGQQESAYAESKEFILCQQGKFGPPKLGIRKKEDQIIVDIFHPL 535
+P + RVK L S + ++ FI + K PP + I ++V++ P
Sbjct: 91 ETSDIWEPYYGRVKTALAGIHSGWTMTQRFIPWWETKIDPPVMNITHVNGSLLVNLHAP- 149
Query: 536 ITTNGNVPAXXXXXXXXXC--YTFTYKVFVRINRSETTDKMYIKNEDDCNETQCFLSIPV 709
N+P Y Y+VF+ N E K+Y + I V
Sbjct: 150 -----NLPYRDQEGENVSMEYYELVYRVFIFNNSLEKEQKVY-------EGAHRVVEIKV 197
Query: 710 SSLNSEYCISAEGVSDVWDVTTEKSEEICI 799
+S ++ YC+ AE + D +++S E C+
Sbjct: 198 TSPHTGYCVVAELYQPMLDRKSQRSRERCM 227
>ref|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos taurus].
Length = 230
Score = 50.1 bits (118), Expect = 3e-06
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 7/210 (3%)
Frame = +2
Query: 191 PTNLKIEAYNWNTIVSWDYPPTLW--SPVFTAQVKTYEDATWI--DAC-NTSDHSCNIFP 355
P + ++ N++ I+ W + ++ Q K Y + W + C + C++
Sbjct: 31 PQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQYKMYGERQWKNKETCWGIREFFCDLTN 90
Query: 356 TMYSPSDPLWARVKARLGQQESAYAESKEFILCQQGKFGPPKLGIRKKEDQIIVDIFHPL 535
+P + RVK L S + ++ FI + K PP + I ++V++ P
Sbjct: 91 ETSDIWEPYYGRVKTALAGIHSGWTMTQRFIPWWETKIDPPVMNITHVNGSLLVNLHAP- 149
Query: 536 ITTNGNVPAXXXXXXXXXC--YTFTYKVFVRINRSETTDKMYIKNEDDCNETQCFLSIPV 709
N+P Y Y+VF+ N E K+Y + I V
Sbjct: 150 -----NLPYRDQEGENVSMEYYELVYRVFIFNNSLEKEQKVY-------EGAHRVVEIKV 197
Query: 710 SSLNSEYCISAEGVSDVWDVTTEKSEEICI 799
+S ++ YC+ AE + D +++S E C+
Sbjct: 198 TSPHTGYCVVAELYQPMLDRKSQRSRERCM 227
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,414,710
Number of extensions: 866414
Number of successful extensions: 2602
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2591
Number of HSP's successfully gapped: 4
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008304
(973 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533421.1| PREDICTED: similar to Interferon-gamma receptor... 343 1e-95
>ref|XP_533421.1| PREDICTED: similar to Interferon-gamma receptor alpha chain
precursor (IFN-gamma-R1) (CD119 antigen) (CDw119) [Canis
familiaris].
Length = 475
Score = 343 bits (881), Expect(2) = 1e-95
Identities = 172/283 (60%), Positives = 203/283 (71%)
Frame = +2
Query: 98 MALLLFLALITQAGSEAKMSTADPELSSVPMPTNLKIEAYNWNTIVSWDYPPTLWSPVFT 277
MALLL L L+ QAG +MS ADPELSSVP+PTN+ IEAYN+NT++ W+YPP +PVFT
Sbjct: 1 MALLLLLVLVLQAGRWVEMSPADPELSSVPVPTNITIEAYNFNTVLFWNYPPMPQTPVFT 60
Query: 278 AQVKTYEDATWIDACNTSDHSCNIFPTMYSPSDPLWARVKARLGQQESAYAESKEFILCQ 457
QVK Y +A WIDACNTSDH CNIFP + PS LWARVKARLGQ+ESAY ESKEFILC+
Sbjct: 61 VQVKNYGEAVWIDACNTSDHYCNIFPVINDPSLSLWARVKARLGQKESAYVESKEFILCR 120
Query: 458 QGKFGPPKLGIRKKEDQIIVDIFHPLITTNGNVPAXXXXXXXXXCYTFTYKVFVRINRSE 637
QGK GPP LGIRK E+QII+D+FHPL +G C+TF Y V+++IN SE
Sbjct: 121 QGKIGPPALGIRKMENQIIIDLFHPLTAISGR--QAVPIYDENNCHTFMYIVYMKINGSE 178
Query: 638 TTDKMYIKNEDDCNETQCFLSIPVSSLNSEYCISAEGVSDVWDVTTEKSEEICITSFDSA 817
TT +M I++EDDCNETQC L+IPVSSL+ YCISAEGVS W V TEKS E+CIT+FD
Sbjct: 179 TTYRMGIEDEDDCNETQCRLTIPVSSLSLNYCISAEGVSKEWSVVTEKSRELCITTFDGD 238
Query: 818 STENSVWIPIVTXXXXXXXXXXXXXCYLIRKMNPF*RETSCYP 946
E+SVWIPIV I+KMNPF RE+ P
Sbjct: 239 HIEDSVWIPIVAALLLFLVLILVFVYCYIKKMNPFKRESIMLP 281
Score = 25.8 bits (55), Expect(2) = 1e-95
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 931 NIMLPKSLLSVVK 969
+IMLPKSLLSVVK
Sbjct: 277 SIMLPKSLLSVVK 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,794,469
Number of extensions: 879319
Number of successful extensions: 2733
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2726
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008304
(973 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171378.1| interferon gamma receptor 1 [Sus scrofa]. 516 e-148
Alignment gi|XP_003121227.1| PREDICTED: interleukin-22 receptor subunit a... 49 4e-06
>ref|NP_001171378.1| interferon gamma receptor 1 [Sus scrofa].
Length = 470
Score = 516 bits (1329), Expect(2) = e-148
Identities = 254/283 (89%), Positives = 254/283 (89%)
Frame = +2
Query: 98 MALLLFLALITQAGSEAKMSTADPELSSVPMPTNLKIEAYNWNTIVSWDYPPTLWSPVFT 277
MALLLFLALITQAGSEAKMSTADPELSSVP PTNLKIEAYNWNTIVSWDYPPTLWSPVFT
Sbjct: 1 MALLLFLALITQAGSEAKMSTADPELSSVPTPTNLKIEAYNWNTIVSWDYPPTLWSPVFT 60
Query: 278 AQVKTYEDATWIDACNTSDHSCNIFPTMYSPSDPLWARVKARLGQQESAYAESKEFILCQ 457
AQVKTYEDATWIDACNTSDHSCNIFPTMYSPSDPLWARVKARLGQQESAYAESKEFILCQ
Sbjct: 61 AQVKTYEDATWIDACNTSDHSCNIFPTMYSPSDPLWARVKARLGQQESAYAESKEFILCQ 120
Query: 458 QGKFGPPKLGIRKKEDQIIVDIFHPLITTNGNVPAXXXXXXXXXCYTFTYKVFVRINRSE 637
QGKFGPPKLGIRKKEDQIIVDIFHPLITTNGNVPA CYTFTYKVFVRIN SE
Sbjct: 121 QGKFGPPKLGIRKKEDQIIVDIFHPLITTNGNVPAVVDDDDDNNCYTFTYKVFVRINGSE 180
Query: 638 TTDKMYIKNEDDCNETQCFLSIPVSSLNSEYCISAEGVSDVWDVTTEKSEEICITSFDSA 817
TTDKMYIKNEDDCNETQCFLSIPVSSLNSEYCISAEGVSDVWDVTTEKSEEICITSFDSA
Sbjct: 181 TTDKMYIKNEDDCNETQCFLSIPVSSLNSEYCISAEGVSDVWDVTTEKSEEICITSFDSA 240
Query: 818 STENSVWIPIVTXXXXXXXXXXXXXCYLIRKMNPF*RETSCYP 946
STENSVWIPIVT CYLIRKMNPF RE P
Sbjct: 241 STENSVWIPIVTALVLFLVLALIVACYLIRKMNPFKRENIMLP 283
Score = 27.7 bits (60), Expect(2) = e-148
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 931 NIMLPKSLLSVVK 969
NIMLPKSLLSVVK
Sbjct: 279 NIMLPKSLLSVVK 291
>ref|XP_003121227.1| PREDICTED: interleukin-22 receptor subunit alpha-2-like [Sus
scrofa].
Length = 231
Score = 48.9 bits (115), Expect = 4e-06
Identities = 41/208 (19%), Positives = 81/208 (38%), Gaps = 5/208 (2%)
Frame = +2
Query: 191 PTNLKIEAYNWNTIVSWDYPP--TLWSPVFTAQVKTYEDATWIDACNT---SDHSCNIFP 355
P + ++ N++ I+ W T S ++ Q K Y + W + N + C++
Sbjct: 31 PQRVHFQSRNFHNILHWQPGGACTSNSSIYFVQYKMYGERQWKNKENCWGIQEFFCDLTN 90
Query: 356 TMYSPSDPLWARVKARLGQQESAYAESKEFILCQQGKFGPPKLGIRKKEDQIIVDIFHPL 535
+P + RV+ L S + ++ F + K PP + I + ++V + P
Sbjct: 91 ETSDIWEPYYGRVRTSLAGMHSGWTMTRRFTPWWETKIDPPTMNITQVNGSLVVILHAPK 150
Query: 536 ITTNGNVPAXXXXXXXXXCYTFTYKVFVRINRSETTDKMYIKNEDDCNETQCFLSIPVSS 715
+ Y Y++F+ N E K+Y + + I +
Sbjct: 151 LPYRDG---KGKTVSMENYYELVYRLFIINNSLEKEQKVY-------EGARRVVEIEALT 200
Query: 716 LNSEYCISAEGVSDVWDVTTEKSEEICI 799
+ YC+ AE + D +++SEE C+
Sbjct: 201 PHRSYCVVAEIYQPMLDRRSQRSEERCV 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,076,165
Number of extensions: 551177
Number of successful extensions: 1701
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1701
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008304
(973 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034641.1| interferon gamma receptor 1 precursor [Mus musc... 230 1e-60
>ref|NP_034641.1| interferon gamma receptor 1 precursor [Mus musculus].
Length = 477
Score = 230 bits (587), Expect = 1e-60
Identities = 127/293 (43%), Positives = 172/293 (58%), Gaps = 3/293 (1%)
Frame = +2
Query: 77 PESVWSSMALLLFLALITQAGSEAKMSTADPELSSVPMPTNLKIEAYNWNTIVSWDYPPT 256
P++ M LL+ L L + GS A ST DPE SVP+PTN+ I++YN N +V W+Y
Sbjct: 3 PQAAAGRMILLVVLMLSAKVGSGALTSTEDPEPPSVPVPTNVLIKSYNLNPVVCWEYQNM 62
Query: 257 LWSPVFTAQVKTYEDATWIDAC-NTSDHSCNIFPTMYSPSDPLWARVKARLGQQESAYAE 433
+P+FT QVK Y +W D+C N SDH CNI+ + P WARVKA++GQ+ES YA
Sbjct: 63 SQTPIFTVQVKVYS-GSWTDSCTNISDHCCNIYEQIMYPDVSAWARVKAKVGQKESDYAR 121
Query: 434 SKEFILCQQGKFGPPKLGI-RKKEDQIIVDIFHPLITTNGNVPAXXXXXXXXXCYTFTYK 610
SKEF++C +GK GPP L I RKKE+Q+ V +FHP + NG CYTF Y
Sbjct: 122 SKEFLMCLKGKVGPPGLEIRRKKEEQLSVLVFHPEVVVNGE-SQGTMFGDGSTCYTFDYT 180
Query: 611 VFVRINRS-ETTDKMYIKNEDDCNETQCFLSIPVSSLNSEYCISAEGVSDVWDVTTEKSE 787
V+V NRS E + +++CNET C L+I VS+L+S YCIS +G+S W V TEKS+
Sbjct: 181 VYVEHNRSGEILHTKHTVEKEECNETLCELNISVSTLDSRYCISVDGISSFWQVRTEKSK 240
Query: 788 EICITSFDSASTENSVWIPIVTXXXXXXXXXXXXXCYLIRKMNPF*RETSCYP 946
++CI F ++S+WI +V Y K N F R++ P
Sbjct: 241 DVCIPPFHD-DRKDSIWI-LVVAPLTVFTVVILVFAYWYTKKNSFKRKSIMLP 291
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,154,408
Number of extensions: 747016
Number of successful extensions: 2256
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2248
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008304
(973 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000407.1| interferon gamma receptor 1 precursor [Homo sap... 277 1e-75
Alignment gi|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform... 55 7e-08
>ref|NP_000407.1| interferon gamma receptor 1 precursor [Homo sapiens].
Length = 489
Score = 277 bits (709), Expect(2) = 1e-75
Identities = 146/286 (51%), Positives = 187/286 (65%), Gaps = 3/286 (1%)
Frame = +2
Query: 98 MALLLFLALITQAGSEAKMSTADPELSSVPMPTNLKIEAYNWNTIVSWDYPPTLWSPVFT 277
MALL L L+ Q S A+M TAD SSVP PTN+ IE+YN N IV W+Y PVFT
Sbjct: 1 MALLFLLPLVMQGVSRAEMGTADLGPSSVPTPTNVTIESYNMNPIVYWEYQIMPQVPVFT 60
Query: 278 AQVKTY--EDATWIDAC-NTSDHSCNIFPTMYSPSDPLWARVKARLGQQESAYAESKEFI 448
+VK Y +++ WIDAC N S H CNI + PS+ LW RVKAR+GQ+ESAYA+S+EF
Sbjct: 61 VEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFA 120
Query: 449 LCQQGKFGPPKLGIRKKEDQIIVDIFHPLITTNGNVPAXXXXXXXXXCYTFTYKVFVRIN 628
+C+ GK GPPKL IRK+E QI++DIFHP + NG+ CY Y V+VR+N
Sbjct: 121 VCRDGKIGPPKLDIRKEEKQIMIDIFHPSVFVNGD-EQEVDYDPETTCYIRVYNVYVRMN 179
Query: 629 RSETTDKMYIKNEDDCNETQCFLSIPVSSLNSEYCISAEGVSDVWDVTTEKSEEICITSF 808
SE K+ + EDDC+E QC L+IPVSSLNS+YC+SAEGV VW VTTEKS+E+CIT F
Sbjct: 180 GSEIQYKILTQKEDDCDEIQCQLAIPVSSLNSQYCVSAEGVLHVWGVTTEKSKEVCITIF 239
Query: 809 DSASTENSVWIPIVTXXXXXXXXXXXXXCYLIRKMNPF*RETSCYP 946
+S S + S+WIP+V C+ I+K+NP ++ P
Sbjct: 240 NS-SIKGSLWIPVVAALLLFLVLSLVFICFYIKKINPLKEKSIILP 284
Score = 25.0 bits (53), Expect(2) = 1e-75
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = +1
Query: 925 ERNIMLPKSLLSVVK 969
E++I+LPKSL+SVV+
Sbjct: 278 EKSIILPKSLISVVR 292
>ref|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform 2 [Homo sapiens].
Length = 231
Score = 55.5 bits (132), Expect = 7e-08
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 8/211 (3%)
Frame = +2
Query: 191 PTNLKIEAYNWNTIVSWDYPPTLW--SPVFTAQVKTYEDATWI---DACNTSDHSCNIFP 355
P ++ ++ N++ I+ W L S V+ Q K Y W D T + SC++
Sbjct: 31 PQRVQFQSRNFHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTS 90
Query: 356 TMYSPSDPLWARVKARLGQQESAYAESKEFILCQQGKFGPPKLGIRKKEDQIIVDIFHPL 535
+P + RV+A S ++ + F + K PP + I + ++V + P
Sbjct: 91 ETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAP- 149
Query: 536 ITTNGNVPAXXXXXXXXXC---YTFTYKVFVRINRSETTDKMYIKNEDDCNETQCFLSIP 706
N+P Y Y+VF+ N E K+Y + I
Sbjct: 150 -----NLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVY-------EGAHRAVEIE 197
Query: 707 VSSLNSEYCISAEGVSDVWDVTTEKSEEICI 799
+ +S YC+ AE + D +++SEE C+
Sbjct: 198 ALTPHSSYCVVAEIYQPMLDRRSQRSEERCV 228
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,250,992
Number of extensions: 873206
Number of successful extensions: 2621
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2616
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008304
(973 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 381 e-103
>Sscrofa_Chr01
|| Length = 315321322
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 636 agaccacagataaaatgtacataaagaatgaagatgattgtaatgagactcagtgcttct 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30402886 agaccacagataaaatgtacataaagaatgaagatgattgtaatgagactcagtgcttct 30402945
Query: 696 tgagcattccagtgtcctcgctgaactctgagtactgtatttcagcagaaggagtctcag 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30402946 tgagcattccagtgtcctcgctgaactctgagtactgtatttcagcagaaggagtctcag 30403005
Query: 756 acgtgtgggatgttacaactgagaagtctgaagaaatctgtattaccagttttgatagtg 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30403006 acgtgtgggatgttacaactgagaagtctgaagaaatctgtattaccagttttgatagtg 30403065
Query: 816 ccagcacagaaa 827
||||||||||||
Sbjct: 30403066 ccagcacagaaa 30403077
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 1 tccgcgacggtggaagtgacgcaagccctgggcccgagggccgcgccgtggacgccggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30388707 tccgcgacggtggaagtgacgcaagccctgggcccgagggccgcgccgtggacgccggca 30388766
Query: 61 cttgttcggggcaccacccgaatcggtctggagcagcatggctcttctcctcttcctcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30388767 cttgttcggggcaccacccgaatcggtctggagcagcatggctcttctcctcttcctcgc 30388826
Query: 121 ccttatcacgcaggccgggagcgaggctaagatgagcaccgcggatccggagctgtcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30388827 ccttatcacgcaggccgggagcgaggctaagatgagcaccgcggatccggagctgtcctc 30388886
Query: 181 gg 182
||
Sbjct: 30388887 gg 30388888
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 460 agggaaatttggaccccctaaactaggtatcagaaagaaggaagaccagatcattgttga 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30400742 agggaaatttggaccccctaaactaggtatcagaaagaaggaagaccagatcattgttga 30400801
Query: 520 tatatttcaccctttaattactacaaatggaaacgtcccggcagtcgtagacgatgacga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30400802 tatatttcaccctttaattactacaaatggaaacgtcccggcagtcgtagacgatgacga 30400861
Query: 580 tgacaataactgttacacattcacatacaaagtgtttgtgaggataaacagaagcgag 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30400862 tgacaataactgttacacattcacatacaaagtgtttgtgaggataaacagaagcgag 30400919
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 298 ggacgcaacatggatcgatgcctgcaatacctctgatcattcttgtaatatatttcctac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30398243 ggacgcaacatggatcgatgcctgcaatacctctgatcattcttgtaatatatttcctac 30398302
Query: 358 gatgtacagtccatcagatcctctctgggctagagttaaagctaggcttggtcaacagga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30398303 gatgtacagtccatcagatcctctctgggctagagttaaagctaggcttggtcaacagga 30398362
Query: 418 atcagcctatgcagagtcaaaagaatttattttatgccaacaagg 462
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30398363 atcagcctatgcagagtcaaaagaatttattttatgccaacaagg 30398407
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 182 gtgccgatgccaactaatctcaaaattgaggcgtataactggaacaccattgtgtcttgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30397447 gtgccgatgccaactaatctcaaaattgaggcgtataactggaacaccattgtgtcttgg 30397506
Query: 242 gattacccgcccacactctggagcccggtgtttaccgcccaggtgaagacttacgag 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30397507 gattacccgcccacactctggagcccggtgtttaccgcccaggtgaagacttacgag 30397563
Score = 230 bits (116), Expect = 1e-57
Identities = 126/128 (98%), Gaps = 1/128 (0%)
Strand = Plus / Plus
Query: 828 attctgtttggattccaattgttactgccttagtactcttcctagtacttgccctgatag 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30406224 attctgtttggattccaattgttactgccttagtactcttcctagtacttgccctgatag 30406283
Query: 888 ttgcatgttatctaattaggaaaatgaatccattttagagag-aaacatcatgttaccca 946
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 30406284 ttgcatgttatctaattaggaaaatgaatccatttaagagagaaaacatcatgttaccca 30406343
Query: 947 aatctttg 954
||||||||
Sbjct: 30406344 aatctttg 30406351
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,660,902
Number of extensions: 190
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 6
Length of query: 973
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 952
Effective length of database: 2,808,413,156
Effective search space: 2673609324512
Effective search space used: 2673609324512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)