Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008312
(977 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776324.1| T-cell surface glycoprotein CD5 precursor [Bos ... 272 3e-77
Alignment gi|XP_002698598.1| PREDICTED: deleted in malignant brain tumors... 64 2e-10
Alignment gi|XP_588646.5| PREDICTED: deleted in malignant brain tumors 1 ... 64 2e-10
Alignment gi|XP_002704499.1| PREDICTED: WC1 isolate CH120 [Bos taurus]. 57 2e-08
Alignment gi|NP_001156885.1| scavenger receptor cysteine-rich type 1 prot... 54 2e-07
Alignment gi|XP_002698652.1| PREDICTED: mucin-like, partial [Bos taurus]. 50 2e-06
Alignment gi|NP_001177353.1| hypothetical protein LOC514534 [Bos taurus]. 49 7e-06
Alignment gi|XP_002704267.1| PREDICTED: WC1-like [Bos taurus]. 49 7e-06
Alignment gi|NP_001137214.1| hypothetical protein LOC751809 [Bos taurus]. 49 9e-06
>ref|NP_776324.1| T-cell surface glycoprotein CD5 precursor [Bos taurus].
Length = 495
Score = 272 bits (695), Expect(3) = 3e-77
Identities = 143/278 (51%), Positives = 172/278 (61%)
Frame = +3
Query: 69 MGSQRPPXXXXXXXXXXVISCLRGLGGLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYT 248
MGSQ P V SCL GGL +E G +RLSGS SRCQG+LEV+ + WY
Sbjct: 1 MGSQHLPLAALYLLELLVTSCL---GGLKVEVQGLTMRLSGSGSRCQGRLEVSNGTEWYA 57
Query: 249 VHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIFAHLQPFSRRWILNQIICHGQQVSFSN 428
VHSQSWG +Q P Q KLCQ+LQC PL+ + + F IICHGQ SFSN
Sbjct: 58 VHSQSWGQLSLYQVAPRQFLKLCQELQCRDPLLLSSSRYFKEVQFQKLIICHGQLGSFSN 117
Query: 429 CSLTKTNQGDPLSLVCLEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEF 608
CSL + Q D L+L+CLE R +LVA PGGLRCAG+VEF
Sbjct: 118 CSLNRGRQVDSLALICLEPPRTTAPPTTSPPTTTPEPTAPPRFQLVAEPGGLRCAGVVEF 177
Query: 609 YRGSLGGTIGLESHERLEEPLGNVICAALQCGSFLKLLTETEAARALGPGEGRPLPVQWK 788
Y G LGGTIG+E +++ LG +ICAALQCGSFLK L ETE A+ P RPLP++W+
Sbjct: 178 YSGGLGGTIGIEPQNDIKD-LGQLICAALQCGSFLKPLPETEEAQTQKPEGQRPLPIRWE 236
Query: 789 IQNPWCVTLEECFRKVQPQAGGPVLGLVCSDFSPKCRA 902
IQNP C +LE+CFRKVQP GG LGL+CSDF PK ++
Sbjct: 237 IQNPKCTSLEQCFRKVQPWVGGQALGLICSDFQPKVQS 274
Score = 31.6 bits (70), Expect(3) = 3e-77
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 910 GHSXTCEGSVXVPQGK--QWDTLC 975
G S CEGSV V GK +WDTLC
Sbjct: 278 GGSDVCEGSVEVRSGKGQKWDTLC 301
Score = 25.8 bits (55), Expect(3) = 3e-77
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 881 FQPKVQSRLVG 913
FQPKVQSRLVG
Sbjct: 268 FQPKVQSRLVG 278
>ref|XP_002698598.1| PREDICTED: deleted in malignant brain tumors 1, partial [Bos
taurus].
Length = 1333
Score = 64.3 bits (155), Expect = 2e-10
Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 10/208 (4%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 256 ESGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGSA 307
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVC-LEXXXX 494
+ A S +L+ + C G + +CS + N + S++C
Sbjct: 308 ISAPGGARFGQGSGPIVLDDVGCSGYETYLWSCSHSPWNTHNCGHSEDASVICSASQTQS 367
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTIGLESHERLEEPL 671
LRLV GG RC G VE YRGS GT+ +S + +
Sbjct: 368 TVVPDWWYPTTDYGTESGLALRLV--NGGDRCQGRVEVLYRGS-WGTVCDDSWDTND--- 421
Query: 672 GNVICAALQCGSFLKLLTETEAARALGP 755
NV+C L CGS + + GP
Sbjct: 422 ANVVCRQLGCGSAISAPGGARFGQGSGP 449
Score = 63.9 bits (154), Expect = 2e-10
Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 10/208 (4%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 129 ESGLALRLVNGEHRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGLA 180
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVC-LEXXXX 494
+ A S +L+ + C G + +CS + N + S++C +
Sbjct: 181 ISAPGNARFGQGSGPIVLDDVGCSGYETYLWSCSHSPWNSHNCGHSEDASVICSADQTQS 240
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTIGLESHERLEEPL 671
LRLV GG RC G VE YRGS GT+ +S + +
Sbjct: 241 TVVPDWWYPTTAYGTESGLALRLV--NGGDRCQGRVEVLYRGS-WGTVCDDSWDTND--- 294
Query: 672 GNVICAALQCGSFLKLLTETEAARALGP 755
NV+C L CGS + + GP
Sbjct: 295 ANVVCRQLGCGSAISAPGGARFGQGSGP 322
Score = 59.7 bits (143), Expect = 4e-09
Identities = 57/208 (27%), Positives = 84/208 (40%), Gaps = 10/208 (4%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 2 ESGLALRLVNGEHRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGSA 53
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVCL-EXXXX 494
+ A S +L+ + C G + +CS + N + S++C
Sbjct: 54 ISAPGGARFGQGSGPIVLDDVGCSGYETYLWSCSHSPWNSHNCGHSEDASVICSGAQTQS 113
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTIGLESHERLEEPL 671
LRLV G RC G VE YRGS GT+ +S + +
Sbjct: 114 TVVPDWWYPTTHYGTESGLALRLVNGEH--RCQGRVEVLYRGS-WGTVCDDSWDTND--- 167
Query: 672 GNVICAALQCGSFLKLLTETEAARALGP 755
NV+C L CG + + GP
Sbjct: 168 ANVVCRQLGCGLAISAPGNARFGQGSGP 195
Score = 50.4 bits (119), Expect = 2e-06
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 510 ESGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGWA 561
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVC 476
+ A S +L+ + C G + +CS + N + S++C
Sbjct: 562 ISAPGDARFGQGSGPIVLDDVGCSGHETYLWSCSHSPWNSHNCGHSEDASVIC 614
>ref|XP_588646.5| PREDICTED: deleted in malignant brain tumors 1 [Bos taurus].
Length = 1719
Score = 64.3 bits (155), Expect = 2e-10
Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 10/208 (4%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 259 ESGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGSA 310
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVC-LEXXXX 494
+ A S +L+ + C G + +CS + N + S++C
Sbjct: 311 ISAPGGARFGQGSGPIVLDDVGCSGYETYLWSCSHSPWNTHNCGHSEDASVICSASQTQS 370
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTIGLESHERLEEPL 671
LRLV GG RC G VE YRGS GT+ +S + +
Sbjct: 371 TVVPDWWYPTTDYGTESGLALRLV--NGGDRCQGRVEVLYRGS-WGTVCDDSWDTND--- 424
Query: 672 GNVICAALQCGSFLKLLTETEAARALGP 755
NV+C L CGS + + GP
Sbjct: 425 ANVVCRQLGCGSAISAPGGARFGQGSGP 452
Score = 62.4 bits (150), Expect = 6e-10
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 9/207 (4%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 758 ESGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGSA 809
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVC-LEXXXX 494
+ A S +L+ + C G + +CS + N + S++C
Sbjct: 810 ISAPGGARFGQGSGPIVLDDVGCSGYETYLWSCSHSPWNTHNCGHSEDASVICSASQTQS 869
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEEPLG 674
LRLV G RC G VE G GT+ +S + +
Sbjct: 870 TVVPDWWYPTTDYGTESGLALRLVNGSD--RCQGRVEVLYGGSWGTVCDDSWDTND---A 924
Query: 675 NVICAALQCGSFLKLLTETEAARALGP 755
NV+C L CG + + + GP
Sbjct: 925 NVVCRQLGCGWAISAPGDARFGQGSGP 951
Score = 62.0 bits (149), Expect = 8e-10
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 8/206 (3%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 513 ESGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGWA 564
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVCLEXXXXX 497
+ A S +L+ + C G + +CS + N + S++C
Sbjct: 565 ISAPGDARFGQGSGPIVLDDVGCSGHETYLWSCSHSPWNSHNCGHSEDASVIC------- 617
Query: 498 XXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEEPLGN 677
LRLV G RC G VE G GT+ +S + + N
Sbjct: 618 -SASQTQSTVVPGTESGLALRLVNGSD--RCQGRVEVLYGGSWGTVCDDSWDTND---AN 671
Query: 678 VICAALQCGSFLKLLTETEAARALGP 755
V+C L CG + + + GP
Sbjct: 672 VVCRQLGCGWAISAPGDARFGQGSGP 697
Score = 60.5 bits (145), Expect = 2e-09
Identities = 57/207 (27%), Positives = 84/207 (40%), Gaps = 9/207 (4%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 30 ESGLALRLVNGKHRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGSA 81
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVCLEXXXXX 497
+ A S +L+ + C G + +CS + N + S++C
Sbjct: 82 ISAPGGARFGQGSGPIVLDDVGCSGYETYLWSCSHSPWNSHNCGHSEDASVIC-----SG 136
Query: 498 XXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTIGLESHERLEEPLG 674
LRLV G RC G VE YRGS GT+ +S + +
Sbjct: 137 TRPTLILPTFAVGTESGLALRLVNGEH--RCQGRVEVLYRGS-WGTVCDDSWDTND---A 190
Query: 675 NVICAALQCGSFLKLLTETEAARALGP 755
NV+C L CG + + GP
Sbjct: 191 NVVCRQLGCGLAISAPGNARFGQGSGP 217
>ref|XP_002704499.1| PREDICTED: WC1 isolate CH120 [Bos taurus].
Length = 1454
Score = 57.0 bits (136), Expect = 2e-08
Identities = 52/197 (26%), Positives = 74/197 (37%), Gaps = 3/197 (1%)
Frame = +3
Query: 141 LGGLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQ 320
+GG +LE +RL RC+G++EV ++ W TV++ WG +A+ +C+
Sbjct: 21 VGGQDLE-----LRLKDGGHRCEGRVEVKHQGEWGTVNNYKWGL--------EEAAVVCR 67
Query: 321 DLQCG---QPLIFAHLQPFSRRWILNQIICHGQQVSFSNCSLTKTNQGDPLSLVCLEXXX 491
L CG L H P N I C G + + CS P L
Sbjct: 68 QLGCGAAVDALQRVHFGPAVGPIWFNVIYCKGTESDITECSYPTVKDYRPEGL------- 120
Query: 492 XXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEEPL 671
+RL G G C+G VE + G + S P
Sbjct: 121 --------SHDQDAGVVCSGFMRLAEGDG--PCSGRVEVHSGKDWTPV---SDGNFTFPT 167
Query: 672 GNVICAALQCGSFLKLL 722
VICA L+CG L +L
Sbjct: 168 AQVICAELRCGKVLSVL 184
>ref|NP_001156885.1| scavenger receptor cysteine-rich type 1 protein M130 [Bos taurus].
Length = 1129
Score = 53.9 bits (128), Expect = 2e-07
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 19/212 (8%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIFAH 356
VRL G ++ C+G++EV TW + + W D A LCQ L+CG
Sbjct: 577 VRLVGGNTPCEGRVEVKILGTWGPLCNSHW--------DMEDAHVLCQQLKCGVAASIPG 628
Query: 357 LQPFSR----RWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVC----------L 479
PF + W + C G + +C +T +G S++C
Sbjct: 629 RAPFGKGSGQPW-RHMFHCTGTEQHMGDCPVTALGASLCPEGQVASVICSGNRSQTLYPC 687
Query: 480 EXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERL 659
+LRLV G G RCAG +E Y GTI +S + L
Sbjct: 688 NSSSSDPESSVVLEENGVPCIGSGQLRLVNGGG--RCAGRIEVYHEGSWGTICDDSWD-L 744
Query: 660 EEPLGNVICAALQCGSFLKLLTETEAARALGP 755
++ +V+C L CG + GP
Sbjct: 745 DD--AHVVCRQLGCGVAINATGSAHFGEGSGP 774
>ref|XP_002698652.1| PREDICTED: mucin-like, partial [Bos taurus].
Length = 192
Score = 50.4 bits (119), Expect = 2e-06
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+SG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 87 ESGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGWA 138
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVC 476
+ A S +L+ + C G + +CS + N + S++C
Sbjct: 139 ISAPGDARFGQGSGPIVLDDVGCSGHETYLWSCSHSPWNSHNCGHSEDASVIC 191
>ref|NP_001177353.1| hypothetical protein LOC514534 [Bos taurus].
Length = 1457
Score = 48.9 bits (115), Expect = 7e-06
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQ---PLI 347
+RL G + C G++EV + +W TV SW +A +CQ L CGQ L
Sbjct: 1158 LRLRGGDTECSGRVEVWHSGSWGTVCDDSWSL--------EEAKVVCQQLGCGQALEALQ 1209
Query: 348 FAHLQPFSRRWILNQIICHGQQVSFSNCSLTKTNQGD 458
A P + L+++ C GQ+ S +C+ Q D
Sbjct: 1210 AATFGPGNGSIWLDEVQCRGQESSLWDCAAEPWGQSD 1246
>ref|XP_002704267.1| PREDICTED: WC1-like [Bos taurus].
Length = 1625
Score = 48.9 bits (115), Expect = 7e-06
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPL---I 347
+RL G S+C G++EV + +W TV SW ++A +CQ L CGQ L
Sbjct: 1152 LRLRGGDSKCSGRVEVWHSGSWGTVCDDSWSL--------AEAEVVCQQLGCGQALEAVQ 1203
Query: 348 FAHLQPFSRRWILNQIICHGQQVSFSNCSLTKTNQGD 458
A P + L+++ C G++ S +C+ Q D
Sbjct: 1204 SAAFGPGNGSIWLDEVRCGGRESSLWDCAAEPWGQSD 1240
>ref|NP_001137214.1| hypothetical protein LOC751809 [Bos taurus].
Length = 835
Score = 48.5 bits (114), Expect = 9e-06
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIFAH 356
+RL G S C G++EV + +W TV SW ++A +CQ L CGQ L
Sbjct: 600 LRLRGGDSECSGRVEVWHSGSWGTVCDDSWSL--------AEAEVVCQQLGCGQALEAVQ 651
Query: 357 LQPF----SRRWILNQIICHGQQVSFSNCSLTKTNQGD 458
F W L+++ C G++ S +C+ Q D
Sbjct: 652 AATFGPGNGSIW-LDEVRCGGRESSLWDCAAEPWGQSD 688
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,189,433
Number of extensions: 1320000
Number of successful extensions: 6153
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5996
Number of HSP's successfully gapped: 19
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008312
(977 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855167.1| PREDICTED: similar to T-cell surface glycoprote... 228 2e-65
Alignment gi|XP_853855.1| PREDICTED: similar to deleted in malignant brai... 62 6e-10
Alignment gi|XP_852881.1| PREDICTED: similar to deleted in malignant brai... 60 2e-09
Alignment gi|XP_853838.1| PREDICTED: similar to deleted in malignant brai... 60 3e-09
Alignment gi|XP_548815.2| PREDICTED: similar to scavenger receptor cystei... 54 2e-07
Alignment gi|XP_544051.2| PREDICTED: similar to deleted in malignant brai... 52 7e-07
Alignment gi|XP_852911.1| PREDICTED: similar to deleted in malignant brai... 51 1e-06
Alignment gi|XP_852899.1| PREDICTED: similar to deleted in malignant brai... 51 1e-06
Alignment gi|XP_544053.2| PREDICTED: similar to deleted in malignant brai... 50 3e-06
Alignment gi|XP_544052.2| PREDICTED: similar to deleted in malignant brai... 50 4e-06
>ref|XP_855167.1| PREDICTED: similar to T-cell surface glycoprotein CD5 precursor
(Lymphocyte glycoprotein T1/Leu-1) (Lymphocyte antigen
CD5) [Canis familiaris].
Length = 535
Score = 228 bits (582), Expect(3) = 2e-65
Identities = 122/249 (48%), Positives = 148/249 (59%), Gaps = 5/249 (2%)
Frame = +3
Query: 171 FMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQ--EDPSQASKLCQDLQCGQPL 344
F VRL GSSSRCQGQLEV +WYTV S+SW WS E+ A KLC+ L CG+ L
Sbjct: 70 FQVRLKGSSSRCQGQLEVCIGKSWYTVSSRSWSWSQSPNPWEELRLALKLCRRLDCGEAL 129
Query: 345 IFAHLQPFSRRWILNQIICHGQQVSFSNCSLTKTNQGDPLSLVCLEXXXXXXXXXXXXXX 524
A+ F+ I CHG SFSNC+ + +Q +PL L+C E
Sbjct: 130 AMAYFPAFNSPQ--KPITCHGHVGSFSNCNTSVASQSNPLGLICQEPPKTTPPPTSPPPT 187
Query: 525 XXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEE---PLGNVICAAL 695
RL+LVA PG LRCAG+VE Y GSLGG I E+ +R ++ L N ICAAL
Sbjct: 188 TTPEPTAPPRLQLVARPGALRCAGVVELYYGSLGGAISYEAQDRTQDRTQDLENRICAAL 247
Query: 696 QCGSFLKLLTETEAARALGPGEGRPLPVQWKIQNPWCVTLEECFRKVQPQAGGPVLGLVC 875
QCGSFLKLL E E AR PGE +PLP++WKIQN C +LE+CFRKV P G L +VC
Sbjct: 248 QCGSFLKLLPEAETARTQDPGENKPLPIRWKIQNRSCASLEQCFRKVSPYEGSQALAIVC 307
Query: 876 SDFSPKCRA 902
S F PK ++
Sbjct: 308 SGFQPKVQS 316
Score = 35.0 bits (79), Expect(3) = 2e-65
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 910 GHSXTCEGSVXVPQGKQWDTLC 975
G S CEGSV V QG+QW+ LC
Sbjct: 320 GGSGLCEGSVEVRQGRQWEVLC 341
Score = 25.8 bits (55), Expect(3) = 2e-65
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 881 FQPKVQSRLVG 913
FQPKVQSRLVG
Sbjct: 310 FQPKVQSRLVG 320
>ref|XP_853855.1| PREDICTED: similar to deleted in malignant brain tumors 1 isoform c
precursor [Canis familiaris].
Length = 335
Score = 62.4 bits (150), Expect = 6e-10
Identities = 58/195 (29%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG +RL RCQG++EV Y+ +W TV W D + A+ +C+ L CG
Sbjct: 65 DSGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDGW--------DTNDANVVCRQLGCGWA 116
Query: 342 LIFAHLQPF---SRRWILNQIICHGQQVSFSNCSLTKTNQG-----DPLSLVCLE----- 482
H F S +L+ + C G + +CS + N + S++C E
Sbjct: 117 TSAPHNAHFGQGSGPIVLDDVSCSGYESYLWSCSHSGWNSHNCGHYEDASVICSEQEAYT 176
Query: 483 XXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTIGLESHERL 659
LRLV GG RC G VE YRGS GT+ +S +
Sbjct: 177 APPPPQVVSVLLYQTTGIFDSGLALRLV--NGGDRCQGRVEVLYRGS-WGTVCDDSWDTN 233
Query: 660 EEPLGNVICAALQCG 704
+ NV+C L CG
Sbjct: 234 D---ANVVCRQLGCG 245
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 196 DSGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCG-- 245
Query: 342 LIFAHLQPFSRRW-------ILNQIICHGQQVSFSNCS 434
+A P + R+ +L+ + C G + +CS
Sbjct: 246 --WATSAPGNARFGQGSGPIVLDDVRCSGHESYLWSCS 281
>ref|XP_852881.1| PREDICTED: similar to deleted in malignant brain tumors 1 isoform b
precursor [Canis familiaris].
Length = 371
Score = 60.5 bits (145), Expect = 2e-09
Identities = 59/205 (28%), Positives = 84/205 (40%), Gaps = 24/205 (11%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 50 DSGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCG-- 99
Query: 342 LIFAHLQPFSRRW-------ILNQIICHGQQVSFSNCSLTKTN-----QGDPLSLVC--- 476
+A P + R+ +L+ + C G + +CS N + S++C
Sbjct: 100 --WATSAPGNARFGQGSGPIVLDDVRCSGHESYLWSCSHNGWNSHNCRHSEDASVICSGG 157
Query: 477 --------LEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGG 629
L LRLV GG RC G VE YRGS G
Sbjct: 158 SSRNLPLVLNLHPPSSWFSVLLYQTTGIFDSGLALRLV--NGGDRCQGRVEVLYRGS-WG 214
Query: 630 TIGLESHERLEEPLGNVICAALQCG 704
T+ +S + + NV+C L CG
Sbjct: 215 TVCDDSWDTND---ANVVCRQLGCG 236
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 187 DSGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCG-- 236
Query: 342 LIFAHLQPFSRRW-------ILNQIICHGQQVSFSNCS 434
+A P + R+ +L+ + C G + +CS
Sbjct: 237 --WATSAPGNARFGQGSGPIVLDDVRCSGHESYLWSCS 272
>ref|XP_853838.1| PREDICTED: similar to deleted in malignant brain tumors 1 isoform b
precursor [Canis familiaris].
Length = 501
Score = 60.1 bits (144), Expect = 3e-09
Identities = 52/190 (27%), Positives = 75/190 (39%), Gaps = 9/190 (4%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCG-- 335
DSG +RL RCQG++EV Y+ +W TV W D S A+ +C+ L CG
Sbjct: 260 DSGLALRLVSGGDRCQGRVEVLYQGSWGTVCDDDW--------DTSDANVVCRQLGCGWA 311
Query: 336 -QPLIFAHLQPFSRRWILNQIICHGQQVSFSNCS-----LTKTNQGDPLSLVC-LEXXXX 494
A+ S +L+ + C G + S +CS + + ++C
Sbjct: 312 TSATGSAYFGQGSGPIVLDNVRCSGYESSLWSCSHNGWKVHNCGHSEDAGVICSAAVSQS 371
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEEPLG 674
LRLV GG RC G VE G GT+ + + +
Sbjct: 372 TPQPERLFSCLLPGTESGLALRLV--NGGDRCQGRVEVLYGGSWGTVCDDDWDTSD---A 426
Query: 675 NVICAALQCG 704
NV+C L CG
Sbjct: 427 NVVCRQLGCG 436
Score = 55.1 bits (131), Expect = 1e-07
Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 9/208 (4%)
Frame = +3
Query: 159 EDSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQ 338
+ +G +RL S RCQG++EV Y+ W TV W D A +C+ L CG
Sbjct: 12 DGAGLPLRLVNGSDRCQGRVEVLYQGYWGTVCDDDW--------DIQDADVVCRQLGCGL 63
Query: 339 PLIF---AHLQPFSRRWILNQIICHGQQVSFSNCS-----LTKTNQGDPLSLVCLEXXXX 494
+ AH S +L + C G++ S+CS + G+ +VC
Sbjct: 64 AVSAPGGAHFGQGSGNILLGFVYCSGREPYLSSCSHGGWYNHECGHGEDAGVVC--SGRA 121
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTIGLESHERLEEPL 671
LRLV G +C G VE Y+GS GT+ + + +
Sbjct: 122 DLTPPIMMPTIYLGTELSLALRLVGGSN--QCQGRVEMLYQGS-WGTVCDDDWDIND--- 175
Query: 672 GNVICAALQCGSFLKLLTETEAARALGP 755
NV+C L CG + + GP
Sbjct: 176 ANVVCRQLGCGLAVSAPGNARFGQGSGP 203
>ref|XP_548815.2| PREDICTED: similar to scavenger receptor cysteine-rich type 1
protein M160 precursor [Canis familiaris].
Length = 987
Score = 54.3 bits (129), Expect = 2e-07
Identities = 53/204 (25%), Positives = 77/204 (37%), Gaps = 7/204 (3%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIFAH 356
+RL G SRC G+ EV+ W V +W D A+ +C L CG+
Sbjct: 420 LRLRGGHSRCDGRAEVSLDGAWGRVLDAAW--------DLRAAAVVCAQLGCGRAHRAYD 471
Query: 357 LQPFSRRWI--LNQIICHGQQVSFSNCSLTKT-----NQGDPLSLVCLEXXXXXXXXXXX 515
P SR L++ C G + + C+++++ +VC
Sbjct: 472 APPPSRALPVGLSRARCRGTETRLTQCNVSRSALVPAGTSRDAGVVC------------- 518
Query: 516 XXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEEPLGNVICAAL 695
R+RL GP RCAG VE G GT+ + + + V+C L
Sbjct: 519 --------SGSRRVRLAGGPH--RCAGRVEVLLGGAWGTVCDDGWDLRD---AQVVCGQL 565
Query: 696 QCGSFLKLLTETEAARALGPGEGR 767
CG L+ L A G G GR
Sbjct: 566 GCGHALRAL----GAAPFGAGSGR 585
>ref|XP_544051.2| PREDICTED: similar to deleted in malignant brain tumors 1 isoform b
precursor [Canis familiaris].
Length = 416
Score = 52.4 bits (124), Expect = 7e-07
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Frame = +3
Query: 153 NLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQC 332
N DSG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L C
Sbjct: 63 NRTDSGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGC 114
Query: 333 GQPLIFAHLQPFSRRW-------ILNQIICHGQQVSFSNCS 434
G +A P + R+ +L+ + C G + +CS
Sbjct: 115 G----WATSAPGNARFGQGSGPIVLDDVRCSGHESYLWSCS 151
Score = 51.2 bits (121), Expect = 1e-06
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 229 DSGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCGWA 280
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCS-----LTKTNQGDPLSLVC 476
+ A S +L+ + C G + +CS L + S++C
Sbjct: 281 ISAPGNARFGQGSGPIVLDDVRCSGYESYLWSCSHNGWNLHNCRHSEDASVIC 333
>ref|XP_852911.1| PREDICTED: similar to deleted in malignant brain tumors 1 isoform c
precursor, partial [Canis familiaris].
Length = 201
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 50 DSGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCG-- 99
Query: 342 LIFAHLQPFSRRW-------ILNQIICHGQQVSFSNCS 434
+A P + R+ +L+ + C G + +CS
Sbjct: 100 --WATSAPGNARFGQGSGPIVLDDVRCSGHESYLWSCS 135
>ref|XP_852899.1| PREDICTED: similar to deleted in malignant brain tumors 1 isoform c
precursor [Canis familiaris].
Length = 316
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 51 DSGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCG-- 100
Query: 342 LIFAHLQPFSRRW-------ILNQIICHGQQVSFSNCS 434
+A P + R+ +L+ + C G + +CS
Sbjct: 101 --WATSAPGNARFGQGSGPIVLDDVRCSGHESYLWSCS 136
>ref|XP_544053.2| PREDICTED: similar to deleted in malignant brain tumors 1 isoform a
precursor [Canis familiaris].
Length = 1169
Score = 50.1 bits (118), Expect = 3e-06
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
++G +RL G S RC G++EV ++ W TV W D ++A +C+ L CG+
Sbjct: 94 ENGPELRLVGGSGRCSGRVEVLHEGAWGTVCDDLW--------DLNEAQVVCRQLGCGRA 145
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNC 431
+ AH P S +L+ I C G + C
Sbjct: 146 IAAPGKAHFGPGSGSILLDNIQCSGNENHLGQC 178
>ref|XP_544052.2| PREDICTED: similar to deleted in malignant brain tumors 1 isoform a
precursor [Canis familiaris].
Length = 771
Score = 49.7 bits (117), Expect = 4e-06
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
++G +RL RCQG++EV Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 26 ETGLALRLVNGGDRCQGRVEVLYRGSWGTVCDDSW--------DTNDANVVCRQLGCG-- 75
Query: 342 LIFAHLQPFSRRW-------ILNQIICHGQQVSFSNC-----SLTKTNQGDPLSLVC 476
+A P + R+ +L+ + C G + NC +L + S++C
Sbjct: 76 --WATSAPGNARFGQGSGPIVLDDLRCSGNESYLWNCPHNGWNLHNCRHSEDASVIC 130
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,780,546
Number of extensions: 1351038
Number of successful extensions: 5632
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5548
Number of HSP's successfully gapped: 21
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008312
(977 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122727.2| PREDICTED: LOW QUALITY PROTEIN: t-cell surfa... 489 e-147
Alignment gi|NP_999141.1| scavenger receptor cysteine-rich type 1 protein... 58 7e-09
Alignment gi|NP_001230397.1| CD5 antigen-like [Sus scrofa]. 56 3e-08
Alignment gi|XP_003355637.1| PREDICTED: antigen WC1.1-like [Sus scrofa]. 50 2e-06
Alignment gi|XP_003359439.1| PREDICTED: deleted in malignant brain tumors... 49 4e-06
Alignment gi|XP_003133265.2| PREDICTED: hypothetical protein LOC100519221... 49 4e-06
>ref|XP_003122727.2| PREDICTED: LOW QUALITY PROTEIN: t-cell surface glycoprotein
CD5-like [Sus scrofa].
Length = 497
Score = 489 bits (1260), Expect(3) = e-147
Identities = 239/278 (85%), Positives = 241/278 (86%)
Frame = +3
Query: 69 MGSQRPPXXXXXXXXXXVISCLRGLGGLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYT 248
MGSQRPP VISCLRGLGGLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYT
Sbjct: 1 MGSQRPPLAALHLLGLLVISCLRGLGGLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYT 60
Query: 249 VHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIFAHLQPFSRRWILNQIICHGQQVSFSN 428
VHSQSWGWSLFHQEDP QASKLCQDLQCGQPLIFAHLQPFSRRWILNQIICHGQQVSFSN
Sbjct: 61 VHSQSWGWSLFHQEDPXQASKLCQDLQCGQPLIFAHLQPFSRRWILNQIICHGQQVSFSN 120
Query: 429 CSLTKTNQGDPLSLVCLEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEF 608
CSLTKTNQGDPLSLVCLE RLRLVAGPGGLRCAGLVEF
Sbjct: 121 CSLTKTNQGDPLSLVCLEPPRTTPPPTTSPPTTTPEPTAPPRLRLVAGPGGLRCAGLVEF 180
Query: 609 YRGSLGGTIGLESHERLEEPLGNVICAALQCGSFLKLLTETEAARALGPGEGRPLPVQWK 788
YRGSLGGTIGLESHERLEEPLGNVICAALQCGSFLKLLTETEAARALGPGEGRPLPVQWK
Sbjct: 181 YRGSLGGTIGLESHERLEEPLGNVICAALQCGSFLKLLTETEAARALGPGEGRPLPVQWK 240
Query: 789 IQNPWCVTLEECFRKVQPQAGGPVLGLVCSDFSPKCRA 902
IQNPWCVTLEECFRKVQPQAGG VLGLVCSDF PK ++
Sbjct: 241 IQNPWCVTLEECFRKVQPQAGGQVLGLVCSDFQPKVQS 278
Score = 45.8 bits (107), Expect(3) = e-147
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = +1
Query: 910 GHSXTCEGSVXVPQGKQWDTLC 975
GHS TCEGSV V QGKQWDTLC
Sbjct: 282 GHSGTCEGSVEVRQGKQWDTLC 303
Score = 25.8 bits (55), Expect(3) = e-147
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 881 FQPKVQSRLVG 913
FQPKVQSRLVG
Sbjct: 272 FQPKVQSRLVG 282
>ref|NP_999141.1| scavenger receptor cysteine-rich type 1 protein M130 [Sus scrofa].
Length = 1110
Score = 58.2 bits (139), Expect = 7e-09
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 18/211 (8%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIFAH 356
+RL + C+G++E+N +W ++ + W D A LCQ L+CG L
Sbjct: 577 IRLVNGKTPCEGRVELNILGSWGSLCNSHW--------DMEDAHVLCQQLKCGVALSIPG 628
Query: 357 LQPF---SRRWILNQIICHGQQVSFSNCSLTK-----TNQGDPLSLVC----------LE 482
PF S + + C G + +CS+T + G S++C
Sbjct: 629 GAPFGKGSEQVWRHMFHCTGTEKHMGDCSVTALGASLCSSGQVASVICSGNQSQTLSPCN 688
Query: 483 XXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLE 662
+LRLV G G RCAG VE Y G+ GTI +S + +
Sbjct: 689 SSSSDPSSSIISEESGVACIGSGQLRLVDGGG--RCAGRVEVYPGASWGTICDDSWDLND 746
Query: 663 EPLGNVICAALQCGSFLKLLTETEAARALGP 755
+V+C L CG + GP
Sbjct: 747 ---AHVVCKQLSCGWAINATGSAHFGEGTGP 774
>ref|NP_001230397.1| CD5 antigen-like [Sus scrofa].
Length = 552
Score = 56.2 bits (134), Expect = 3e-08
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 12/225 (5%)
Frame = +3
Query: 120 VISCLRGLG-GLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDP 296
+ C G G+ E VRL+G RC+G++EV W+T+ WG
Sbjct: 218 IFDCFHNEGAGVQCEKPSLTVRLAGGPHRCEGRVEVQQNGEWHTMCHAGWGM-------- 269
Query: 297 SQASKLCQDLQCGQP------LIFAHLQPFSRRWILNQIICHGQQVSFSNCSLTKT---- 446
+A+ +C++L CG+ + ++ ++ ++IC G +++ + C
Sbjct: 270 EEAAVVCRELNCGEAKGTPRGTAYEPSTGTDQKVLMQEVICQGHELNLTACEPVDIFDCF 329
Query: 447 -NQGDPLSLVCLEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSL 623
N+G + LE +RLV GP RC G VE
Sbjct: 330 HNEGAGVQCEMLE-----------------------NVRLVGGP--RRCKGRVEVKHQGK 364
Query: 624 GGTIGLESHERLEEPLGNVICAALQCGSFLKLLTETEAARALGPG 758
GT+ ++ L V+C L CG LLT+ + G G
Sbjct: 365 WGTV-CKAGWNLSAV--KVVCRQLGCGK--ALLTKRCCSTTQGQG 404
Score = 50.1 bits (118), Expect = 2e-06
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Frame = +3
Query: 147 GLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDL 326
G E VRL+G RC+G++EV W+T+ WG +A+ +C++L
Sbjct: 121 GAQCEKPSLTVRLAGGPHRCEGRVEVQQNGEWHTMCHAGWGM--------EEAAVVCREL 172
Query: 327 QCGQP------LIFAHLQPFSRRWILNQIICHGQQVSFSNC 431
CG+ + ++ ++ ++IC G +++ + C
Sbjct: 173 NCGEAKGTPRGTAYEPSTGTDQKVLMQEVICQGHELNLTAC 213
Score = 49.7 bits (117), Expect = 2e-06
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Frame = +3
Query: 171 FMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLI- 347
F +RL G + C G+LEV +K W +V WG +ED + +C+ L CG+ L
Sbjct: 447 FDLRLVGGDTNCSGRLEVLHKGEWGSVCDDGWG----EEEDRT----VCKQLGCGESLFP 498
Query: 348 FAHLQPFSR---RWILNQIICHGQQVSFSNCSLT-----KTNQGDPLSLVCLE 482
A +Q F R R L+ + C G++ S C N + ++++C E
Sbjct: 499 SAKIQKFGRGVGRIWLDDVRCSGKEKSLEQCQHRFWGHHDCNHKEDVAVICSE 551
Score = 49.3 bits (116), Expect = 3e-06
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
+S VRL G RC+G++EV W TV WG ED + +C++L CG+
Sbjct: 19 ESSSTVRLVGGPHRCEGRVEVQQNGEWGTVCDDGWG-----MED---VAVVCRELNCGEA 70
Query: 342 ------LIFAHLQPFSRRWILNQIICHGQQVSFSNC 431
++ ++ L ++IC G +++ S C
Sbjct: 71 KWTPSGTLYTPSTDKDQKVFLQEVICQGHELNLSQC 106
>ref|XP_003355637.1| PREDICTED: antigen WC1.1-like [Sus scrofa].
Length = 906
Score = 50.1 bits (118), Expect = 2e-06
Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 8/199 (4%)
Frame = +3
Query: 150 LNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQ 329
L L ++RL SRC G++E+ ++ +W TV W D + + +C+ L
Sbjct: 16 LTLSSDSNLLRLVNGGSRCAGRVEILHQGSWGTVCDDYW--------DLNDVNVVCRQLG 67
Query: 330 CGQPL---IFAHLQPFSRRWILNQIICHGQQVSFSNCSLT-----KTNQGDPLSLVCLEX 485
CG+ L +FAH S R L+ + C G++ C+ N + ++C
Sbjct: 68 CGEGLEAKVFAHFGAGSGRIWLDDVNCTGKESHLWKCTSPGWEQHNCNHEEDAGVIC--- 124
Query: 486 XXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEE 665
+ LV G G C+G VE + + S
Sbjct: 125 --------------------SGFVHLVGGNG--PCSGRVEVHSEEDWTPV---SDGNFTF 159
Query: 666 PLGNVICAALQCGSFLKLL 722
P VIC L CG + +L
Sbjct: 160 PTAQVICVELGCGKAVSVL 178
>ref|XP_003359439.1| PREDICTED: deleted in malignant brain tumors 1 protein-like,
partial [Sus scrofa].
Length = 973
Score = 48.9 bits (115), Expect = 4e-06
Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +3
Query: 165 SGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPL 344
SG +RL S RC+G++EV Y TW TV SW D A +C+ L CG+ L
Sbjct: 424 SGASLRLGNGSHRCEGRVEVFYSGTWGTVCDDSW--------DLVDAGVVCRQLGCGEAL 475
Query: 345 IFAHLQPFSR---RWILNQIICHGQQVSFSNC 431
F R L+ + C G + C
Sbjct: 476 SAPAQSYFDRGTGHITLDDVKCTGNETKLWQC 507
>ref|XP_003133265.2| PREDICTED: hypothetical protein LOC100519221 [Sus scrofa].
Length = 3078
Score = 48.9 bits (115), Expect = 4e-06
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIF-- 350
VRL + RC G++EV + TW TV W D ++A+ +C+ LQCGQ +
Sbjct: 1173 VRLVDGTGRCSGRVEVLVQGTWGTVCDDLW--------DLAEATVVCRQLQCGQAVAAPT 1224
Query: 351 -AHLQPFSRRWILNQIICHGQQVSFSNC 431
AH S + +L+ + C G + C
Sbjct: 1225 GAHFGAGSGKIVLDDVQCVGSESHLGQC 1252
Score = 48.9 bits (115), Expect = 4e-06
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIF-- 350
VRL + RC G++EV + TW TV W D ++A+ +C+ LQCGQ +
Sbjct: 1326 VRLVDGTGRCSGRVEVLVQGTWGTVCDDLW--------DLAEATVVCRQLQCGQAVAAPT 1377
Query: 351 -AHLQPFSRRWILNQIICHGQQVSFSNC 431
AH S + +L+ + C G + C
Sbjct: 1378 GAHFGAGSGKIVLDDVQCVGSESHLGQC 1405
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,322,532
Number of extensions: 856665
Number of successful extensions: 3654
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3603
Number of HSP's successfully gapped: 13
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008312
(977 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031676.3| T-cell surface glycoprotein CD5 precursor [Mus ... 198 3e-54
Alignment gi|NP_031795.2| deleted in malignant brain tumors 1 protein [Mu... 58 1e-08
Alignment gi|NP_001163866.1| scavenger receptor cysteine-rich type 1 prot... 53 3e-07
Alignment gi|NP_444324.2| scavenger receptor cysteine-rich type 1 protein... 53 3e-07
Alignment gi|NP_780375.2| putative DMBT1-like protein precursor [Mus musc... 52 9e-07
Alignment gi|NP_766497.3| CD163 molecule-like 1 [Mus musculus]. 50 3e-06
>ref|NP_031676.3| T-cell surface glycoprotein CD5 precursor [Mus musculus].
Length = 494
Score = 198 bits (503), Expect(3) = 3e-54
Identities = 112/259 (43%), Positives = 151/259 (58%), Gaps = 4/259 (1%)
Frame = +3
Query: 138 GLGGLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLC 317
G GGL+++ V LSGS+S+CQGQ+E+ ++ W TV S SW S H ++ QAS +C
Sbjct: 26 GRGGLDIQ-----VMLSGSNSKCQGQVEIQMENKWKTVCSSSWRLSQDHSKNAQQASAVC 80
Query: 318 QDLQCGQPLIFAHLQPFSRRWILNQIICHGQQVSFSNCSLTKT-NQGDPLSLVCLEXXXX 494
+ L+CG PL +R NQ+ C G S SNC+ T + +Q PLSL+CLE
Sbjct: 81 KQLRCGDPLALGPFPSLNRP--QNQVFCQGSPWSISNCNNTSSQDQCLPLSLICLEPQRT 138
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEEPLG 674
RL+LV G GLRC G+VEFY GS GGTI ++ +R LG
Sbjct: 139 TPPPTTTPPTTVPEPTAPPRLQLVPGHEGLRCTGVVEFYNGSWGGTILYKAKDR-PLGLG 197
Query: 675 NVICAALQCGSFLKLLTETEAARALGPGE---GRPLPVQWKIQNPWCVTLEECFRKVQPQ 845
N+IC +LQCGSFL L+ TEAA P E RPLP++W+ N CV+L++CF+K Q
Sbjct: 198 NLICKSLQCGSFLTHLSGTEAAGTPAPAELRDPRPLPIRWEAPNGSCVSLQQCFQKTTAQ 257
Query: 846 AGGPVLGLVCSDFSPKCRA 902
GG L ++CSDF PK ++
Sbjct: 258 EGGQALTVICSDFQPKVQS 276
Score = 27.7 bits (60), Expect(3) = 3e-54
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 910 GHSXTCEGSVXVPQGKQWDTLC 975
G S CEG V Q QW+ LC
Sbjct: 280 GGSSVCEGIAEVRQRSQWEALC 301
Score = 25.8 bits (55), Expect(3) = 3e-54
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 881 FQPKVQSRLVG 913
FQPKVQSRLVG
Sbjct: 270 FQPKVQSRLVG 280
>ref|NP_031795.2| deleted in malignant brain tumors 1 protein [Mus musculus].
Length = 1946
Score = 57.8 bits (138), Expect = 1e-08
Identities = 57/220 (25%), Positives = 83/220 (37%), Gaps = 22/220 (10%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG VRL RCQG++E+ Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 319 DSGLAVRLVNGGDRCQGRVEILYQGSWGTVCDDSW--------DTNDANVVCRQLGCGWA 370
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCS------------------LTKTNQGD 458
+ A+ P S +L+ + C G + CS + +
Sbjct: 371 VSAPGNAYFGPGSGSIVLDDVACTGHEDYLWRCSHRGWLSHNCGHHEDAGVICSASQSSS 430
Query: 459 PLSLVCLEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTI 635
P V +RLV GG RC G VE Y+GS GT+
Sbjct: 431 PTPDVFYPTDQTTAEQTTVPDYTPIGTDSGLAVRLV--NGGDRCQGRVEILYQGS-WGTV 487
Query: 636 GLESHERLEEPLGNVICAALQCGSFLKLLTETEAARALGP 755
+S + + NV+C L CG + + GP
Sbjct: 488 CDDSWDLND---ANVVCRQLGCGLAVSAPGSARFGQGTGP 524
Score = 53.9 bits (128), Expect = 2e-07
Identities = 56/220 (25%), Positives = 81/220 (36%), Gaps = 19/220 (8%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG VRL RCQG++E+ Y+ +W TV SW D S A+ +C+ L CG
Sbjct: 181 DSGLAVRLVNGGDRCQGRVEILYQGSWGTVCDDSW--------DVSDANVVCRQLGCGWA 232
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCS-----LTKTNQGDPLSLVCLEXXXXX 497
+ A+ +L+ + C G + +CS + ++C
Sbjct: 233 VSAPGNAYFGQGQGPIVLDDVACGGYENYLWSCSHQGWLSHNCGHQEDAGVICSASQSSS 292
Query: 498 XXXXXXXXXXXXXXXXXXRLRLVAGP----------GGLRCAGLVE-FYRGSLGGTIGLE 644
+ AG GG RC G VE Y+GS GT+ +
Sbjct: 293 PTPGWWNPGGTNNDVFYPTEQTTAGTDSGLAVRLVNGGDRCQGRVEILYQGS-WGTVCDD 351
Query: 645 SHERLEEPLGNVICAALQCGSFLKLLTETEAARALGPGEG 764
S + + NV+C L CG GPG G
Sbjct: 352 SWDTND---ANVVCRQLGCG----WAVSAPGNAYFGPGSG 384
Score = 50.8 bits (120), Expect = 2e-06
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DS +RL S+RC+G++E+ Y+ +W TV SWG S A+ +C+ L CG
Sbjct: 1366 DSSLALRLVNGSNRCEGRVEILYRGSWGTVCDDSWG--------ISDANVVCRQLGCGSA 1417
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNC 431
L A S +L+ + C G + NC
Sbjct: 1418 LSAPGNAWFGQGSGLIVLDDVSCSGYESHLWNC 1450
Score = 50.4 bits (119), Expect = 2e-06
Identities = 56/224 (25%), Positives = 82/224 (36%), Gaps = 26/224 (11%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG VRL RCQG++E+ Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 458 DSGLAVRLVNGGDRCQGRVEILYQGSWGTVCDDSW--------DLNDANVVCRQLGCG-- 507
Query: 342 LIFAHLQPFSRRW-------ILNQIICHGQQVSFSNCS------------------LTKT 446
A P S R+ +++ + C G + CS + +
Sbjct: 508 --LAVSAPGSARFGQGTGPIVMDDVACGGYEDYLWRCSHRGWLSHNCGHHEDAGVICSAS 565
Query: 447 NQGDPLSLVCLEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSL 623
P V +RL GG RC G VE Y+GS
Sbjct: 566 QSSSPTPDVFYPTDQTTAEQTTVPDYTTIGTENSLAVRL--ENGGDRCQGRVEILYQGS- 622
Query: 624 GGTIGLESHERLEEPLGNVICAALQCGSFLKLLTETEAARALGP 755
GT+ +S + + NV+C L CG + + GP
Sbjct: 623 WGTVCDDSWDLND---ANVVCRQLGCGLAVSAPGSARFGQGTGP 663
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
++ VRL RCQG++E+ Y+ +W TV SW D A+ +C+ L CG
Sbjct: 736 ENSLAVRLENGGDRCQGRVEILYQGSWGTVCDDSW--------DTKDANVVCRQLGCGWA 787
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCS 434
+ A+ P S +L+ + C G + +CS
Sbjct: 788 VSAPGNAYFGPGSGSIVLDDVACTGHEDYLWSCS 821
Score = 48.5 bits (114), Expect = 8e-06
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
DSG VRL RCQG++E+ Y+ +W TV SW D + A+ +C+ L CG
Sbjct: 32 DSGLAVRLVNGGDRCQGRVEILYQGSWGTVCDDSW--------DLNDANVVCRQLGCGLA 83
Query: 342 LIF---AHLQPFSRRWILNQIICHGQQVSFSNCS 434
+ A S +++ + C G + CS
Sbjct: 84 VSAPGNARFGQGSGPIVMDDVACGGYEDYLWRCS 117
>ref|NP_001163866.1| scavenger receptor cysteine-rich type 1 protein M130 isoform 1
precursor [Mus musculus].
Length = 1159
Score = 53.1 bits (126), Expect = 3e-07
Identities = 50/196 (25%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIF-- 350
+RL+G S C+G++E+ W + S W D A LCQ L+CG
Sbjct: 582 IRLAGGESSCEGRVELKTLGAWGPLCSSHW--------DMEDAHVLCQQLKCGVAQSIPE 633
Query: 351 -AHLQPFSRRWILNQIICHGQQVSFSNCSLT-----------------KTNQGDPLSLVC 476
AH + + + C G + +C +T NQ L L C
Sbjct: 634 GAHFGKGAGQVWSHMFHCTGTEEHIGDCLMTALGAPTCSEGQVASVICSGNQSQTL-LPC 692
Query: 477 LEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHER 656
+LRLV G G RCAG VE Y GT+ ++ +
Sbjct: 693 SSLSPVQTTSSTIPKESEVPCIASGQLRLVGGGG--RCAGRVEVYHEGSWGTVCDDNWDM 750
Query: 657 LEEPLGNVICAALQCG 704
+ NV+C L CG
Sbjct: 751 TD---ANVVCKQLDCG 763
>ref|NP_444324.2| scavenger receptor cysteine-rich type 1 protein M130 isoform 2
precursor [Mus musculus].
Length = 1121
Score = 53.1 bits (126), Expect = 3e-07
Identities = 50/196 (25%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Frame = +3
Query: 177 VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIF-- 350
+RL+G S C+G++E+ W + S W D A LCQ L+CG
Sbjct: 582 IRLAGGESSCEGRVELKTLGAWGPLCSSHW--------DMEDAHVLCQQLKCGVAQSIPE 633
Query: 351 -AHLQPFSRRWILNQIICHGQQVSFSNCSLT-----------------KTNQGDPLSLVC 476
AH + + + C G + +C +T NQ L L C
Sbjct: 634 GAHFGKGAGQVWSHMFHCTGTEEHIGDCLMTALGAPTCSEGQVASVICSGNQSQTL-LPC 692
Query: 477 LEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHER 656
+LRLV G G RCAG VE Y GT+ ++ +
Sbjct: 693 SSLSPVQTTSSTIPKESEVPCIASGQLRLVGGGG--RCAGRVEVYHEGSWGTVCDDNWDM 750
Query: 657 LEEPLGNVICAALQCG 704
+ NV+C L CG
Sbjct: 751 TD---ANVVCKQLDCG 763
>ref|NP_780375.2| putative DMBT1-like protein precursor [Mus musculus].
Length = 841
Score = 51.6 bits (122), Expect = 9e-07
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Frame = +3
Query: 150 LNLEDSGFM--VRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQD 323
L + DSG +RL G SSRC G++E+ Y+ W T+ WG ++A +C+
Sbjct: 417 LPVSDSGDWPELRLVGGSSRCSGRVEILYQGVWGTICDDLWG--------SNEAEVVCRQ 468
Query: 324 LQCGQ---PLIFAHLQPFSRRWILNQIICHGQQVSFSNC 431
L+CGQ L A+ P S L+ + C G + C
Sbjct: 469 LECGQAVSSLGEAYFGPGSGEIFLDNLQCSGMEHYLGQC 507
Score = 51.2 bits (121), Expect = 1e-06
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +3
Query: 174 MVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLI-- 347
++RL+GSS +C G++E+ ++ W TV W D ++A +C+ L CG +
Sbjct: 679 VLRLAGSSGQCSGRVEILHQGAWGTVCDDLW--------DLNEAEVVCRQLGCGHAIAAP 730
Query: 348 -FAHLQPFSRRWILNQIICHGQQVSFSNCS 434
A+ P S +L+ I C G + F CS
Sbjct: 731 GSAYFGPGSGNILLDNIQCSGTENHFGQCS 760
>ref|NP_766497.3| CD163 molecule-like 1 [Mus musculus].
Length = 989
Score = 50.1 bits (118), Expect = 3e-06
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Frame = +3
Query: 174 MVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQ-PLIF 350
++RL S C G++E++ +W V +W D AS +C+ L CG+ +
Sbjct: 440 ILRLRDGQSYCDGRVEISLDGSWGRVLDDAW--------DLHGASVVCRQLGCGEAQRAY 491
Query: 351 AHLQPFSRRWI--LNQIICHGQQVSFSNCSLTKTNQGDPLSLVCLEXXXXXXXXXXXXXX 524
P RR L+Q+ C G + +C+++ +
Sbjct: 492 DAPAPIFRRVPVGLSQVRCLGSETRLVHCNVSTS----------------LLVPAGTLRD 535
Query: 525 XXXXXXXXXRLRLVAGPGGLRCAGLVE-FYRGSLGGTIGLESHERLEEPLGNVICAALQC 701
R+RL AGPG RCAG VE FY+GS GT+ ++ + + V+C L C
Sbjct: 536 AGVVCSGSLRVRLAAGPG--RCAGRVELFYQGS-WGTVCDDAWDLQD---AQVVCRQLDC 589
Query: 702 GSFL 713
G L
Sbjct: 590 GHAL 593
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,939,693
Number of extensions: 1078740
Number of successful extensions: 4095
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4037
Number of HSP's successfully gapped: 17
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008312
(977 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055022.2| T-cell surface glycoprotein CD5 precursor [Homo... 233 1e-65
Alignment gi|NP_777601.2| scavenger receptor cysteine-rich type 1 protein... 56 6e-08
Alignment gi|NP_006716.3| T-cell differentiation antigen CD6 precursor [H... 55 7e-08
>ref|NP_055022.2| T-cell surface glycoprotein CD5 precursor [Homo sapiens].
Length = 495
Score = 233 bits (595), Expect(3) = 1e-65
Identities = 138/283 (48%), Positives = 166/283 (58%), Gaps = 4/283 (1%)
Frame = +3
Query: 66 PMGSQRPPXXXXXXXXXXVISCLRGLGGLNLEDSGFMVRLSGSSSRCQGQLEVNYKSTWY 245
PMGS +P V SCL G L+ D F RL+ S+S+CQGQLEV K W+
Sbjct: 2 PMGSLQP-LATLYLLGMLVASCL---GRLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWH 57
Query: 246 TVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIFAHLQPFSRRWI-LNQIICHGQQVSF 422
V SQSWG S EDPSQASK+CQ L CG PL L PF + + IIC+GQ SF
Sbjct: 58 MVCSQSWGRSSKQWEDPSQASKVCQRLNCGVPL---SLGPFLVTYTPQSSIICYGQLGSF 114
Query: 423 SNCSLTKTNQGDPLSLVCLEXXXXXXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLV 602
SNCS ++ + L L CLE RL+LVA GG CAG+V
Sbjct: 115 SNCSHSRNDMCHSLGLTCLEPQKTTPPTTRPPPTTTPEPTAPPRLQLVAQSGGQHCAGVV 174
Query: 603 EFYRGSLGGTIGLESHERLEEPLGNVICAALQCGSFLKLLTETEAARALGPGEGR---PL 773
EFY GSLGGTI E+ ++ ++ L N +C LQCGSFLK L ETEA RA PGE R PL
Sbjct: 175 EFYSGSLGGTISYEAQDKTQD-LENFLCNNLQCGSFLKHLPETEAGRAQDPGEPREHQPL 233
Query: 774 PVQWKIQNPWCVTLEECFRKVQPQAGGPVLGLVCSDFSPKCRA 902
P+QWKIQN C +LE CFRK++PQ G VL L+CS F PK ++
Sbjct: 234 PIQWKIQNSSCTSLEHCFRKIKPQKSGRVLALLCSGFQPKVQS 276
Score = 31.2 bits (69), Expect(3) = 1e-65
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 910 GHSXTCEGSVXVPQGKQWDTLC 975
G S CEG+V V QG QW LC
Sbjct: 280 GGSSICEGTVEVRQGAQWAALC 301
Score = 25.8 bits (55), Expect(3) = 1e-65
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 881 FQPKVQSRLVG 913
FQPKVQSRLVG
Sbjct: 270 FQPKVQSRLVG 280
>ref|NP_777601.2| scavenger receptor cysteine-rich type 1 protein M160 precursor [Homo
sapiens].
Length = 1453
Score = 55.8 bits (133), Expect = 6e-08
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 9/198 (4%)
Frame = +3
Query: 162 DSGFMVRLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQP 341
D+ + +RL G S+RC G+LEV ++ W TV W + A+ +C L C
Sbjct: 578 DATWGLRLVGGSNRCSGRLEVYFQGRWGTVCDDGW--------NSKAAAVVCSQLDCPSS 629
Query: 342 LIFAHL----QPFSRRWILNQIICHGQQVSFSNCSLTKTNQGD-----PLSLVCLEXXXX 494
+I L + + W L+ + C G + +C + D + ++C +
Sbjct: 630 IIGMGLGNASTGYGKIW-LDDVSCDGDESDLWSCRNSGWGNNDCSHSEDVGVICSD---- 684
Query: 495 XXXXXXXXXXXXXXXXXXXRLRLVAGPGGLRCAGLVEFYRGSLGGTIGLESHERLEEPLG 674
LRLV G RCAG VE ++ G +G+ +
Sbjct: 685 ---------------ASDMELRLVGGSS--RCAGKVEV---NVQGAVGILCANGWGMNIA 724
Query: 675 NVICAALQCGSFLKLLTE 728
V+C L+CGS +++ E
Sbjct: 725 EVVCRQLECGSAIRVSRE 742
>ref|NP_006716.3| T-cell differentiation antigen CD6 precursor [Homo sapiens].
Length = 668
Score = 55.5 bits (132), Expect = 7e-08
Identities = 30/85 (35%), Positives = 45/85 (52%)
Frame = +3
Query: 180 RLSGSSSRCQGQLEVNYKSTWYTVHSQSWGWSLFHQEDPSQASKLCQDLQCGQPLIFAHL 359
RL+G + RC+GQ+EV+++ W TV W PS+A LCQ L CG +
Sbjct: 266 RLTGGADRCEGQVEVHFRGVWNTVCDSEW--------YPSEAKVLCQSLGCGTAVERPKG 317
Query: 360 QPFSRRWILNQIICHGQQVSFSNCS 434
P S + C+G++++ SNCS
Sbjct: 318 LPHSLSGRM-YYSCNGEELTLSNCS 341
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,874,054
Number of extensions: 1314905
Number of successful extensions: 5566
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5445
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008312
(977 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 664 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 664 bits (335), Expect = 0.0
Identities = 338/339 (99%)
Strand = Plus / Minus
Query: 541 cagcacctcccaggctgaggctggtggcggggcccgggggcctgcgctgtgcaggcctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10259530 cagcacctcccaggctgaggctggtggcggggcccgggggcctgcgctgtgcaggcctgg 10259471
Query: 601 tggagttctacaggggcagcctgggtggcaccatcggcctcgagtcccatgagaggcttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10259470 tggagttctacaggggcagcctgggtggcaccatcggcctcgagtcccatgagaggcttg 10259411
Query: 661 aggagcccctgggaaacgtcatctgtgcagccctgcagtgtggctccttcctgaagcttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10259410 aggagcccctgggaaacgtcatctgtgcagccctgcagtgtggctccttcctgaagcttc 10259351
Query: 721 taacagagaccgaggcagccagggcactggggccaggagagggccgacccttgccggtcc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10259350 taacagagaccgaggcagccagggcactggggccaggagagggccgacccttgccggtcc 10259291
Query: 781 agtggaagatccagaacccatggtgtgtcaccctggaggagtgcttcaggaaagtccagc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10259290 agtggaagatccagaacccatggtgtgtcaccctggaggagtgcttcaggaaagtccagc 10259231
Query: 841 cccaggcgggtggcccagttcttggccttgtctgttccg 879
||||||||||||||| |||||||||||||||||||||||
Sbjct: 10259230 cccaggcgggtggccaagttcttggccttgtctgttccg 10259192
Score = 607 bits (306), Expect = e-171
Identities = 313/314 (99%), Gaps = 1/314 (0%)
Strand = Plus / Minus
Query: 167 agggttcatggtgagactgagtggctccagctcgcggtgccagggccagctggaggtcaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260881 agggttcatggtgagactgagtggctccagctcgcggtgccagggccagctggaggtcaa 10260822
Query: 227 ctacaagagcacatggtacacagtgcacagccagagctggggctggtccctgttccacca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260821 ctacaagagcacatggtacacagtgcacagccagagctggggctggtccctgttccacca 10260762
Query: 287 ggaggaccccagtcaggcctcgaagctctgccaggacctgcaatgcgggcagcccttgat 346
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260761 ggaggaccc-agtcaggcctcgaagctctgccaggacctgcaatgcgggcagcccttgat 10260703
Query: 347 cttcgctcacttacagcccttcagcaggaggtggatcctaaaccagatcatctgccatgg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260702 cttcgctcacttacagcccttcagcaggaggtggatcctaaaccagatcatctgccatgg 10260643
Query: 407 acaacaggtgtccttctccaactgcagcttgactaagacaaaccagggggaccctctgtc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260642 acaacaggtgtccttctccaactgcagcttgactaagacaaaccagggggaccctctgtc 10260583
Query: 467 tctggtctgcttag 480
||||||||||||||
Sbjct: 10260582 tctggtctgcttag 10260569
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 gacgccctcacccaccgtgcaggtgccggccgagctcaccgaggctgaggcaggaggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10272663 gacgccctcacccaccgtgcaggtgccggccgagctcaccgaggctgaggcaggaggagg 10272722
Query: 61 ccgcgcccatggggtctcagcgtccaccactggccgccctgcacctgctggggctgctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10272723 ccgcgcccatggggtctcagcgtccaccactggccgccctgcacctgctggggctgctgg 10272782
Score = 129 bits (65), Expect = 3e-27
Identities = 88/95 (92%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 884 cagcccaaagtgcagagccgcctggtggg-cacagtgncacatgtgaaggctccgtgnaa 942
|||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| |
Sbjct: 10256626 cagcccaaggtgcagagccgcctggtggggcacagtggcacatgtgaaggctccgtggag 10256567
Query: 943 gtgccgcagggcaagcagtgggacaccctatgtga 977
|||| |||||||||||||||||||||||||||||
Sbjct: 10256566 gtgcgccagggcaagcagtgggacaccctatgtga 10256532
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 479 agagccaccgaggacgacacctcctcccacgacttccccgcccacgactactccagagcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260097 agagccaccgaggacgacacctcctcccacgacttccccgcccacgactactccagagcc 10260038
Query: 539 cacag 543
|||||
Sbjct: 10260037 cacag 10260033
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 120 gtcatttcctgcctcagaggcctcggagggctcaacttggaggactcagg 169
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10262365 gtcatttcctgcctcagaggcctcggagggctcaacttggaggactcagg 10262316
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,267,593
Number of extensions: 235
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 6
Length of query: 977
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 956
Effective length of database: 2,808,413,156
Effective search space: 2684842977136
Effective search space used: 2684842977136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)