Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008311
(1001 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068777.1| neuronal membrane glycoprotein M6-a [Bos tau... 512 e-145
Alignment gi|NP_001098451.1| neuronal membrane glycoprotein M6-b [Bos tau... 222 5e-58
Alignment gi|NP_776574.2| myelin proteolipid protein [Bos taurus]. 182 4e-46
>ref|NP_001068777.1| neuronal membrane glycoprotein M6-a [Bos taurus].
Length = 278
Score = 512 bits (1319), Expect = e-145
Identities = 250/266 (93%), Positives = 250/266 (93%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 656
LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 192
Query: 657 TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKYE 836
TVSENFLRMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKYE
Sbjct: 193 TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYE 252
Query: 837 DIKSKEEQELHDIHSTRSKERLNAYT 914
DIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 DIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|NP_001098451.1| neuronal membrane glycoprotein M6-b [Bos taurus].
Length = 265
Score = 222 bits (565), Expect = 5e-58
Identities = 109/241 (45%), Positives = 159/241 (65%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 78
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 79 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 138
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 139 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVE--QICVDIRQYGIIP 196
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
+IC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 197 WNAFPGRICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 253
Query: 807 K 809
K
Sbjct: 254 K 254
>ref|NP_776574.2| myelin proteolipid protein [Bos taurus].
Length = 277
Score = 182 bits (462), Expect = 4e-46
Identities = 100/281 (35%), Positives = 149/281 (53%), Gaps = 41/281 (14%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR------- 452
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT 118
Query: 453 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF 548
C+ W F+ +TY + WL V A +++PVY+YF
Sbjct: 119 GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYF 178
Query: 549 NLWTICR-----NTTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT 710
N WT C+ + T LC D R +G++ K+C N L +C++ E MT
Sbjct: 179 NTWTTCQSIAAPSKTSASIGTLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT 236
Query: 711 FHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
FH ++ +++ + N+A +K R K+
Sbjct: 237 FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,588,059
Number of extensions: 1011797
Number of successful extensions: 3365
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3356
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008311
(1001 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform ... 511 e-145
Alignment gi|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform ... 504 e-143
Alignment gi|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform ... 499 e-141
Alignment gi|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform ... 476 e-134
Alignment gi|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform ... 468 e-132
Alignment gi|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform ... 456 e-128
Alignment gi|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform ... 224 8e-59
Alignment gi|NP_001013856.1| myelin proteolipid protein [Canis lupus fami... 183 3e-46
>ref|XP_532853.2| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 1 [Canis
familiaris].
Length = 278
Score = 511 bits (1317), Expect = e-145
Identities = 249/266 (93%), Positives = 250/266 (93%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 656
LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 192
Query: 657 TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKYE 836
TVSENF+RMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKYE
Sbjct: 193 TVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYE 252
Query: 837 DIKSKEEQELHDIHSTRSKERLNAYT 914
DIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 DIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|XP_858148.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 5 [Canis
familiaris].
Length = 281
Score = 504 bits (1299), Expect = e-143
Identities = 248/269 (92%), Positives = 250/269 (92%), Gaps = 3/269 (1%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVFTM---IDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 467
DVFT+ IDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW
Sbjct: 73 DVFTIMYVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132
Query: 468 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEK 647
FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEK
Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEK 192
Query: 648 KICTVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQ 827
KICTVSENF+RMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQ
Sbjct: 193 KICTVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQ 252
Query: 828 KYEDIKSKEEQELHDIHSTRSKERLNAYT 914
KYEDIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 KYEDIKSKEEQELHDIHSTRSKERLNAYT 281
>ref|XP_858188.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 6 [Canis
familiaris].
Length = 281
Score = 499 bits (1286), Expect = e-141
Identities = 246/269 (91%), Positives = 248/269 (92%), Gaps = 3/269 (1%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVF---TMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 467
DV +IDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW
Sbjct: 73 DVSLEKNVIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAW 132
Query: 468 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEK 647
FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEK
Sbjct: 133 FIMLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEK 192
Query: 648 KICTVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQ 827
KICTVSENF+RMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQ
Sbjct: 193 KICTVSENFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQ 252
Query: 828 KYEDIKSKEEQELHDIHSTRSKERLNAYT 914
KYEDIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 KYEDIKSKEEQELHDIHSTRSKERLNAYT 281
>ref|XP_858022.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 2 [Canis
familiaris].
Length = 277
Score = 476 bits (1226), Expect = e-134
Identities = 237/267 (88%), Positives = 239/267 (89%), Gaps = 1/267 (0%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVT-IGEEKKI 653
LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFG G +I
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGRADWNGWPGRI 192
Query: 654 CTVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
C NF+RMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKY
Sbjct: 193 C--GSNFMRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 250
Query: 834 EDIKSKEEQELHDIHSTRSKERLNAYT 914
EDIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 251 EDIKSKEEQELHDIHSTRSKERLNAYT 277
>ref|XP_858064.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 3 [Canis
familiaris].
Length = 279
Score = 468 bits (1204), Expect = e-132
Identities = 233/267 (87%), Positives = 237/267 (88%), Gaps = 1/267 (0%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 656
LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGI + +
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIQGMPWDSTPA 192
Query: 657 TVSENFLR-MCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
+ L+ MCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKY
Sbjct: 193 KWCASKLKVMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 252
Query: 834 EDIKSKEEQELHDIHSTRSKERLNAYT 914
EDIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 EDIKSKEEQELHDIHSTRSKERLNAYT 279
>ref|XP_858107.1| PREDICTED: similar to glycoprotein M6A isoform 1 isoform 4 [Canis
familiaris].
Length = 287
Score = 456 bits (1173), Expect = e-128
Identities = 228/275 (82%), Positives = 232/275 (84%), Gaps = 9/275 (3%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQF---------GIV 629
LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQF G+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGKLEWRGIQGMP 192
Query: 630 TIGEEKKICTVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVK 809
+ C F + S +LNMTFH MVHYLMVLSANWAYVK
Sbjct: 193 CRPDLSSACNPDTGFDSLLVSLQLNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVK 252
Query: 810 DACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 914
DACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 DACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 287
>ref|XP_537959.2| PREDICTED: similar to glycoprotein M6B isoform 2 [Canis
familiaris].
Length = 325
Score = 224 bits (572), Expect = 8e-59
Identities = 111/241 (46%), Positives = 160/241 (66%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + A D
Sbjct: 81 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNASDHA 138
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 139 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 198
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 199 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTAGVE--QICVDIRQYGIIP 256
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 257 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 313
Query: 807 K 809
K
Sbjct: 314 K 314
>ref|NP_001013856.1| myelin proteolipid protein [Canis lupus familiaris].
Length = 277
Score = 183 bits (464), Expect = 3e-46
Identities = 100/281 (35%), Positives = 150/281 (53%), Gaps = 41/281 (14%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR------- 452
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT 118
Query: 453 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF 548
C+ W F+ +TY + WL V A +++PVY+YF
Sbjct: 119 GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTIVWLLVFACSAVPVYIYF 178
Query: 549 NLWTICR-----NTTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT 710
N WT C+ + T +LC D R +G++ K+C N L +C++ E MT
Sbjct: 179 NTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT 236
Query: 711 FHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
FH ++ +++ + N+A +K R K+
Sbjct: 237 FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,129,872
Number of extensions: 1032415
Number of successful extensions: 3190
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3177
Number of HSP's successfully gapped: 8
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008311
(1001 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360888.1| PREDICTED: neuronal membrane glycoprotein M6... 514 e-146
Alignment gi|XP_003133370.2| PREDICTED: neuronal membrane glycoprotein M6... 512 e-145
Alignment gi|XP_001927851.3| PREDICTED: neuronal membrane glycoprotein M6... 285 3e-77
Alignment gi|XP_003360279.1| PREDICTED: neuronal membrane glycoprotein M6... 223 1e-58
Alignment gi|XP_003360278.1| PREDICTED: neuronal membrane glycoprotein M6... 223 1e-58
Alignment gi|XP_003360454.1| PREDICTED: myelin proteolipid protein-like i... 198 3e-51
Alignment gi|XP_003360453.1| PREDICTED: myelin proteolipid protein-like i... 182 2e-46
Alignment gi|NP_999139.1| myelin proteolipid protein [Sus scrofa]. 182 2e-46
>ref|XP_003360888.1| PREDICTED: neuronal membrane glycoprotein M6-a-like [Sus scrofa].
Length = 278
Score = 514 bits (1324), Expect = e-146
Identities = 251/266 (94%), Positives = 251/266 (94%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 656
LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 192
Query: 657 TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKYE 836
TVSENFLRMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKYE
Sbjct: 193 TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYE 252
Query: 837 DIKSKEEQELHDIHSTRSKERLNAYT 914
DIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 DIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|XP_003133370.2| PREDICTED: neuronal membrane glycoprotein M6-a-like isoform 1 [Sus
scrofa].
Length = 304
Score = 512 bits (1318), Expect = e-145
Identities = 250/265 (94%), Positives = 250/265 (94%)
Frame = +3
Query: 120 CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTLD 299
CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTLD
Sbjct: 40 CFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTLD 99
Query: 300 VFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIML 479
VFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIML
Sbjct: 100 VFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIML 159
Query: 480 TYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKICT 659
TYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKICT
Sbjct: 160 TYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKICT 219
Query: 660 VSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKYED 839
VSENFLRMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKYED
Sbjct: 220 VSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYED 279
Query: 840 IKSKEEQELHDIHSTRSKERLNAYT 914
IKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 280 IKSKEEQELHDIHSTRSKERLNAYT 304
>ref|XP_001927851.3| PREDICTED: neuronal membrane glycoprotein M6-b isoform 1 [Sus
scrofa].
Length = 328
Score = 285 bits (729), Expect = 3e-77
Identities = 140/276 (50%), Positives = 194/276 (70%), Gaps = 10/276 (3%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 118
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 236
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++H+LM+LS+NWAY+
Sbjct: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 293
Query: 807 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 914
KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 294 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 328
>ref|XP_003360279.1| PREDICTED: neuronal membrane glycoprotein M6-b [Sus scrofa].
Length = 305
Score = 223 bits (568), Expect = 1e-58
Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 118
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 236
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 293
Query: 807 K 809
K
Sbjct: 294 K 294
>ref|XP_003360278.1| PREDICTED: neuronal membrane glycoprotein M6-b [Sus scrofa].
Length = 265
Score = 223 bits (568), Expect = 1e-58
Identities = 110/241 (45%), Positives = 159/241 (65%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 78
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 79 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 138
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T VE +C+D+RQ+GI+
Sbjct: 139 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKAPQSNGTAGVE--QICVDIRQYGIIP 196
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 197 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 253
Query: 807 K 809
K
Sbjct: 254 K 254
>ref|XP_003360454.1| PREDICTED: myelin proteolipid protein-like isoform 2 [Sus scrofa].
Length = 242
Score = 198 bits (504), Expect = 3e-51
Identities = 100/246 (40%), Positives = 150/246 (60%), Gaps = 6/246 (2%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 473
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+ +SA F+
Sbjct: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFV 118
Query: 474 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTICR-----NTTLVEGANLCLDLRQFGIVTIG 638
+TY + WL V A +++PVY+YFN WT C+ + T +LC D R +G++
Sbjct: 119 GITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWN 178
Query: 639 E-EKKICTVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDA 815
K+C N L +C++ E MTFH ++ +++ + N+A +K
Sbjct: 179 AFPGKVC--GSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLM 236
Query: 816 CRMQKY 833
R K+
Sbjct: 237 GRGTKF 242
>ref|XP_003360453.1| PREDICTED: myelin proteolipid protein-like isoform 1 [Sus scrofa].
Length = 277
Score = 182 bits (463), Expect = 2e-46
Identities = 100/281 (35%), Positives = 150/281 (53%), Gaps = 41/281 (14%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR------- 452
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT 118
Query: 453 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF 548
C+ W F+ +TY + WL V A +++PVY+YF
Sbjct: 119 GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYF 178
Query: 549 NLWTICR-----NTTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT 710
N WT C+ + T +LC D R +G++ K+C N L +C++ E MT
Sbjct: 179 NTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT 236
Query: 711 FHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
FH ++ +++ + N+A +K R K+
Sbjct: 237 FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
>ref|NP_999139.1| myelin proteolipid protein [Sus scrofa].
Length = 277
Score = 182 bits (463), Expect = 2e-46
Identities = 100/281 (35%), Positives = 150/281 (53%), Gaps = 41/281 (14%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR------- 452
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT 118
Query: 453 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF 548
C+ W F+ +TY + WL V A +++PVY+YF
Sbjct: 119 GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYF 178
Query: 549 NLWTICR-----NTTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT 710
N WT C+ + T +LC D R +G++ K+C N L +C++ E MT
Sbjct: 179 NTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT 236
Query: 711 FHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
FH ++ +++ + N+A +K R K+
Sbjct: 237 FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,145,971
Number of extensions: 643663
Number of successful extensions: 2097
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2083
Number of HSP's successfully gapped: 8
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008311
(1001 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_705809.1| neuronal membrane glycoprotein M6-a [Mus muscul... 508 e-144
Alignment gi|NP_075611.1| neuronal membrane glycoprotein M6-b isoform 4 [... 287 1e-77
Alignment gi|NP_001171429.1| neuronal membrane glycoprotein M6-b isoform ... 285 4e-77
Alignment gi|NP_001171426.1| neuronal membrane glycoprotein M6-b isoform ... 285 4e-77
Alignment gi|NP_001171433.1| neuronal membrane glycoprotein M6-b isoform ... 225 5e-59
Alignment gi|NP_001171432.1| neuronal membrane glycoprotein M6-b isoform ... 225 5e-59
Alignment gi|NP_001171431.1| neuronal membrane glycoprotein M6-b isoform ... 223 2e-58
Alignment gi|NP_001171430.1| neuronal membrane glycoprotein M6-b isoform ... 223 2e-58
Alignment gi|NP_001171428.1| neuronal membrane glycoprotein M6-b isoform ... 223 2e-58
Alignment gi|NP_001171427.1| neuronal membrane glycoprotein M6-b isoform ... 223 2e-58
>ref|NP_705809.1| neuronal membrane glycoprotein M6-a [Mus musculus].
Length = 278
Score = 508 bits (1309), Expect = e-144
Identities = 247/266 (92%), Positives = 249/266 (93%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFE+ARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFELARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 656
LTYLFMLAWLGVTAFTSLPVYMYFN+WTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNVWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 192
Query: 657 TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKYE 836
T SENFLRMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKYE
Sbjct: 193 TASENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYE 252
Query: 837 DIKSKEEQELHDIHSTRSKERLNAYT 914
DIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 DIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|NP_075611.1| neuronal membrane glycoprotein M6-b isoform 4 [Mus musculus].
Length = 269
Score = 287 bits (734), Expect = 1e-77
Identities = 141/277 (50%), Positives = 196/277 (70%), Gaps = 10/277 (3%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDH 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 473
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 59 ALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFV 118
Query: 474 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIV 629
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 119 FLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGII 176
Query: 630 TIGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAY 803
KIC + EN +C + E M++H ++H+LM+LS+NWAY
Sbjct: 177 PWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAY 233
Query: 804 VKDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 914
+KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 234 LKDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 269
>ref|NP_001171429.1| neuronal membrane glycoprotein M6-b isoform 3 [Mus musculus].
Length = 288
Score = 285 bits (729), Expect = 4e-77
Identities = 140/276 (50%), Positives = 195/276 (70%), Gaps = 10/276 (3%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 78
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 79 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 138
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 139 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGIIP 196
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++H+LM+LS+NWAY+
Sbjct: 197 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 253
Query: 807 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 914
KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 254 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 288
>ref|NP_001171426.1| neuronal membrane glycoprotein M6-b isoform 1 [Mus musculus].
Length = 328
Score = 285 bits (729), Expect = 4e-77
Identities = 140/276 (50%), Positives = 195/276 (70%), Gaps = 10/276 (3%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 118
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGIIP 236
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++H+LM+LS+NWAY+
Sbjct: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 293
Query: 807 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 914
KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 294 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 328
>ref|NP_001171433.1| neuronal membrane glycoprotein M6-b isoform 6 [Mus musculus].
Length = 246
Score = 225 bits (573), Expect = 5e-59
Identities = 111/242 (45%), Positives = 161/242 (66%), Gaps = 10/242 (4%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDH 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 473
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 59 ALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFV 118
Query: 474 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIV 629
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 119 FLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGII 176
Query: 630 TIGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAY 803
KIC + EN +C + E M++H ++ Y+M + N+A
Sbjct: 177 PWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAV 233
Query: 804 VK 809
+K
Sbjct: 234 LK 235
>ref|NP_001171432.1| neuronal membrane glycoprotein M6-b isoform 6 [Mus musculus].
Length = 246
Score = 225 bits (573), Expect = 5e-59
Identities = 111/242 (45%), Positives = 161/242 (66%), Gaps = 10/242 (4%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDH 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 473
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 59 ALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFV 118
Query: 474 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIV 629
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 119 FLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGII 176
Query: 630 TIGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAY 803
KIC + EN +C + E M++H ++ Y+M + N+A
Sbjct: 177 PWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAV 233
Query: 804 VK 809
+K
Sbjct: 234 LK 235
>ref|NP_001171431.1| neuronal membrane glycoprotein M6-b isoform 5 [Mus musculus].
Length = 265
Score = 223 bits (568), Expect = 2e-58
Identities = 110/241 (45%), Positives = 160/241 (66%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 78
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 79 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 138
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 139 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGIIP 196
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 197 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 253
Query: 807 K 809
K
Sbjct: 254 K 254
>ref|NP_001171430.1| neuronal membrane glycoprotein M6-b isoform 5 [Mus musculus].
Length = 265
Score = 223 bits (568), Expect = 2e-58
Identities = 110/241 (45%), Positives = 160/241 (66%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 78
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 79 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 138
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 139 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGIIP 196
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 197 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 253
Query: 807 K 809
K
Sbjct: 254 K 254
>ref|NP_001171428.1| neuronal membrane glycoprotein M6-b isoform 2 [Mus musculus].
Length = 305
Score = 223 bits (568), Expect = 2e-58
Identities = 110/241 (45%), Positives = 160/241 (66%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 118
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGIIP 236
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 293
Query: 807 K 809
K
Sbjct: 294 K 294
>ref|NP_001171427.1| neuronal membrane glycoprotein M6-b isoform 2 [Mus musculus].
Length = 305
Score = 223 bits (568), Expect = 2e-58
Identities = 110/241 (45%), Positives = 160/241 (66%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + D
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNTSDHA 118
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C T+ VE +C+D+RQ+GI+
Sbjct: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVE--QICVDVRQYGIIP 236
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 293
Query: 807 K 809
K
Sbjct: 294 K 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,924,362
Number of extensions: 877545
Number of successful extensions: 2722
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2687
Number of HSP's successfully gapped: 11
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008311
(1001 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_963886.1| neuronal membrane glycoprotein M6-a isoform 3 [... 514 e-146
Alignment gi|NP_963885.1| neuronal membrane glycoprotein M6-a isoform 2 [... 512 e-145
Alignment gi|NP_005268.1| neuronal membrane glycoprotein M6-a isoform 1 [... 512 e-145
Alignment gi|NP_001001995.1| neuronal membrane glycoprotein M6-b isoform ... 288 4e-78
Alignment gi|NP_001001994.1| neuronal membrane glycoprotein M6-b isoform ... 228 5e-60
Alignment gi|NP_001001996.1| neuronal membrane glycoprotein M6-b isoform ... 226 2e-59
Alignment gi|NP_005269.1| neuronal membrane glycoprotein M6-b isoform 3 [... 226 2e-59
Alignment gi|NP_955772.1| myelin proteolipid protein isoform 2 [Homo sapi... 198 6e-51
Alignment gi|NP_000524.3| myelin proteolipid protein isoform 1 [Homo sapi... 182 3e-46
Alignment gi|NP_001122306.1| myelin proteolipid protein isoform 1 [Homo s... 182 3e-46
>ref|NP_963886.1| neuronal membrane glycoprotein M6-a isoform 3 [Homo sapiens].
Length = 267
Score = 514 bits (1324), Expect = e-146
Identities = 251/267 (94%), Positives = 251/267 (94%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDT
Sbjct: 1 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDT 60
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 473
LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI
Sbjct: 61 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 120
Query: 474 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKI 653
MLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKI
Sbjct: 121 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKI 180
Query: 654 CTVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
CTVSENFLRMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKY
Sbjct: 181 CTVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKY 240
Query: 834 EDIKSKEEQELHDIHSTRSKERLNAYT 914
EDIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 241 EDIKSKEEQELHDIHSTRSKERLNAYT 267
>ref|NP_963885.1| neuronal membrane glycoprotein M6-a isoform 2 [Homo sapiens].
Length = 278
Score = 512 bits (1319), Expect = e-145
Identities = 250/266 (93%), Positives = 250/266 (93%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 656
LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 192
Query: 657 TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKYE 836
TVSENFLRMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKYE
Sbjct: 193 TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYE 252
Query: 837 DIKSKEEQELHDIHSTRSKERLNAYT 914
DIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 DIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|NP_005268.1| neuronal membrane glycoprotein M6-a isoform 1 [Homo sapiens].
Length = 278
Score = 512 bits (1319), Expect = e-145
Identities = 250/266 (93%), Positives = 250/266 (93%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTV ILQTYFEMARTAGDTL
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 656
LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTICRNTTLVEGANLCLDLRQFGIVTIGEEKKIC 192
Query: 657 TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKYE 836
TVSENFLRMCESTELNMTFH MVHYLMVLSANWAYVKDACRMQKYE
Sbjct: 193 TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYVKDACRMQKYE 252
Query: 837 DIKSKEEQELHDIHSTRSKERLNAYT 914
DIKSKEEQELHDIHSTRSKERLNAYT
Sbjct: 253 DIKSKEEQELHDIHSTRSKERLNAYT 278
>ref|NP_001001995.1| neuronal membrane glycoprotein M6-b isoform 1 [Homo sapiens].
Length = 328
Score = 288 bits (738), Expect = 4e-78
Identities = 142/276 (51%), Positives = 196/276 (71%), Gaps = 10/276 (3%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + A D
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNASDHA 118
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C TT VE +C+D+RQ+GI+
Sbjct: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVE--QICVDIRQYGIIP 236
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++H+LM+LS+NWAY+
Sbjct: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYL 293
Query: 807 KDACRMQKYEDIKSKEEQELHDIHSTRSKERLNAYT 914
KDA +MQ Y+DIK+KEEQEL DI S RSKE+LN+YT
Sbjct: 294 KDASKMQAYQDIKAKEEQELQDIQS-RSKEQLNSYT 328
>ref|NP_001001994.1| neuronal membrane glycoprotein M6-b isoform 4 [Homo sapiens].
Length = 246
Score = 228 bits (582), Expect = 5e-60
Identities = 113/242 (46%), Positives = 162/242 (66%), Gaps = 10/242 (4%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MGCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + A D
Sbjct: 1 MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNASDH 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 473
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 59 ALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFV 118
Query: 474 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIV 629
LTY+ +AWLGV F+++PV+M++N+W+ C TT VE +C+D+RQ+GI+
Sbjct: 119 FLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVE--QICVDIRQYGII 176
Query: 630 TIGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAY 803
KIC + EN +C + E M++H ++ Y+M + N+A
Sbjct: 177 PWNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAV 233
Query: 804 VK 809
+K
Sbjct: 234 LK 235
>ref|NP_001001996.1| neuronal membrane glycoprotein M6-b isoform 2 [Homo sapiens].
Length = 305
Score = 226 bits (577), Expect = 2e-59
Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + A D
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNASDHA 118
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C TT VE +C+D+RQ+GI+
Sbjct: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVE--QICVDIRQYGIIP 236
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 293
Query: 807 K 809
K
Sbjct: 294 K 294
>ref|NP_005269.1| neuronal membrane glycoprotein M6-b isoform 3 [Homo sapiens].
Length = 265
Score = 226 bits (577), Expect = 2e-59
Identities = 112/241 (46%), Positives = 161/241 (66%), Gaps = 10/241 (4%)
Frame = +3
Query: 117 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDTL 296
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + A D
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNASDHA 78
Query: 297 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 476
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 79 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 138
Query: 477 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 632
LTY+ +AWLGV F+++PV+M++N+W+ C TT VE +C+D+RQ+GI+
Sbjct: 139 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVE--QICVDIRQYGIIP 196
Query: 633 IGE-EKKIC-TVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYV 806
KIC + EN +C + E M++H ++ Y+M + N+A +
Sbjct: 197 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 253
Query: 807 K 809
K
Sbjct: 254 K 254
>ref|NP_955772.1| myelin proteolipid protein isoform 2 [Homo sapiens].
Length = 242
Score = 198 bits (504), Expect = 6e-51
Identities = 100/246 (40%), Positives = 150/246 (60%), Gaps = 6/246 (2%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFI 473
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+ +SA F+
Sbjct: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFV 118
Query: 474 MLTYLFMLAWLGVTAFTSLPVYMYFNLWTICR-----NTTLVEGANLCLDLRQFGIVTIG 638
+TY + WL V A +++PVY+YFN WT C+ + T +LC D R +G++
Sbjct: 119 GITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWN 178
Query: 639 E-EKKICTVSENFLRMCESTELNMTFHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDA 815
K+C N L +C++ E MTFH ++ +++ + N+A +K
Sbjct: 179 AFPGKVC--GSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLM 236
Query: 816 CRMQKY 833
R K+
Sbjct: 237 GRGTKF 242
>ref|NP_000524.3| myelin proteolipid protein isoform 1 [Homo sapiens].
Length = 277
Score = 182 bits (463), Expect = 3e-46
Identities = 100/281 (35%), Positives = 150/281 (53%), Gaps = 41/281 (14%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR------- 452
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT 118
Query: 453 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF 548
C+ W F+ +TY + WL V A +++PVY+YF
Sbjct: 119 GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYF 178
Query: 549 NLWTICR-----NTTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT 710
N WT C+ + T +LC D R +G++ K+C N L +C++ E MT
Sbjct: 179 NTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT 236
Query: 711 FHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
FH ++ +++ + N+A +K R K+
Sbjct: 237 FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
>ref|NP_001122306.1| myelin proteolipid protein isoform 1 [Homo sapiens].
Length = 277
Score = 182 bits (463), Expect = 3e-46
Identities = 100/281 (35%), Positives = 150/281 (53%), Gaps = 41/281 (14%)
Frame = +3
Query: 114 MGCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVTILQTYFEMARTAGDT 293
MG ECC +CL G P+ASL+AT L + GVALFCGCGHEAL+GT +++TYF ++ D
Sbjct: 1 MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYF--SKNYQDY 58
Query: 294 LDVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGR------- 452
+ +I F+YVIYG A+ FF+YG LL+ EGF+TTGA++ ++GD+K T CG+
Sbjct: 59 EYLINVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVT 118
Query: 453 ----------------------CVSAW------FIMLTYLFMLAWLGVTAFTSLPVYMYF 548
C+ W F+ +TY + WL V A +++PVY+YF
Sbjct: 119 GGQKGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYF 178
Query: 549 NLWTICR-----NTTLVEGANLCLDLRQFGIVTIGE-EKKICTVSENFLRMCESTELNMT 710
N WT C+ + T +LC D R +G++ K+C N L +C++ E MT
Sbjct: 179 NTWTTCQSIAFPSKTSASIGSLCADARMYGVLPWNAFPGKVC--GSNLLSICKTAEFQMT 236
Query: 711 FHXXXXXXXXXXXXXXXMVHYLMVLSANWAYVKDACRMQKY 833
FH ++ +++ + N+A +K R K+
Sbjct: 237 FHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF 277
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,589,987
Number of extensions: 1029478
Number of successful extensions: 3420
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3403
Number of HSP's successfully gapped: 10
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008311
(1001 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118530.1| Sus scrofa unplaced genomic scaffold ChrUScaf867 400 e-109
Sscrofa_Chr15 400 e-109
gb|GL893732.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 143 2e-31
>gb|JH118530.1| Sus scrofa unplaced genomic scaffold ChrUScaf867
Length = 144700
Score = 400 bits (202), Expect = e-109
Identities = 218/222 (98%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 764 ggtccactaccttatggttctgtctgccaactgggcttatgtgaaggatgcctgccggat 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26056 ggtccactaccttatggttctgtctgccaactgggcttatgtgaaggatgcctgccggat 25997
Query: 824 gcagaagtatgaggacatcaagtcaaaggaggagcaagagcttcatgacatccactctac 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25996 gcagaagtatgaggacatcaagtcaaaggaggagcaagagcttcatgacatccactctac 25937
Query: 884 tcgctccaaagagcggctcaatgcatacacataaacacctgcccgtccttttca-cattc 942
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 25936 tcgctccaaagagcggctcaatgcatacacataaacacctgcccgtcctttccaccattc 25877
Query: 943 agatgatttgatgtttaactaaaggccatcccaccatccaac 984
|||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 25876 agatgaattgatgtttaactaaaggccatccaaccatccaac 25835
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 117 gggtgttttgagtgctgtattaaatgcctgggaggcatcccctacgcctctctgattgcc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63775 gggtgttttgagtgctgtattaaatgcctgggaggcatcccctacgcctctctgattgcc 63716
Query: 177 accatcctgctctatgctggcgttgccctgttctgcggctgtggtcatgaagcactttct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63715 accatcctgctctatgctggcgttgccctgttctgcggctgtggtcatgaagcactttct 63656
Query: 237 ggaactgtcaccatcctgcaaacctatttcgaaatggccagaactgctggagatacgctg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63655 ggaactgtcaccatcctgcaaacctatttcgaaatggccagaactgctggagatacgctg 63596
Query: 297 gacgtttttaccatg 311
|||||||||||||||
Sbjct: 63595 gacgtttttaccatg 63581
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 311 gattgacatcttcaagtatgtgatctacggcattgcagctgcgttctttgtgtacggcat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49152 gattgacatcttcaagtatgtgatctacggcattgcagctgcgttctttgtgtacggcat 49093
Query: 371 cttgctgatggtggaaggtttcttcacgactggtgccatcaaagacctctacggggattt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49092 cttgctgatggtggaaggtttcttcacgactggtgccatcaaagacctctacggggattt 49033
Query: 431 caaaatcaccacttgtggcagatgtgtgagcgcctgg 467
|||||||||||||||||||||||||||||||||||||
Sbjct: 49032 caaaatcaccacttgtggcagatgtgtgagcgcctgg 48996
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 467 gtttattatgctgacctaccttttcatgctggcctggctgggagtcaccgctttcacctc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33833 gtttattatgctgacctaccttttcatgctggcctggctgggagtcaccgctttcacctc 33774
Query: 527 actgcctgtttacatgtacttcaacctgtggaccatctgccgaaatactaccttggtgga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33773 actgcctgtttacatgtacttcaacctgtggaccatctgccgaaatactaccttggtgga 33714
Query: 587 gggagcgaatctttgcctggaccttcgacagtttgg 622
||||||||||||||||||||||||||||||||||||
Sbjct: 33713 gggagcgaatctttgcctggaccttcgacagtttgg 33678
>Sscrofa_Chr15
|| Length = 157681621
Score = 400 bits (202), Expect = e-109
Identities = 218/222 (98%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 764 ggtccactaccttatggttctgtctgccaactgggcttatgtgaaggatgcctgccggat 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43949003 ggtccactaccttatggttctgtctgccaactgggcttatgtgaaggatgcctgccggat 43949062
Query: 824 gcagaagtatgaggacatcaagtcaaaggaggagcaagagcttcatgacatccactctac 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43949063 gcagaagtatgaggacatcaagtcaaaggaggagcaagagcttcatgacatccactctac 43949122
Query: 884 tcgctccaaagagcggctcaatgcatacacataaacacctgcccgtccttttca-cattc 942
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 43949123 tcgctccaaagagcggctcaatgcatacacataaacacctgcccgtcctttccaccattc 43949182
Query: 943 agatgatttgatgtttaactaaaggccatcccaccatccaac 984
|||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 43949183 agatgaattgatgtttaactaaaggccatccaaccatccaac 43949224
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 117 gggtgttttgagtgctgtattaaatgcctgggaggcatcccctacgcctctctgattgcc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43999617 gggtgttttgagtgctgtattaaatgcctgggaggcatcccctacgcctctctgattgcc 43999558
Query: 177 accatcctgctctatgctggcgttgccctgttctgcggctgtggtcatgaagcactttct 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43999557 accatcctgctctatgctggcgttgccctgttctgcggctgtggtcatgaagcactttct 43999498
Query: 237 ggaactgtcaccatcctgcaaacctatttcgaaatggccagaactgctggagatacgctg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43999497 ggaactgtcaccatcctgcaaacctatttcgaaatggccagaactgctggagatacgctg 43999438
Query: 297 gacgtttttaccatg 311
|||||||||||||||
Sbjct: 43999437 gacgtttttaccatg 43999423
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 311 gattgacatcttcaagtatgtgatctacggcattgcagctgcgttctttgtgtacggcat 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43983738 gattgacatcttcaagtatgtgatctacggcattgcagctgcgttctttgtgtacggcat 43983679
Query: 371 cttgctgatggtggaaggtttcttcacgactggtgccatcaaagacctctacggggattt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43983678 cttgctgatggtggaaggtttcttcacgactggtgccatcaaagacctctacggggattt 43983619
Query: 431 caaaatcaccacttgtggcagatgtgtgagcgcctgg 467
|||||||||||||||||||||||||||||||||||||
Sbjct: 43983618 caaaatcaccacttgtggcagatgtgtgagcgcctgg 43983582
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 467 gtttattatgctgacctaccttttcatgctggcctggctgggagtcaccgctttcacctc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43936889 gtttattatgctgacctaccttttcatgctggcctggctgggagtcaccgctttcacctc 43936948
Query: 527 actgcctgtttacatgtacttcaacctgtggaccatctgccgaaatactaccttggtgga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43936949 actgcctgtttacatgtacttcaacctgtggaccatctgccgaaatactaccttggtgga 43937008
Query: 587 gggagcgaatctttgcctggaccttcgacagtttgg 622
||||||||||||||||||||||||||||||||||||
Sbjct: 43937009 gggagcgaatctttgcctggaccttcgacagtttgg 43937044
Score = 234 bits (118), Expect = 7e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 gctgtcactcgctgaggcgcgcgaagcaggagacgcgtccggagaacttggcgcagcgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44334026 gctgtcactcgctgaggcgcgcgaagcaggagacgcgtccggagaacttggcgcagcgca 44334085
Query: 61 gcgcccggctgctcgcgctcctgaggggacgcagggaagggggacgcggcaacatggg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44334086 gcgcccggctgctcgcgctcctgaggggacgcagggaagggggacgcggcaacatggg 44334143
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 621 gggatcgtgacaattggagaggaaaagaaaatttgcactgtgtctgagaatttcctgagg 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43943238 gggatcgtgacaattggagaggaaaagaaaatttgcactgtgtctgagaatttcctgagg 43943297
Query: 681 atgtgtgaatccactgag 698
||||||||||||||||||
Sbjct: 43943298 atgtgtgaatccactgag 43943315
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 697 agctgaacatgaccttccacttgttcatcgtggcacttgcaggagctggggcagcagtca 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43943841 agctgaacatgaccttccacttgttcatcgtggcacttgcaggagctggggcagcagtca 43943900
Query: 757 ttgctatggt 766
||||||||||
Sbjct: 43943901 ttgctatggt 43943910
>gb|GL893732.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2468
Length = 59818
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 7 actcgctgaggcgcgcgaagcaggagacgcgtccggagaacttggcgcagcgcagcgccc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50564 actcgctgaggcgcgcgaagcaggagacgcgtccggagaacttggcgcagcgcagcgccc 50505
Query: 67 ggctgctcgcgc 78
||||||||||||
Sbjct: 50504 ggctgctcgcgc 50493
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,616,142
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 12
Length of query: 1001
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 980
Effective length of database: 2,808,413,156
Effective search space: 2752244892880
Effective search space used: 2752244892880
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)